RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764467|ref|YP_003064798.2| Type I secretion system
ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62]
(565 letters)
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 311 bits (797), Expect = 5e-85
Identities = 149/545 (27%), Positives = 257/545 (47%), Gaps = 17/545 (3%)
Query: 18 FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRS 77
F L S IN+L LT PLYM+ +YD V+ ++S L+ L+ + L LYA D IRS
Sbjct: 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRS 84
Query: 78 RLLIESSHLIER------FFKPYIITVTKKYEMDGTSLFSIISSLDQLKQFITSPVLPAL 131
R+L+ ++R F + + ++ DG + LDQ++QF+T L A
Sbjct: 85 RVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQ---PLRDLDQVRQFLTGTGLTAF 141
Query: 132 LDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFG 191
D + P+++ + F HP LG A+ I+L+ + +L + + + ++
Sbjct: 142 FDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLA 201
Query: 192 KAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSIL 251
A L N+E I A L W + A Q + + ++++ LRM LQS++L
Sbjct: 202 DATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261
Query: 252 GIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTL 311
G+GAWLVI +++ G +IA SI++ RA+AP++ I + K +S K L L
Sbjct: 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRL------NEL 315
Query: 312 LNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371
L + E + + ++ + + + I + +SF + G I GPSG GK
Sbjct: 316 LAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGK 375
Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431
S ++G+ G++ + + E+ IGYL Q LF +I ENI +
Sbjct: 376 STLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE 435
Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILL 489
+ + A++ G HE IL L GY T + Q+ I L+R + +P +++
Sbjct: 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495
Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLT 549
+DEP +LD+E + + K T+V+I+H P+ ++ D L+ + + FG
Sbjct: 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPR 555
Query: 550 QDIFK 554
+++
Sbjct: 556 EEVLA 560
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 204 bits (520), Expect = 5e-53
Identities = 129/543 (23%), Positives = 233/543 (42%), Gaps = 24/543 (4%)
Query: 11 MKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFF 70
+ Y +L S + +L L PL+ + D V+ S+ L L+ L
Sbjct: 149 LFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEA 208
Query: 71 GFDLIRSRLLIESSH-----LIERFFKPYIITVTKKYEMDGT-SLFSIISSLDQLKQFIT 124
L+R+ L+ L RFF+ + +E + S + L+Q+++F+T
Sbjct: 209 LLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLT 268
Query: 125 SPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSR 184
+L ++D+LF IF+ + F L + + L + IT++FQ R R+ +
Sbjct: 269 GSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEES 328
Query: 185 QDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244
++ +F + E + A + + W+ + ++ K + + T++
Sbjct: 329 AEQQSFLVETIKGIETVKALAAEPRFRSQWDN---RLAKQVNIGFKTEKLALILN-TIKS 384
Query: 245 TLQS----SILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300
LQ IL GA LV+ +L+ G ++A +++ ++P+ ++ ++
Sbjct: 385 LLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQ---QAKV 441
Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360
L L D + K I + I +N+ FR + ++LS IP G
Sbjct: 442 ALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501
Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420
I G SG GKS L +LGL ++G I ++ + Q+GY+ Q LF
Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561
Query: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIR 476
SI ENI L + + + + A++ G HE I +L GY T E N+ Q++
Sbjct: 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV--GEGGANLSGGQRQRLA 619
Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536
L+R + + P ILL+DE LD E + L Q + +T++II+H + I +D +
Sbjct: 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIIIAHRLSTIRSADRII 678
Query: 537 IFH 539
+
Sbjct: 679 VLD 681
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 154 bits (391), Expect = 5e-38
Identities = 111/538 (20%), Positives = 214/538 (39%), Gaps = 14/538 (2%)
Query: 10 FMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFL--YA 67
+ + + IL +L L PL + I D+++ ++ + L + L L
Sbjct: 8 LKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGV 67
Query: 68 LFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMD---GTSLFSIISSLDQLKQFIT 124
L + SRL + + R ++ + + G + + + ++ + ++
Sbjct: 68 LRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVS 127
Query: 125 SPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSR 184
+ ++ IL ++L F + L +L LL + L + +L RR +++
Sbjct: 128 TVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187
Query: 185 QDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244
+ L I A D L + + + ++ + L
Sbjct: 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247
Query: 245 TLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN 304
+L +G +LV+ L+ GA+ A + R + P+ Q+ L + + L
Sbjct: 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIA 364
L D + + P ++ + +I +N+ F ++ +++SF+I G I
Sbjct: 308 LLD-----EEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVL-KDISFSIEPGEKVAIV 361
Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITE 424
GPSG GKS + +L L G I I ++ +IG +SQ LF +I E
Sbjct: 362 GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421
Query: 425 NIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIA 482
NI L + ++ K+ HE I +L +GY T + + Q+ RL+ R +
Sbjct: 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481
Query: 483 NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540
NP IL++DE LD E + LK+ + +T +II+H + I +D ++
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLKG-RTTLIIAHRLSTIKNADRIIVLDN 538
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 118 bits (298), Expect = 4e-27
Identities = 72/321 (22%), Positives = 124/321 (38%), Gaps = 8/321 (2%)
Query: 224 YQSLIAKKYYFGISVTKTLRMTLQSSILGI--GAWLVIHQKLSAGAIIATSIITARAMAP 281
+ I K + G+ + T + S L G+ L+++ + G +I
Sbjct: 244 LKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMS 303
Query: 282 LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-D 340
L Q + + + D ++ +S I +N+ F
Sbjct: 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSS--IKGEIEFRNVCFSYP 361
Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF 400
+ I + +S IP G + GPSG GKS + + G + I
Sbjct: 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN 421
Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
++ +QIG +SQ LF +I ENI + ++ AK H+ IL L +GY T
Sbjct: 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481
Query: 461 TYCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
+ + QK R ++R + NP ILL+DE LD E++ L + + + T
Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541
Query: 519 IVIISHDPTIISMSDFSLIFH 539
IV ++H + I +D +
Sbjct: 542 IV-VAHRLSTIRNADKIAVME 561
Score = 90.3 bits (224), Expect = 1e-18
Identities = 87/420 (20%), Positives = 166/420 (39%), Gaps = 31/420 (7%)
Query: 132 LDILFTPIFIILSFCIHPILGSW----AILSGILLLTITILFQANN-ERLERRYKKSRQD 186
L ++ I ++ I + W +L+ LL ++ Q + + KK+ ++
Sbjct: 786 LSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE 845
Query: 187 EINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTL 246
+ N + A + + + ++ ++ G +++L +
Sbjct: 846 ASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905
Query: 247 QSSILGIGAWLVIHQKLSAGAII---------ATSIITARAMAPLEQIINSKKSLNVGLK 297
+ GA L+ + +++ + A ++ A + AP I +K +
Sbjct: 906 YALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP--DISKAKIAAG---- 959
Query: 298 SLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIP 356
S+ +++ ++S K + I +N+ F + + NLS +I
Sbjct: 960 SIFEILDRKPTIDPDSTSGGKLPNV-----KGDIEFRNVSFAYPTRPDVPVLNNLSLSIR 1014
Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCS 416
G + GPSG GKS + + + G + I ++ QIG +SQ
Sbjct: 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074
Query: 417 LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD---EIPYNIVQ 473
LF +I ENI ++ S + AK+ H I SL GY T + ++ Q
Sbjct: 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYD-TRVGERGVQLSGGQKQ 1133
Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533
+I ++R I NP ILL+DE LD+E++ L + E + TIV I+H + I +D
Sbjct: 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIV-IAHRLSTIQNAD 1192
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 116 bits (293), Expect = 1e-26
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ +N+ FR + +N+SF+I G I GPSG GKS +LGLL G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
IS+ + +GYL Q LF SI EN ILS Q
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN-ILSGGQ------------------ 101
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
Q++ L+R + NP IL++DEP HLD E + +
Sbjct: 102 ---------------------RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 511 QFKENKKTIVIISHDPTIISMSDFSLIFH 539
K T ++I+H P ++ +D L+
Sbjct: 141 ALKAAGATRIVIAHRPETLASADRILVLE 169
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 109 bits (275), Expect = 2e-24
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 25/204 (12%)
Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393
KN+ F +R ++S TI +G +I GP+G GKS L + GLL G +
Sbjct: 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62
Query: 394 RQISRDFIEKFSAQIGYLSQHCS--LFPISITENIILSHDQNSL------HIAQKTAKIV 445
+ +++ +++ ++G + Q+ F ++ E + + L ++ ++V
Sbjct: 63 KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV 122
Query: 446 GC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEA 501
G +L G + Q++ ++ ++A +P ILL+DEP LD
Sbjct: 123 GLEGLRDRSPFTLSGGQK-------------QRVAIAGVLAMDPDILLLDEPTAGLDPAG 169
Query: 502 KNNFYTLLKQFKENKKTIVIISHD 525
+ LLK+ K KTI+I++HD
Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHD 193
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 107 bits (268), Expect = 9e-24
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
I +N+ +R + +++S ++ +G + GP+G GKS L +LGLL
Sbjct: 1 MMPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPISITE----------NIILSHDQN 433
G I + + + + +IGY+ Q S+ FPI++ + ++
Sbjct: 59 GEIKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115
Query: 434 SLHIAQKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILL 489
+ + VG I L G + Q++ L+R +A NP +LL
Sbjct: 116 DKEKVDEALERVGMEDLRDRQIGELSGGQK-------------QRVLLARALAQNPDLLL 162
Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDP 526
+DEP +D + Y LLK+ ++ KT+++++HD
Sbjct: 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 106 bits (267), Expect = 1e-23
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 41/203 (20%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I KN+ F + + +++S TI G I GPSG GKS L +L L G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
+ +E I Y+ Q LF +I EN ILS Q
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIREN-ILSGGQR----------------- 102
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
Q+I ++R + +P IL++DE LD E + L+
Sbjct: 103 ----------------------QRIAIARALLRDPPILILDEATSALDPETEALILEALR 140
Query: 511 QFKENKKTIVIISHDPTIISMSD 533
+ KT+++I+H + I +D
Sbjct: 141 ALAKG-KTVIVIAHRLSTIRDAD 162
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 105 bits (265), Expect = 2e-23
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
I KN+ FR + I + LS TIP G + G SGCGKS + + G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449
I + +QIG +SQ LF +I ENI + ++ AK H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 450 DILSLKNGYQTTYCSD---EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
I+SL +GY T + ++ Q+I ++R + NP ILL+DE LD E++
Sbjct: 121 FIMSLPDGYDTL-VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 507 TLLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539
L + + +T ++I+H + I +D +
Sbjct: 180 EALDRAMKG-RTTIVIAHRLSTIRNADLIAVLQ 211
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 105 bits (265), Expect = 3e-23
Identities = 49/220 (22%), Positives = 103/220 (46%), Gaps = 13/220 (5%)
Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
+ +N+ + + +++S ++ EG + GPSGCGKS L + GL G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447
+ ++ GY+ Q +L P +++ +N+ L + + A+ +
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
E ++ L G++ Y ++ + Q++ L+R +A +P +LL+DEP LD +
Sbjct: 116 LE-LVGLS-GFENAY-PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172
Query: 508 -LLKQFKENKKTIVIISHDPT-IISMSDFSLIFHPIQGSL 545
LL ++E KT+++++HD + ++D ++ G +
Sbjct: 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI 212
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 105 bits (263), Expect = 4e-23
Identities = 116/531 (21%), Positives = 197/531 (37%), Gaps = 34/531 (6%)
Query: 15 FSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFG--- 71
F ++ L + FI P Y+ + D++ AL L LF
Sbjct: 153 FVLLLVSSLINMFI-------PYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGAL 203
Query: 72 FDLIRSRLLIESSHLIERFFKPYIITVTKKYEM---DGTSLFSIISSLDQLKQFITSPVL 128
+ IR LL + + + + + ++ D +IS L Q I S +
Sbjct: 204 ANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQ-IVSNSV 262
Query: 129 PALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKK-SRQDE 187
L + SW L+ + L+ + I+ + +K S+Q +
Sbjct: 263 SQNLSDGLRNLVQGFGGLGFMFSLSWR-LTLVTLIVVPIVALVAK-IYGKYLRKLSKQTQ 320
Query: 188 INFGKAILHNSEYIYAPST-RDF------LLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240
+A E + A T R F + Y K R + + F S T
Sbjct: 321 DALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS-TN 379
Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300
L SIL G LV+ L++GA+ + + + + L + + L G+ + +
Sbjct: 380 LLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439
Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGS 359
+ L D + + + P ++ I +++ F + + +NLSFTI G
Sbjct: 440 RVFELMDRKPRIPLTGTLA-PDHLQ---GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE 495
Query: 360 CCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP 419
+ GPSG GKS +L G I IS + +IG + Q LF
Sbjct: 496 VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555
Query: 420 ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL-- 477
SI ENI D + + AK+ HE I + +GY T + QK R+
Sbjct: 556 GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615
Query: 478 SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528
+R + NP +L++DE LD E++ L + + + +VI T+
Sbjct: 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV 666
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 105 bits (263), Expect = 4e-23
Identities = 75/334 (22%), Positives = 128/334 (38%), Gaps = 25/334 (7%)
Query: 218 RATSQEYQSLIAKKYYFGISVTKTLRMTLQSS--------------ILGIGAWLVIHQKL 263
T + + F + LR+ SS + IG L+ L
Sbjct: 196 GRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDL 255
Query: 264 SAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPIS 323
+ A + I+ PL + + + G + L L + S K E
Sbjct: 256 TLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA- 314
Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
I+ +N+ FR + +L+ TI G + G SG GKS L +LG L
Sbjct: 315 -NEPPIEISLENLSFRYPDGKPAL-SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372
Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443
+G I + E + QI ++SQ+ LF +I ENI+L+ S
Sbjct: 373 PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALD 432
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDN 499
G + + +G T E + Q++ L+R + + ++LL+DEP HLD
Sbjct: 433 QAGL-LEFVPKPDGLDTVI--GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489
Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533
E + L++ + KT+++I+H + +D
Sbjct: 490 ETEQIILQALQELAKQ-KTVLVITHRLEDAADAD 522
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 105 bits (263), Expect = 4e-23
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
+LS T+ G + GPSGCGK+ L + GL + G I R ++ E+ IG
Sbjct: 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIG 75
Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468
+ Q +LFP +++ ENI + A+ A++ E + + E+
Sbjct: 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARV---RELLELVGLEGLLNRYPHELS 132
Query: 469 YNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISHDPT 527
Q++ L+R +A P++LL+DEPL LD + + LK+ +E T + ++HD
Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
Query: 528 -IISMSDFSLIFH 539
++++D + +
Sbjct: 193 EALALADRIAVMN 205
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 104 bits (261), Expect = 7e-23
Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
++++ ++ +G I GPSGCGKS L + GL G + R ++ I
Sbjct: 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74
Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTYCSD 465
GY+ Q +L P +++ +N+ L + A+ + +++L L G++ Y
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERA----KELLELVGLAGFEDKYP-H 129
Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISH 524
++ + Q++ ++R +A P +LL+DEP LD + L + ++E +KT+++++H
Sbjct: 130 QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189
Query: 525 DPT-IISMSD 533
D + ++D
Sbjct: 190 DVDEAVYLAD 199
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 103 bits (259), Expect = 1e-22
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
+ +++SF + G I GP+G GKS L +LGLL G+I + + ++
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE---- 66
Query: 404 FSAQIGYLSQHCSL---FPISITE----------NIILSHDQNSLHIAQKTAKIVGC--- 447
+IGY+ Q S+ FPIS+ + + + + + VG
Sbjct: 67 -RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125
Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
I L G Q Q++ L+R + +P +LL+DEP +D + + + Y
Sbjct: 126 ADRQIGELSGGQQ-------------QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172
Query: 507 TLLKQFKENKKTIVIISHDPTIIS 530
LL++ + TI++++HD ++
Sbjct: 173 ELLRELRREGMTILVVTHDLGLVL 196
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 103 bits (259), Expect = 1e-22
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 13/215 (6%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ F N+S TI G I G G GKS L + GL G++
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 391 FGD---RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447
RQ+ + + IGY+ Q +LF ++ +NI L + A++ G
Sbjct: 63 LDGTDIRQLDPADLRR---NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
+ + NG E + Q + L+R + N+P ILL+DEP +D ++
Sbjct: 120 TDFVNKHPNGLDLQI--GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 504 NFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIF 538
L+Q + KT++II+H P+++ + D ++
Sbjct: 178 RLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVM 211
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 102 bits (257), Expect = 2e-22
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 41/180 (22%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR--DFIEKFSAQ 407
++S I G + GPSG GKS L C+ GL + G+I ++ D + +
Sbjct: 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77
Query: 408 IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466
IG + Q +LFP +++ ENI L L G Q
Sbjct: 78 IGMVFQDFALFPHLTVLENI------------------------ALGLSGGQQ------- 106
Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525
Q++ L+R +A +P +LL+DEP LD + LLK + T+V+++HD
Sbjct: 107 ------QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 101 bits (252), Expect = 6e-22
Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 30/477 (6%)
Query: 84 SHLIERFFK---PYIITVTKKYEMDGTSLFSIISSLDQLKQF---ITSPVLPALLDILFT 137
S L R F+ P + +Y G L +++ +D L + +P + AL+ I
Sbjct: 91 SALRVRLFEKLEPLSPALLLRYR-SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVV 149
Query: 138 PIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFGKAILHN 197
I LSF L A+L G++LL + ++ L R + + G+A L +
Sbjct: 150 TIG--LSF-FSIPL---ALLLGLILLLLLLIIPT----LFYRAGRKFGAHLAQGRAALRS 199
Query: 198 SEYIYAPSTRDFLL-----TYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILG 252
+ + L+ Y AT + K+ F L + ++G
Sbjct: 200 QFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG 259
Query: 253 IGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLL 312
+ W+ A A ++ A LE L + + + +L
Sbjct: 260 LLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLG--QVIASARRLNDIL 317
Query: 313 NSSDSKKEPIS-MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371
+ P + + +N+ F +N + T+ +G I G SG GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431
S L + G ++G+I+ +I+ + I L+Q LF ++ +N+ L++
Sbjct: 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437
Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILL 489
S + VG + + S +G T + ++ RL +R + ++ + L
Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF 546
+DEP LD + LL + E KT+++++H + I G +
Sbjct: 498 LDEPTEGLDPITERQVLALLFEHAEG-KTLLMVTHRLR--GLERMDRIIVLDNGKII 551
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 101 bits (252), Expect = 8e-22
Identities = 106/546 (19%), Positives = 201/546 (36%), Gaps = 50/546 (9%)
Query: 18 FCITILPSFFI----NILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFF--- 70
+ P+ + IL + P I D + + N LSTIT L
Sbjct: 28 LRFRVFPALGLLLGAKILNVQVPFIFKLIIDGL--NDADGNPAVLSTITALLAGYGIARL 85
Query: 71 ---GFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLF------SIISSLDQLKQ 121
F+ +R + + +R + V + S F ++ +D+ +
Sbjct: 86 GSSVFNELR---NFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSR 142
Query: 122 FITSPVLPALLDILFTPIFIILSFCI-HPILGSWAILSGILLLTITILFQANNERLERRY 180
I+ + + +I+ T I L I + G+ L + + F R R+
Sbjct: 143 AISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202
Query: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240
+K+ + N ++S Y ++ +N + + Y + G+ +
Sbjct: 203 RKAMNNADNSASRRAYDSLINYE------IVKSFNNEEYEASRYDGSLKTYERAGLKYSS 256
Query: 241 TLRMT--LQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKS 298
+L Q +I + ++ + IA +T + + ++ L++ L
Sbjct: 257 SLAFLNFGQKAIFSVALTFIMVLGSNG---IAAGKMTVGDLVMVNSLLFQ---LSLPLNF 310
Query: 299 LK--------YLINLNDFTTLLNS-SDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQ 349
L L ++ LL D ++ + + L +I ++ F R + +
Sbjct: 311 LGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFS-YGPKRKVLK 369
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
+SFTIP+G I G +G GKS L +L G+I + I +E IG
Sbjct: 370 GVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428
Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY--CSDEI 467
+ Q LF +I NI + S + K G H+ I L +GYQT +
Sbjct: 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488
Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT 527
Q++ L+R + ILL+DE LD+E + ++ + +T+++I H
Sbjct: 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD 547
Query: 528 IISMSD 533
++ D
Sbjct: 548 LLKDFD 553
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 99.1 bits (247), Expect = 3e-21
Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 31/212 (14%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ +N+ F + I +LSF+IP+G I GP+G GKS L C+ GLL + G +
Sbjct: 3 LEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQ-HCSLFPISITENIIL----------SHDQNSLHIAQ 439
+ I+ ++ + ++ Y+ Q + F +++ E ++L + I +
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120
Query: 440 KTAKIVGCHE----DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLY 495
+ +++G + L G + Q++ ++R +A ILL+DEP
Sbjct: 121 EALELLGLEHLADRPVDELSGGER-------------QRVLIARALAQETPILLLDEPTS 167
Query: 496 HLDNEAKNNFYTLLKQF-KENKKTIVIISHDP 526
HLD + LL+ +E T+V++ HD
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 97.9 bits (244), Expect = 6e-21
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 19/215 (8%)
Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
I KN+ + + +S +I +G I GPSG GKS L + GL G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 389 ISFGDRQISR---DFIEKFSA-QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443
+ IS+ + F IG++ Q +L P ++ EN+ L L +A K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKK 115
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDN 499
E L + P + Q++ ++R +AN+P I+L DEP +LD+
Sbjct: 116 --ERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSD 533
E LL++ KE TIV+++HDP + +D
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYAD 208
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 97.9 bits (244), Expect = 6e-21
Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
I KN+ ++ ++++ I G I GPSG GKS L + GL G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 389 ISFGDRQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443
+ + +++ ++ + +IG++ Q+ +L P +++ EN+ L ++
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDN 499
E++L + + P + Q++ ++R + NNP I+L DEP +LD+
Sbjct: 122 A----EELLEVLGLEDRLL--KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSD 533
+ LL++ KE KTI++++HDP + +D
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 98.0 bits (244), Expect = 6e-21
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 4/211 (1%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ F + + + ++++F+I G I GP+G GK+ + ++ +KG I
Sbjct: 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
I + + IG + Q LF +I ENI L + + AK G H+
Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF 121
Query: 451 ILSLKNGYQTTYC--SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
I+ L NGY T + Q + ++R + +P IL++DE ++D E +
Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181
Query: 509 LKQFKENKKTIVIISHDPTIISMSDFSLIFH 539
L++ + +T +II+H + I +D L+
Sbjct: 182 LEKLMKG-RTSIIIAHRLSTIKNADKILVLD 211
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 97.8 bits (243), Expect = 7e-21
Identities = 91/431 (21%), Positives = 162/431 (37%), Gaps = 34/431 (7%)
Query: 114 SSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANN 173
+S L +++ + P LLD+ ++ + F I G L +L +TI
Sbjct: 326 TSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIW--FGLIVFLMMLLYCYVTIKITEWR 383
Query: 174 ERLERRYKKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAK--K 231
+ R+ S + L N E + Y+N + + Y+ I K K
Sbjct: 384 TKARRKMNNSWNESRARQVDSLLNFETV----------KYYNAEDYEVERYREAILKYQK 433
Query: 232 YYFGISVTKTLRMTLQSSILGIG--------AWLVIHQKLSAGAIIATSIITARAMAPLE 283
+ + +Q+ I+G+G A+ V Q L+ G + + PL
Sbjct: 434 QEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLN 493
Query: 284 QIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKE---PISMRLSNNTITAKNIVFRD 340
+S+ K I++ + LL + ++++ I N+ F
Sbjct: 494 FFGTYYRSIQ------KNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTF-A 546
Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF 400
+ + ++SFT+ G + GPSG GKS + + + G+I+ + I
Sbjct: 547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606
Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
+ IG + Q LF +I NI + S AK H+ IL GY T
Sbjct: 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666
Query: 461 TYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
++ Q++ ++R I P+I+L+DE LD + L + N+ T
Sbjct: 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTT 726
Query: 519 IVIISHDPTII 529
IV+ TI+
Sbjct: 727 IVVAHRLSTIV 737
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 96.0 bits (239), Expect = 3e-20
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 35/227 (15%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQI--SRD 399
+++S IP+G + GPSGCGKS L + L L G + + I
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 400 FIEKFSAQIGYLSQHCSLFPISITENIIL------SHDQNSLH-IAQKTAKIVGCHEDI- 451
+ + ++G + Q + FP SI +N+ + L ++ + +++
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK 134
Query: 452 -----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
L L G Q Q++ L+R +AN P +LL+DEP LD +
Sbjct: 135 DRLHALGLSGGQQ-------------QRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181
Query: 507 TLLKQFKENKKTIVIISHDP-TIISMSDFSLIFHPIQGSLFGLTQDI 552
L+ + K+ + TIVI++H+ ++D + + FG T+ I
Sbjct: 182 ELIAELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 94.2 bits (234), Expect = 8e-20
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 13/201 (6%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ R + +++ TI EG ++ GPSG GK+ L + L+ G I
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449
IS + +IGY+ Q LFP +++ ENI + + +
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA----D 115
Query: 450 DILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
++L L + Y D P+ + Q++ ++R +A +P ILLMDEP LD +
Sbjct: 116 ELLDLVGLDPSEYA-DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 506 YTLLKQF-KENKKTIVIISHD 525
+K+ KE KTIV ++HD
Sbjct: 175 QEEIKELQKELGKTIVFVTHD 195
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 93.6 bits (233), Expect = 1e-19
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
+N+ R + +LS +I G I GP+G GKS L + GLL G I
Sbjct: 1 EVENLSVG--YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451
+ ++ ++ + +I Y+ Q L + H+A +
Sbjct: 59 DGKDLASLSPKELARKIAYVPQALELLGL--------------AHLADR---------PF 95
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
L G + Q++ L+R +A P ILL+DEP HLD + LL++
Sbjct: 96 NELSGGER-------------QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142
Query: 512 F-KENKKTIVIISHDPTIISM 531
+E KT+V++ HD + +
Sbjct: 143 LARERGKTVVMVLHDLNLAAR 163
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 93.3 bits (232), Expect = 2e-19
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ KN+ FR + +++S IP G + GPSG GKS + + ++ G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 391 FGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449
+ RD+ + QIG +SQ LF ++ ENI + ++ A+ HE
Sbjct: 61 IDGHDV-RDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYT 507
I+ L GY T + + Q+ R++ R + +P IL++DE LD E++
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 508 LLKQFKENKKTIVI------ISHDPTIISMSD 533
L++ +N+ T VI I + I+ + D
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLED 211
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 92.3 bits (229), Expect = 3e-19
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 16/203 (7%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I A+N+ FR + +++S I +G ++ GP+G GKS L + GLL G +
Sbjct: 4 IEAENLSFR-YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 391 FGDRQIS-RDFIEKFSAQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447
S + + ++G + Q LF ++ + + + L + ++
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERV--- 119
Query: 448 HEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
+ L L + D P+N+ Q++ ++ ++A P ILL+DEP LD + +
Sbjct: 120 -AEALELVGLEEL---LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 504 NFYTLLKQFK-ENKKTIVIISHD 525
LLK+ K E KTI+I++HD
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHD 198
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 92.3 bits (229), Expect = 4e-19
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 3/205 (1%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
IT +++ FR K +I N+S I G I G SG GKS + E G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
++ Q+G + Q LF SI +NI L+ S+ + AK+ G H+
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 451 ILSLKNGYQTTYCSDEIPYN--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
I L GY T + Q+I ++R + +NP IL+ DE LD E+++
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 509 LKQFKENKKTIVIISHDPTIISMSD 533
+ +T++II+H + + +D
Sbjct: 181 MHDICAG-RTVIIIAHRLSTVKNAD 204
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 91.9 bits (228), Expect = 4e-19
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 55/198 (27%)
Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
+N+ FR R N+S T+ G + GP+G GKS L + GLL G I
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451
+ I++ +E+ +IGY+ Q LS Q
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ--------------LSGGQ------------------- 85
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
Q++ L+R + NP +LL+DEP LD ++ LL++
Sbjct: 86 --------------------RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 512 FKENKKTIVIISHDPTII 529
E +T++I++HDP +
Sbjct: 126 LAEEGRTVIIVTHDPELA 143
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 91.5 bits (227), Expect = 5e-19
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
+ KN+ L ++++ I +G ++ GPSGCGKS L + GL G I
Sbjct: 3 ELELKNVRKSFGSFEVL--KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 390 SFGDRQIS------RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442
R ++ R I + Q+ +L+P +++ ENI + +
Sbjct: 61 LIDGRDVTDLPPEKRG--------IAMVFQNYALYPHMTVYENIAFG-LKLRGVPKAEID 111
Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
K V +L L++ ++ Q++ L+R + P + L+DEPL +LD + +
Sbjct: 112 KRVKEVAKLLGLEHLLNR--KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169
Query: 503 NNFYTLLKQFKEN-KKTIVIISHDPT-IISMSD 533
+ +K+ E T + ++HD ++++D
Sbjct: 170 VLMRSEIKKLHERLGTTTIYVTHDQVEAMTLAD 202
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 91.2 bits (227), Expect = 7e-19
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 43/196 (21%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ R K + ++S T+ +G + GP+G GK+ + +LGLL + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449
+ I ++ E+ +IGYL + SL+ +++ EN+ LS
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK---------------- 101
Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
Q++ L++ + ++P +L++DEP LD E++ F+ LL
Sbjct: 102 -----------------------QRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138
Query: 510 KQFKENKKTIVIISHD 525
++ K+ KTI++ SH
Sbjct: 139 RELKKEGKTILLSSHI 154
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 90.6 bits (225), Expect = 1e-18
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 26/190 (13%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF-IEKFSAQ 407
+ +S ++ +G +I GPSG GKS L C+ GL + G+I+ + I K +
Sbjct: 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78
Query: 408 IGYLSQHCSLFP-ISITENIILS-------HDQNSLHIAQKTAKIVGCHEDI----LSLK 455
+G + Q +LFP +++ EN+ L+ + A + + VG + L
Sbjct: 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLS 138
Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
G Q Q++ ++R +A +P ++L DEP LD E ++K E
Sbjct: 139 GGQQ-------------QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 516 KKTIVIISHD 525
T++I++H+
Sbjct: 186 GMTMIIVTHE 195
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 90.0 bits (223), Expect = 2e-18
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407
++S I G + GPSG GKS L + GL T + G I R + + + +
Sbjct: 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD--VSNLAVRD 76
Query: 408 --IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
+G++ QH +LFP +++ +NI ++ + + L Q +
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-----ARVEELLRLVQLEGLA 131
Query: 465 DEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519
D P + Q++ L+R +A P +LL+DEP LD + + L++ + T
Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 520 VIISHDP 526
V ++HD
Sbjct: 192 VFVTHDQ 198
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 90.1 bits (223), Expect = 2e-18
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 15/202 (7%)
Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389
+ K + I N+S ++ G I GPSGCGKS L + L++ GT+
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENII----LSHDQNSLHIAQKTAKIV 445
F +S E + Q+ Y +Q +LF ++ +N+I + + + A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
+ IL+ E+ Q+I L R + P ILL+DE LD K N
Sbjct: 121 ALPDSILTKN--------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 506 YT-LLKQFKENKKTIVIISHDP 526
+ + +E ++ I+HD
Sbjct: 173 EEMIHRYVREQNVAVLWITHDK 194
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 89.8 bits (223), Expect = 2e-18
Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDF 400
R + + + + G I GPSG GKS L ++GLL + G + I S
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 401 IEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459
+ + ++G L Q +LF +++ EN+ +++ ++ +IV + + L+ G +
Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAE 130
Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-T 518
Y + E+ + +++ L+R +A +P +LL DEP LD A L++ K+ T
Sbjct: 131 DLYPA-ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 519 IVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFK 554
++++HD T +++D + + + G +++
Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 89.9 bits (223), Expect = 2e-18
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 7/204 (3%)
Query: 336 IVFRDKK----TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
I F + R + +++SFTIP G I GPSG GKS L + + G+I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451
+ I ++ IG + Q LF +I NI + + AK H+ I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509
+ +GY T + + +K R++ R I NP ILL+DE LD + L
Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180
Query: 510 KQFKENKKTIVIISHDPTIISMSD 533
+ + +T ++I+H + I +D
Sbjct: 181 RDVSKG-RTTIVIAHRLSTIVNAD 203
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 89.1 bits (221), Expect = 3e-18
Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 23/223 (10%)
Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
I + + R+I + +P G I G SG GKS L +LGLL
Sbjct: 2 SASPEPLIEVRGVTKS--FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59
Query: 384 LEKGTIS-FGD--RQISRDFIEKFSAQIGYLSQHCSLF-PISITENI---ILSHDQNSLH 436
+KG I G+ Q+S + + + ++G L Q +LF +++ EN+ + H +
Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119
Query: 437 IAQKTA----KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDE 492
+ ++ ++VG L E+ + +++ L+R IA +P +L +DE
Sbjct: 120 LIRELVLMKLELVGLRGAAADLY--------PSELSGGMRKRVALARAIALDPELLFLDE 171
Query: 493 PLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD-PTIISMSD 533
P LD + L+++ + T+++++HD ++++++D
Sbjct: 172 PTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD 214
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 88.8 bits (220), Expect = 3e-18
Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
++S I +G + GPSGCGK+ L + G G I I+ EK I
Sbjct: 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79
Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK--IVGCHEDILSLKN--GYQTTYC 463
G + Q +LFP +++ EN+ L + +K K I E+ L L G+
Sbjct: 80 GMVFQSYALFPHMTVEENV-----AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK-KTIVII 522
++ Q++ L+R + P +LL+DEPL LD + + LK+ + T V +
Sbjct: 135 H-QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV 193
Query: 523 SHDPT-IISMSD 533
+HD ++MSD
Sbjct: 194 THDQEEALAMSD 205
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 87.5 bits (217), Expect = 8e-18
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 22/220 (10%)
Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR 394
++ F S ++SF+I +G + G SG GKS +LGLL G+I F +
Sbjct: 8 SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67
Query: 395 QI---SRDFIEKFSAQIGYLSQH--CSLFPI-SITENI---ILSHDQNSLHIAQKTAKIV 445
+ SR + +I + Q SL P +I E I + H + S A+K A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-- 125
Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEA 501
+L L + P+ + Q++ ++R +A NP +L+ DEP LD
Sbjct: 126 -----LLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 502 KNNFYTLLKQFK-ENKKTIVIISHDPTIIS-MSDFSLIFH 539
+ LLK+ + E T++ I+HD +++ ++D + +
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 87.1 bits (216), Expect = 1e-17
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 27/191 (14%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSA 406
+ + T+ +G +I GPSG GKS L C+ L + GTI ++ + I +
Sbjct: 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ 76
Query: 407 QIGYLSQHCSLFP-ISITENIILS-------HDQNSLHIAQKTAKIVGCHEDI----LSL 454
++G + Q +LFP +++ ENI L+ + A + + VG + L
Sbjct: 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQL 136
Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
G Q Q++ ++R +A NP ++L DEP LD E ++K E
Sbjct: 137 SGGQQ-------------QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 515 NKKTIVIISHD 525
T+V+++H+
Sbjct: 184 EGMTMVVVTHE 194
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 85.8 bits (212), Expect = 3e-17
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 12/217 (5%)
Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
I +N+ + + +SF + G + GP+G GK+ L + GLL G
Sbjct: 2 IEVIEVRNLTKKYGGDKTAL-DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVG 446
I + ++ K +IGY+ Q SL+P +++ EN+ L + +I
Sbjct: 61 EILVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI-- 117
Query: 447 CHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
E++L L + + Q++ ++ + ++P +L++DEP LD E++
Sbjct: 118 --EELLELFGLEDKANKKVR-TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174
Query: 505 FYTLLKQFK-ENKKTIVIISHDP-TIISMSDFSLIFH 539
+ LL++ E TI++ +H + D +I +
Sbjct: 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 84.9 bits (210), Expect = 5e-17
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 12/201 (5%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ R + + NL+ I +G ++ GPSG GK+ + + L+ G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449
I + +IGY+ Q LFP +++ ENI L + + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERA----D 115
Query: 450 DILSLKN----GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505
++L+L + Y E+ Q++ ++R +A +P +LLMDEP LD ++
Sbjct: 116 ELLALVGLDPAEFADRY-PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 506 YTLLKQFKEN-KKTIVIISHD 525
K+ ++ KTIV ++HD
Sbjct: 175 QEEFKRLQQELGKTIVFVTHD 195
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 84.9 bits (210), Expect = 5e-17
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 341 KKTSRLI-CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-- 397
KKT + + ++S + EG +I G SG GKS L C+ L+ G + + I+
Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM 91
Query: 398 --RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHD------QNSLHIAQKTAKIVGCH 448
++ E +I + Q +L P ++ EN+ + A + ++VG
Sbjct: 92 SRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE 151
Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT- 507
G++ Y DE+ + Q++ L+R +A +P ILLMDE LD +
Sbjct: 152 --------GWEHKY-PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 508 LLKQFKENKKTIVIISHDP 526
LL+ E +KTIV I+HD
Sbjct: 203 LLRLQAELQKTIVFITHDL 221
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 85.0 bits (210), Expect = 5e-17
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR----DFIEK 403
+ S + EG +I G SG GKS + + L+ +G I + I++ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQT 460
+I + Q +L P ++ EN+ + + A++ + + L L GY
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA----LEALELVGLEGYAD 159
Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTI 519
Y +E+ + Q++ L+R +AN+P ILLMDE LD + L + + KKTI
Sbjct: 160 KY-PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218
Query: 520 VIISHD 525
V I+HD
Sbjct: 219 VFITHD 224
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 84.9 bits (210), Expect = 5e-17
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 12/184 (6%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--QISRDFIEKFSAQ 407
+ F + E I G SG GKS L C+ GL + GTI SR I Q
Sbjct: 16 KIDFDLNEEVTGIF-GASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 408 --IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
IG + Q +LFP +++ EN+ + + + + + L N Y
Sbjct: 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSG 134
Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523
E Q++ L+R +A P +LL+DEP LD + LKQ K+N ++ ++
Sbjct: 135 GE-----KQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 524 HDPT 527
HD +
Sbjct: 190 HDLS 193
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 84.4 bits (209), Expect = 7e-17
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 40/229 (17%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTISFGDRQISRDFIE- 402
++++ IP+ + GPSGCGKS L C+ + L +G + + I ++
Sbjct: 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83
Query: 403 -KFSAQIGYLSQHCSLFPISITENIIL------SHDQNSLHIAQKTAKIVG--------C 447
+ ++G + Q + FP+SI +N+ D+ I + + K
Sbjct: 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRL 143
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
H+ L L G Q Q++ ++R +A P +LLMDEP LD +
Sbjct: 144 HKSALGLSGGQQ-------------QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190
Query: 508 LLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553
L+ + K+ TIVI++H+ + +SD++ F+ G L FG T IF
Sbjct: 191 LITELKKK-YTIVIVTHNMQQAARVSDYTAFFY--LGELVEFGPTDKIF 236
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 83.7 bits (207), Expect = 1e-16
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
+ +S I EG + GPSGCGK+ L + G T G I + I+ +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN--LPPHK 71
Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTY 462
+ + Q+ +LFP +++ ENI L A+ ++ + L L GY
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERV----AEALDLVQLEGYANRK 127
Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521
++ Q++ ++R + N P +LL+DEPL LD + + + LK+ KE T V
Sbjct: 128 -PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 522 ISHDPT-IISMSDFSLIFHPIQGSL--FGLTQDIF 553
++HD ++MSD + + +G + G ++I+
Sbjct: 187 VTHDQEEALTMSDRIAVMN--KGKIQQIGTPEEIY 219
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 83.0 bits (205), Expect = 2e-16
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 21/206 (10%)
Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
+NI F KK + ++ +LS + G + G +G GK+ + GL+ G+I
Sbjct: 1 RIENISFSYKKGTEIL-DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 392 GDRQISRDFIEKFSAQIGYLSQHCS--LFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449
+ I E+ + IGY+ Q LF S+ E ++L + Q E
Sbjct: 60 NGKPIKAK--ERRKS-IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--------E 108
Query: 450 DILSLKNGYQTTYCSDEIPYNIV--QKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNF 505
+L + Y + P ++ QK RL + + + +L+ DEP LD +
Sbjct: 109 TVLKDLDLYAL---KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
Query: 506 YTLLKQFKENKKTIVIISHDPTIISM 531
L+++ K +++I+HD ++
Sbjct: 166 GELIRELAAQGKAVIVITHDYEFLAK 191
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 82.6 bits (204), Expect = 3e-16
Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 20/237 (8%)
Query: 330 TITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
++ +N+ V+ K + N+S I G I G SG GKS + GL G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 388 TISF-GDRQISRDFIEKFSAQIGYLSQH--CSLFPISITENIIL-SHDQNSLHI----AQ 439
+I G + + F + + Q SL P I+ + L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
+ VG L + E+ Q+I ++R + P +L++DEP LD
Sbjct: 123 ELLDQVGLPPSFLDRR--------PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 500 EAKNNFYTLLKQFKENKK-TIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDIFK 554
+ LL + K+ + T + ISHD ++ M D + Q G T+++
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 82.5 bits (204), Expect = 3e-16
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR--- 398
R +++SF IP+G + GPSG GKS L + G +G I +SR
Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71
Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKT----AKIVGCHEDILS 453
I QIG + Q L P ++ EN+ L L + K + V D++
Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVAL-----PLRVIGKPPREIRRRVSEVLDLVG 126
Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
LK+ + ++ Q++ ++R I N PA+LL DEP +LD + L ++
Sbjct: 127 LKH--KARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 514 ENKKTIVIISHDPTIIS 530
T+++ +HD +++
Sbjct: 185 RLGTTVLMATHDLELVN 201
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 82.6 bits (204), Expect = 3e-16
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
++S IP G + GPSG GK+ L + GL + GTI FG + +++ +G
Sbjct: 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVG 77
Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468
++ QH +LF +++ +N+ A+I ++L L Q + +D P
Sbjct: 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL---VQLDWLADRYP 134
Query: 469 YNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIIS 523
+ Q++ L+R +A P +LL+DEP LD + + L++ E T V ++
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194
Query: 524 HD 525
HD
Sbjct: 195 HD 196
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 82.1 bits (203), Expect = 4e-16
Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 331 ITAKNIVFR---DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
I+ ++ F ++ + ++++ +P+G I GP G GKS+ L +LG L G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447
++S I Y+SQ + +I ENI+ + ++ K++
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDE----ERYEKVIKA 103
Query: 448 ---HEDILSLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHL 497
D+ L +G T EI + Q+I L+R + ++ I L+D+PL +
Sbjct: 104 CALEPDLEILPDGDLT-----EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158
Query: 498 DNE-AKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537
D ++ F + N KT ++++H ++ +D ++
Sbjct: 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVV 199
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 80.6 bits (199), Expect = 1e-15
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
N+S + G +I GP+G GKS L + G + + G I + I+ EK I
Sbjct: 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDIS 74
Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHED--ILSLKNGYQTTYCSDE 466
Y+ Q+ +LFP +++ +NI + + + K++ E I L N T E
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGE 134
Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHD 525
Q++ ++R + NP ILL+DEP LD K LK+ ++ V+ ++HD
Sbjct: 135 -----QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
Query: 526 PT-IISMSDFSLIFHPIQGSL--FGLTQDIFK 554
+++D I + G L G +++FK
Sbjct: 190 FEEAWALADKVAIM--LNGKLIQVGKPEEVFK 219
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 80.2 bits (198), Expect = 1e-15
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
I KN+ VF D +++S ++P+G I G SG GKS + C+ GL G+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 389 ISFGDR---QISRDFIEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKI 444
+ +S + K +IG + QH +L ++ EN+ L + + A+ ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNE 500
++L L +D P + Q++ ++R +ANNP +LL DE LD E
Sbjct: 122 ----LELLELVGLEDK---ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 501 AKNNFYTLLKQF-KENKKTIVIISH 524
+ LL+ +E TIV+I+H
Sbjct: 175 TTQSILALLRDINRELGLTIVLITH 199
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 80.1 bits (198), Expect = 1e-15
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 41/197 (20%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407
+++SF + G IAG G G++ + GL G I+ + ++ R + A
Sbjct: 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76
Query: 408 IGYLS---QHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
I Y+ + L S+ ENI LS +LS N
Sbjct: 77 IAYVPEDRKREGLVLDLSVAENIALSS--------------------LLSGGN------- 109
Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
QK+ L+R +A +P +L++DEP +D AK Y L+++ + K +++IS
Sbjct: 110 --------QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 524 HD-PTIISMSDFSLIFH 539
+ ++ + D L+ +
Sbjct: 162 SELDELLGLCDRILVMY 178
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 79.7 bits (197), Expect = 2e-15
Identities = 42/188 (22%), Positives = 89/188 (47%), Gaps = 13/188 (6%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407
++SF++ G + GP+G GK+ + G L G++ F I+ + +
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
Query: 408 IGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHE------DILSLKNG 457
IG Q LFP +++ EN+++ + + L +A+ + E + + L +
Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
+ E+ Y +++ ++R +A +P +LL+DEP L+ E L+++ +E
Sbjct: 137 ADRP--AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194
Query: 518 TIVIISHD 525
T++++ HD
Sbjct: 195 TVLLVEHD 202
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 79.0 bits (195), Expect = 3e-15
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407
+++SFT+ G IAG G G++ + G G I + + R + A
Sbjct: 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335
Query: 408 IGYLS---QHCSLFPI-SITENIILSHDQNSL----------------HIAQKTAKIVGC 447
I Y+ + L SI ENI L+ + +I + K
Sbjct: 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP 395
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
+ I +L G Q QK+ L+R +A +P +L++DEP +D AK Y
Sbjct: 396 EQPIGTLSGGNQ-------------QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442
Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFH 539
L+++ K I++IS + P ++ +SD L+
Sbjct: 443 LIRELAAEGKAILMISSELPELLGLSDRILVMR 475
Score = 67.9 bits (166), Expect = 7e-12
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 29/191 (15%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408
+S T+ G + G +G GKS + + G+ + G I + ++ + +A I
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85
Query: 409 GYLSQHCSLFP-ISITENIILSH---------DQNSLH-IAQKTAKIVGCHED----ILS 453
+ Q SL P +S+ ENI L D+ ++ A++ +G D +
Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD 145
Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513
L + Q + ++R ++ + +L++DEP L + + L+++ K
Sbjct: 146 LSIAQR-------------QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 514 ENKKTIVIISH 524
I+ ISH
Sbjct: 193 AQGVAIIYISH 203
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 79.1 bits (195), Expect = 3e-15
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 39/246 (15%)
Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTIS 390
+ F +++SF + G I G SG GKS L ++GLL + G +
Sbjct: 12 TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 391 FGDRQIS----RDFIEKFSAQIGYLSQH--CSLFPISITENII----LSHDQNSLHIAQK 440
R + R+ + +I + Q SL P+ + I H + S A+K
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK 131
Query: 441 TA----KIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDE 492
A + VG + D P+ + Q++ ++ +A P +L+ DE
Sbjct: 132 RAVELLEQVGLPDPER-----------RDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180
Query: 493 PLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLF--GL 548
P LD + LLK +E ++ I+HD +++ ++D ++ + +G + G
Sbjct: 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY--KGEIVETGP 238
Query: 549 TQDIFK 554
T++I
Sbjct: 239 TEEILS 244
Score = 77.9 bits (192), Expect = 7e-15
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%)
Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393
+ +F ++ ++SF + EG + G SG GKS + GLL G+I F
Sbjct: 293 RKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352
Query: 394 RQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCH 448
+ + E Q+ + + SL P +++ + + + + V
Sbjct: 353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL 412
Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
+++ L + Y E+ Q++ ++R +A P +L++DEP+ LD + L
Sbjct: 413 LELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471
Query: 509 LKQF-KENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIFKF 555
LK +E T + ISHD + ++D + + G + G T+ +F+
Sbjct: 472 LKDLQEELGLTYLFISHDLAVVRYIADRVAVMY--DGRIVEEGPTEKVFEN 520
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 77.9 bits (192), Expect = 7e-15
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
+ +L+ I +G ++ GPSGCGK+ L + GL G I G R ++ +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD--LPP 69
Query: 404 FSAQIGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQK---TAKIVGCHEDILS--- 453
I + Q+ +L+P +++ +NI I ++ A+++ E +L
Sbjct: 70 KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-EHLLDRKP 128
Query: 454 --LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
L G + Q++ L R I P + LMDEPL +LD + + LK+
Sbjct: 129 KQLSGGQR-------------QRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 512 F-KENKKTIVIISHDPT-IISMSD 533
+ T + ++HD ++M+D
Sbjct: 176 LQQRLGTTTIYVTHDQVEAMTMAD 199
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 77.9 bits (192), Expect = 7e-15
Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 32/249 (12%)
Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
I KN+ + ++++ I +G I GPSG GKS L + GL+ G
Sbjct: 4 IEVKNLSKTYPGGHQ---ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 389 ISFGDRQISR---DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN--------SLH 436
I F QI++ + K IG + Q +L P +S+ EN++L L
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 437 IAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496
+ A+ + E + L YQ + Q++ ++R + P I+L DEP+
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRA---STLSGGQQQRVAIARALVQQPKIILADEPVAS 177
Query: 497 LDNEAKNNFYTLLKQF-KENKKTIVIISHD--------PTIISMSDFSLIFHPIQGSLFG 547
LD E+ +LK +E+ T+++ H II + ++F G
Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF---DGPASE 234
Query: 548 LTQDIFKFN 556
LT +
Sbjct: 235 LTDEALDEI 243
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 77.2 bits (190), Expect = 1e-14
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS---RDFIEKFSA 406
++ +I G + GPSG GKS L + GTI + +S I
Sbjct: 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78
Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
+IG + Q L P ++ EN+ + + + ++ K V +++ L +
Sbjct: 79 KIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVPAALELVGLSHK------HR 131
Query: 466 EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521
+P + Q++ ++R I N+P IL+ DEP +LD + LLK+ + T+V+
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
Query: 522 ISHDPTII 529
+H ++
Sbjct: 192 ATHAKELV 199
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 76.3 bits (188), Expect = 2e-14
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEK 403
++S ++ +G + G +G GKS + + GL + G I +++ RD I
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI-- 77
Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNS---LHIAQKTAKIVGCHEDILSLKNGYQ 459
IG + QH L P +++ ENIIL + + + Q A+I LS + G
Sbjct: 78 -RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-----KELSERYGLP 131
Query: 460 ---TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
+D + Q++ + + + +L++DEP L + + + +L++
Sbjct: 132 VDPDAKVAD-LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190
Query: 517 KTIVIISH 524
KTI+ I+H
Sbjct: 191 KTIIFITH 198
Score = 52.8 bits (127), Expect = 2e-07
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 38/210 (18%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF-GDRQISRDFIEKFSAQ 407
+++SF + G IAG +G G+S + + GL G I G + R +
Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334
Query: 408 -IGYLS----QHCSLFPISITENIILSHDQNSLH----------IAQKTAKIV------- 445
+ Y+ H + +S+ EN++L I + +++
Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394
Query: 446 -GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504
SL G Q QK+ L+R +A P +L+ +P LD A
Sbjct: 395 PSPDAPARSLSGGNQ-------------QKLILARELARRPDLLIAAQPTRGLDVGAIEF 441
Query: 505 FYTLLKQFKENKKTIVIISHD-PTIISMSD 533
+ L + ++ K +++IS D I+ +SD
Sbjct: 442 IHERLLELRDAGKAVLLISEDLDEILELSD 471
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 76.1 bits (187), Expect = 2e-14
Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 41/221 (18%)
Query: 320 EPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379
P RL + +N+ RL+ ++LSF I G I GP+G GKS L +
Sbjct: 311 PPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 380 GLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCS-LFPI-SITENIILSHDQNSLHI 437
G L GT+ G+ + +IGY QH L P ++ E + +
Sbjct: 370 GELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEEL---SEGFPDGD 415
Query: 438 AQKTAKIVGC--------HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILL 489
Q+ +G + + L G + ++ L++++ P +LL
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA-------------RLLLAKLLLQPPNLLL 462
Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530
+DEP HLD E+ L F+ T++++SHD +
Sbjct: 463 LDEPTNHLDIESLEALEEALLDFEG---TVLLVSHDRYFLD 500
Score = 70.3 bits (172), Expect = 1e-12
Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 41/208 (19%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
R + +N+S T+ G + G +G GKS L + G L + G ++
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK----------- 64
Query: 405 SAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
++GYLSQ L P ++ + +I + +A+ + L +
Sbjct: 65 GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124
Query: 464 ---SDEIPYNIVQ-----------------------KIRLSRIIANNPAILLMDEPLYHL 497
+ + ++ L+R + P +LL+DEP HL
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184
Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHD 525
D E+ LK++ T++++SHD
Sbjct: 185 DLESIEWLEDYLKRY---PGTVIVVSHD 209
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 75.9 bits (187), Expect = 3e-14
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 10/199 (5%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ +N+ KK ++ +LS + +G + G +G GK+ L + G L GT
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449
I D + +GY Q +LF +++ E++ L ++ ++
Sbjct: 61 INGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL-LL 118
Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT 507
+L L + K +LS IA P++LL+DEP LD ++ +
Sbjct: 119 RVLGLT-DKANKRART---LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174
Query: 508 LLKQFKENKKTIVIISHDP 526
L+ + ++ ++I++ +H
Sbjct: 175 LILEVRKG-RSIILTTHSM 192
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 75.3 bits (185), Expect = 5e-14
Identities = 83/416 (19%), Positives = 155/416 (37%), Gaps = 47/416 (11%)
Query: 139 IFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKS---RQDE-INFGKAI 194
I + L +LG + L+G+ ++ + I + + +++K R+DE I I
Sbjct: 329 IILALYLLYG-LLG-PSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEI 386
Query: 195 LHNSEYI--YAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILG 252
L+ + I YA + K Q+ L+ K Y + S +L
Sbjct: 387 LNGIKVIKLYAWEKP-----FLKKIEDLRQKELKLLRKSAYLSALNSFLNFF---SPVLV 438
Query: 253 IGAWLVIHQKLSAGAIIATSIITA--------RAMAPLEQIINSKKSLNVGLKSLKYLIN 304
V+ L + A++ T+ + L +I+ V LK LK
Sbjct: 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLK---- 494
Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCII 363
+F E N I KN F D ++ ++++F I +G +
Sbjct: 495 --EFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAV 552
Query: 364 AGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT 423
GP G GKS+ L +LG + G++ + + Y+ Q + ++
Sbjct: 553 VGPVGSGKSSLLSAILGEMPKLSGSV-------------AVNGSVAYVPQQPWIQNGTVR 599
Query: 424 ENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RII 481
ENI+ + K K +D+ L G T I + QK R+S R +
Sbjct: 600 ENILFGSPYDE-ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV 658
Query: 482 ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537
+ I L+D+PL +D + + + KT+++++H + +D ++
Sbjct: 659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714
Score = 54.1 bits (130), Expect = 9e-08
Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 13/212 (6%)
Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
S I +++ R + L+ + +SFTI G I G +G GKS+ +L + L+ +
Sbjct: 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194
Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQ---KTAK 443
G I IS+ + +++ + Q LF ++ N+ D + + +
Sbjct: 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL----DPFDEYSDDEIWEALE 1250
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEA 501
+ + SL G + +++ Q+ + L+R + IL++DE +D E
Sbjct: 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310
Query: 502 KNNFY-TLLKQFKENKKTIVIISHD-PTIISM 531
T+ ++FK+ T++ I+H T++
Sbjct: 1311 DALIQKTIREEFKD--CTVLTIAHRLNTVMDS 1340
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 74.8 bits (184), Expect = 6e-14
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-----TLEKGTI 389
++ F +SF + +G I G SG GKS ++GLL + G I
Sbjct: 8 SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67
Query: 390 SFGDRQI----SRDFIEKFSAQIGYLSQHC--SLFPI-----SITENIILSHDQNSLHIA 438
F + + ++ + +I + Q SL P+ I E + L S A
Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127
Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPL 494
++ A ++L L P+ + Q++ ++ +A NP +L+ DEP
Sbjct: 128 KERAI------ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT 181
Query: 495 YHLDNEAKNNFYTLLKQFKENKKT-IVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDI 552
LD + LLK+ + K T +++I+HD +++ ++D + + + G ++I
Sbjct: 182 TALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241
Query: 553 FK 554
FK
Sbjct: 242 FK 243
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 74.5 bits (183), Expect = 8e-14
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
R +++S TI G ++ GPSGCGK+ L + G +T +G+I R+ IE
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR-----IEGP 72
Query: 405 SAQIGYLSQHCSLFP-ISITENIILS------HDQNSLHIAQKTAKIVGC----HEDILS 453
A+ G + Q+ +L P +++ +N+ IA + +VG H+ I
Sbjct: 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL-KQF 512
L G + Q++ ++R +A P +LL+DEP LD + LL +
Sbjct: 133 LSGGMR-------------QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW 179
Query: 513 KENKKTIVIISHD 525
+E K +++I+HD
Sbjct: 180 QETGKQVLLITHD 192
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 74.1 bits (182), Expect = 9e-14
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 23/210 (10%)
Query: 335 NIVFRDKKTSRLIC-QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393
+ F T + ++S IP+G I G SG GKS L + L G++
Sbjct: 8 SKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDG 67
Query: 394 RQI---SRDFIEKFSAQIGYLSQHCSLF-PISITENIILS---HDQNSLHIAQKTAKIVG 446
+ + S + + +IG + QH +L ++ EN+ I Q+ A+++
Sbjct: 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELL- 126
Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
+++ L + +D P + Q++ ++R +ANNP ILL DE LD E
Sbjct: 127 ---ELVGLSDK------ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 503 NNFYTLLKQF-KENKKTIVIISHDPTIISM 531
+ LLK +E TIV+I+H+ ++
Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKR 207
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 73.5 bits (180), Expect = 2e-13
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 3/194 (1%)
Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401
+ L+ Q++SFT+ G + GPSG GKS + + + G + + IS+
Sbjct: 24 RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83
Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461
+ +++ + Q LF S+ +NI S ++ A+ H I L +GY T
Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 462 Y--CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519
++ Q++ ++R + NP +L++DE LD E++ L + E +T+
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTV 202
Query: 520 VIISHDPTIISMSD 533
++I+H + + +D
Sbjct: 203 LVIAHRLSTVERAD 216
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 71.7 bits (176), Expect = 5e-13
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFS 405
+++S +I G + GPSG GKS L C+ GL+ G++ I + +
Sbjct: 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77
Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN-------G 457
QIG + Q +L +S+ EN +LS + + E +L
Sbjct: 78 RQIGMIFQQFNLIERLSVLEN-VLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD 136
Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
D++ Q++ ++R + P ++L DEP+ LD + LLK+ +
Sbjct: 137 KAYQRA-DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195
Query: 518 TIVIIS-HD--------PTIISMSDFSLIF 538
VI+S H I+ + D ++F
Sbjct: 196 ITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 70.8 bits (173), Expect = 1e-12
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE---KG 387
+ KN+ R + N++FTI +G + GPSGCGKS L M+G L + G
Sbjct: 3 LCLKNVSLR--LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60
Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVG 446
+ ++++ D + QIG L Q LFP +S+ +N++ + A++ A
Sbjct: 61 ELWLNEQRL--DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAA--- 115
Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNN 504
L ++G + D + Q+ R++ R + P LL+DEP LD ++
Sbjct: 116 --NAALE-RSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172
Query: 505 FYTLL-KQFKENKKTIVIISHD 525
F + + + V ++HD
Sbjct: 173 FRQWVFSEVRAAGIPTVQVTHD 194
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 70.3 bits (172), Expect = 1e-12
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ 407
+++SF EG + G +G GK+ L + LL + G ++ RD +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRK 76
Query: 408 IGYLSQHCSLFP-ISITENIILS---HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
IG L L+ ++ EN+ + + I + A++ L L
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS----KRLQLLEYLDRRV- 131
Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
E + QK+ ++R + ++P+IL++DEP LD + F+ +KQ K + ++ S
Sbjct: 132 -GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 524 HD-PTIISMSDFSLIFH 539
H + ++ D ++ H
Sbjct: 191 HIMQEVEALCDRVIVLH 207
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 69.8 bits (171), Expect = 2e-12
Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ +N+ R K L +S T+ G ++ GP+G GK+ + + L GTI
Sbjct: 1 LQLENLTKRYGKKRAL--DGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH--------DQNSLHIAQKTA 442
+ + + +K +IGYL Q ++P + T L + + +
Sbjct: 58 IDGQDVLKQ-PQKLRRRIGYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 443 KIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
++V + I SL G + +++ +++ + +P+IL++DEP LD
Sbjct: 116 ELVNLGDRAKKKIGSLSGG-------------MRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 499 NEAKNNFYTLLKQFKENKKTIVIIS 523
E + F LL + E++ IVI+S
Sbjct: 163 PEERIRFRNLLSELGEDR--IVILS 185
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 69.0 bits (169), Expect = 3e-12
Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 41/220 (18%)
Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380
+++ N T+T K+ + K + +N+S G I GPSG GKS L + G
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQ---LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
Query: 381 LLTLE--KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHI 437
T G + R + + F IGY+ Q L P +++ E ++ + L
Sbjct: 58 RRTGLGVSGEVLINGRPLDKR---SFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSG 114
Query: 438 AQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHL 497
++ + + +NP++L +DEP L
Sbjct: 115 GERKRVSIALE--------------------------------LVSNPSLLFLDEPTSGL 142
Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537
D+ + +LL++ + +TI+ H P+ F +
Sbjct: 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 69.1 bits (169), Expect = 3e-12
Identities = 92/427 (21%), Positives = 166/427 (38%), Gaps = 25/427 (5%)
Query: 115 SLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNE 174
++ + ++I +LP L++I + + + L + + LL T+ + +
Sbjct: 51 GIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVS----DW 106
Query: 175 RLERRYKKSRQDEINFGKAI--LHNSEYIYAPSTRDFLLTYWNK-----KRATSQEYQSL 227
R + R + D KAI L N E + ++ ++ ++A + + SL
Sbjct: 107 RTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166
Query: 228 IAKKYYFG--ISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQI 285
+ + S + MT+ A V +L+ G ++ + + + PL +
Sbjct: 167 LVLNFGQTAIFSTGLRVMMTM-------SALGVEEGQLTVGDLVNVNALLFQLSIPLNFL 219
Query: 286 INSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSR 345
S + + L ++ + +L D SD+ P + + N+ F R
Sbjct: 220 GFSYREIRQALTDMEKMFDLLD--VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP-RR 276
Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
I +SFTIP G I G SG GKS L + + G+I+ + I +
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 406 AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
IG + Q LF +I NI + A+ H+ I SL GY T
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396
Query: 466 --EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
++ Q++ ++R I NP IL++DE LD + L++ + T+VI
Sbjct: 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
Query: 524 HDPTIIS 530
TII
Sbjct: 457 RLSTIID 463
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 68.6 bits (168), Expect = 4e-12
Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 16/191 (8%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-DFIEKFSAQ 407
++S + G + GP+G GK+ + G GT+ F R I+
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 408 IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE-----------DILSLK 455
I Q LFP +++ EN+ + E + + L
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140
Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
+ + Y +++ ++R +A P +LL+DEP L+ E L+++ ++
Sbjct: 141 ELADRP--AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198
Query: 516 -KKTIVIISHD 525
TI++I HD
Sbjct: 199 GGVTILLIEHD 209
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 68.8 bits (168), Expect = 4e-12
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR---DFIEK 403
I + + + G I GPSG GKS L + GL G + + + + D
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 404 FSAQ-IGYLSQHCSLFP-ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL--- 452
A+ +G++ Q L P ++ EN+ L +S A+ + VG + +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144
Query: 453 -SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
L G Q Q++ L+R A P +L DEP +LD + LL
Sbjct: 145 AQLSGGEQ-------------QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL-- 189
Query: 512 FKENKK---TIVIISHDPTI 528
F N++ T+V+++HDP +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 68.4 bits (167), Expect = 5e-12
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI----SRDFIEK 403
+ +FT+P + GPSG GK++ + + GL ++G I R + F+
Sbjct: 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP 73
Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
+IGY+ Q LFP ++ N+ ++ + ++G I L + Y T
Sbjct: 74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPGTL 129
Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVI 521
E Q++ + R + P +LLMDEPL LD K L++ E I+
Sbjct: 130 SGGE-----KQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 522 ISHDP 526
+SH
Sbjct: 185 VSHSL 189
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 67.9 bits (166), Expect = 6e-12
Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 13/205 (6%)
Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
+T+ A+N+ KK R + ++S + G + GP+G GK+ ++GL+ +
Sbjct: 1 DMSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 387 GTISFGDRQISRDFIEKFS-AQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKI 444
G I D I++ + K + IGYL Q S+F +++ +NI+ L I +K K
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV-----LEIREKDLKK 113
Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNE 500
E++ +L + T+ D Y++ +++ ++R +A NP +L+DEP +D
Sbjct: 114 AERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173
Query: 501 AKNNFYTLLKQFKENKKTIVIISHD 525
A + ++K K+ ++I H+
Sbjct: 174 AVIDIQRIIKHLKDRGIGVLITDHN 198
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 67.9 bits (166), Expect = 6e-12
Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
++ N+ F + + + +NLS + +G + G SG GKS L + G L ++G I+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
+S D + S+ I L+Q LF ++ N+
Sbjct: 61 LDGVPVS-DLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
G + Q++ L+RI+ + I+L+DEP LD + +L+
Sbjct: 96 GRRFSGGER-------------QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142
Query: 511 QFKENKKTIVIISH 524
+ ++ KT++ I+H
Sbjct: 143 EVLKD-KTLIWITH 155
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 67.2 bits (164), Expect = 1e-11
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 9/198 (4%)
Query: 331 ITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388
ITA + FRD K + +SFT+ G + GP+G GK+ L + GLL + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447
+ + ++ E ++G++S L+ ++ EN+ L + TA++
Sbjct: 62 ATVDGFDVVKEPAEA-RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL--- 117
Query: 448 HEDILS-LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
E++ L + QK+ ++R + ++P +LL+DEP LD A
Sbjct: 118 -EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 507 TLLKQFKENKKTIVIISH 524
++Q + K I+ +H
Sbjct: 177 EFIRQLRALGKCILFSTH 194
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 66.8 bits (163), Expect = 1e-11
Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 34/220 (15%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I A+N+ + R + +S + G I GP+G GKS L + G L+ + G ++
Sbjct: 2 IRAENLSYS--LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL---SHDQNSL-----HIAQKT 441
++ E+ + L Q+ SL FP ++ E + + H IA +
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119
Query: 442 AKIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN------NPAILLMD 491
D +L G Q Q+++L+R++A + L +D
Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQ-------------QRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISM 531
EP LD +++ L +Q ++ + HD + +
Sbjct: 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ 206
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 66.6 bits (163), Expect = 2e-11
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 7/203 (3%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I KN+ R + + +N+SF+I G I G +G GKS+ LL + L+ L G+I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
IS+ + ++I + Q LF +I N+ + S + + VG E
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLD-PFGEYSDEELWQALERVGLKEF 121
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
+ SL G T ++ Q+ + L+R + IL++DE +D E
Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181
Query: 509 LKQ-FKENKKTIVIISHD-PTII 529
+++ FK+ T++ I+H TII
Sbjct: 182 IREAFKD--CTVLTIAHRLDTII 202
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 65.3 bits (159), Expect = 4e-11
Identities = 54/292 (18%), Positives = 105/292 (35%), Gaps = 33/292 (11%)
Query: 251 LGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKK---SLNVGLKSLKYLINLND 307
+ I A +++ G ++ + + L I++ L L +
Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367
Query: 308 FTTLLNSSDSKKEPISMRLS--NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAG 365
+ ++ ++ IT +N+ R L+ L+F + G +I G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLL-SELNFEVRPGERLLITG 426
Query: 366 PSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITEN 425
SG GK++ L + GL G IS + + +L Q L ++ E
Sbjct: 427 ESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475
Query: 426 IILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV------QKIRLSR 479
+ + A+ A + G +E ++ V Q++ +R
Sbjct: 476 LCYPNAAPDFSDAELVAVLHKVGL-------GDLAERLDEEDRWDRVLSGGEQQRLAFAR 528
Query: 480 IIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIIS 530
++ + P + +DE LD E ++ Y LLK+ E VI + H PT+ +
Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKE--ELPDATVISVGHRPTLWN 578
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 64.8 bits (158), Expect = 6e-11
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 11/198 (5%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+ A+N+ R K R + +S ++ +G + GP+G GK+ ++GL+ + G I
Sbjct: 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 391 FGDRQISRDFI-EKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCH 448
+ I++ + ++ IGYL Q S+F +++ ENI+ + L ++ K+
Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 449 ED--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
E+ I L+ ++ E +++ ++R +A NP LL+DEP +D A +
Sbjct: 119 EEFHITHLRKSKASSLSGGE-----RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 507 TLLKQFKENKKTIVIISH 524
++K K+ ++I H
Sbjct: 174 KIIKILKDRGIGVLITDH 191
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 64.7 bits (158), Expect = 6e-11
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 69/200 (34%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ +L+ +++S TI G + G +G GKS L + G L ++G ++
Sbjct: 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
+G +IGY Q
Sbjct: 59 WGST-----------VKIGYFEQ------------------------------------- 70
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
L G + ++ L++++ NP +LL+DEP HLD E+ LK
Sbjct: 71 ---LSGGEKM-------------RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114
Query: 511 QFKENKKTIVIISHDPTIIS 530
++ T++++SHD +
Sbjct: 115 EY---PGTVILVSHDRYFLD 131
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 63.7 bits (155), Expect = 1e-10
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 20/201 (9%)
Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFL---LCMLGLLTLEKGTISFGDR 394
++ I ++S + G I G SG GK+ L + G I F +
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 395 QISRDFIEKFSAQIGYLSQHCSLFP-ISITE-----NIILSHDQNSLHIAQKTAKIVGCH 448
D +F + Y+ Q L P +++ E I+ ++S I +K + V
Sbjct: 73 PRKPD---QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129
Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFY 506
+ L+ G S ++ R+S + +P +L++DEP LD+ N
Sbjct: 130 DLALTRIGGNLVKGIS------GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
Query: 507 TLLKQFKENKKTIVIISHDPT 527
+ L Q + +++ H P
Sbjct: 184 STLSQLARRNRIVILTIHQPR 204
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 63.4 bits (154), Expect = 2e-10
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 40/205 (19%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---------- 396
+ + +S G I G SG GKS FL C+ L G+I +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 397 ---SRDFIEKFSAQIGYLSQHCSLFP-ISITENII--------LSHDQNSLHIAQKTAKI 444
+ +++ ++G + QH +L+ +++ EN+I +S + ++ A+K
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAE-AIERAEKYLAK 139
Query: 445 VGCHEDILS----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500
VG E + L G Q Q++ ++R +A P ++L DEP LD E
Sbjct: 140 VGIAEKADAYPAHLSGGQQ-------------QRVAIARALAMEPEVMLFDEPTSALDPE 186
Query: 501 AKNNFYTLLKQFKENKKTIVIISHD 525
+++ E +T+V+++H+
Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHE 211
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 63.2 bits (153), Expect = 2e-10
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ-- 407
N++ IP G +I G GCGKS+ LL +LG + +G + + ++ S E ++
Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78
Query: 408 --IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC--HEDILSLKNGYQTTYC 463
+ Y +Q L ++ ENI N + A C DI L G QT
Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNK---QRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 464 SDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYT--LLKQFKENKKTI 519
I + Q+ R+ R + N I+ +D+P LD ++ +LK +++K+T+
Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL 195
Query: 520 VIISHDPTIISMSDF 534
V+++H + +D+
Sbjct: 196 VLVTHKLQYLPHADW 210
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 62.6 bits (152), Expect = 3e-10
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
R + +LSFT+ G I GP+G GK+ L + GLL + G + + I E +
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRESY 73
Query: 405 SAQIGYLSQHCSLFP-ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL--SLK 455
+ YL + ++ EN+ S + ++ A + G ED+ L
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLS 132
Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
G Q +++ L+R+ + + ++DEP LD E L+
Sbjct: 133 AGQQ-------------RRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 516 KKTIVIISHDP 526
+++ +H P
Sbjct: 180 GGIVLLTTHQP 190
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 62.4 bits (152), Expect = 4e-10
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-DFIEKFS 405
I +S T+PEG + G +G GK+ L ++GLL G+I F R I+ E+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 406 AQIGYLSQHCSLFP-ISITENIIL-SHDQNSLHIAQKTAKIVG--------CHEDILSLK 455
A IGY+ + +FP +++ EN++L ++ + + ++ + +L
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLS 134
Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
G Q Q + ++R + + P +LL+DEP L + + +++ ++
Sbjct: 135 GGEQ-------------QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 516 KKTIVIISHD 525
TI+++ +
Sbjct: 182 GVTILLVEQN 191
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 61.3 bits (149), Expect = 6e-10
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 47/198 (23%)
Query: 343 TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE 402
R++ ++LSF I G +I GPSG GKS+ + GL G I +
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------- 63
Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
+ +L Q L ++ E +I D D+LS G Q
Sbjct: 64 ---EDLLFLPQRPYLPLGTLREQLIYPWD------------------DVLSG--GEQ--- 97
Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522
Q++ +R++ + P + +DE LD E+++ Y LLK+ T++ +
Sbjct: 98 ----------QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISV 144
Query: 523 SHDPTIISMSDFSLIFHP 540
H P++ D L
Sbjct: 145 GHRPSLWKFHDRVLDLDG 162
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 61.3 bits (149), Expect = 6e-10
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK-FS 405
+ +S + G + G +G GK+ L ++GL+ G I F I+ +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL-------KNG 457
I Y+ + +FP +++ EN++L + + E++ L +N
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLL-----GAYARRDKEAQERDLEEVYELFPRLKERRNQ 132
Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493
T E Q + ++R + + P +LL+DEP
Sbjct: 133 RAGTLSGGE-----QQMLAIARALMSRPKLLLLDEP 163
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 61.0 bits (148), Expect = 8e-10
Identities = 36/193 (18%), Positives = 82/193 (42%), Gaps = 40/193 (20%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
++SF++ +G + GP+G GK+ + +LG++ + G + F + + +
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI---- 72
Query: 409 GYLSQHCSLFP-ISITENII-------LSHDQ---------NSLHIAQKTAKIVGCHEDI 451
GYL + L+P + + + ++ L ++ L +++ K V +
Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV----EE 128
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
LS N QK++ + ++P +L++DEP LD ++++
Sbjct: 129 LSKGNQ---------------QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 512 FKENKKTIVIISH 524
KT+++ +H
Sbjct: 174 LARAGKTVILSTH 186
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 60.0 bits (145), Expect = 1e-09
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 17/187 (9%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI------SRDFIEK 403
+++ PEG ++ GPSG GKS+ L + L GT++ S I
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79
Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
+G + Q +L+P +++ EN+I + L +++ A L +
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQAL-----ARAEKLLKRLRLKP 133
Query: 463 CSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
+D P ++ Q++ ++R + P +LL DEP LD E +++K+ E T
Sbjct: 134 YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
Query: 519 IVIISHD 525
VI++H+
Sbjct: 194 QVIVTHE 200
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 60.0 bits (145), Expect = 2e-09
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 16/227 (7%)
Query: 310 TLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGC 369
L S EP+ + N T+++K K ++ I + +S T G I GPSG
Sbjct: 12 VLSFSELPYLEPVKLSFRNLTLSSKEK----SKKTKTILKGVSGTAKPGELLAIMGPSGS 67
Query: 370 GKSNFLLCMLGLLTLE---KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITEN 425
GK+ L + G L G I R K S GY+ Q L P +++ E
Sbjct: 68 GKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKIS---GYVQQDDVLLPTLTVRET 124
Query: 426 IILS-----HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480
+ S S ++ + V + + + +++ ++
Sbjct: 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184
Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT 527
+ +P+IL +DEP LD+ + LLK+ + +T++ H P+
Sbjct: 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 59.9 bits (145), Expect = 2e-09
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 25/199 (12%)
Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
T+P G I GPSG GKS L + G T G I + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA--SPPAERPVSM 75
Query: 411 LSQHCSLFP-ISITENIIL---------SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
L Q +LF +++ +NI L + + + A + G + + +G Q
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135
Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519
Q++ L+R + ILL+DEP LD + L+ Q + +K T+
Sbjct: 136 ------------QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183
Query: 520 VIISHDPTIISMSDFSLIF 538
++++H P + ++F
Sbjct: 184 LMVTHHPEDAARIADRVVF 202
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 59.8 bits (145), Expect = 2e-09
Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
+ + ++S + +G GP+G GK+ + +LGL+ + G I+F + ++ +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IE 69
Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSL--HIAQKTAKIVGCHEDILSLKNGYQT 460
+IG L + +P ++ EN+ L + + +VG + G+
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129
Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520
+ Q++ ++ + NP +L++DEP LD + L+ ++ T++
Sbjct: 130 ---------GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 521 IISH 524
I SH
Sbjct: 181 ISSH 184
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 59.9 bits (145), Expect = 2e-09
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 38/247 (15%)
Query: 299 LKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEG 358
L + + K+ PI + I KN+ R + I +LS+ + G
Sbjct: 2 LAHSESSRGVELPEPKEPKKRHPIEINEP--LIELKNVSVRRNG--KKILGDLSWQVNPG 57
Query: 359 SCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI-SFGDRQISRDFIEKFSAQIGYLS--QHC 415
I GP+G GK+ L + G G + G R + I + +IG +S H
Sbjct: 58 EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117
Query: 416 SLFPISITENIILS------------HDQNSLHIAQKTAKIVGCHE----DILSLKNGYQ 459
+++LS L AQ +++G SL G Q
Sbjct: 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQ 177
Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF--KENKK 517
+++ ++R + +P +L++DEP LD A+ L++
Sbjct: 178 -------------RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAP 224
Query: 518 TIVIISH 524
++ ++H
Sbjct: 225 ALLFVTH 231
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 59.9 bits (145), Expect = 2e-09
Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 20/232 (8%)
Query: 314 SSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSN 373
++N I + + L+ +NLS +P G +I GPSGCGK++
Sbjct: 417 GLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTS 476
Query: 374 FLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ-----IGYLSQHCSLFPISITENII- 427
L + GL G ++ +D F Q +G L ++P+ +
Sbjct: 477 LLRVLGGLWPSTGGKLTKPTDGGPKDLF--FLPQRPYMTLGTLRDQV-IYPLKAEDMDSK 533
Query: 428 LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC---SDEIPYNIVQKIRLSRIIANN 484
+ D++ L I + +L + G D + Q++ +R+ +
Sbjct: 534 SASDEDILRILENV-----QLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588
Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536
P ++DE + + + Y ++ T + + H ++ D+ L
Sbjct: 589 PKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKFHDYVL 637
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 59.5 bits (144), Expect = 2e-09
Identities = 54/212 (25%), Positives = 82/212 (38%), Gaps = 40/212 (18%)
Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
+ + N KK +SF+I EG + G SGCGKS +LGL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443
G I F + I++ E+ ++ L + L E + +
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGL-----PEEFLYRYP------------ 107
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
HE LS G Q Q+I ++R +A NP +++ DEP+ LD +
Sbjct: 108 ----HE--LS---GGQR------------QRIGIARALALNPKLIVADEPVSALDVSVQA 146
Query: 504 NFYTLLKQFKENKK-TIVIISHD-PTIISMSD 533
LLK +E T + ISHD + +SD
Sbjct: 147 QILNLLKDLQEELGLTYLFISHDLSVVRYISD 178
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 58.0 bits (140), Expect = 7e-09
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 27/212 (12%)
Query: 340 DKKTSRLICQNLSF--TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397
DK Q + F T +G I GPSG GKS L + G T + G + ++
Sbjct: 4 DKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63
Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENIIL---------SHDQNSLHIAQKTAKIVGC 447
+ L Q +LF +++ +N+ L + D+ ++ +A VG
Sbjct: 64 --AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA---LARVGL 118
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
L E+ Q++ L+R++ + +LL+DEP LD +
Sbjct: 119 AGLEKRL---------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169
Query: 508 LLKQF-KENKKTIVIISHDPTIISMSDFSLIF 538
L+ E K T+++++H P ++F
Sbjct: 170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 58.0 bits (140), Expect = 7e-09
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397
F DKK N+SF +P G + GP+G GK+ +LGLL +G I++ +S
Sbjct: 12 FGDKKAVD----NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS 67
Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENII---------LSHDQNSLHIAQKTAKIVGC 447
+ + +IGYL + L+P +++ + + + Q L + +IVG
Sbjct: 68 Q----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK 123
Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506
+ I L G Q QKI+ + + P +L++DEP LD
Sbjct: 124 KTKKIKELSKGNQ-------------QKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDI 552
+ + KE TI+ SH + + D L+ Q L+G +DI
Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 56.5 bits (136), Expect = 2e-08
Identities = 81/420 (19%), Positives = 144/420 (34%), Gaps = 47/420 (11%)
Query: 135 LFTPIFIILSFCIHPILGSWAILSG-ILLLT---ITILFQANNERLERRYK---KSRQDE 187
P + A LS + LLT I + + R YK +R+ E
Sbjct: 123 SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETE 182
Query: 188 ---INFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244
N + IL + + R + + N +QEY+ I + F + +
Sbjct: 183 DKLQNDYQTILEGRKELTLNRERAEYV-HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNI 241
Query: 245 TLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMA-PLEQIINSKKSLNVGLKSLKYL- 302
L I G+ WL + ++ + AT ++ + PL + +L + +
Sbjct: 242 MLLGLI-GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIA 300
Query: 303 -INLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCC 361
+ L + + + ++ L N ++ F ++ TI G
Sbjct: 301 KLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH--------VGPINLTIKRGELV 352
Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPIS 421
+ G +G GKS + + GL + G I + +S + +E + + LF
Sbjct: 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL 412
Query: 422 ITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRII 481
+ S + + SL +G + + + QK RL+ ++
Sbjct: 413 LGPEGKASPQLIEKWLQRLELA------HKTSLNDGRFSN-----LKLSTGQKKRLALLL 461
Query: 482 ANNPAILLMDEPLYHLDNEAKNN-------FY-TLLKQFKENKKTIVIISHDPTIISMSD 533
A LL + + LD A + FY LL KE KTI ISHD +D
Sbjct: 462 A-----LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHAD 516
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 56.3 bits (136), Expect = 2e-08
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 30/221 (13%)
Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376
SK P S++ + + + +++SF +P G + G +G GKS L
Sbjct: 7 SKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLR 66
Query: 377 CMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLH 436
+ G+ + GT++ ++S G+ + ++ ENI L+ L
Sbjct: 67 LLAGIYPPDSGTVT-VRGRVS----SLLGLGGGFNPE------LTGRENIYLNGRLLGLS 115
Query: 437 IAQKTAKIVGCHEDILS---LKNGYQT---TYCSDEIPYNIVQKIRL--SRIIANNPAIL 488
+ KI ++I+ L + TY S K RL + A P IL
Sbjct: 116 RKEIDEKI----DEIIEFSELGDFIDLPVKTYSSG-------MKARLAFAIATALEPDIL 164
Query: 489 LMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
L+DE L D + L++ + KT++++SHDP+ I
Sbjct: 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 56.2 bits (135), Expect = 3e-08
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
+ +N++ I +G I G +G GK++ L+ +LG L +G I K S
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-------------KHSG 98
Query: 407 QIGYLSQHCSLFPISITENII--LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
+I + SQ + P +I ENII +S+D+ K ++ EDI T
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---EEDITKFPEKDNTVLGE 155
Query: 465 DEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLD-NEAKNNFYTLLKQFKENKKTIVI 521
I + Q+ R L+R + + + L+D P +LD K F + + + NK I++
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 522 ISHDPTIISMSDFSLIFHPIQGSLF 546
S + +D LI H +GS +
Sbjct: 216 TSKMEH-LKKADKILILH--EGSSY 237
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 56.0 bits (135), Expect = 3e-08
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
+ K++ R + + + +SFTI +G GP+G GK+ L + GLL G +
Sbjct: 22 SLKSLFKRKYREVEAL-KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
Query: 392 GDRQISRDFIEKFSAQIGY-LSQHCSL-FPISITENIILSHDQNSLHIAQKTAKIVGCHE 449
+ KF +IG Q L + + + ++ L L A+ ++
Sbjct: 81 AGLVPWKRRK-KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDEL-S 138
Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRL-----SRIIAN---NPAILLMDEPLYHLDNEA 501
++L L +E+ V+++ L + I A P IL +DEP LD A
Sbjct: 139 ELLDL----------EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188
Query: 502 KNNFYTLLKQF-KENKKTIVIISHD 525
+ N LK++ +E T+++ SH
Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHY 213
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 56.0 bits (135), Expect = 3e-08
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-----------R 398
+S T+ G + G SG GKS L +L L+ +G I F + I R
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRR 363
Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNS----LHIAQKTAKIVGCHEDILSL 454
F G LS ++ I I E + + + S + + VG
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQI-IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-- 420
Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-K 513
N Y + + Q+I ++R + P ++L+DEP LD + LL+ +
Sbjct: 421 -NRYPHEFSGGQ-----RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474
Query: 514 ENKKTIVIISHDPTII-SMSDFSLIFHPIQGSLF--GLTQDIF 553
++ + + ISHD ++ ++ ++ G + G T+ +F
Sbjct: 475 KHGLSYLFISHDLAVVRALCHRVIVMR--DGKIVEQGPTEAVF 515
Score = 50.6 bits (121), Expect = 1e-06
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 30/217 (13%)
Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTI 389
++ F + + + +SF I G + G SG GKS L +LGLL G+I
Sbjct: 13 SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 390 SFGDRQI----SRDFIEKFSAQIGYLSQH--CSLFPI-----SITENIILSHDQNSLHIA 438
F + R +IG + Q SL P+ + E + L + A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSR---A 129
Query: 439 QKTAKIVGCHEDI-LSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEP 493
A+ + E + + Y P+ + Q++ ++ +AN P +L+ DEP
Sbjct: 130 AARARALELLELVGIPEPEKRLDAY-----PHELSGGQRQRVMIAMALANEPDLLIADEP 184
Query: 494 LYHLDNEAKNNFYTLLKQFKENKK-TIVIISHDPTII 529
LD + LLK+ + I+ I+HD I+
Sbjct: 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV 221
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 55.6 bits (134), Expect = 3e-08
Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF-GDRQISR-DFIEKFSA 406
+LSF++ G ++ GP+G GK+ + + G ++G + F GD +++ A
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
IG Q ++F +++ EN+ L+ +++ A A++ + T D
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR--RIDELLATIGLGD 139
Query: 466 E-------IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
E + + Q + + ++A +P +LL+DEP+ + + LLK K +
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHS 198
Query: 519 IVIISHD 525
I+++ HD
Sbjct: 199 ILVVEHD 205
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 55.4 bits (133), Expect = 4e-08
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
LS + G + GP+G GKS L M G+ + G+I F + + + + Y
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAY 76
Query: 411 LSQHCS-LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469
LSQ + F + + + L + +++ L+L D++
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQP------DKTRTELLNDVAGALAL---------DDKLGR 121
Query: 470 NIV-------QKIRLSRIIAN-----NPA--ILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
+ Q++RL+ ++ NPA +LL+DEP+ LD ++ LL +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181
Query: 516 KKTIVIISHD 525
IV+ SHD
Sbjct: 182 GLAIVMSSHD 191
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 55.0 bits (133), Expect = 6e-08
Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 54/177 (30%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407
+S ++ G + G +G GKS + + GL + G I +++S + A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76
Query: 408 IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467
I + Q L + ++
Sbjct: 77 IAMVYQ---------------------LSVGER--------------------------- 88
Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
Q + ++R +A N +L++DEP L + ++++ + ++ ISH
Sbjct: 89 -----QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 55.0 bits (132), Expect = 6e-08
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 29/205 (14%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ F + +I + L+F I S + GP+G GKS L + G L G +S
Sbjct: 390 IMVQNVSFG-YSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
++ +QH L D++SL E+
Sbjct: 449 RHSH-----------NKLPRYNQH---------LAEQLDLDKSSLEFMMPKFPDEKELEE 488
Query: 451 ILSLKNGYQTTYCSDEIPYNIV---QKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNF 505
+ S+ + T + +P + + Q+ R+ R+ P +LL+DEP HLD E +
Sbjct: 489 MRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL 548
Query: 506 YTLLKQFKENKKTIVIISHDPTIIS 530
+ +F +V++SHD +IS
Sbjct: 549 AEAINEF---PGGVVLVSHDFRLIS 570
Score = 46.5 bits (110), Expect = 2e-05
Identities = 54/268 (20%), Positives = 98/268 (36%), Gaps = 60/268 (22%)
Query: 287 NSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPIS--MRLSNNTITAKNIVFRDKKTS 344
+L L+SL+ + T L S PIS +++ + +++
Sbjct: 42 TEVDALADELESLELIAKARSVTGNLFSH-----PISRDVKIESLSLSFH---------G 87
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG--DRQISR---- 398
+ ++++ + G + GP+G GKS FL + G I F R+I
Sbjct: 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQ 147
Query: 399 ------DFIEKFSAQIGY----LSQHCSLFPISITENIILSHDQ-NSLHIAQKTAKIVGC 447
+ ++ Y L+Q C + + D+ ++ K AKI+
Sbjct: 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKIL-- 205
Query: 448 HE----------DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHL 497
H + L G++ + L+R + P +LL+DEP HL
Sbjct: 206 HGLGFLSEMQDKKVKDLSGGWR-------------MRAALARALFQKPDLLLLDEPTNHL 252
Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHD 525
D EA L ++ + +VI+SH
Sbjct: 253 DLEAIVWLEEYLAKYD--RIILVIVSHS 278
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 53.9 bits (129), Expect = 1e-07
Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 11/210 (5%)
Query: 320 EPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379
E + R S ++ N + + + LSF +P G C + G +G GK+ +
Sbjct: 553 ETLLFRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT 612
Query: 380 GLLTLEKGTISFGDRQISRDFI-EKFSAQIGYLSQHCSLFPI----SITENIILSHDQNS 434
G G I+ ++ Q+GY Q +L+ E
Sbjct: 613 GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR 672
Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494
I K++ + G +++ + + +P+++L+DEP
Sbjct: 673 SDIGSAIEKLLRL------VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPS 726
Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISH 524
LD +A+ + + ++ + ++N K I++ SH
Sbjct: 727 TGLDPKARRHLWDIIARLRKNGKAIILTSH 756
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 53.3 bits (128), Expect = 2e-07
Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 11/202 (5%)
Query: 333 AKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG 392
A F+ + LS I EG + G +G GKS L + G L G I
Sbjct: 7 ATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILID 66
Query: 393 DRQISRDFIEKFSAQIGYLSQH--CSLFP-ISITENIILSH---DQNSLHIAQKTAKIVG 446
+++ + K + + + Q P ++I EN+ L+ + L A +
Sbjct: 67 GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSS 126
Query: 447 CHEDILSLKNGYQTTYCSDEIPY---NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
E + L G + SD I Q + L + P ILL+DE LD +
Sbjct: 127 FRERLARLGLGLE-NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAE 185
Query: 504 NFYTLLKQFKENKK-TIVIISH 524
L + E K T ++++H
Sbjct: 186 FVMELTAKIVEEHKLTTLMVTH 207
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 52.9 bits (127), Expect = 2e-07
Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
IT +N+ ++++ ++S IP+G I GP+G GKS L M LL + G I+
Sbjct: 2 ITIENV--SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTA---KIVGC 447
+++ ++ + ++ L Q +T ++ + + T +I+
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENH-INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
+ L L++ Y DE+ Q+ ++ ++A + +L+DEPL +LD +
Sbjct: 119 AIEYLHLED-LSDRYL-DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 508 LLKQF-KENKKTIVIISHD 525
+L++ E KTIV++ HD
Sbjct: 177 ILRRLADELGKTIVVVLHD 195
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 52.6 bits (126), Expect = 3e-07
Identities = 40/199 (20%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+V + + + +SF + G + GP+G GK+ + + LL G +
Sbjct: 1 IEVENLVKKYGDFEAV--RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449
+ R+ E +IG + Q S+ ++ EN+ + + A++ +I +
Sbjct: 59 VAGHDVVREPRE-VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD 117
Query: 450 --DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507
+L + TY + +++ ++R + + P +L +DEP LD + + + +
Sbjct: 118 FVGLLEAADRLVKTYSG-----GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
Query: 508 LLKQFK-ENKKTIVIISHD 525
+++ K E TI++ +H
Sbjct: 173 YIEKLKEEFGMTILLTTHY 191
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 52.2 bits (125), Expect = 4e-07
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 23/194 (11%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI--SFGDRQIS------R 398
+ +N+S ++ G C ++ GPSG GKS L + ++G I + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENII---LSHDQNSLHIAQKTAKI----VGCHEDI 451
+ +E IGY+SQ + P +++ L +A+ A + E +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
SL T+ E Q++ ++R + ILL+DEP LD + L+++
Sbjct: 146 WSLA---PATFSGGE-----QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 512 FKENKKTIVIISHD 525
K +V I HD
Sbjct: 198 AKARGAALVGIFHD 211
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 51.1 bits (122), Expect = 8e-07
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDFIE 402
R + LSFT+ G + GP+G GK+ L + GL G + + RD I
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIA 72
Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLH-IAQKTAKI-VGCHEDIL--SLKNGY 458
+ +G+ + +S+ EN+ H +S + + A++ + ED L G
Sbjct: 73 RGLLYLGHAPGIKTT--LSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQ 130
Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518
Q +++ L+R++ + + ++DEP LD F +
Sbjct: 131 Q-------------RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177
Query: 519 IVIISHDP 526
+V+ +H
Sbjct: 178 VVLTTHQD 185
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 49.4 bits (118), Expect = 2e-06
Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 37/256 (14%)
Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366
F S S K+ + A+ +D +SF I +G I G
Sbjct: 12 KFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKD----------ISFEIYKGERVGIIGH 61
Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426
+G GKS L + G+ G + ++ G+ + ++ ENI
Sbjct: 62 NGAGKSTLLKLIAGIYKPTSGKVK-----VTGKVAPLIELGAGFDPE------LTGRENI 110
Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDIL------SLKNGYQTTYCSDEIPYNIVQKIRLSRI 480
L L + +I ++I+ + TY S + ++ S
Sbjct: 111 YL----RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS-----GMYARLAFSVA 161
Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII-SMSDFSLIFH 539
P ILL+DE L D + L + E KTIV++SHD I D ++
Sbjct: 162 THVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLE 221
Query: 540 PIQGSLFGLTQDIFKF 555
Q + G +++
Sbjct: 222 HGQIRMEGSPEEVIPA 237
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 48.3 bits (115), Expect = 5e-06
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 18/194 (9%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
I +N+ R + +N+SF + G I G +G GKS +L + L E+G I
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450
IS +E + + + Q +LF +I N+ D + ++ + E
Sbjct: 67 IDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL----DPFDEYSDEEIYGALRVSEG 122
Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
L+L G + C L+R + P +L++DE +D ++
Sbjct: 123 GLNLSQGQRQLLC-------------LARALLKRPRVLVLDEATASIDYATDALIQKTIR 169
Query: 511 QFKENKKTIVIISH 524
+ + TI+ I+H
Sbjct: 170 E-EFTNSTILTIAH 182
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 48.0 bits (114), Expect = 6e-06
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-QISRDFIE 402
C+++SF + G I G SG GK+ L C+ G LT + GT+++ R RD
Sbjct: 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 403 KFSAQ--------IGYLSQHCSLFPI-----------SITENIILSHDQNSLHIAQKTAK 443
A+ G++ Q+ P +I E ++ ++ +I +
Sbjct: 78 MSEAERRRLLRTEWGFVHQN----PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQD 133
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
+ E L + T+ + Q+++++R + P ++ MDEP LD +
Sbjct: 134 WLEEVEIDLDRIDDLPRTFSG-----GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 504 NFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF--GLTQDIF 553
LL+ +E +VI++HD + + L+ QG + GLT +
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK-QGQVVESGLTDRVL 240
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 47.6 bits (113), Expect = 1e-05
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 38/227 (16%)
Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376
SK P++++ + N F K+ S Q++SF IP+G G +G GKS L
Sbjct: 10 SKNYPVAIK-EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 377 CMLGLLTLEKGTISFG-----DRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431
+ GLL G + R+ +++ +G Q P
Sbjct: 69 MLTGLLLPTSGKVRVNGKDPFRRR--EEYLRSIGLVMGQKLQLWWDLPA----------- 115
Query: 432 QNSLHIAQKTAKIVGCH--------EDILSLKNG--YQTTYCSDEIPYNIVQKIRLSRII 481
+SL + + +I +IL L+ + S Q++R
Sbjct: 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG------QRMRAELAA 169
Query: 482 A--NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TIVIISHD 525
A + P +L +DEP LD A+ N LK++ E ++ T+++ +H
Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 47.0 bits (111), Expect = 1e-05
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 36/196 (18%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
+ L F I S I GP+G GKS L ++G L G + R +I
Sbjct: 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR-----------LRI 652
Query: 409 GYLSQHCSLFPISITENIILSHDQNSLHIA-QKTAKIVG-----CHEDILSLKN--GYQT 460
G+ QH + E + + Q ++ Q+ K +G H + +K+ G Q
Sbjct: 653 GWFDQHAN--EALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQK 710
Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520
++ L+ + P +L++DEP +LD E+ + L + E ++
Sbjct: 711 A------------RVALAELALGGPDVLILDEPTNNLDIESID---ALAEAINEYNGGVI 755
Query: 521 IISHDPTIISMSDFSL 536
++SHD +I +D +L
Sbjct: 756 MVSHDERLIVETDCNL 771
Score = 38.5 bits (89), Expect = 0.005
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAK---NNFYTLLKQFKENKKTIVIISHD 525
++ L+R + P +L++DEP HLD A +N+ + KKT++I+SHD
Sbjct: 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNY------LQGWKKTLLIVSHD 468
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 47.2 bits (112), Expect = 1e-05
Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 38/248 (15%)
Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385
LS + + F + + L S G +G GKS L + G LT
Sbjct: 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT 417
Query: 386 KGTISFGDR-------QISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA 438
+G + R Q DF++K + ++ FP E I S ++
Sbjct: 418 RGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFME---KSFPGKTEEEI--RRHLGSFGLS 472
Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYH 496
+ A I SL G QK R+ + NNP +L++DEP H
Sbjct: 473 GELA----LQS-IASLSGG---------------QKSRVAFAACTWNNPHLLVLDEPTNH 512
Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFKFN 556
LD ++ LK F +V++SHD IS ++ G + + I K+
Sbjct: 513 LDRDSLGALAKALKNFNGG---VVLVSHDEEFISSL-CKELWVVEDGKVTPIEGGIDKYK 568
Query: 557 TVTHNQIK 564
+ +++
Sbjct: 569 KLLGAELR 576
Score = 45.3 bits (107), Expect = 4e-05
Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 49/197 (24%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403
+++ + T+ G + G +G GKS L R I+ +
Sbjct: 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLL------------------RAIANGQVSG 133
Query: 404 FSAQIGYLSQHCSLFPISITENIILSHDQNSLH--------IAQKTAKIVGCHEDILSLK 455
F + Q Q+ L +A++ + G + + K
Sbjct: 134 FHVE-----QEV--------RGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDK 180
Query: 456 NGYQTTYCSDEIPYNIVQ-------KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508
+ + ++ L+R + P +LL+DEP HLD L
Sbjct: 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD---VVAVAWL 237
Query: 509 LKQFKENKKTIVIISHD 525
+ K T +I+SHD
Sbjct: 238 ENYLQTWKITSLIVSHD 254
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 46.9 bits (111), Expect = 1e-05
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 18/210 (8%)
Query: 325 RLSNNTIT-AKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383
L N ++ R + R + +NL+ I G + G SG GK+ L +LG
Sbjct: 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434
Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH---DQNSLHIAQK 440
D SA I + E IL H L+ A +
Sbjct: 435 GRGEEKYRPDSGKVEVPKNTVSALIP------GEYEPEFGEVTILEHLRSKTGDLNAAVE 488
Query: 441 TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN- 499
G + +L Y+ + E+ ++ +L++++A P +LL+DE HLD
Sbjct: 489 ILNRAGLSDAVL-----YRRKF--SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL 541
Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529
A + + +E T+++++H P +
Sbjct: 542 TAVRVARKISELAREAGITLIVVTHRPEVG 571
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 46.5 bits (111), Expect = 2e-05
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 372 SNFLLCMLGLLTLEKGTISFGDRQI-SRDFIEKFSAQIGYLSQHCSLFP-ISITENIILS 429
S L + GLL GTI + +IG + Q LFP +++ EN+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 430 HDQN-SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANN 484
+ A++ + VG + + + Q++ ++R +
Sbjct: 61 LRDKEADARAEEALERVGLPDFL------------DRSPVGTLSGGQKQRVAIARALLKK 108
Query: 485 PAILLMDEP 493
P +LL+DEP
Sbjct: 109 PKLLLLDEP 117
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 46.3 bits (110), Expect = 2e-05
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 39/215 (18%)
Query: 328 NNTITAKNIVFR--DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385
+ +T KN+ + K R + N+S + G+ + G SG GK+ L + G T
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA- 59
Query: 386 KGTISFGDRQIS-RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443
G I+ G+ I+ R + F GY+ Q P +++ E + S L + Q+
Sbjct: 60 -GVIT-GEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRL 117
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
+G +A P+IL +DEP LD++A
Sbjct: 118 TIGVE--------------------------------LAAKPSILFLDEPTSGLDSQAAY 145
Query: 504 NFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIF 538
N LK+ ++ + I+ H P+ F +
Sbjct: 146 NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 46.4 bits (110), Expect = 2e-05
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 58/204 (28%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCML---GLLTLEKGTISFGDRQISRDFIEKFS 405
QNL +IP ++ G SG GKS + L G L F ++ FI++
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLI--FIDQLQ 69
Query: 406 AQI----GYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461
I GYL+ L +S E
Sbjct: 70 FLIDVGLGYLTLGQKLSTLSGGE------------------------------------- 92
Query: 462 YCSDEIPYNIVQKIRLSRIIANNP--AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519
+Q+++L+ + + P + ++DEP L + N ++K + T+
Sbjct: 93 ----------LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142
Query: 520 VIISHDPTIISMSDFSLIFHPIQG 543
++I H+ ++S +D+ + F P G
Sbjct: 143 ILIEHNLDVLSSADWIIDFGPGSG 166
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 44.6 bits (105), Expect = 7e-05
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+T K++ + + + +N+SF+I G + G +G GKS L L LL E G I
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQ 61
Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQ---KTAKIVGC 447
+ ++K+ G + Q +F + +N+ D + K A+ VG
Sbjct: 62 IDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL----DPYGKWSDEEIWKVAEEVGL 117
Query: 448 HEDILSL--KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
I + + + + Q + L+R + + ILL+DEP HLD
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 44.5 bits (105), Expect = 8e-05
Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG-------TISFGDRQISRDFIEKFSA 406
+I E I GP+G GK+ F+ + G+L ++G T+S+ + I D+
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 407 QIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466
SIT++ +H IA K +I + + +G +
Sbjct: 81 -----------LLSSITKDF-YTHPYFKTEIA-KPLQIEQILDREVPELSGGE------- 120
Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525
+Q++ ++ ++ + I L+DEP +LD E + ++++F EN +KT ++ HD
Sbjct: 121 -----LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
Query: 526 PTIISM-SDFSLIF 538
+I +D ++F
Sbjct: 176 IIMIDYLADRLIVF 189
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.5 bits (102), Expect = 2e-04
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 477 LSRIIANNPAI--LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534
LS ++ + L +DEP LD E +L++ + + I+IISH + +D
Sbjct: 832 LSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891
Query: 535 SLIFHPIQGS 544
+ G
Sbjct: 892 RIRVKKDGGR 901
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 43.3 bits (102), Expect = 2e-04
Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 41/230 (17%)
Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL---TLEKGTISFGDRQIS 397
KK I +++S I G ++ GP G GK+ L + G L G I++ +
Sbjct: 124 KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITY-NGHDL 182
Query: 398 RDFIEKFSAQIGYLSQHCSLFPISITENII---------------LSHDQNSLHIAQKTA 442
++F+ K + Y S+ FP + +S + +
Sbjct: 183 KEFVPK--KTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240
Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIP-YNIVQKIRLS--RIIANNPAILLMDEPLYHLDN 499
KI+G L + T +D + + ++ R+S ++ +IL DE LD+
Sbjct: 241 KILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDS 293
Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPT---------IISMSDFSLIFH 539
L+Q T ++ P+ +I +S+ I+
Sbjct: 294 STAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ 343
Score = 42.5 bits (100), Expect = 3e-04
Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 29/226 (12%)
Query: 327 SNNTITAKNIVF--RDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT- 383
+ ++ + + +R + N+S G + G SG GK+ L + G T
Sbjct: 784 FKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG 843
Query: 384 -LEKGTISFGDRQISRDFIEKFSAQIGYLSQ---HCSLFPISITENIILSHDQNSLHIAQ 439
+G I + E F+ GY+ Q H +++ E++ S
Sbjct: 844 GYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE--LTVRESLRFSAALRLPKEVS 898
Query: 440 KTAKIVGCHE--DILSLKNGYQTTYCSDEI------PYNIVQKIRLS---RIIANNPAIL 488
K E ++L LK +D + + Q+ RL+ ++AN +IL
Sbjct: 899 DEEKYEYVEEVIELLELKE------YADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952
Query: 489 LMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534
+DEP LD++A L++ + +TI+ H P+I F
Sbjct: 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF 998
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.1 bits (101), Expect = 2e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 448 HEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503
H+DI+ PY + QK+ ++ +AN P +L+ DEP ++ +
Sbjct: 148 HKDIMR------------SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195
Query: 504 NFYTLLKQFKENKKT-IVIISHDPTIIS 530
+ LL + +N T I++ISHD +IS
Sbjct: 196 QIFRLLSRLNQNSNTTILLISHDLQMIS 223
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 42.9 bits (101), Expect = 2e-04
Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 37/203 (18%)
Query: 329 NTITAKNIVFRDKKTS--RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE- 385
+T++ +NI F K I ++ S + G ++ G G G S L +
Sbjct: 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV 61
Query: 386 --KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442
+G I + ++F EK+ +I Y+S+ FP +++ E + +
Sbjct: 62 SVEGDIHYNGIP-YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA------------L 108
Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI--IANNPAILLMDEPLYHLDNE 500
+ G +E + + G ++ R+S + + ++L D LD+
Sbjct: 109 RCKG-NEFVRGISGG---------------ERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 501 AKNNFYTLLKQFKENKKTIVIIS 523
++ + KT +S
Sbjct: 153 TALEILKCIRTMADVLKTTTFVS 175
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 41.1 bits (96), Expect = 7e-04
Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
++ L+F I G +I GP+GCGKS+ + GL + G +S
Sbjct: 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN--------- 545
Query: 405 SAQIGYLSQHCSLFPISITENIIL---SHDQNSLHIAQK--TAKIVGCHEDILSLKNGYQ 459
I Y+ Q + ++ + II S + A + H + + + G
Sbjct: 546 --NIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW 603
Query: 460 TTYC--SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517
D + Q++ ++R+ + P L+DE + + + + K
Sbjct: 604 DAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GI 660
Query: 518 TIVIISHDPTIISMSDFSLIF 538
+++ I+H P++ L F
Sbjct: 661 SLLSITHRPSLWKYHTHLLEF 681
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 39.2 bits (91), Expect = 0.003
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 19/207 (9%)
Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386
S+ I + F+ K + + + + +P GS C++ G +G GK+ L + G +
Sbjct: 10 SDFAIEVSGLQFKYKVSDPIF-FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68
Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA-------- 438
G + R D + S + YL S E + L D ++ H+
Sbjct: 69 GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE-VPLQGDISAEHMIFGVGGDDP 127
Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498
++ K++ DIL + ++ SD +++++ + +LL+DE LD
Sbjct: 128 ERREKLI----DILDIDLRWRMHKVSD----GQRRRVQICMGLLKPFKVLLLDEVTVDLD 179
Query: 499 NEAKNNFYTLLKQFKENKK-TIVIISH 524
A+ + LK+ E + TIV +H
Sbjct: 180 VLARADLLEFLKEECEQRGATIVYATH 206
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 39.0 bits (91), Expect = 0.003
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ 413
I +G I GP+G GK+ F+ + G++ ++G S D ++S Y Q
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG--SEEDLKVS------------YKPQ 408
Query: 414 HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQ 473
+ S E+++ S +++ + +IV L+L++ + DE+ +Q
Sbjct: 409 YISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV----KPLNLEDLLERPV--DELSGGELQ 462
Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHDPTIISM- 531
++ ++ ++ + L+DEP +LD E + ++++F EN +KT +++ HD +I
Sbjct: 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522
Query: 532 SDFSLIF 538
SD ++F
Sbjct: 523 SDRLIVF 529
Score = 34.8 bits (80), Expect = 0.070
Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-M 531
Q++ ++ + + + DEP +LD + N ++++ E+ K ++++ HD ++ +
Sbjct: 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYL 279
Query: 532 SDF 534
SDF
Sbjct: 280 SDF 282
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 38.2 bits (89), Expect = 0.006
Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 46/227 (20%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
+N+ IP +I G SG GKS +L TI + + Q R ++E SA
Sbjct: 12 KNVDVDIPRNKLVVITGVSGSGKS----------SLAFDTI-YAEGQ--RRYVESLSA-- 56
Query: 409 GYLSQHCSLFPISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDI------------ 451
Y Q ++I ++ DQ + ++ VG +I
Sbjct: 57 -YARQFLGQMDKPDVDSIEGLSPAIAIDQKT--TSRNPRSTVGTVTEIYDYLRLLFARVG 113
Query: 452 --------LSLKNGYQTTYCSDE-IPYNIVQKIRLSRIIANN--PAILLMDEPLYHLDNE 500
+ + GY T S + Q+IRL+ I + + ++DEP L
Sbjct: 114 IRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173
Query: 501 AKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFG 547
+ LK+ ++ T++++ HD I +D + P G G
Sbjct: 174 DNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 38.1 bits (88), Expect = 0.007
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 472 VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS 530
+Q++ ++ + N L DEP +LD E + N +++ +E KKT +++ HD ++
Sbjct: 77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136
Query: 531 -MSDFSLIFH 539
+SD +F
Sbjct: 137 YLSDRIHVFE 146
Score = 28.0 bits (62), Expect = 7.0
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391
+ EG I GP+G GK+ + + G L +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 37.8 bits (88), Expect = 0.009
Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 14/192 (7%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL--LTLEKGTISFGDRQI-SRDFIEK 403
I + ++ T+ EG I GP+G GKS ++G + +G I F I E+
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 404 FSAQIGYLSQHCSLFP-------ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456
A I Q+ P + N ++ + ++L L
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKA----ELLGLDE 134
Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
+ Y ++ ++ + +++ P + ++DEP LD +A + +E
Sbjct: 135 EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194
Query: 517 KTIVIISHDPTI 528
+ ++II+H +
Sbjct: 195 RGVLIITHYQRL 206
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 36.9 bits (85), Expect = 0.016
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 26/218 (11%)
Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
+SFT+ EG I G +G GKS + G++ G I D + S +I
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 411 LSQHCSL-------------FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457
+ Q + FP+ + + L +Q I + T ++VG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTD--LEPEQRRKQIFE-TLRMVGLLPD------- 141
Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK- 516
Y + Q++ L+R + P I++ DE L LD ++ L+ + +E +
Sbjct: 142 -HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 517 -KTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIF 553
I + H I +SD L+ H + G T D+
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 35.5 bits (82), Expect = 0.043
Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 36/181 (19%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISR-DFIEK 403
I + ++ TI +G + GP+G GKS ++G E +G I F I+ E+
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 404 FSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463
I Q+ P I +KN Y
Sbjct: 75 ARLGIFLAFQY----PPEIPG-----------------------------VKNADFLRYV 101
Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523
++ ++ + +++ P + ++DEP LD +A ++ + +E K+++II+
Sbjct: 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT 161
Query: 524 H 524
H
Sbjct: 162 H 162
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 33.6 bits (77), Expect = 0.15
Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 33/185 (17%)
Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-- 419
+I G +G GK+ + + LT E S G I + +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKG-GAHDPKLIRE-GEVRAQVKLAFENANGK 83
Query: 420 -------ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV 472
++I EN+I H S E +L+ +++
Sbjct: 84 KYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLA----------------SLI 127
Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT----IVIISHDPTI 528
++ L+ +N IL +DEP +LD E +L + +E K +++I+HD +
Sbjct: 128 IRLALAETFGSNCGILALDEPTTNLDEENIEE--SLAEIIEERKSQKNFQLIVITHDEEL 185
Query: 529 ISMSD 533
+ +D
Sbjct: 186 VDAAD 190
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 33.3 bits (76), Expect = 0.17
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 477 LSRIIANNPAI----LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532
LS ++ N L +DE LD EA T L+ + + + +ISH +
Sbjct: 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199
Query: 533 DFSLIFHPIQGS 544
L G
Sbjct: 200 PQRLEVIKTPGG 211
>gnl|CDD|33393 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD
family [DNA replication, recombination, and repair].
Length = 581
Score = 33.4 bits (76), Expect = 0.17
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443
L K I + +S FS ++ L ++ + + + T +
Sbjct: 211 LTKIEIRLKLKAVSELLEHYFSEVGKPQARERLLLRLNQNLKDSDLS-KYLKILLRNTKQ 269
Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA------NNPAILLMDEPLYHL 497
I +I S G N++ L I + P ILL++EP HL
Sbjct: 270 I-----EIESNGLGL----------NNLIAMQLLQAIGSLELERVARPNILLIEEPEAHL 314
Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537
+ + + LL + IV +H P ++S++D I
Sbjct: 315 HPQLQAVLWDLLNNLPLGLQRIV-TTHSPHLLSLADLDSI 353
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 32.2 bits (73), Expect = 0.37
Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 472 VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISM 531
+Q++ ++ +A + DEP +LD + + N L+++ E+ ++++ HD ++
Sbjct: 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204
Query: 532 -SDF 534
SD+
Sbjct: 205 LSDY 208
>gnl|CDD|144199 pfam00519, PPV_E1_C, Papillomavirus helicase. This protein is a
DNA helicase that is required for initiation of viral
DNA replication. This protein forms a complex with the
E2 protein pfam00508.
Length = 432
Score = 32.1 bits (74), Expect = 0.43
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-ISF 391
IP+ +C +I GP GKS F CM L+ G ISF
Sbjct: 259 IPKKNCLVIYGPPDTGKSMF--CM-SLIKFLGGKVISF 293
>gnl|CDD|145643 pfam02604, PhdYeFM, Phd_YefM. This domain complexes with
pfam06769.
Length = 75
Score = 31.9 bits (73), Expect = 0.44
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 499 NEAKNNFYTLLKQFKENKKTIVIISHD-PT--IISMSDF 534
+EAKNN LL + ++ ++ ++I P ++S+ ++
Sbjct: 7 SEAKNNLSELLDRVEKGEEPVIITRRGKPVAVLLSLEEY 45
>gnl|CDD|38765 KOG3557, KOG3557, KOG3557, Epidermal growth factor receptor kinase
substrate [Signal transduction mechanisms].
Length = 721
Score = 32.0 bits (72), Expect = 0.49
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 113 ISSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGS 153
+ L +LK I P P L+ LFTP+ +I+ P L +
Sbjct: 339 FNLLAKLKGHIHDPSAPELVHFLFTPLALIVEASSGPELAA 379
>gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 31.2 bits (70), Expect = 0.77
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
++++D+P+ D+ L+K+ K N K +++++H+
Sbjct: 558 VVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN 596
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 30.7 bits (69), Expect = 1.2
Identities = 17/72 (23%), Positives = 25/72 (34%)
Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404
T EGS II GP+G GKS L + L + + +
Sbjct: 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV 67
Query: 405 SAQIGYLSQHCS 416
SA++ + S
Sbjct: 68 SAELIFTRLQLS 79
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 30.5 bits (69), Expect = 1.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG-----LLTLEKGTISFGDRQISRDFIEK 403
+N+ IP G + G SG GKS+ + L L L+K DR + I+K
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDK 71
Score = 29.4 bits (66), Expect = 3.0
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
Q+I+L++ + + + ++DEP L +L++ + T+V+I H+ +I
Sbjct: 176 QRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235
Query: 530 SMSDFSLIFHPIQGSLFG 547
+D+ + P G G
Sbjct: 236 KCADWIIDLGPEGGDGGG 253
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 30.3 bits (68), Expect = 1.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525
Q++ L+ + + L+DEP +LD+E + ++K+F KKT ++ HD
Sbjct: 463 QRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD 516
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 30.3 bits (68), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
G ++ G SG GKS + +L L + G IS
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEIS 196
>gnl|CDD|79364 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins.
This ClC family presents in bacteria, where it
facilitates acid resistance in acidic soil. Mutation of
this gene (sycA) in Rhizobium tropici CIAT899 causes
serious deficiencies in nodule development, nodulation
competitiveness, and N2 fixation on Phaseolus vulgaris
plants, due to its reduced ability for acid resistance.
This family is part of the ClC chloride channel
superfamiy. These proteins catalyse the selective flow
of Cl- ions across cell membranes and Cl-/H+ exchange
transport. These proteins share two characteristics that
are apparently inherent to the entire ClC chloride
channel superfamily: a unique double-barreled
architecture and voltage-dependent gating mechanism. The
gating is conferred by the permeating anion itself,
acting as the gating charge..
Length = 378
Score = 30.1 bits (68), Expect = 1.9
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 21 TILPSFFINIL-YLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRSRL 79
++P I+ + + I ++ L + + L + FG + RL
Sbjct: 162 ALIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLD--PLLFVKVILAGIIFG---LAGRL 216
Query: 80 LIESSHLIERFFKPYI 95
E H +++ K I
Sbjct: 217 FAELLHFLKKLLKKRI 232
>gnl|CDD|29831 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group..
Length = 579
Score = 29.8 bits (67), Expect = 2.2
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNF 374
L T PEG A PS CGK+N
Sbjct: 232 LGVTNPEGEKKYFAAAFPSACGKTNL 257
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 29.4 bits (66), Expect = 2.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFL 375
+N+ IP G + G SG GKS +
Sbjct: 618 KNIDVEIPLGVFTCVTGVSGSGKSTLI 644
Score = 29.0 bits (65), Expect = 3.6
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
Q+++L++ + + + ++DEP L + +L + + T+++I H+ +I
Sbjct: 829 QRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI 888
Query: 530 SMSDF 534
+D+
Sbjct: 889 KTADW 893
Score = 28.2 bits (63), Expect = 6.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKS 372
I R + L +N+ IP +I G SG GKS
Sbjct: 2 MMDKIRIRGAREHNL--KNIDLEIPRNKLVVITGLSGSGKS 40
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 29.6 bits (67), Expect = 2.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 352 SFTIPEGSCCIIAGPSGCGKSN 373
+ P G I+ GP+G GKSN
Sbjct: 17 TIPFPPGLTAIV-GPNGSGKSN 37
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit;
Validated.
Length = 327
Score = 29.7 bits (67), Expect = 2.5
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
G Q CS PYN ++ S I +NNP I LY+L E +N Y L K
Sbjct: 142 GLQIVACS--TPYNAKGLLK-SAIRSNNPVIFFEHVLLYNLKEEIPDNEYLL----PLEK 194
Query: 517 KTIVIISHDPTIISMS 532
+V +D TI++ S
Sbjct: 195 AEVVRPGNDITILTYS 210
>gnl|CDD|144423 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. Catalyses the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 29.5 bits (67), Expect = 2.5
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNFLLCML 379
L T PEG IA PS CGK+N L ML
Sbjct: 234 LGITNPEGRKKYIAAAFPSACGKTN--LAML 262
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 29.4 bits (66), Expect = 2.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+G ++ G SG GKS + +L L L G IS
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.2 bits (65), Expect = 3.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 352 SFTIPEGSCCIIAGPSGCGKSNFL 375
G I+ GP+G GKSN +
Sbjct: 19 EINFSPGFTAIV-GPNGSGKSNIV 41
>gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily. Miro (mitochondrial Rho) proteins
have tandem GTP-binding domains separated by a linker
region containing putative calcium-binding EF hand
motifs. Genes encoding Miro-like proteins were found in
several eukaryotic organisms. This CD represents the
putative GTPase domain in the C terminus of Miro
proteins. These atypical Rho GTPases have roles in
mitochondrial homeostasis and apoptosis. Most Rho
proteins contain a lipid modification site at the
C-terminus; however, Miro is one of few Rho subfamilies
that lack this feature.
Length = 169
Score = 28.7 bits (65), Expect = 3.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 361 CIIAGPSGCGKSNFLLCMLG 380
C + G G GKS L LG
Sbjct: 7 CFVLGAKGSGKSALLRAFLG 26
>gnl|CDD|32701 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 28.7 bits (64), Expect = 4.1
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410
IP GS +I G +G GKS G L R+FI K + Y
Sbjct: 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFI-KQMESLSY 80
>gnl|CDD|33669 COG3880, COG3880, Uncharacterized protein with conserved CXXC pairs
[Function unknown].
Length = 176
Score = 28.8 bits (64), Expect = 4.7
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456
Y +H +F I + L + + I Q+ +++GCH ++ K
Sbjct: 40 YDIEHILVFSIHNVLSGELDNLKTKWQIEQEDEELLGCHNCGMTFKE 86
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.7 bits (65), Expect = 4.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390
+G ++AG SG GKS L +L L L G IS
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLPELDLRTGEIS 67
>gnl|CDD|29989 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 ..
Length = 235
Score = 28.2 bits (63), Expect = 5.5
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCM 378
I GS I G G GK+ +
Sbjct: 16 IETGSITEIFGEFGSGKTQLCHQL 39
>gnl|CDD|36919 KOG1707, KOG1707, KOG1707, Predicted Ras related/Rac-GTP binding
protein [Defense mechanisms].
Length = 625
Score = 28.4 bits (63), Expect = 6.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 361 CIIAGPSGCGKSNFLLCMLG 380
C + GP CGKS L LG
Sbjct: 428 CFVVGPKNCGKSALLQSFLG 447
>gnl|CDD|34572 COG4965, TadB, Flp pilus assembly protein TadB [Intracellular
trafficking and secretion].
Length = 309
Score = 27.9 bits (62), Expect = 7.3
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 5 KYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIG 48
K A + S + + LP ++YL +P Y+ ++ G
Sbjct: 240 KVRALSAEARMSAWILGALPLLVGLLIYLLSPDYLSFLWTDPTG 283
>gnl|CDD|30816 COG0468, RecA, RecA/RadA recombinase [DNA replication,
recombination, and repair].
Length = 279
Score = 28.0 bits (62), Expect = 7.5
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQH 414
+P G I GP GK+ L ++ G +F D + + D Q
Sbjct: 57 LPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALD--------PERAKQL 108
Query: 415 CSLFPISITENIILSHDQNS---LHIAQKTAKIVGCHEDIL---SLKNGYQTTYCSDEIP 468
+ +N+++S L IA+K A+ D+L S+ + D
Sbjct: 109 GV----DLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDG-- 162
Query: 469 YNIVQKIRLSR 479
+ ++ LS+
Sbjct: 163 HLGLRARLLSK 173
>gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB..
Length = 226
Score = 27.9 bits (62), Expect = 8.0
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRD----FIEKFSAQIGY 410
IP G I G G GK+ L + L + + D F + Q+
Sbjct: 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA- 74
Query: 411 LSQHCSLFPISITENIILSHDQNS---LHIAQKTAKI 444
L P + +NI ++ N L I ++ +I
Sbjct: 75 --VRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERI 109
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 27.7 bits (62), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
I + L+ +I +G I GP+G GKS
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTL 49
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 27.8 bits (62), Expect = 8.6
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 489 LMDEPLYHLDNEA--KNNFYTLLKQFKENKKTIVIISHDPTIISM 531
L + +D A N LL + + K ++I+SH TI ++
Sbjct: 70 LFEGLPVEVDPRARVLNALLELLARHLLDGKNVLIVSHGGTIRAL 114
>gnl|CDD|33744 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid
metabolism].
Length = 194
Score = 27.6 bits (61), Expect = 8.8
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 238 VTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNV 294
+ L I W+ + GAI+ +S I AR MA +I+ + L V
Sbjct: 1 LKNKLARKFDEEISFFKGWID--NPRTVGAILPSSSILARKMA---SVIDPESGLPV 52
>gnl|CDD|30594 COG0245, IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[Lipid metabolism].
Length = 159
Score = 27.4 bits (61), Expect = 9.4
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 511 QFKENKKTI---VIISHDPTIISMSDFSLIFHPIQGSLFGLTQ--DIFKFNTVTHNQIKI 565
+F E + I V I H+ ++ SD ++ H + +L G DI K T + K
Sbjct: 11 RFGEGRPLILGGVEIPHEKGLLGHSDGDVLLHALTDALLGAAGLGDIGKHFPDTDPRWKG 70
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 27.6 bits (62), Expect = 9.8
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387
L + I + ++ GP G GK+ L C LG G
Sbjct: 40 GLDW-IEQAENLLLLGPPGVGKT-HLACALGHQACRAG 75
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.139 0.403
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,700,599
Number of extensions: 369136
Number of successful extensions: 2044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1869
Number of HSP's successfully gapped: 305
Length of query: 565
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 466
Effective length of database: 4,124,446
Effective search space: 1921991836
Effective search space used: 1921991836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)