RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] (565 letters) >gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]. Length = 580 Score = 311 bits (797), Expect = 5e-85 Identities = 149/545 (27%), Positives = 257/545 (47%), Gaps = 17/545 (3%) Query: 18 FCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRS 77 F L S IN+L LT PLYM+ +YD V+ ++S L+ L+ + L LYA D IRS Sbjct: 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRS 84 Query: 78 RLLIESSHLIER------FFKPYIITVTKKYEMDGTSLFSIISSLDQLKQFITSPVLPAL 131 R+L+ ++R F + + ++ DG + LDQ++QF+T L A Sbjct: 85 RVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQ---PLRDLDQVRQFLTGTGLTAF 141 Query: 132 LDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFG 191 D + P+++ + F HP LG A+ I+L+ + +L + + + ++ Sbjct: 142 FDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLA 201 Query: 192 KAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSIL 251 A L N+E I A L W + A Q + + ++++ LRM LQS++L Sbjct: 202 DATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVL 261 Query: 252 GIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTL 311 G+GAWLVI +++ G +IA SI++ RA+AP++ I + K +S K L L Sbjct: 262 GLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRL------NEL 315 Query: 312 LNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371 L + E + + ++ + + + I + +SF + G I GPSG GK Sbjct: 316 LAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGK 375 Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431 S ++G+ G++ + + E+ IGYL Q LF +I ENI + Sbjct: 376 STLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE 435 Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILL 489 + + A++ G HE IL L GY T + Q+ I L+R + +P +++ Sbjct: 436 EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV 495 Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLT 549 +DEP +LD+E + + K T+V+I+H P+ ++ D L+ + + FG Sbjct: 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPR 555 Query: 550 QDIFK 554 +++ Sbjct: 556 EEVLA 560 >gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]. Length = 709 Score = 204 bits (520), Expect = 5e-53 Identities = 129/543 (23%), Positives = 233/543 (42%), Gaps = 24/543 (4%) Query: 11 MKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFF 70 + Y +L S + +L L PL+ + D V+ S+ L L+ L Sbjct: 149 LFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEA 208 Query: 71 GFDLIRSRLLIESSH-----LIERFFKPYIITVTKKYEMDGT-SLFSIISSLDQLKQFIT 124 L+R+ L+ L RFF+ + +E + S + L+Q+++F+T Sbjct: 209 LLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLT 268 Query: 125 SPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSR 184 +L ++D+LF IF+ + F L + + L + IT++FQ R R+ + Sbjct: 269 GSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEES 328 Query: 185 QDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244 ++ +F + E + A + + W+ + ++ K + + T++ Sbjct: 329 AEQQSFLVETIKGIETVKALAAEPRFRSQWDN---RLAKQVNIGFKTEKLALILN-TIKS 384 Query: 245 TLQS----SILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300 LQ IL GA LV+ +L+ G ++A +++ ++P+ ++ ++ Sbjct: 385 LLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQ---QAKV 441 Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360 L L D + K I + I +N+ FR + ++LS IP G Sbjct: 442 ALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501 Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 I G SG GKS L +LGL ++G I ++ + Q+GY+ Q LF Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561 Query: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIR 476 SI ENI L + + + + A++ G HE I +L GY T E N+ Q++ Sbjct: 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV--GEGGANLSGGQRQRLA 619 Query: 477 LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536 L+R + + P ILL+DE LD E + L Q + +T++II+H + I +D + Sbjct: 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIIIAHRLSTIRSADRII 678 Query: 537 IFH 539 + Sbjct: 679 VLD 681 >gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]. Length = 567 Score = 154 bits (391), Expect = 5e-38 Identities = 111/538 (20%), Positives = 214/538 (39%), Gaps = 14/538 (2%) Query: 10 FMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFL--YA 67 + + + IL +L L PL + I D+++ ++ + L + L L Sbjct: 8 LKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGV 67 Query: 68 LFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMD---GTSLFSIISSLDQLKQFIT 124 L + SRL + + R ++ + + G + + + ++ + ++ Sbjct: 68 LRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVS 127 Query: 125 SPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSR 184 + ++ IL ++L F + L +L LL + L + +L RR +++ Sbjct: 128 TVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187 Query: 185 QDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244 + L I A D L + + + ++ + L Sbjct: 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 Query: 245 TLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN 304 +L +G +LV+ L+ GA+ A + R + P+ Q+ L + + L Sbjct: 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307 Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIA 364 L D + + P ++ + +I +N+ F ++ +++SF+I G I Sbjct: 308 LLD-----EEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVL-KDISFSIEPGEKVAIV 361 Query: 365 GPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITE 424 GPSG GKS + +L L G I I ++ +IG +SQ LF +I E Sbjct: 362 GPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRE 421 Query: 425 NIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIA 482 NI L + ++ K+ HE I +L +GY T + + Q+ RL+ R + Sbjct: 422 NIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 Query: 483 NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540 NP IL++DE LD E + LK+ + +T +II+H + I +D ++ Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLKG-RTTLIIAHRLSTIKNADRIIVLDN 538 >gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1228 Score = 118 bits (298), Expect = 4e-27 Identities = 72/321 (22%), Positives = 124/321 (38%), Gaps = 8/321 (2%) Query: 224 YQSLIAKKYYFGISVTKTLRMTLQSSILGI--GAWLVIHQKLSAGAIIATSIITARAMAP 281 + I K + G+ + T + S L G+ L+++ + G +I Sbjct: 244 LKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMS 303 Query: 282 LEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-D 340 L Q + + + D ++ +S I +N+ F Sbjct: 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSS--IKGEIEFRNVCFSYP 361 Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF 400 + I + +S IP G + GPSG GKS + + G + I Sbjct: 362 SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLN 421 Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 ++ +QIG +SQ LF +I ENI + ++ AK H+ IL L +GY T Sbjct: 422 LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 Query: 461 TYCSDEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 + + QK R ++R + NP ILL+DE LD E++ L + + + T Sbjct: 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541 Query: 519 IVIISHDPTIISMSDFSLIFH 539 IV ++H + I +D + Sbjct: 542 IV-VAHRLSTIRNADKIAVME 561 Score = 90.3 bits (224), Expect = 1e-18 Identities = 87/420 (20%), Positives = 166/420 (39%), Gaps = 31/420 (7%) Query: 132 LDILFTPIFIILSFCIHPILGSW----AILSGILLLTITILFQANN-ERLERRYKKSRQD 186 L ++ I ++ I + W +L+ LL ++ Q + + KK+ ++ Sbjct: 786 LSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE 845 Query: 187 EINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTL 246 + N + A + + + ++ ++ G +++L + Sbjct: 846 ASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFV 905 Query: 247 QSSILGIGAWLVIHQKLSAGAII---------ATSIITARAMAPLEQIINSKKSLNVGLK 297 + GA L+ + +++ + A ++ A + AP I +K + Sbjct: 906 YALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP--DISKAKIAAG---- 959 Query: 298 SLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIP 356 S+ +++ ++S K + I +N+ F + + NLS +I Sbjct: 960 SIFEILDRKPTIDPDSTSGGKLPNV-----KGDIEFRNVSFAYPTRPDVPVLNNLSLSIR 1014 Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCS 416 G + GPSG GKS + + + G + I ++ QIG +SQ Sbjct: 1015 AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 Query: 417 LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD---EIPYNIVQ 473 LF +I ENI ++ S + AK+ H I SL GY T + ++ Q Sbjct: 1075 LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYD-TRVGERGVQLSGGQKQ 1133 Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 +I ++R I NP ILL+DE LD+E++ L + E + TIV I+H + I +D Sbjct: 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIV-IAHRLSTIQNAD 1192 >gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.. Length = 173 Score = 116 bits (293), Expect = 1e-26 Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 40/209 (19%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + +N+ FR + +N+SF+I G I GPSG GKS +LGLL G + Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 IS+ + +GYL Q LF SI EN ILS Q Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN-ILSGGQ------------------ 101 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 Q++ L+R + NP IL++DEP HLD E + + Sbjct: 102 ---------------------RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 Query: 511 QFKENKKTIVIISHDPTIISMSDFSLIFH 539 K T ++I+H P ++ +D L+ Sbjct: 141 ALKAAGATRIVIAHRPETLASADRILVLE 169 >gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 211 Score = 109 bits (275), Expect = 2e-24 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 25/204 (12%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393 KN+ F +R ++S TI +G +I GP+G GKS L + GLL G + Sbjct: 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 Query: 394 RQISRDFIEKFSAQIGYLSQHCS--LFPISITENIILSHDQNSL------HIAQKTAKIV 445 + +++ +++ ++G + Q+ F ++ E + + L ++ ++V Sbjct: 63 KDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV 122 Query: 446 GC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEA 501 G +L G + Q++ ++ ++A +P ILL+DEP LD Sbjct: 123 GLEGLRDRSPFTLSGGQK-------------QRVAIAGVLAMDPDILLLDEPTAGLDPAG 169 Query: 502 KNNFYTLLKQFKENKKTIVIISHD 525 + LLK+ K KTI+I++HD Sbjct: 170 RRELLELLKKLKAEGKTIIIVTHD 193 >gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 254 Score = 107 bits (268), Expect = 9e-24 Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 35/217 (16%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 I +N+ +R + +++S ++ +G + GP+G GKS L +LGLL Sbjct: 1 MMPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSL---FPISITE----------NIILSHDQN 433 G I + + + + +IGY+ Q S+ FPI++ + ++ Sbjct: 59 GEIKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115 Query: 434 SLHIAQKTAKIVG----CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILL 489 + + VG I L G + Q++ L+R +A NP +LL Sbjct: 116 DKEKVDEALERVGMEDLRDRQIGELSGGQK-------------QRVLLARALAQNPDLLL 162 Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDP 526 +DEP +D + Y LLK+ ++ KT+++++HD Sbjct: 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199 >gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 171 Score = 106 bits (267), Expect = 1e-23 Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 41/203 (20%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I KN+ F + + +++S TI G I GPSG GKS L +L L G I Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 + +E I Y+ Q LF +I EN ILS Q Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIREN-ILSGGQR----------------- 102 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 Q+I ++R + +P IL++DE LD E + L+ Sbjct: 103 ----------------------QRIAIARALLRDPPILILDEATSALDPETEALILEALR 140 Query: 511 QFKENKKTIVIISHDPTIISMSD 533 + KT+++I+H + I +D Sbjct: 141 ALAKG-KTVIVIAHRLSTIRDAD 162 >gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.. Length = 238 Score = 105 bits (265), Expect = 2e-23 Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 6/213 (2%) Query: 331 ITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 I KN+ FR + I + LS TIP G + G SGCGKS + + G I Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60 Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449 I + +QIG +SQ LF +I ENI + ++ AK H+ Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120 Query: 450 DILSLKNGYQTTYCSD---EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 I+SL +GY T + ++ Q+I ++R + NP ILL+DE LD E++ Sbjct: 121 FIMSLPDGYDTL-VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179 Query: 507 TLLKQFKENKKTIVIISHDPTIISMSDFSLIFH 539 L + + +T ++I+H + I +D + Sbjct: 180 EALDRAMKG-RTTIVIAHRLSTIRNADLIAVLQ 211 >gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 105 bits (265), Expect = 3e-23 Identities = 49/220 (22%), Positives = 103/220 (46%), Gaps = 13/220 (5%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 + +N+ + + +++S ++ EG + GPSGCGKS L + GL G Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60 Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447 + ++ GY+ Q +L P +++ +N+ L + + A+ + Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 E ++ L G++ Y ++ + Q++ L+R +A +P +LL+DEP LD + Sbjct: 116 LE-LVGLS-GFENAY-PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 Query: 508 -LLKQFKENKKTIVIISHDPT-IISMSDFSLIFHPIQGSL 545 LL ++E KT+++++HD + ++D ++ G + Sbjct: 173 ELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRI 212 >gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 716 Score = 105 bits (263), Expect = 4e-23 Identities = 116/531 (21%), Positives = 197/531 (37%), Gaps = 34/531 (6%) Query: 15 FSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFG--- 71 F ++ L + FI P Y+ + D++ AL L LF Sbjct: 153 FVLLLVSSLINMFI-------PYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGAL 203 Query: 72 FDLIRSRLLIESSHLIERFFKPYIITVTKKYEM---DGTSLFSIISSLDQLKQFITSPVL 128 + IR LL + + + + + ++ D +IS L Q I S + Sbjct: 204 ANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQ-IVSNSV 262 Query: 129 PALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKK-SRQDE 187 L + SW L+ + L+ + I+ + +K S+Q + Sbjct: 263 SQNLSDGLRNLVQGFGGLGFMFSLSWR-LTLVTLIVVPIVALVAK-IYGKYLRKLSKQTQ 320 Query: 188 INFGKAILHNSEYIYAPST-RDF------LLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240 +A E + A T R F + Y K R + + F S T Sbjct: 321 DALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS-TN 379 Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300 L SIL G LV+ L++GA+ + + + + L + + L G+ + + Sbjct: 380 LLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASE 439 Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGS 359 + L D + + + P ++ I +++ F + + +NLSFTI G Sbjct: 440 RVFELMDRKPRIPLTGTLA-PDHLQ---GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE 495 Query: 360 CCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP 419 + GPSG GKS +L G I IS + +IG + Q LF Sbjct: 496 VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS 555 Query: 420 ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL-- 477 SI ENI D + + AK+ HE I + +GY T + QK R+ Sbjct: 556 GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615 Query: 478 SRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTI 528 +R + NP +L++DE LD E++ L + + + +VI T+ Sbjct: 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV 666 >gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 559 Score = 105 bits (263), Expect = 4e-23 Identities = 75/334 (22%), Positives = 128/334 (38%), Gaps = 25/334 (7%) Query: 218 RATSQEYQSLIAKKYYFGISVTKTLRMTLQSS--------------ILGIGAWLVIHQKL 263 T + + F + LR+ SS + IG L+ L Sbjct: 196 GRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDL 255 Query: 264 SAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPIS 323 + A + I+ PL + + + G + L L + S K E Sbjct: 256 TLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA- 314 Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 I+ +N+ FR + +L+ TI G + G SG GKS L +LG L Sbjct: 315 -NEPPIEISLENLSFRYPDGKPAL-SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443 +G I + E + QI ++SQ+ LF +I ENI+L+ S Sbjct: 373 PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALD 432 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDN 499 G + + +G T E + Q++ L+R + + ++LL+DEP HLD Sbjct: 433 QAGL-LEFVPKPDGLDTVI--GEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489 Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTIISMSD 533 E + L++ + KT+++I+H + +D Sbjct: 490 ETEQIILQALQELAKQ-KTVLVITHRLEDAADAD 522 >gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 213 Score = 105 bits (263), Expect = 4e-23 Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 8/193 (4%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 +LS T+ G + GPSGCGK+ L + GL + G I R ++ E+ IG Sbjct: 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER--RNIG 75 Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468 + Q +LFP +++ ENI + A+ A++ E + + E+ Sbjct: 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARV---RELLELVGLEGLLNRYPHELS 132 Query: 469 YNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISHDPT 527 Q++ L+R +A P++LL+DEPL LD + + LK+ +E T + ++HD Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 Query: 528 -IISMSDFSLIFH 539 ++++D + + Sbjct: 193 EALALADRIAVMN 205 >gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 248 Score = 104 bits (261), Expect = 7e-23 Identities = 46/190 (24%), Positives = 95/190 (50%), Gaps = 15/190 (7%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++++ ++ +G I GPSGCGKS L + GL G + R ++ I Sbjct: 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTYCSD 465 GY+ Q +L P +++ +N+ L + A+ + +++L L G++ Y Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERA----KELLELVGLAGFEDKYP-H 129 Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVIISH 524 ++ + Q++ ++R +A P +LL+DEP LD + L + ++E +KT+++++H Sbjct: 130 QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189 Query: 525 DPT-IISMSD 533 D + ++D Sbjct: 190 DVDEAVYLAD 199 >gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.. Length = 213 Score = 103 bits (259), Expect = 1e-22 Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 35/204 (17%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 + +++SF + G I GP+G GKS L +LGLL G+I + + ++ Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE---- 66 Query: 404 FSAQIGYLSQHCSL---FPISITE----------NIILSHDQNSLHIAQKTAKIVGC--- 447 +IGY+ Q S+ FPIS+ + + + + + VG Sbjct: 67 -RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL 125 Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 I L G Q Q++ L+R + +P +LL+DEP +D + + + Y Sbjct: 126 ADRQIGELSGGQQ-------------QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172 Query: 507 TLLKQFKENKKTIVIISHDPTIIS 530 LL++ + TI++++HD ++ Sbjct: 173 ELLRELRREGMTILVVTHDLGLVL 196 >gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220 Score = 103 bits (259), Expect = 1e-22 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 13/215 (6%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ F N+S TI G I G G GKS L + GL G++ Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62 Query: 391 FGD---RQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447 RQ+ + + IGY+ Q +LF ++ +NI L + A++ G Sbjct: 63 LDGTDIRQLDPADLRR---NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 + + NG E + Q + L+R + N+P ILL+DEP +D ++ Sbjct: 120 TDFVNKHPNGLDLQI--GERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177 Query: 504 NFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIF 538 L+Q + KT++II+H P+++ + D ++ Sbjct: 178 RLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVM 211 >gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 178 Score = 102 bits (257), Expect = 2e-22 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 41/180 (22%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR--DFIEKFSAQ 407 ++S I G + GPSG GKS L C+ GL + G+I ++ D + + Sbjct: 18 DVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 Query: 408 IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466 IG + Q +LFP +++ ENI L L G Q Sbjct: 78 IGMVFQDFALFPHLTVLENI------------------------ALGLSGGQQ------- 106 Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525 Q++ L+R +A +P +LL+DEP LD + LLK + T+V+++HD Sbjct: 107 ------QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160 >gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]. Length = 573 Score = 101 bits (252), Expect = 6e-22 Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 30/477 (6%) Query: 84 SHLIERFFK---PYIITVTKKYEMDGTSLFSIISSLDQLKQF---ITSPVLPALLDILFT 137 S L R F+ P + +Y G L +++ +D L + +P + AL+ I Sbjct: 91 SALRVRLFEKLEPLSPALLLRYR-SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVV 149 Query: 138 PIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKSRQDEINFGKAILHN 197 I LSF L A+L G++LL + ++ L R + + G+A L + Sbjct: 150 TIG--LSF-FSIPL---ALLLGLILLLLLLIIPT----LFYRAGRKFGAHLAQGRAALRS 199 Query: 198 SEYIYAPSTRDFLL-----TYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILG 252 + + L+ Y AT + K+ F L + ++G Sbjct: 200 QFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG 259 Query: 253 IGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLKYLINLNDFTTLL 312 + W+ A A ++ A LE L + + + +L Sbjct: 260 LLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLG--QVIASARRLNDIL 317 Query: 313 NSSDSKKEPIS-MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGK 371 + P + + +N+ F +N + T+ +G I G SG GK Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 Query: 372 SNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431 S L + G ++G+I+ +I+ + I L+Q LF ++ +N+ L++ Sbjct: 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP 437 Query: 432 QNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILL 489 S + VG + + S +G T + ++ RL +R + ++ + L Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF 546 +DEP LD + LL + E KT+++++H + I G + Sbjct: 498 LDEPTEGLDPITERQVLALLFEHAEG-KTLLMVTHRLR--GLERMDRIIVLDNGKII 551 >gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]. Length = 591 Score = 101 bits (252), Expect = 8e-22 Identities = 106/546 (19%), Positives = 201/546 (36%), Gaps = 50/546 (9%) Query: 18 FCITILPSFFI----NILYLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFF--- 70 + P+ + IL + P I D + + N LSTIT L Sbjct: 28 LRFRVFPALGLLLGAKILNVQVPFIFKLIIDGL--NDADGNPAVLSTITALLAGYGIARL 85 Query: 71 ---GFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLF------SIISSLDQLKQ 121 F+ +R + + +R + V + S F ++ +D+ + Sbjct: 86 GSSVFNELR---NFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSR 142 Query: 122 FITSPVLPALLDILFTPIFIILSFCI-HPILGSWAILSGILLLTITILFQANNERLERRY 180 I+ + + +I+ T I L I + G+ L + + F R R+ Sbjct: 143 AISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 Query: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240 +K+ + N ++S Y ++ +N + + Y + G+ + Sbjct: 203 RKAMNNADNSASRRAYDSLINYE------IVKSFNNEEYEASRYDGSLKTYERAGLKYSS 256 Query: 241 TLRMT--LQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKS 298 +L Q +I + ++ + IA +T + + ++ L++ L Sbjct: 257 SLAFLNFGQKAIFSVALTFIMVLGSNG---IAAGKMTVGDLVMVNSLLFQ---LSLPLNF 310 Query: 299 LK--------YLINLNDFTTLLNS-SDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQ 349 L L ++ LL D ++ + + L +I ++ F R + + Sbjct: 311 LGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFS-YGPKRKVLK 369 Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 +SFTIP+G I G +G GKS L +L G+I + I +E IG Sbjct: 370 GVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY--CSDEI 467 + Q LF +I NI + S + K G H+ I L +GYQT + Sbjct: 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT 527 Q++ L+R + ILL+DE LD+E + ++ + +T+++I H Sbjct: 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD 547 Query: 528 IISMSD 533 ++ D Sbjct: 548 LLKDFD 553 >gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]. Length = 258 Score = 99.1 bits (247), Expect = 3e-21 Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 31/212 (14%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + +N+ F + I +LSF+IP+G I GP+G GKS L C+ GLL + G + Sbjct: 3 LEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQ-HCSLFPISITENIIL----------SHDQNSLHIAQ 439 + I+ ++ + ++ Y+ Q + F +++ E ++L + I + Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVE 120 Query: 440 KTAKIVGCHE----DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLY 495 + +++G + L G + Q++ ++R +A ILL+DEP Sbjct: 121 EALELLGLEHLADRPVDELSGGER-------------QRVLIARALAQETPILLLDEPTS 167 Query: 496 HLDNEAKNNFYTLLKQF-KENKKTIVIISHDP 526 HLD + LL+ +E T+V++ HD Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDL 199 >gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.. Length = 218 Score = 97.9 bits (244), Expect = 6e-21 Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 19/215 (8%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I KN+ + + +S +I +G I GPSG GKS L + GL G Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 Query: 389 ISFGDRQISR---DFIEKFSA-QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443 + IS+ + F IG++ Q +L P ++ EN+ L L +A K Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKK 115 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDN 499 E L + P + Q++ ++R +AN+P I+L DEP +LD+ Sbjct: 116 --ERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSD 533 E LL++ KE TIV+++HDP + +D Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYAD 208 >gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 226 Score = 97.9 bits (244), Expect = 6e-21 Identities = 51/215 (23%), Positives = 100/215 (46%), Gaps = 18/215 (8%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I KN+ ++ ++++ I G I GPSG GKS L + GL G Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 Query: 389 ISFGDRQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443 + + +++ ++ + +IG++ Q+ +L P +++ EN+ L ++ Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDN 499 E++L + + P + Q++ ++R + NNP I+L DEP +LD+ Sbjct: 122 A----EELLEVLGLEDRLL--KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPTIISMSD 533 + LL++ KE KTI++++HDP + +D Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 >gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 229 Score = 98.0 bits (244), Expect = 6e-21 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 4/211 (1%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ F + + + ++++F+I G I GP+G GK+ + ++ +KG I Sbjct: 3 IEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 I + + IG + Q LF +I ENI L + + AK G H+ Sbjct: 62 IDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDF 121 Query: 451 ILSLKNGYQTTYC--SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 I+ L NGY T + Q + ++R + +P IL++DE ++D E + Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181 Query: 509 LKQFKENKKTIVIISHDPTIISMSDFSLIFH 539 L++ + +T +II+H + I +D L+ Sbjct: 182 LEKLMKG-RTSIIIAHRLSTIKNADKILVLD 211 >gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]. Length = 790 Score = 97.8 bits (243), Expect = 7e-21 Identities = 91/431 (21%), Positives = 162/431 (37%), Gaps = 34/431 (7%) Query: 114 SSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANN 173 +S L +++ + P LLD+ ++ + F I G L +L +TI Sbjct: 326 TSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIW--FGLIVFLMMLLYCYVTIKITEWR 383 Query: 174 ERLERRYKKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAK--K 231 + R+ S + L N E + Y+N + + Y+ I K K Sbjct: 384 TKARRKMNNSWNESRARQVDSLLNFETV----------KYYNAEDYEVERYREAILKYQK 433 Query: 232 YYFGISVTKTLRMTLQSSILGIG--------AWLVIHQKLSAGAIIATSIITARAMAPLE 283 + + +Q+ I+G+G A+ V Q L+ G + + PL Sbjct: 434 QEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLN 493 Query: 284 QIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKE---PISMRLSNNTITAKNIVFRD 340 +S+ K I++ + LL + ++++ I N+ F Sbjct: 494 FFGTYYRSIQ------KNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTF-A 546 Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF 400 + + ++SFT+ G + GPSG GKS + + + G+I+ + I Sbjct: 547 YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 Query: 401 IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 + IG + Q LF +I NI + S AK H+ IL GY T Sbjct: 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 Query: 461 TYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 ++ Q++ ++R I P+I+L+DE LD + L + N+ T Sbjct: 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTT 726 Query: 519 IVIISHDPTII 529 IV+ TI+ Sbjct: 727 IVVAHRLSTIV 737 >gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).. Length = 227 Score = 96.0 bits (239), Expect = 3e-20 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 35/227 (15%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK-----GTISFGDRQI--SRD 399 +++S IP+G + GPSGCGKS L + L L G + + I Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 Query: 400 FIEKFSAQIGYLSQHCSLFPISITENIIL------SHDQNSLH-IAQKTAKIVGCHEDI- 451 + + ++G + Q + FP SI +N+ + L ++ + +++ Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK 134 Query: 452 -----LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 L L G Q Q++ L+R +AN P +LL+DEP LD + Sbjct: 135 DRLHALGLSGGQQ-------------QRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181 Query: 507 TLLKQFKENKKTIVIISHDP-TIISMSDFSLIFHPIQGSLFGLTQDI 552 L+ + K+ + TIVI++H+ ++D + + FG T+ I Sbjct: 182 ELIAELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 >gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 309 Score = 94.2 bits (234), Expect = 8e-20 Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 13/201 (6%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ R + +++ TI EG ++ GPSG GK+ L + L+ G I Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449 IS + +IGY+ Q LFP +++ ENI + + + Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRA----D 115 Query: 450 DILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 ++L L + Y D P+ + Q++ ++R +A +P ILLMDEP LD + Sbjct: 116 ELLDLVGLDPSEYA-DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174 Query: 506 YTLLKQF-KENKKTIVIISHD 525 +K+ KE KTIV ++HD Sbjct: 175 QEEIKELQKELGKTIVFVTHD 195 >gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.. Length = 180 Score = 93.6 bits (233), Expect = 1e-19 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 39/201 (19%) Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 +N+ R + +LS +I G I GP+G GKS L + GLL G I Sbjct: 1 EVENLSVG--YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58 Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451 + ++ ++ + +I Y+ Q L + H+A + Sbjct: 59 DGKDLASLSPKELARKIAYVPQALELLGL--------------AHLADR---------PF 95 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L G + Q++ L+R +A P ILL+DEP HLD + LL++ Sbjct: 96 NELSGGER-------------QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 Query: 512 F-KENKKTIVIISHDPTIISM 531 +E KT+V++ HD + + Sbjct: 143 LARERGKTVVMVLHDLNLAAR 163 >gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 234 Score = 93.3 bits (232), Expect = 2e-19 Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 10/212 (4%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + KN+ FR + +++S IP G + GPSG GKS + + ++ G I Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 Query: 391 FGDRQISRDF-IEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + RD+ + QIG +SQ LF ++ ENI + ++ A+ HE Sbjct: 61 IDGHDV-RDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119 Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYT 507 I+ L GY T + + Q+ R++ R + +P IL++DE LD E++ Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179 Query: 508 LLKQFKENKKTIVI------ISHDPTIISMSD 533 L++ +N+ T VI I + I+ + D Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLED 211 >gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 92.3 bits (229), Expect = 3e-19 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 16/203 (7%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I A+N+ FR + +++S I +G ++ GP+G GKS L + GLL G + Sbjct: 4 IEAENLSFR-YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 Query: 391 FGDRQIS-RDFIEKFSAQIGYLSQ--HCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447 S + + ++G + Q LF ++ + + + L + ++ Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERV--- 119 Query: 448 HEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 + L L + D P+N+ Q++ ++ ++A P ILL+DEP LD + + Sbjct: 120 -AEALELVGLEEL---LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 Query: 504 NFYTLLKQFK-ENKKTIVIISHD 525 LLK+ K E KTI+I++HD Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHD 198 >gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.. Length = 237 Score = 92.3 bits (229), Expect = 4e-19 Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 3/205 (1%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 IT +++ FR K +I N+S I G I G SG GKS + E G + Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 ++ Q+G + Q LF SI +NI L+ S+ + AK+ G H+ Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120 Query: 451 ILSLKNGYQTTYCSDEIPYN--IVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 I L GY T + Q+I ++R + +NP IL+ DE LD E+++ Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180 Query: 509 LKQFKENKKTIVIISHDPTIISMSD 533 + +T++II+H + + +D Sbjct: 181 MHDICAG-RTVIIIAHRLSTVKNAD 204 >gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 157 Score = 91.9 bits (228), Expect = 4e-19 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 55/198 (27%) Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 +N+ FR R N+S T+ G + GP+G GKS L + GLL G I Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58 Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451 + I++ +E+ +IGY+ Q LS Q Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ--------------LSGGQ------------------- 85 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 Q++ L+R + NP +LL+DEP LD ++ LL++ Sbjct: 86 --------------------RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125 Query: 512 FKENKKTIVIISHDPTII 529 E +T++I++HDP + Sbjct: 126 LAEEGRTVIIVTHDPELA 143 >gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]. Length = 338 Score = 91.5 bits (227), Expect = 5e-19 Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 22/213 (10%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 + KN+ L ++++ I +G ++ GPSGCGKS L + GL G I Sbjct: 3 ELELKNVRKSFGSFEVL--KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60 Query: 390 SFGDRQIS------RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442 R ++ R I + Q+ +L+P +++ ENI + + Sbjct: 61 LIDGRDVTDLPPEKRG--------IAMVFQNYALYPHMTVYENIAFG-LKLRGVPKAEID 111 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 K V +L L++ ++ Q++ L+R + P + L+DEPL +LD + + Sbjct: 112 KRVKEVAKLLGLEHLLNR--KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169 Query: 503 NNFYTLLKQFKEN-KKTIVIISHDPT-IISMSD 533 + +K+ E T + ++HD ++++D Sbjct: 170 VLMRSEIKKLHERLGTTTIYVTHDQVEAMTLAD 202 >gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 173 Score = 91.2 bits (227), Expect = 7e-19 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 43/196 (21%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ R K + ++S T+ +G + GP+G GK+ + +LGLL + G I Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + I ++ E+ +IGYL + SL+ +++ EN+ LS Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK---------------- 101 Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 Q++ L++ + ++P +L++DEP LD E++ F+ LL Sbjct: 102 -----------------------QRLALAQALLHDPELLILDEPTSGLDPESRREFWELL 138 Query: 510 KQFKENKKTIVIISHD 525 ++ K+ KTI++ SH Sbjct: 139 RELKKEGKTILLSSHI 154 >gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]. Length = 240 Score = 90.6 bits (225), Expect = 1e-18 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 26/190 (13%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF-IEKFSAQ 407 + +S ++ +G +I GPSG GKS L C+ GL + G+I+ + I K + Sbjct: 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 Query: 408 IGYLSQHCSLFP-ISITENIILS-------HDQNSLHIAQKTAKIVGCHEDI----LSLK 455 +G + Q +LFP +++ EN+ L+ + A + + VG + L Sbjct: 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLS 138 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 G Q Q++ ++R +A +P ++L DEP LD E ++K E Sbjct: 139 GGQQ-------------QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 Query: 516 KKTIVIISHD 525 T++I++H+ Sbjct: 186 GMTMIIVTHE 195 >gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. Length = 345 Score = 90.0 bits (223), Expect = 2e-18 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407 ++S I G + GPSG GKS L + GL T + G I R + + + + Sbjct: 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD--VSNLAVRD 76 Query: 408 --IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 +G++ QH +LFP +++ +NI ++ + + L Q + Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-----ARVEELLRLVQLEGLA 131 Query: 465 DEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519 D P + Q++ L+R +A P +LL+DEP LD + + L++ + T Sbjct: 132 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191 Query: 520 VIISHDP 526 V ++HD Sbjct: 192 VFVTHDQ 198 >gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 223 Score = 90.1 bits (223), Expect = 2e-18 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 15/202 (7%) Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI 389 + K + I N+S ++ G I GPSGCGKS L + L++ GT+ Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60 Query: 390 SFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENII----LSHDQNSLHIAQKTAKIV 445 F +S E + Q+ Y +Q +LF ++ +N+I + + + A Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 + IL+ E+ Q+I L R + P ILL+DE LD K N Sbjct: 121 ALPDSILTKN--------ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 Query: 506 YT-LLKQFKENKKTIVIISHDP 526 + + +E ++ I+HD Sbjct: 173 EEMIHRYVREQNVAVLWITHDK 194 >gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 89.8 bits (223), Expect = 2e-18 Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 8/217 (3%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDF 400 R + + + + G I GPSG GKS L ++GLL + G + I S Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71 Query: 401 IEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459 + + ++G L Q +LF +++ EN+ +++ ++ +IV + + L+ G + Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAE 130 Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-T 518 Y + E+ + +++ L+R +A +P +LL DEP LD A L++ K+ T Sbjct: 131 DLYPA-ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189 Query: 519 IVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFK 554 ++++HD T +++D + + + G +++ Sbjct: 190 SIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 >gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 236 Score = 89.9 bits (223), Expect = 2e-18 Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 7/204 (3%) Query: 336 IVFRDKK----TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 I F + R + +++SFTIP G I GPSG GKS L + + G+I Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 Query: 392 GDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDI 451 + I ++ IG + Q LF +I NI + + AK H+ I Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYTLL 509 + +GY T + + +K R++ R I NP ILL+DE LD + L Sbjct: 121 MRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180 Query: 510 KQFKENKKTIVIISHDPTIISMSD 533 + + +T ++I+H + I +D Sbjct: 181 RDVSKG-RTTIVIAHRLSTIVNAD 203 >gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 263 Score = 89.1 bits (221), Expect = 3e-18 Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 23/223 (10%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 I + + R+I + +P G I G SG GKS L +LGLL Sbjct: 2 SASPEPLIEVRGVTKS--FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 Query: 384 LEKGTIS-FGD--RQISRDFIEKFSAQIGYLSQHCSLF-PISITENI---ILSHDQNSLH 436 +KG I G+ Q+S + + + ++G L Q +LF +++ EN+ + H + Sbjct: 60 PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPES 119 Query: 437 IAQKTA----KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDE 492 + ++ ++VG L E+ + +++ L+R IA +P +L +DE Sbjct: 120 LIRELVLMKLELVGLRGAAADLY--------PSELSGGMRKRVALARAIALDPELLFLDE 171 Query: 493 PLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD-PTIISMSD 533 P LD + L+++ + T+++++HD ++++++D Sbjct: 172 PTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD 214 >gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. Length = 352 Score = 88.8 bits (220), Expect = 3e-18 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++S I +G + GPSGCGK+ L + G G I I+ EK I Sbjct: 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPI 79 Query: 409 GYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK--IVGCHEDILSLKN--GYQTTYC 463 G + Q +LFP +++ EN+ L + +K K I E+ L L G+ Sbjct: 80 GMVFQSYALFPHMTVEENV-----AFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134 Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK-KTIVII 522 ++ Q++ L+R + P +LL+DEPL LD + + LK+ + T V + Sbjct: 135 H-QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV 193 Query: 523 SHDPT-IISMSD 533 +HD ++MSD Sbjct: 194 THDQEEALAMSD 205 >gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.. Length = 228 Score = 87.5 bits (217), Expect = 8e-18 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 22/220 (10%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR 394 ++ F S ++SF+I +G + G SG GKS +LGLL G+I F + Sbjct: 8 SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGK 67 Query: 395 QI---SRDFIEKFSAQIGYLSQH--CSLFPI-SITENI---ILSHDQNSLHIAQKTAKIV 445 + SR + +I + Q SL P +I E I + H + S A+K A Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-- 125 Query: 446 GCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPLYHLDNEA 501 +L L + P+ + Q++ ++R +A NP +L+ DEP LD Sbjct: 126 -----LLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 Query: 502 KNNFYTLLKQFK-ENKKTIVIISHDPTIIS-MSDFSLIFH 539 + LLK+ + E T++ I+HD +++ ++D + + Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY 220 >gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.. Length = 213 Score = 87.1 bits (216), Expect = 1e-17 Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 27/191 (14%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI--SRDFIEKFSA 406 + + T+ +G +I GPSG GKS L C+ L + GTI ++ + I + Sbjct: 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ 76 Query: 407 QIGYLSQHCSLFP-ISITENIILS-------HDQNSLHIAQKTAKIVGCHEDI----LSL 454 ++G + Q +LFP +++ ENI L+ + A + + VG + L Sbjct: 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQL 136 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 G Q Q++ ++R +A NP ++L DEP LD E ++K E Sbjct: 137 SGGQQ-------------QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183 Query: 515 NKKTIVIISHD 525 T+V+++H+ Sbjct: 184 EGMTMVVVTHE 194 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 85.8 bits (212), Expect = 3e-17 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 12/217 (5%) Query: 328 NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 I +N+ + + +SF + G + GP+G GK+ L + GLL G Sbjct: 2 IEVIEVRNLTKKYGGDKTAL-DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVG 446 I + ++ K +IGY+ Q SL+P +++ EN+ L + +I Sbjct: 61 EILVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI-- 117 Query: 447 CHEDILSLKN--GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 E++L L + + Q++ ++ + ++P +L++DEP LD E++ Sbjct: 118 --EELLELFGLEDKANKKVR-TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174 Query: 505 FYTLLKQFK-ENKKTIVIISHDP-TIISMSDFSLIFH 539 + LL++ E TI++ +H + D +I + Sbjct: 175 IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 >gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 242 Score = 84.9 bits (210), Expect = 5e-17 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 12/201 (5%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ R + + NL+ I +G ++ GPSG GK+ + + L+ G I Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449 I + +IGY+ Q LFP +++ ENI L + + + Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERA----D 115 Query: 450 DILSLKN----GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNF 505 ++L+L + Y E+ Q++ ++R +A +P +LLMDEP LD ++ Sbjct: 116 ELLALVGLDPAEFADRY-PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 Query: 506 YTLLKQFKEN-KKTIVIISHD 525 K+ ++ KTIV ++HD Sbjct: 175 QEEFKRLQQELGKTIVFVTHD 195 >gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269 Score = 84.9 bits (210), Expect = 5e-17 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%) Query: 341 KKTSRLI-CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-- 397 KKT + + ++S + EG +I G SG GKS L C+ L+ G + + I+ Sbjct: 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAM 91 Query: 398 --RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHD------QNSLHIAQKTAKIVGCH 448 ++ E +I + Q +L P ++ EN+ + A + ++VG Sbjct: 92 SRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE 151 Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT- 507 G++ Y DE+ + Q++ L+R +A +P ILLMDE LD + Sbjct: 152 --------GWEHKY-PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 Query: 508 LLKQFKENKKTIVIISHDP 526 LL+ E +KTIV I+HD Sbjct: 203 LLRLQAELQKTIVFITHDL 221 >gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]. Length = 386 Score = 85.0 bits (210), Expect = 5e-17 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 13/186 (6%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR----DFIEK 403 + S + EG +I G SG GKS + + L+ +G I + I++ + E Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQT 460 +I + Q +L P ++ EN+ + + A++ + + L L GY Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERA----LEALELVGLEGYAD 159 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTI 519 Y +E+ + Q++ L+R +AN+P ILLMDE LD + L + + KKTI Sbjct: 160 KY-PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTI 218 Query: 520 VIISHD 525 V I+HD Sbjct: 219 VFITHD 224 >gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 214 Score = 84.9 bits (210), Expect = 5e-17 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 12/184 (6%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR--QISRDFIEKFSAQ 407 + F + E I G SG GKS L C+ GL + GTI SR I Q Sbjct: 16 KIDFDLNEEVTGIF-GASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 Query: 408 --IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 IG + Q +LFP +++ EN+ + + + + + L N Y Sbjct: 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSG 134 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523 E Q++ L+R +A P +LL+DEP LD + LKQ K+N ++ ++ Sbjct: 135 GE-----KQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189 Query: 524 HDPT 527 HD + Sbjct: 190 HDLS 193 >gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 253 Score = 84.4 bits (209), Expect = 7e-17 Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 40/229 (17%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTISFGDRQISRDFIE- 402 ++++ IP+ + GPSGCGKS L C+ + L +G + + I ++ Sbjct: 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 Query: 403 -KFSAQIGYLSQHCSLFPISITENIIL------SHDQNSLHIAQKTAKIVG--------C 447 + ++G + Q + FP+SI +N+ D+ I + + K Sbjct: 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRL 143 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 H+ L L G Q Q++ ++R +A P +LLMDEP LD + Sbjct: 144 HKSALGLSGGQQ-------------QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190 Query: 508 LLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSL--FGLTQDIF 553 L+ + K+ TIVI++H+ + +SD++ F+ G L FG T IF Sbjct: 191 LITELKKK-YTIVIVTHNMQQAARVSDYTAFFY--LGELVEFGPTDKIF 236 >gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 232 Score = 83.7 bits (207), Expect = 1e-16 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 16/215 (7%) Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 + +S I EG + GPSGCGK+ L + G T G I + I+ + Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITN--LPPHK 71 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN--GYQTTY 462 + + Q+ +LFP +++ ENI L A+ ++ + L L GY Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERV----AEALDLVQLEGYANRK 127 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521 ++ Q++ ++R + N P +LL+DEPL LD + + + LK+ KE T V Sbjct: 128 -PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 Query: 522 ISHDPT-IISMSDFSLIFHPIQGSL--FGLTQDIF 553 ++HD ++MSD + + +G + G ++I+ Sbjct: 187 VTHDQEEALTMSDRIAVMN--KGKIQQIGTPEEIY 219 >gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.. Length = 205 Score = 83.0 bits (205), Expect = 2e-16 Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 21/206 (10%) Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 +NI F KK + ++ +LS + G + G +G GK+ + GL+ G+I Sbjct: 1 RIENISFSYKKGTEIL-DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 Query: 392 GDRQISRDFIEKFSAQIGYLSQHCS--LFPISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + I E+ + IGY+ Q LF S+ E ++L + Q E Sbjct: 60 NGKPIKAK--ERRKS-IGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA--------E 108 Query: 450 DILSLKNGYQTTYCSDEIPYNIV--QKIRL--SRIIANNPAILLMDEPLYHLDNEAKNNF 505 +L + Y + P ++ QK RL + + + +L+ DEP LD + Sbjct: 109 TVLKDLDLYAL---KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165 Query: 506 YTLLKQFKENKKTIVIISHDPTIISM 531 L+++ K +++I+HD ++ Sbjct: 166 GELIRELAAQGKAVIVITHDYEFLAK 191 >gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 252 Score = 82.6 bits (204), Expect = 3e-16 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 20/237 (8%) Query: 330 TITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 ++ +N+ V+ K + N+S I G I G SG GKS + GL G Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 Query: 388 TISF-GDRQISRDFIEKFSAQIGYLSQH--CSLFPISITENIIL-SHDQNSLHI----AQ 439 +I G + + F + + Q SL P I+ + L Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122 Query: 440 KTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 + VG L + E+ Q+I ++R + P +L++DEP LD Sbjct: 123 ELLDQVGLPPSFLDRR--------PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174 Query: 500 EAKNNFYTLLKQFKENKK-TIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDIFK 554 + LL + K+ + T + ISHD ++ M D + Q G T+++ Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 >gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 223 Score = 82.5 bits (204), Expect = 3e-16 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 15/197 (7%) Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR--- 398 R +++SF IP+G + GPSG GKS L + G +G I +SR Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71 Query: 399 DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKT----AKIVGCHEDILS 453 I QIG + Q L P ++ EN+ L L + K + V D++ Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVAL-----PLRVIGKPPREIRRRVSEVLDLVG 126 Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 LK+ + ++ Q++ ++R I N PA+LL DEP +LD + L ++ Sbjct: 127 LKH--KARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 Query: 514 ENKKTIVIISHDPTIIS 530 T+++ +HD +++ Sbjct: 185 RLGTTVLMATHDLELVN 201 >gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 239 Score = 82.6 bits (204), Expect = 3e-16 Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 ++S IP G + GPSG GK+ L + GL + GTI FG + +++ +G Sbjct: 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE--RNVG 77 Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIP 468 ++ QH +LF +++ +N+ A+I ++L L Q + +D P Sbjct: 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL---VQLDWLADRYP 134 Query: 469 YNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIIS 523 + Q++ L+R +A P +LL+DEP LD + + L++ E T V ++ Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVT 194 Query: 524 HD 525 HD Sbjct: 195 HD 196 >gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 204 Score = 82.1 bits (203), Expect = 4e-16 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 36/221 (16%) Query: 331 ITAKNIVFR---DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 I+ ++ F ++ + ++++ +P+G I GP G GKS+ L +LG L G Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC 447 ++S I Y+SQ + +I ENI+ + ++ K++ Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDE----ERYEKVIKA 103 Query: 448 ---HEDILSLKNGYQTTYCSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHL 497 D+ L +G T EI + Q+I L+R + ++ I L+D+PL + Sbjct: 104 CALEPDLEILPDGDLT-----EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 Query: 498 DNE-AKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537 D ++ F + N KT ++++H ++ +D ++ Sbjct: 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVV 199 >gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 235 Score = 80.6 bits (199), Expect = 1e-15 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 N+S + G +I GP+G GKS L + G + + G I + I+ EK I Sbjct: 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK--RDIS 74 Query: 410 YLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHED--ILSLKNGYQTTYCSDE 466 Y+ Q+ +LFP +++ +NI + + + K++ E I L N T E Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGE 134 Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHD 525 Q++ ++R + NP ILL+DEP LD K LK+ ++ V+ ++HD Sbjct: 135 -----QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 Query: 526 PT-IISMSDFSLIFHPIQGSL--FGLTQDIFK 554 +++D I + G L G +++FK Sbjct: 190 FEEAWALADKVAIM--LNGKLIQVGKPEEVFK 219 >gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 233 Score = 80.2 bits (198), Expect = 1e-15 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 18/205 (8%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I KN+ VF D +++S ++P+G I G SG GKS + C+ GL G+ Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61 Query: 389 ISFGDR---QISRDFIEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKI 444 + +S + K +IG + QH +L ++ EN+ L + + A+ ++ Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121 Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNE 500 ++L L +D P + Q++ ++R +ANNP +LL DE LD E Sbjct: 122 ----LELLELVGLEDK---ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 Query: 501 AKNNFYTLLKQF-KENKKTIVIISH 524 + LL+ +E TIV+I+H Sbjct: 175 TTQSILALLRDINRELGLTIVLITH 199 >gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 182 Score = 80.1 bits (198), Expect = 1e-15 Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 41/197 (20%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407 +++SF + G IAG G G++ + GL G I+ + ++ R + A Sbjct: 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 Query: 408 IGYLS---QHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 I Y+ + L S+ ENI LS +LS N Sbjct: 77 IAYVPEDRKREGLVLDLSVAENIALSS--------------------LLSGGN------- 109 Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 QK+ L+R +A +P +L++DEP +D AK Y L+++ + K +++IS Sbjct: 110 --------QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161 Query: 524 HD-PTIISMSDFSLIFH 539 + ++ + D L+ + Sbjct: 162 SELDELLGLCDRILVMY 178 >gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).. Length = 236 Score = 79.7 bits (197), Expect = 2e-15 Identities = 42/188 (22%), Positives = 89/188 (47%), Gaps = 13/188 (6%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ- 407 ++SF++ G + GP+G GK+ + G L G++ F I+ + + Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76 Query: 408 IGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQKTAKIVGCHE------DILSLKNG 457 IG Q LFP +++ EN+++ + + L +A+ + E + + L + Sbjct: 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 + E+ Y +++ ++R +A +P +LL+DEP L+ E L+++ +E Sbjct: 137 ADRP--AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194 Query: 518 TIVIISHD 525 T++++ HD Sbjct: 195 TVLLVEHD 202 >gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]. Length = 500 Score = 79.0 bits (195), Expect = 3e-15 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407 +++SFT+ G IAG G G++ + G G I + + R + A Sbjct: 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 Query: 408 IGYLS---QHCSLFPI-SITENIILSHDQNSL----------------HIAQKTAKIVGC 447 I Y+ + L SI ENI L+ + +I + K Sbjct: 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP 395 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 + I +L G Q QK+ L+R +A +P +L++DEP +D AK Y Sbjct: 396 EQPIGTLSGGNQ-------------QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR 442 Query: 508 LLKQFKENKKTIVIISHD-PTIISMSDFSLIFH 539 L+++ K I++IS + P ++ +SD L+ Sbjct: 443 LIRELAAEGKAILMISSELPELLGLSDRILVMR 475 Score = 67.9 bits (166), Expect = 7e-12 Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 29/191 (15%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQI 408 +S T+ G + G +G GKS + + G+ + G I + ++ + +A I Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 Query: 409 GYLSQHCSLFP-ISITENIILSH---------DQNSLH-IAQKTAKIVGCHED----ILS 453 + Q SL P +S+ ENI L D+ ++ A++ +G D + Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD 145 Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFK 513 L + Q + ++R ++ + +L++DEP L + + L+++ K Sbjct: 146 LSIAQR-------------QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192 Query: 514 ENKKTIVIISH 524 I+ ISH Sbjct: 193 AQGVAIIYISH 203 >gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]. Length = 539 Score = 79.1 bits (195), Expect = 3e-15 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 39/246 (15%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL----TLEKGTIS 390 + F +++SF + G I G SG GKS L ++GLL + G + Sbjct: 12 TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71 Query: 391 FGDRQIS----RDFIEKFSAQIGYLSQH--CSLFPISITENII----LSHDQNSLHIAQK 440 R + R+ + +I + Q SL P+ + I H + S A+K Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK 131 Query: 441 TA----KIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDE 492 A + VG + D P+ + Q++ ++ +A P +L+ DE Sbjct: 132 RAVELLEQVGLPDPER-----------RDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180 Query: 493 PLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLF--GL 548 P LD + LLK +E ++ I+HD +++ ++D ++ + +G + G Sbjct: 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY--KGEIVETGP 238 Query: 549 TQDIFK 554 T++I Sbjct: 239 TEEILS 244 Score = 77.9 bits (192), Expect = 7e-15 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393 + +F ++ ++SF + EG + G SG GKS + GLL G+I F Sbjct: 293 RKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352 Query: 394 RQISRDFIEKFSA----QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCH 448 + + E Q+ + + SL P +++ + + + + V Sbjct: 353 QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL 412 Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 +++ L + Y E+ Q++ ++R +A P +L++DEP+ LD + L Sbjct: 413 LELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 Query: 509 LKQF-KENKKTIVIISHD-PTIISMSDFSLIFHPIQGSL--FGLTQDIFKF 555 LK +E T + ISHD + ++D + + G + G T+ +F+ Sbjct: 472 LKDLQEELGLTYLFISHDLAVVRYIADRVAVMY--DGRIVEEGPTEKVFEN 520 >gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.. Length = 213 Score = 77.9 bits (192), Expect = 7e-15 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 30/204 (14%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 + +L+ I +G ++ GPSGCGK+ L + GL G I G R ++ + Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD--LPP 69 Query: 404 FSAQIGYLSQHCSLFP-ISITENIIL---SHDQNSLHIAQK---TAKIVGCHEDILS--- 453 I + Q+ +L+P +++ +NI I ++ A+++ E +L Sbjct: 70 KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI-EHLLDRKP 128 Query: 454 --LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L G + Q++ L R I P + LMDEPL +LD + + LK+ Sbjct: 129 KQLSGGQR-------------QRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175 Query: 512 F-KENKKTIVIISHDPT-IISMSD 533 + T + ++HD ++M+D Sbjct: 176 LQQRLGTTTIYVTHDQVEAMTMAD 199 >gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 77.9 bits (192), Expect = 7e-15 Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 32/249 (12%) Query: 331 ITAKNI--VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 I KN+ + ++++ I +G I GPSG GKS L + GL+ G Sbjct: 4 IEVKNLSKTYPGGHQ---ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60 Query: 389 ISFGDRQISR---DFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQN--------SLH 436 I F QI++ + K IG + Q +L P +S+ EN++L L Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120 Query: 437 IAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496 + A+ + E + L YQ + Q++ ++R + P I+L DEP+ Sbjct: 121 SKEDKAQALDALERVGILDKAYQRA---STLSGGQQQRVAIARALVQQPKIILADEPVAS 177 Query: 497 LDNEAKNNFYTLLKQF-KENKKTIVIISHD--------PTIISMSDFSLIFHPIQGSLFG 547 LD E+ +LK +E+ T+++ H II + ++F G Sbjct: 178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF---DGPASE 234 Query: 548 LTQDIFKFN 556 LT + Sbjct: 235 LTDEALDEI 243 >gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.. Length = 214 Score = 77.2 bits (190), Expect = 1e-14 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 15/188 (7%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS---RDFIEKFSA 406 ++ +I G + GPSG GKS L + GTI + +S I Sbjct: 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 +IG + Q L P ++ EN+ + + + ++ K V +++ L + Sbjct: 79 KIGVVFQDFRLLPDRNVYENVAFAL-EVTGVPPREIRKRVPAALELVGLSHK------HR 131 Query: 466 EIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI 521 +P + Q++ ++R I N+P IL+ DEP +LD + LLK+ + T+V+ Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191 Query: 522 ISHDPTII 529 +H ++ Sbjct: 192 ATHAKELV 199 >gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]. Length = 501 Score = 76.3 bits (188), Expect = 2e-14 Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 20/188 (10%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS----RDFIEK 403 ++S ++ +G + G +G GKS + + GL + G I +++ RD I Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI-- 77 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNS---LHIAQKTAKIVGCHEDILSLKNGYQ 459 IG + QH L P +++ ENIIL + + + Q A+I LS + G Sbjct: 78 -RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI-----KELSERYGLP 131 Query: 460 ---TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 +D + Q++ + + + +L++DEP L + + + +L++ Sbjct: 132 VDPDAKVAD-LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190 Query: 517 KTIVIISH 524 KTI+ I+H Sbjct: 191 KTIIFITH 198 Score = 52.8 bits (127), Expect = 2e-07 Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 38/210 (18%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF-GDRQISRDFIEKFSAQ 407 +++SF + G IAG +G G+S + + GL G I G + R + Sbjct: 275 KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 Query: 408 -IGYLS----QHCSLFPISITENIILSHDQNSLH----------IAQKTAKIV------- 445 + Y+ H + +S+ EN++L I + +++ Sbjct: 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 Query: 446 -GCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNN 504 SL G Q QK+ L+R +A P +L+ +P LD A Sbjct: 395 PSPDAPARSLSGGNQ-------------QKLILARELARRPDLLIAAQPTRGLDVGAIEF 441 Query: 505 FYTLLKQFKENKKTIVIISHD-PTIISMSD 533 + L + ++ K +++IS D I+ +SD Sbjct: 442 IHERLLELRDAGKAVLLISEDLDEILELSD 471 >gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]. Length = 530 Score = 76.1 bits (187), Expect = 2e-14 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 41/221 (18%) Query: 320 EPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379 P RL + +N+ RL+ ++LSF I G I GP+G GKS L + Sbjct: 311 PPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369 Query: 380 GLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCS-LFPI-SITENIILSHDQNSLHI 437 G L GT+ G+ + +IGY QH L P ++ E + + Sbjct: 370 GELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEEL---SEGFPDGD 415 Query: 438 AQKTAKIVGC--------HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILL 489 Q+ +G + + L G + ++ L++++ P +LL Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA-------------RLLLAKLLLQPPNLLL 462 Query: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530 +DEP HLD E+ L F+ T++++SHD + Sbjct: 463 LDEPTNHLDIESLEALEEALLDFEG---TVLLVSHDRYFLD 500 Score = 70.3 bits (172), Expect = 1e-12 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 41/208 (19%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R + +N+S T+ G + G +G GKS L + G L + G ++ Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK----------- 64 Query: 405 SAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 ++GYLSQ L P ++ + +I + +A+ + L + Sbjct: 65 GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124 Query: 464 ---SDEIPYNIVQ-----------------------KIRLSRIIANNPAILLMDEPLYHL 497 + + ++ L+R + P +LL+DEP HL Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184 Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHD 525 D E+ LK++ T++++SHD Sbjct: 185 DLESIEWLEDYLKRY---PGTVIVVSHD 209 >gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.. Length = 220 Score = 75.9 bits (187), Expect = 3e-14 Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 10/199 (5%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + +N+ KK ++ +LS + +G + G +G GK+ L + G L GT Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449 I D + +GY Q +LF +++ E++ L ++ ++ Sbjct: 61 INGYSIRTD-RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL-LL 118 Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA--NNPAILLMDEPLYHLDNEAKNNFYT 507 +L L + K +LS IA P++LL+DEP LD ++ + Sbjct: 119 RVLGLT-DKANKRART---LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 Query: 508 LLKQFKENKKTIVIISHDP 526 L+ + ++ ++I++ +H Sbjct: 175 LILEVRKG-RSIILTTHSM 192 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 75.3 bits (185), Expect = 5e-14 Identities = 83/416 (19%), Positives = 155/416 (37%), Gaps = 47/416 (11%) Query: 139 IFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRYKKS---RQDE-INFGKAI 194 I + L +LG + L+G+ ++ + I + + +++K R+DE I I Sbjct: 329 IILALYLLYG-LLG-PSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEI 386 Query: 195 LHNSEYI--YAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILG 252 L+ + I YA + K Q+ L+ K Y + S +L Sbjct: 387 LNGIKVIKLYAWEKP-----FLKKIEDLRQKELKLLRKSAYLSALNSFLNFF---SPVLV 438 Query: 253 IGAWLVIHQKLSAGAIIATSIITA--------RAMAPLEQIINSKKSLNVGLKSLKYLIN 304 V+ L + A++ T+ + L +I+ V LK LK Sbjct: 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLK---- 494 Query: 305 LNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFR-DKKTSRLICQNLSFTIPEGSCCII 363 +F E N I KN F D ++ ++++F I +G + Sbjct: 495 --EFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAV 552 Query: 364 AGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISIT 423 GP G GKS+ L +LG + G++ + + Y+ Q + ++ Sbjct: 553 VGPVGSGKSSLLSAILGEMPKLSGSV-------------AVNGSVAYVPQQPWIQNGTVR 599 Query: 424 ENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RII 481 ENI+ + K K +D+ L G T I + QK R+S R + Sbjct: 600 ENILFGSPYDE-ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV 658 Query: 482 ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537 + I L+D+PL +D + + + KT+++++H + +D ++ Sbjct: 659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV 714 Score = 54.1 bits (130), Expect = 9e-08 Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 13/212 (6%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 S I +++ R + L+ + +SFTI G I G +G GKS+ +L + L+ + Sbjct: 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQ---KTAK 443 G I IS+ + +++ + Q LF ++ N+ D + + + Sbjct: 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNL----DPFDEYSDDEIWEALE 1250 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEA 501 + + SL G + +++ Q+ + L+R + IL++DE +D E Sbjct: 1251 RCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 Query: 502 KNNFY-TLLKQFKENKKTIVIISHD-PTIISM 531 T+ ++FK+ T++ I+H T++ Sbjct: 1311 DALIQKTIREEFKD--CTVLTIAHRLNTVMDS 1340 >gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 316 Score = 74.8 bits (184), Expect = 6e-14 Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 28/242 (11%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL-----TLEKGTI 389 ++ F +SF + +G I G SG GKS ++GLL + G I Sbjct: 8 SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67 Query: 390 SFGDRQI----SRDFIEKFSAQIGYLSQHC--SLFPI-----SITENIILSHDQNSLHIA 438 F + + ++ + +I + Q SL P+ I E + L S A Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNI----VQKIRLSRIIANNPAILLMDEPL 494 ++ A ++L L P+ + Q++ ++ +A NP +L+ DEP Sbjct: 128 KERAI------ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPT 181 Query: 495 YHLDNEAKNNFYTLLKQFKENKKT-IVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDI 552 LD + LLK+ + K T +++I+HD +++ ++D + + + G ++I Sbjct: 182 TALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 Query: 553 FK 554 FK Sbjct: 242 FK 243 >gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 74.5 bits (183), Expect = 8e-14 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 30/193 (15%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R +++S TI G ++ GPSGCGK+ L + G +T +G+I R+ IE Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRR-----IEGP 72 Query: 405 SAQIGYLSQHCSLFP-ISITENIILS------HDQNSLHIAQKTAKIVGC----HEDILS 453 A+ G + Q+ +L P +++ +N+ IA + +VG H+ I Sbjct: 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132 Query: 454 LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLL-KQF 512 L G + Q++ ++R +A P +LL+DEP LD + LL + Sbjct: 133 LSGGMR-------------QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW 179 Query: 513 KENKKTIVIISHD 525 +E K +++I+HD Sbjct: 180 QETGKQVLLITHD 192 >gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 339 Score = 74.1 bits (182), Expect = 9e-14 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 23/210 (10%) Query: 335 NIVFRDKKTSRLIC-QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD 393 + F T + ++S IP+G I G SG GKS L + L G++ Sbjct: 8 SKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDG 67 Query: 394 RQI---SRDFIEKFSAQIGYLSQHCSLF-PISITENIILS---HDQNSLHIAQKTAKIVG 446 + + S + + +IG + QH +L ++ EN+ I Q+ A+++ Sbjct: 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELL- 126 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 +++ L + +D P + Q++ ++R +ANNP ILL DE LD E Sbjct: 127 ---ELVGLSDK------ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 Query: 503 NNFYTLLKQF-KENKKTIVIISHDPTIISM 531 + LLK +E TIV+I+H+ ++ Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKR 207 >gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.. Length = 226 Score = 73.5 bits (180), Expect = 2e-13 Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 3/194 (1%) Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFI 401 + L+ Q++SFT+ G + GPSG GKS + + + G + + IS+ Sbjct: 24 RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83 Query: 402 EKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461 + +++ + Q LF S+ +NI S ++ A+ H I L +GY T Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143 Query: 462 Y--CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519 ++ Q++ ++R + NP +L++DE LD E++ L + E +T+ Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTV 202 Query: 520 VIISHDPTIISMSD 533 ++I+H + + +D Sbjct: 203 LVIAHRLSTVERAD 216 >gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 241 Score = 71.7 bits (176), Expect = 5e-13 Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 22/210 (10%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---SRDFIEKFS 405 +++S +I G + GPSG GKS L C+ GL+ G++ I + + Sbjct: 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLR 77 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN-------G 457 QIG + Q +L +S+ EN +LS + + E +L Sbjct: 78 RQIGMIFQQFNLIERLSVLEN-VLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD 136 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 D++ Q++ ++R + P ++L DEP+ LD + LLK+ + Sbjct: 137 KAYQRA-DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 Query: 518 TIVIIS-HD--------PTIISMSDFSLIF 538 VI+S H I+ + D ++F Sbjct: 196 ITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 >gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 213 Score = 70.8 bits (173), Expect = 1e-12 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 17/202 (8%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE---KG 387 + KN+ R + N++FTI +G + GPSGCGKS L M+G L + G Sbjct: 3 LCLKNVSLR--LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60 Query: 388 TISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVG 446 + ++++ D + QIG L Q LFP +S+ +N++ + A++ A Sbjct: 61 ELWLNEQRL--DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAA--- 115 Query: 447 CHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNN 504 L ++G + D + Q+ R++ R + P LL+DEP LD ++ Sbjct: 116 --NAALE-RSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172 Query: 505 FYTLL-KQFKENKKTIVIISHD 525 F + + + V ++HD Sbjct: 173 FRQWVFSEVRAAGIPTVQVTHD 194 >gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 245 Score = 70.3 bits (172), Expect = 1e-12 Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 12/197 (6%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ 407 +++SF EG + G +G GK+ L + LL + G ++ RD + Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRK 76 Query: 408 IGYLSQHCSLFP-ISITENIILS---HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 IG L L+ ++ EN+ + + I + A++ L L Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS----KRLQLLEYLDRRV- 131 Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 E + QK+ ++R + ++P+IL++DEP LD + F+ +KQ K + ++ S Sbjct: 132 -GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190 Query: 524 HD-PTIISMSDFSLIFH 539 H + ++ D ++ H Sbjct: 191 HIMQEVEALCDRVIVLH 207 >gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 69.8 bits (171), Expect = 2e-12 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 32/205 (15%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + +N+ R K L +S T+ G ++ GP+G GK+ + + L GTI Sbjct: 1 LQLENLTKRYGKKRAL--DGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR 57 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH--------DQNSLHIAQKTA 442 + + + +K +IGYL Q ++P + T L + + + Sbjct: 58 IDGQDVLKQ-PQKLRRRIGYLPQEFGVYP-NFTVREFLDYIAWLKGIPSKEVKARVDEVL 115 Query: 443 KIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 ++V + I SL G + +++ +++ + +P+IL++DEP LD Sbjct: 116 ELVNLGDRAKKKIGSLSGG-------------MRRRVGIAQALVGDPSILIVDEPTAGLD 162 Query: 499 NEAKNNFYTLLKQFKENKKTIVIIS 523 E + F LL + E++ IVI+S Sbjct: 163 PEERIRFRNLLSELGEDR--IVILS 185 >gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.. Length = 194 Score = 69.0 bits (169), Expect = 3e-12 Identities = 45/220 (20%), Positives = 83/220 (37%), Gaps = 41/220 (18%) Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380 +++ N T+T K+ + K + +N+S G I GPSG GKS L + G Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQ---LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 Query: 381 LLTLE--KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHI 437 T G + R + + F IGY+ Q L P +++ E ++ + L Sbjct: 58 RRTGLGVSGEVLINGRPLDKR---SFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSG 114 Query: 438 AQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHL 497 ++ + + +NP++L +DEP L Sbjct: 115 GERKRVSIALE--------------------------------LVSNPSLLFLDEPTSGL 142 Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537 D+ + +LL++ + +TI+ H P+ F + Sbjct: 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182 >gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]. Length = 497 Score = 69.1 bits (169), Expect = 3e-12 Identities = 92/427 (21%), Positives = 166/427 (38%), Gaps = 25/427 (5%) Query: 115 SLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNE 174 ++ + ++I +LP L++I + + + L + + LL T+ + + Sbjct: 51 GIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVS----DW 106 Query: 175 RLERRYKKSRQDEINFGKAI--LHNSEYIYAPSTRDFLLTYWNK-----KRATSQEYQSL 227 R + R + D KAI L N E + ++ ++ ++A + + SL Sbjct: 107 RTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166 Query: 228 IAKKYYFG--ISVTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQI 285 + + S + MT+ A V +L+ G ++ + + + PL + Sbjct: 167 LVLNFGQTAIFSTGLRVMMTM-------SALGVEEGQLTVGDLVNVNALLFQLSIPLNFL 219 Query: 286 INSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSR 345 S + + L ++ + +L D SD+ P + + N+ F R Sbjct: 220 GFSYREIRQALTDMEKMFDLLD--VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP-RR 276 Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 I +SFTIP G I G SG GKS L + + G+I+ + I + Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336 Query: 406 AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 IG + Q LF +I NI + A+ H+ I SL GY T Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGER 396 Query: 466 --EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 ++ Q++ ++R I NP IL++DE LD + L++ + T+VI Sbjct: 397 GLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456 Query: 524 HDPTIIS 530 TII Sbjct: 457 RLSTIID 463 >gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 250 Score = 68.6 bits (168), Expect = 4e-12 Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 16/191 (8%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-DFIEKFSAQ 407 ++S + G + GP+G GK+ + G GT+ F R I+ Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 Query: 408 IGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE-----------DILSLK 455 I Q LFP +++ EN+ + E + + L Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG 140 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 + + Y +++ ++R +A P +LL+DEP L+ E L+++ ++ Sbjct: 141 ELADRP--AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198 Query: 516 -KKTIVIISHD 525 TI++I HD Sbjct: 199 GGVTILLIEHD 209 >gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 228 Score = 68.8 bits (168), Expect = 4e-12 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 33/200 (16%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR---DFIEK 403 I + + + G I GPSG GKS L + GL G + + + + D Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 Query: 404 FSAQ-IGYLSQHCSLFP-ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL--- 452 A+ +G++ Q L P ++ EN+ L +S A+ + VG + + Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP 144 Query: 453 -SLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L G Q Q++ L+R A P +L DEP +LD + LL Sbjct: 145 AQLSGGEQ-------------QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL-- 189 Query: 512 FKENKK---TIVIISHDPTI 528 F N++ T+V+++HDP + Sbjct: 190 FALNRERGTTLVLVTHDPQL 209 >gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 352 Score = 68.4 bits (167), Expect = 5e-12 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 15/185 (8%) Query: 348 CQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI----SRDFIEK 403 + +FT+P + GPSG GK++ + + GL ++G I R + F+ Sbjct: 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP 73 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 +IGY+ Q LFP ++ N+ ++ + ++G I L + Y T Sbjct: 74 EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPGTL 129 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ-FKENKKTIVI 521 E Q++ + R + P +LLMDEPL LD K L++ E I+ Sbjct: 130 SGGE-----KQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184 Query: 522 ISHDP 526 +SH Sbjct: 185 VSHSL 189 >gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]. Length = 243 Score = 67.9 bits (166), Expect = 6e-12 Identities = 52/205 (25%), Positives = 101/205 (49%), Gaps = 13/205 (6%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 +T+ A+N+ KK R + ++S + G + GP+G GK+ ++GL+ + Sbjct: 1 DMSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58 Query: 387 GTISFGDRQISRDFIEKFS-AQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKI 444 G I D I++ + K + IGYL Q S+F +++ +NI+ L I +K K Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV-----LEIREKDLKK 113 Query: 445 VGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNE 500 E++ +L + T+ D Y++ +++ ++R +A NP +L+DEP +D Sbjct: 114 AERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 Query: 501 AKNNFYTLLKQFKENKKTIVIISHD 525 A + ++K K+ ++I H+ Sbjct: 174 AVIDIQRIIKHLKDRGIGVLITDHN 198 >gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.. Length = 178 Score = 67.9 bits (166), Expect = 6e-12 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 39/194 (20%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 ++ N+ F + + + +NLS + +G + G SG GKS L + G L ++G I+ Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 +S D + S+ I L+Q LF ++ N+ Sbjct: 61 LDGVPVS-DLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 G + Q++ L+RI+ + I+L+DEP LD + +L+ Sbjct: 96 GRRFSGGER-------------QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF 142 Query: 511 QFKENKKTIVIISH 524 + ++ KT++ I+H Sbjct: 143 EVLKD-KTLIWITH 155 >gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.. Length = 218 Score = 67.2 bits (164), Expect = 1e-11 Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 9/198 (4%) Query: 331 ITAKNIV--FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT 388 ITA + FRD K + +SFT+ G + GP+G GK+ L + GLL + G Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61 Query: 389 ISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGC 447 + + ++ E ++G++S L+ ++ EN+ L + TA++ Sbjct: 62 ATVDGFDVVKEPAEA-RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL--- 117 Query: 448 HEDILS-LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 E++ L + QK+ ++R + ++P +LL+DEP LD A Sbjct: 118 -EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176 Query: 507 TLLKQFKENKKTIVIISH 524 ++Q + K I+ +H Sbjct: 177 EFIRQLRALGKCILFSTH 194 >gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 259 Score = 66.8 bits (163), Expect = 1e-11 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 34/220 (15%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I A+N+ + R + +S + G I GP+G GKS L + G L+ + G ++ Sbjct: 2 IRAENLSYS--LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSL-FPISITENIIL---SHDQNSL-----HIAQKT 441 ++ E+ + L Q+ SL FP ++ E + + H IA + Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119 Query: 442 AKIVGC----HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIAN------NPAILLMD 491 D +L G Q Q+++L+R++A + L +D Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQ-------------QRVQLARVLAQLWPPVPSGRWLFLD 166 Query: 492 EPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISM 531 EP LD +++ L +Q ++ + HD + + Sbjct: 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ 206 >gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.. Length = 221 Score = 66.6 bits (163), Expect = 2e-11 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 7/203 (3%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I KN+ R + + +N+SF+I G I G +G GKS+ LL + L+ L G+I Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 IS+ + ++I + Q LF +I N+ + S + + VG E Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLD-PFGEYSDEELWQALERVGLKEF 121 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQK--IRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 + SL G T ++ Q+ + L+R + IL++DE +D E Sbjct: 122 VESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181 Query: 509 LKQ-FKENKKTIVIISHD-PTII 529 +++ FK+ T++ I+H TII Sbjct: 182 IREAFKD--CTVLTIAHRLDTII 202 >gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]. Length = 604 Score = 65.3 bits (159), Expect = 4e-11 Identities = 54/292 (18%), Positives = 105/292 (35%), Gaps = 33/292 (11%) Query: 251 LGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKK---SLNVGLKSLKYLINLND 307 + I A +++ G ++ + + L I++ L L + Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367 Query: 308 FTTLLNSSDSKKEPISMRLS--NNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAG 365 + ++ ++ IT +N+ R L+ L+F + G +I G Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLL-SELNFEVRPGERLLITG 426 Query: 366 PSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITEN 425 SG GK++ L + GL G IS + + +L Q L ++ E Sbjct: 427 ESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 Query: 426 IILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV------QKIRLSR 479 + + A+ A + G +E ++ V Q++ +R Sbjct: 476 LCYPNAAPDFSDAELVAVLHKVGL-------GDLAERLDEEDRWDRVLSGGEQQRLAFAR 528 Query: 480 IIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVI-ISHDPTIIS 530 ++ + P + +DE LD E ++ Y LLK+ E VI + H PT+ + Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKE--ELPDATVISVGHRPTLWN 578 >gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.. Length = 232 Score = 64.8 bits (158), Expect = 6e-11 Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 11/198 (5%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 + A+N+ R K R + +S ++ +G + GP+G GK+ ++GL+ + G I Sbjct: 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58 Query: 391 FGDRQISRDFI-EKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCH 448 + I++ + ++ IGYL Q S+F +++ ENI+ + L ++ K+ Sbjct: 59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELL 118 Query: 449 ED--ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 E+ I L+ ++ E +++ ++R +A NP LL+DEP +D A + Sbjct: 119 EEFHITHLRKSKASSLSGGE-----RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173 Query: 507 TLLKQFKENKKTIVIISH 524 ++K K+ ++I H Sbjct: 174 KIIKILKDRGIGVLITDH 191 >gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.. Length = 144 Score = 64.7 bits (158), Expect = 6e-11 Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 69/200 (34%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ +L+ +++S TI G + G +G GKS L + G L ++G ++ Sbjct: 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 +G +IGY Q Sbjct: 59 WGST-----------VKIGYFEQ------------------------------------- 70 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 L G + ++ L++++ NP +LL+DEP HLD E+ LK Sbjct: 71 ---LSGGEKM-------------RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114 Query: 511 QFKENKKTIVIISHDPTIIS 530 ++ T++++SHD + Sbjct: 115 EY---PGTVILVSHDRYFLD 131 >gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.. Length = 226 Score = 63.7 bits (155), Expect = 1e-10 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 20/201 (9%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFL---LCMLGLLTLEKGTISFGDR 394 ++ I ++S + G I G SG GK+ L + G I F + Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72 Query: 395 QISRDFIEKFSAQIGYLSQHCSLFP-ISITE-----NIILSHDQNSLHIAQKTAKIVGCH 448 D +F + Y+ Q L P +++ E I+ ++S I +K + V Sbjct: 73 PRKPD---QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129 Query: 449 EDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFY 506 + L+ G S ++ R+S + +P +L++DEP LD+ N Sbjct: 130 DLALTRIGGNLVKGIS------GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183 Query: 507 TLLKQFKENKKTIVIISHDPT 527 + L Q + +++ H P Sbjct: 184 STLSQLARRNRIVILTIHQPR 204 >gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]. Length = 256 Score = 63.4 bits (154), Expect = 2e-10 Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 40/205 (19%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI---------- 396 + + +S G I G SG GKS FL C+ L G+I +I Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80 Query: 397 ---SRDFIEKFSAQIGYLSQHCSLFP-ISITENII--------LSHDQNSLHIAQKTAKI 444 + +++ ++G + QH +L+ +++ EN+I +S + ++ A+K Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAE-AIERAEKYLAK 139 Query: 445 VGCHEDILS----LKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNE 500 VG E + L G Q Q++ ++R +A P ++L DEP LD E Sbjct: 140 VGIAEKADAYPAHLSGGQQ-------------QRVAIARALAMEPEVMLFDEPTSALDPE 186 Query: 501 AKNNFYTLLKQFKENKKTIVIISHD 525 +++ E +T+V+++H+ Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHE 211 >gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.. Length = 218 Score = 63.2 bits (153), Expect = 2e-10 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 13/195 (6%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ-- 407 N++ IP G +I G GCGKS+ LL +LG + +G + + ++ S E ++ Sbjct: 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78 Query: 408 --IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGC--HEDILSLKNGYQTTYC 463 + Y +Q L ++ ENI N + A C DI L G QT Sbjct: 79 YSVAYAAQKPWLLNATVEENITFGSPFNK---QRYKAVTDACSLQPDIDLLPFGDQTEIG 135 Query: 464 SDEIPYNIVQKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNFYT--LLKQFKENKKTI 519 I + Q+ R+ R + N I+ +D+P LD ++ +LK +++K+T+ Sbjct: 136 ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL 195 Query: 520 VIISHDPTIISMSDF 534 V+++H + +D+ Sbjct: 196 VLVTHKLQYLPHADW 210 >gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 209 Score = 62.6 bits (152), Expect = 3e-10 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 24/191 (12%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 R + +LSFT+ G I GP+G GK+ L + GLL + G + + I E + Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRESY 73 Query: 405 SAQIGYLSQHCSLFP-ISITENIIL------SHDQNSLHIAQKTAKIVGCHEDIL--SLK 455 + YL + ++ EN+ S + ++ A + G ED+ L Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLS 132 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 G Q +++ L+R+ + + ++DEP LD E L+ Sbjct: 133 AGQQ-------------RRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179 Query: 516 KKTIVIISHDP 526 +++ +H P Sbjct: 180 GGIVLLTTHQP 190 >gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222 Score = 62.4 bits (152), Expect = 4e-10 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 24/190 (12%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-DFIEKFS 405 I +S T+PEG + G +G GK+ L ++GLL G+I F R I+ E+ Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 Query: 406 AQIGYLSQHCSLFP-ISITENIIL-SHDQNSLHIAQKTAKIVG--------CHEDILSLK 455 A IGY+ + +FP +++ EN++L ++ + + ++ + +L Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLS 134 Query: 456 NGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 G Q Q + ++R + + P +LL+DEP L + + +++ ++ Sbjct: 135 GGEQ-------------QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181 Query: 516 KKTIVIISHD 525 TI+++ + Sbjct: 182 GVTILLVEQN 191 >gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).. Length = 166 Score = 61.3 bits (149), Expect = 6e-10 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 47/198 (23%) Query: 343 TSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIE 402 R++ ++LSF I G +I GPSG GKS+ + GL G I + Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------- 63 Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 + +L Q L ++ E +I D D+LS G Q Sbjct: 64 ---EDLLFLPQRPYLPLGTLREQLIYPWD------------------DVLSG--GEQ--- 97 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVII 522 Q++ +R++ + P + +DE LD E+++ Y LLK+ T++ + Sbjct: 98 ----------QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISV 144 Query: 523 SHDPTIISMSDFSLIFHP 540 H P++ D L Sbjct: 145 GHRPSLWKFHDRVLDLDG 162 >gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]. Length = 237 Score = 61.3 bits (149), Expect = 6e-10 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 19/156 (12%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK-FS 405 + +S + G + G +G GK+ L ++GL+ G I F I+ + Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSL-------KNG 457 I Y+ + +FP +++ EN++L + + E++ L +N Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLL-----GAYARRDKEAQERDLEEVYELFPRLKERRNQ 132 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEP 493 T E Q + ++R + + P +LL+DEP Sbjct: 133 RAGTLSGGE-----QQMLAIARALMSRPKLLLLDEP 163 >gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 210 Score = 61.0 bits (148), Expect = 8e-10 Identities = 36/193 (18%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++SF++ +G + GP+G GK+ + +LG++ + G + F + + + Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI---- 72 Query: 409 GYLSQHCSLFP-ISITENII-------LSHDQ---------NSLHIAQKTAKIVGCHEDI 451 GYL + L+P + + + ++ L ++ L +++ K V + Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV----EE 128 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 LS N QK++ + ++P +L++DEP LD ++++ Sbjct: 129 LSKGNQ---------------QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173 Query: 512 FKENKKTIVIISH 524 KT+++ +H Sbjct: 174 LARAGKTVILSTH 186 >gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]. Length = 242 Score = 60.0 bits (145), Expect = 1e-09 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 17/187 (9%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI------SRDFIEK 403 +++ PEG ++ GPSG GKS+ L + L GT++ S I Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 +G + Q +L+P +++ EN+I + L +++ A L + Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQAL-----ARAEKLLKRLRLKP 133 Query: 463 CSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 +D P ++ Q++ ++R + P +LL DEP LD E +++K+ E T Sbjct: 134 YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193 Query: 519 IVIISHD 525 VI++H+ Sbjct: 194 QVIVTHE 200 >gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]. Length = 613 Score = 60.0 bits (145), Expect = 2e-09 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 16/227 (7%) Query: 310 TLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGC 369 L S EP+ + N T+++K K ++ I + +S T G I GPSG Sbjct: 12 VLSFSELPYLEPVKLSFRNLTLSSKEK----SKKTKTILKGVSGTAKPGELLAIMGPSGS 67 Query: 370 GKSNFLLCMLGLLTLE---KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITEN 425 GK+ L + G L G I R K S GY+ Q L P +++ E Sbjct: 68 GKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKIS---GYVQQDDVLLPTLTVRET 124 Query: 426 IILS-----HDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480 + S S ++ + V + + + +++ ++ Sbjct: 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPT 527 + +P+IL +DEP LD+ + LLK+ + +T++ H P+ Sbjct: 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 >gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]. Length = 231 Score = 59.9 bits (145), Expect = 2e-09 Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 25/199 (12%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 T+P G I GPSG GKS L + G T G I + + Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA--SPPAERPVSM 75 Query: 411 LSQHCSLFP-ISITENIIL---------SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 L Q +LF +++ +NI L + + + A + G + + +G Q Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519 Q++ L+R + ILL+DEP LD + L+ Q + +K T+ Sbjct: 136 ------------QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183 Query: 520 VIISHDPTIISMSDFSLIF 538 ++++H P + ++F Sbjct: 184 LMVTHHPEDAARIADRVVF 202 >gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.. Length = 208 Score = 59.8 bits (145), Expect = 2e-09 Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 14/184 (7%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 + + ++S + +G GP+G GK+ + +LGL+ + G I+F + ++ + Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IE 69 Query: 404 FSAQIGYLSQHCSLFP-ISITENIILSHDQNSL--HIAQKTAKIVGCHEDILSLKNGYQT 460 +IG L + +P ++ EN+ L + + +VG + G+ Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSL 129 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520 + Q++ ++ + NP +L++DEP LD + L+ ++ T++ Sbjct: 130 ---------GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180 Query: 521 IISH 524 I SH Sbjct: 181 ISSH 184 >gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]. Length = 257 Score = 59.9 bits (145), Expect = 2e-09 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 38/247 (15%) Query: 299 LKYLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEG 358 L + + K+ PI + I KN+ R + I +LS+ + G Sbjct: 2 LAHSESSRGVELPEPKEPKKRHPIEINEP--LIELKNVSVRRNG--KKILGDLSWQVNPG 57 Query: 359 SCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI-SFGDRQISRDFIEKFSAQIGYLS--QHC 415 I GP+G GK+ L + G G + G R + I + +IG +S H Sbjct: 58 EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHE 117 Query: 416 SLFPISITENIILS------------HDQNSLHIAQKTAKIVGCHE----DILSLKNGYQ 459 +++LS L AQ +++G SL G Q Sbjct: 118 RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQ 177 Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF--KENKK 517 +++ ++R + +P +L++DEP LD A+ L++ Sbjct: 178 -------------RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAP 224 Query: 518 TIVIISH 524 ++ ++H Sbjct: 225 ALLFVTH 231 >gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism, General function prediction only]. Length = 659 Score = 59.9 bits (145), Expect = 2e-09 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 20/232 (8%) Query: 314 SSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSN 373 ++N I + + L+ +NLS +P G +I GPSGCGK++ Sbjct: 417 GLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTS 476 Query: 374 FLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQ-----IGYLSQHCSLFPISITENII- 427 L + GL G ++ +D F Q +G L ++P+ + Sbjct: 477 LLRVLGGLWPSTGGKLTKPTDGGPKDLF--FLPQRPYMTLGTLRDQV-IYPLKAEDMDSK 533 Query: 428 LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC---SDEIPYNIVQKIRLSRIIANN 484 + D++ L I + +L + G D + Q++ +R+ + Sbjct: 534 SASDEDILRILENV-----QLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSL 536 P ++DE + + + Y ++ T + + H ++ D+ L Sbjct: 589 PKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKFHDYVL 637 >gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]. Length = 268 Score = 59.5 bits (144), Expect = 2e-09 Identities = 54/212 (25%), Positives = 82/212 (38%), Gaps = 40/212 (18%) Query: 324 MRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 + + N KK +SF+I EG + G SGCGKS +LGL Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443 G I F + I++ E+ ++ L + L E + + Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGL-----PEEFLYRYP------------ 107 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 HE LS G Q Q+I ++R +A NP +++ DEP+ LD + Sbjct: 108 ----HE--LS---GGQR------------QRIGIARALALNPKLIVADEPVSALDVSVQA 146 Query: 504 NFYTLLKQFKENKK-TIVIISHD-PTIISMSD 533 LLK +E T + ISHD + +SD Sbjct: 147 QILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 >gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 211 Score = 58.0 bits (140), Expect = 7e-09 Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 27/212 (12%) Query: 340 DKKTSRLICQNLSF--TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397 DK Q + F T +G I GPSG GKS L + G T + G + ++ Sbjct: 4 DKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT 63 Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENIIL---------SHDQNSLHIAQKTAKIVGC 447 + L Q +LF +++ +N+ L + D+ ++ +A VG Sbjct: 64 --AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA---LARVGL 118 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 L E+ Q++ L+R++ + +LL+DEP LD + Sbjct: 119 AGLEKRL---------PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD 169 Query: 508 LLKQF-KENKKTIVIISHDPTIISMSDFSLIF 538 L+ E K T+++++H P ++F Sbjct: 170 LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201 >gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 300 Score = 58.0 bits (140), Expect = 7e-09 Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 33/227 (14%) Query: 338 FRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS 397 F DKK N+SF +P G + GP+G GK+ +LGLL +G I++ +S Sbjct: 12 FGDKKAVD----NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS 67 Query: 398 RDFIEKFSAQIGYLSQHCSLFP-ISITENII---------LSHDQNSLHIAQKTAKIVGC 447 + + +IGYL + L+P +++ + + + Q L + +IVG Sbjct: 68 Q----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK 123 Query: 448 -HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY 506 + I L G Q QKI+ + + P +L++DEP LD Sbjct: 124 KTKKIKELSKGNQ-------------QKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170 Query: 507 TLLKQFKENKKTIVIISHDPTIIS-MSDFSLIFHPIQGSLFGLTQDI 552 + + KE TI+ SH + + D L+ Q L+G +DI Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 >gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]. Length = 546 Score = 56.5 bits (136), Expect = 2e-08 Identities = 81/420 (19%), Positives = 144/420 (34%), Gaps = 47/420 (11%) Query: 135 LFTPIFIILSFCIHPILGSWAILSG-ILLLT---ITILFQANNERLERRYK---KSRQDE 187 P + A LS + LLT I + + R YK +R+ E Sbjct: 123 SRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETE 182 Query: 188 ---INFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRM 244 N + IL + + R + + N +QEY+ I + F + + Sbjct: 183 DKLQNDYQTILEGRKELTLNRERAEYV-HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNI 241 Query: 245 TLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMA-PLEQIINSKKSLNVGLKSLKYL- 302 L I G+ WL + ++ + AT ++ + PL + +L + + Sbjct: 242 MLLGLI-GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIA 300 Query: 303 -INLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCC 361 + L + + + ++ L N ++ F ++ TI G Sbjct: 301 KLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAFH--------VGPINLTIKRGELV 352 Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPIS 421 + G +G GKS + + GL + G I + +S + +E + + LF Sbjct: 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL 412 Query: 422 ITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRII 481 + S + + SL +G + + + QK RL+ ++ Sbjct: 413 LGPEGKASPQLIEKWLQRLELA------HKTSLNDGRFSN-----LKLSTGQKKRLALLL 461 Query: 482 ANNPAILLMDEPLYHLDNEAKNN-------FY-TLLKQFKENKKTIVIISHDPTIISMSD 533 A LL + + LD A + FY LL KE KTI ISHD +D Sbjct: 462 A-----LLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHAD 516 >gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.. Length = 224 Score = 56.3 bits (136), Expect = 2e-08 Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 30/221 (13%) Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376 SK P S++ + + + +++SF +P G + G +G GKS L Sbjct: 7 SKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLR 66 Query: 377 CMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLH 436 + G+ + GT++ ++S G+ + ++ ENI L+ L Sbjct: 67 LLAGIYPPDSGTVT-VRGRVS----SLLGLGGGFNPE------LTGRENIYLNGRLLGLS 115 Query: 437 IAQKTAKIVGCHEDILS---LKNGYQT---TYCSDEIPYNIVQKIRL--SRIIANNPAIL 488 + KI ++I+ L + TY S K RL + A P IL Sbjct: 116 RKEIDEKI----DEIIEFSELGDFIDLPVKTYSSG-------MKARLAFAIATALEPDIL 164 Query: 489 LMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 L+DE L D + L++ + KT++++SHDP+ I Sbjct: 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205 >gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 282 Score = 56.2 bits (135), Expect = 3e-08 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 + +N++ I +G I G +G GK++ L+ +LG L +G I K S Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI-------------KHSG 98 Query: 407 QIGYLSQHCSLFPISITENII--LSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 +I + SQ + P +I ENII +S+D+ K ++ EDI T Sbjct: 99 RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL---EEDITKFPEKDNTVLGE 155 Query: 465 DEIPYNIVQKIR--LSRIIANNPAILLMDEPLYHLD-NEAKNNFYTLLKQFKENKKTIVI 521 I + Q+ R L+R + + + L+D P +LD K F + + + NK I++ Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215 Query: 522 ISHDPTIISMSDFSLIFHPIQGSLF 546 S + +D LI H +GS + Sbjct: 216 TSKMEH-LKKADKILILH--EGSSY 237 >gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.. Length = 236 Score = 56.0 bits (135), Expect = 3e-08 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 24/205 (11%) Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 + K++ R + + + +SFTI +G GP+G GK+ L + GLL G + Sbjct: 22 SLKSLFKRKYREVEAL-KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 Query: 392 GDRQISRDFIEKFSAQIGY-LSQHCSL-FPISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + KF +IG Q L + + + ++ L L A+ ++ Sbjct: 81 AGLVPWKRRK-KFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDEL-S 138 Query: 450 DILSLKNGYQTTYCSDEIPYNIVQKIRL-----SRIIAN---NPAILLMDEPLYHLDNEA 501 ++L L +E+ V+++ L + I A P IL +DEP LD A Sbjct: 139 ELLDL----------EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 Query: 502 KNNFYTLLKQF-KENKKTIVIISHD 525 + N LK++ +E T+++ SH Sbjct: 189 QENIRNFLKEYNRERGTTVLLTSHY 213 >gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]. Length = 534 Score = 56.0 bits (135), Expect = 3e-08 Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 31/223 (13%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-----------R 398 +S T+ G + G SG GKS L +L L+ +G I F + I R Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRPLRR 363 Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNS----LHIAQKTAKIVGCHEDILSL 454 F G LS ++ I I E + + + S + + VG Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQI-IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-- 420 Query: 455 KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-K 513 N Y + + Q+I ++R + P ++L+DEP LD + LL+ + Sbjct: 421 -NRYPHEFSGGQ-----RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ 474 Query: 514 ENKKTIVIISHDPTII-SMSDFSLIFHPIQGSLF--GLTQDIF 553 ++ + + ISHD ++ ++ ++ G + G T+ +F Sbjct: 475 KHGLSYLFISHDLAVVRALCHRVIVMR--DGKIVEQGPTEAVF 515 Score = 50.6 bits (121), Expect = 1e-06 Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 30/217 (13%) Query: 335 NIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE-----KGTI 389 ++ F + + + +SF I G + G SG GKS L +LGLL G+I Sbjct: 13 SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72 Query: 390 SFGDRQI----SRDFIEKFSAQIGYLSQH--CSLFPI-----SITENIILSHDQNSLHIA 438 F + R +IG + Q SL P+ + E + L + A Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSR---A 129 Query: 439 QKTAKIVGCHEDI-LSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEP 493 A+ + E + + Y P+ + Q++ ++ +AN P +L+ DEP Sbjct: 130 AARARALELLELVGIPEPEKRLDAY-----PHELSGGQRQRVMIAMALANEPDLLIADEP 184 Query: 494 LYHLDNEAKNNFYTLLKQFKENKK-TIVIISHDPTII 529 LD + LLK+ + I+ I+HD I+ Sbjct: 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV 221 >gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]. Length = 249 Score = 55.6 bits (134), Expect = 3e-08 Identities = 42/187 (22%), Positives = 86/187 (45%), Gaps = 13/187 (6%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF-GDRQISR-DFIEKFSA 406 +LSF++ G ++ GP+G GK+ + + G ++G + F GD +++ A Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 IG Q ++F +++ EN+ L+ +++ A A++ + T D Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR--RIDELLATIGLGD 139 Query: 466 E-------IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 E + + Q + + ++A +P +LL+DEP+ + + LLK K + Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHS 198 Query: 519 IVIISHD 525 I+++ HD Sbjct: 199 ILVVEHD 205 >gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]. Length = 248 Score = 55.4 bits (133), Expect = 4e-08 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 LS + G + GP+G GKS L M G+ + G+I F + + + + Y Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAY 76 Query: 411 LSQHCS-LFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPY 469 LSQ + F + + + L + +++ L+L D++ Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQP------DKTRTELLNDVAGALAL---------DDKLGR 121 Query: 470 NIV-------QKIRLSRIIAN-----NPA--ILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 + Q++RL+ ++ NPA +LL+DEP+ LD ++ LL + Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ 181 Query: 516 KKTIVIISHD 525 IV+ SHD Sbjct: 182 GLAIVMSSHD 191 >gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.. Length = 163 Score = 55.0 bits (133), Expect = 6e-08 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 54/177 (30%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-RDFIEKFSAQ 407 +S ++ G + G +G GKS + + GL + G I +++S + A Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76 Query: 408 IGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEI 467 I + Q L + ++ Sbjct: 77 IAMVYQ---------------------LSVGER--------------------------- 88 Query: 468 PYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 Q + ++R +A N +L++DEP L + ++++ + ++ ISH Sbjct: 89 -----QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140 >gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily) [General function prediction only]. Length = 614 Score = 55.0 bits (132), Expect = 6e-08 Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 29/205 (14%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ F + +I + L+F I S + GP+G GKS L + G L G +S Sbjct: 390 IMVQNVSFG-YSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS 448 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 ++ +QH L D++SL E+ Sbjct: 449 RHSH-----------NKLPRYNQH---------LAEQLDLDKSSLEFMMPKFPDEKELEE 488 Query: 451 ILSLKNGYQTTYCSDEIPYNIV---QKIRLS--RIIANNPAILLMDEPLYHLDNEAKNNF 505 + S+ + T + +P + + Q+ R+ R+ P +LL+DEP HLD E + Sbjct: 489 MRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDAL 548 Query: 506 YTLLKQFKENKKTIVIISHDPTIIS 530 + +F +V++SHD +IS Sbjct: 549 AEAINEF---PGGVVLVSHDFRLIS 570 Score = 46.5 bits (110), Expect = 2e-05 Identities = 54/268 (20%), Positives = 98/268 (36%), Gaps = 60/268 (22%) Query: 287 NSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEPIS--MRLSNNTITAKNIVFRDKKTS 344 +L L+SL+ + T L S PIS +++ + +++ Sbjct: 42 TEVDALADELESLELIAKARSVTGNLFSH-----PISRDVKIESLSLSFH---------G 87 Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG--DRQISR---- 398 + ++++ + G + GP+G GKS FL + G I F R+I Sbjct: 88 VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQ 147 Query: 399 ------DFIEKFSAQIGY----LSQHCSLFPISITENIILSHDQ-NSLHIAQKTAKIVGC 447 + ++ Y L+Q C + + D+ ++ K AKI+ Sbjct: 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKIL-- 205 Query: 448 HE----------DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHL 497 H + L G++ + L+R + P +LL+DEP HL Sbjct: 206 HGLGFLSEMQDKKVKDLSGGWR-------------MRAALARALFQKPDLLLLDEPTNHL 252 Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHD 525 D EA L ++ + +VI+SH Sbjct: 253 DLEAIVWLEEYLAKYD--RIILVIVSHS 278 >gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism, General function prediction only]. Length = 885 Score = 53.9 bits (129), Expect = 1e-07 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 11/210 (5%) Query: 320 EPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379 E + R S ++ N + + + LSF +P G C + G +G GK+ + Sbjct: 553 ETLLFRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLT 612 Query: 380 GLLTLEKGTISFGDRQISRDFI-EKFSAQIGYLSQHCSLFPI----SITENIILSHDQNS 434 G G I+ ++ Q+GY Q +L+ E Sbjct: 613 GETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR 672 Query: 435 LHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPL 494 I K++ + G +++ + + +P+++L+DEP Sbjct: 673 SDIGSAIEKLLRL------VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPS 726 Query: 495 YHLDNEAKNNFYTLLKQFKENKKTIVIISH 524 LD +A+ + + ++ + ++N K I++ SH Sbjct: 727 TGLDPKARRHLWDIIARLRKNGKAIILTSH 756 >gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 263 Score = 53.3 bits (128), Expect = 2e-07 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 11/202 (5%) Query: 333 AKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFG 392 A F+ + LS I EG + G +G GKS L + G L G I Sbjct: 7 ATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILID 66 Query: 393 DRQISRDFIEKFSAQIGYLSQH--CSLFP-ISITENIILSH---DQNSLHIAQKTAKIVG 446 +++ + K + + + Q P ++I EN+ L+ + L A + Sbjct: 67 GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSS 126 Query: 447 CHEDILSLKNGYQTTYCSDEIPY---NIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 E + L G + SD I Q + L + P ILL+DE LD + Sbjct: 127 FRERLARLGLGLE-NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAE 185 Query: 504 NFYTLLKQFKENKK-TIVIISH 524 L + E K T ++++H Sbjct: 186 FVMELTAKIVEEHKLTTLMVTH 207 >gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 252 Score = 52.9 bits (127), Expect = 2e-07 Identities = 47/199 (23%), Positives = 93/199 (46%), Gaps = 9/199 (4%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 IT +N+ ++++ ++S IP+G I GP+G GKS L M LL + G I+ Sbjct: 2 ITIENV--SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTA---KIVGC 447 +++ ++ + ++ L Q +T ++ + + T +I+ Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENH-INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118 Query: 448 HEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 + L L++ Y DE+ Q+ ++ ++A + +L+DEPL +LD + Sbjct: 119 AIEYLHLED-LSDRYL-DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 Query: 508 LLKQF-KENKKTIVIISHD 525 +L++ E KTIV++ HD Sbjct: 177 ILRRLADELGKTIVVVLHD 195 >gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 220 Score = 52.6 bits (126), Expect = 3e-07 Identities = 40/199 (20%), Positives = 89/199 (44%), Gaps = 12/199 (6%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+V + + + +SF + G + GP+G GK+ + + LL G + Sbjct: 1 IEVENLVKKYGDFEAV--RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHE 449 + R+ E +IG + Q S+ ++ EN+ + + A++ +I + Sbjct: 59 VAGHDVVREPRE-VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD 117 Query: 450 --DILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT 507 +L + TY + +++ ++R + + P +L +DEP LD + + + + Sbjct: 118 FVGLLEAADRLVKTYSG-----GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 Query: 508 LLKQFK-ENKKTIVIISHD 525 +++ K E TI++ +H Sbjct: 173 YIEKLKEEFGMTILLTTHY 191 >gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 235 Score = 52.2 bits (125), Expect = 4e-07 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 23/194 (11%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTI--SFGDRQIS------R 398 + +N+S ++ G C ++ GPSG GKS L + ++G I + R Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85 Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENII---LSHDQNSLHIAQKTAKI----VGCHEDI 451 + +E IGY+SQ + P +++ L +A+ A + E + Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 SL T+ E Q++ ++R + ILL+DEP LD + L+++ Sbjct: 146 WSLA---PATFSGGE-----QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197 Query: 512 FKENKKTIVIISHD 525 K +V I HD Sbjct: 198 AKARGAALVGIFHD 211 >gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.. Length = 201 Score = 51.1 bits (122), Expect = 8e-07 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 21/188 (11%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS--RDFIE 402 R + LSFT+ G + GP+G GK+ L + GL G + + RD I Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIA 72 Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLH-IAQKTAKI-VGCHEDIL--SLKNGY 458 + +G+ + +S+ EN+ H +S + + A++ + ED L G Sbjct: 73 RGLLYLGHAPGIKTT--LSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQ 130 Query: 459 QTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT 518 Q +++ L+R++ + + ++DEP LD F + Sbjct: 131 Q-------------RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 Query: 519 IVIISHDP 526 +V+ +H Sbjct: 178 VVLTTHQD 185 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 49.4 bits (118), Expect = 2e-06 Identities = 52/256 (20%), Positives = 88/256 (34%), Gaps = 37/256 (14%) Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366 F S S K+ + A+ +D +SF I +G I G Sbjct: 12 KFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKD----------ISFEIYKGERVGIIGH 61 Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426 +G GKS L + G+ G + ++ G+ + ++ ENI Sbjct: 62 NGAGKSTLLKLIAGIYKPTSGKVK-----VTGKVAPLIELGAGFDPE------LTGRENI 110 Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDIL------SLKNGYQTTYCSDEIPYNIVQKIRLSRI 480 L L + +I ++I+ + TY S + ++ S Sbjct: 111 YL----RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS-----GMYARLAFSVA 161 Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII-SMSDFSLIFH 539 P ILL+DE L D + L + E KTIV++SHD I D ++ Sbjct: 162 THVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLE 221 Query: 540 PIQGSLFGLTQDIFKF 555 Q + G +++ Sbjct: 222 HGQIRMEGSPEEVIPA 237 >gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.. Length = 207 Score = 48.3 bits (115), Expect = 5e-06 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 18/194 (9%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 I +N+ R + +N+SF + G I G +G GKS +L + L E+G I Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHED 450 IS +E + + + Q +LF +I N+ D + ++ + E Sbjct: 67 IDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL----DPFDEYSDEEIYGALRVSEG 122 Query: 451 ILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 L+L G + C L+R + P +L++DE +D ++ Sbjct: 123 GLNLSQGQRQLLC-------------LARALLKRPRVLVLDEATASIDYATDALIQKTIR 169 Query: 511 QFKENKKTIVIISH 524 + + TI+ I+H Sbjct: 170 E-EFTNSTILTIAH 182 >gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]. Length = 258 Score = 48.0 bits (114), Expect = 6e-06 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 33/233 (14%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDR-QISRDFIE 402 C+++SF + G I G SG GK+ L C+ G LT + GT+++ R RD Sbjct: 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 Query: 403 KFSAQ--------IGYLSQHCSLFPI-----------SITENIILSHDQNSLHIAQKTAK 443 A+ G++ Q+ P +I E ++ ++ +I + Sbjct: 78 MSEAERRRLLRTEWGFVHQN----PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQD 133 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 + E L + T+ + Q+++++R + P ++ MDEP LD + Sbjct: 134 WLEEVEIDLDRIDDLPRTFSG-----GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188 Query: 504 NFYTLLKQF-KENKKTIVIISHDPTIISMSDFSLIFHPIQGSLF--GLTQDIF 553 LL+ +E +VI++HD + + L+ QG + GLT + Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK-QGQVVESGLTDRVL 240 >gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]. Length = 325 Score = 47.6 bits (113), Expect = 1e-05 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 38/227 (16%) Query: 317 SKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLL 376 SK P++++ + N F K+ S Q++SF IP+G G +G GKS L Sbjct: 10 SKNYPVAIK-EPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68 Query: 377 CMLGLLTLEKGTISFG-----DRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHD 431 + GLL G + R+ +++ +G Q P Sbjct: 69 MLTGLLLPTSGKVRVNGKDPFRRR--EEYLRSIGLVMGQKLQLWWDLPA----------- 115 Query: 432 QNSLHIAQKTAKIVGCH--------EDILSLKNG--YQTTYCSDEIPYNIVQKIRLSRII 481 +SL + + +I +IL L+ + S Q++R Sbjct: 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG------QRMRAELAA 169 Query: 482 A--NNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TIVIISHD 525 A + P +L +DEP LD A+ N LK++ E ++ T+++ +H Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216 >gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]. Length = 807 Score = 47.0 bits (111), Expect = 1e-05 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 36/196 (18%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 + L F I S I GP+G GKS L ++G L G + R +I Sbjct: 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR-----------LRI 652 Query: 409 GYLSQHCSLFPISITENIILSHDQNSLHIA-QKTAKIVG-----CHEDILSLKN--GYQT 460 G+ QH + E + + Q ++ Q+ K +G H + +K+ G Q Sbjct: 653 GWFDQHAN--EALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQK 710 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIV 520 ++ L+ + P +L++DEP +LD E+ + L + E ++ Sbjct: 711 A------------RVALAELALGGPDVLILDEPTNNLDIESID---ALAEAINEYNGGVI 755 Query: 521 IISHDPTIISMSDFSL 536 ++SHD +I +D +L Sbjct: 756 MVSHDERLIVETDCNL 771 Score = 38.5 bits (89), Expect = 0.005 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 9/55 (16%) Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAK---NNFYTLLKQFKENKKTIVIISHD 525 ++ L+R + P +L++DEP HLD A +N+ + KKT++I+SHD Sbjct: 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNY------LQGWKKTLLIVSHD 468 >gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism, Translation, ribosomal structure and biogenesis]. Length = 582 Score = 47.2 bits (112), Expect = 1e-05 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 38/248 (15%) Query: 326 LSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385 LS + + F + + L S G +G GKS L + G LT Sbjct: 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT 417 Query: 386 KGTISFGDR-------QISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA 438 +G + R Q DF++K + ++ FP E I S ++ Sbjct: 418 RGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFME---KSFPGKTEEEI--RRHLGSFGLS 472 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRL--SRIIANNPAILLMDEPLYH 496 + A I SL G QK R+ + NNP +L++DEP H Sbjct: 473 GELA----LQS-IASLSGG---------------QKSRVAFAACTWNNPHLLVLDEPTNH 512 Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIFKFN 556 LD ++ LK F +V++SHD IS ++ G + + I K+ Sbjct: 513 LDRDSLGALAKALKNFNGG---VVLVSHDEEFISSL-CKELWVVEDGKVTPIEGGIDKYK 568 Query: 557 TVTHNQIK 564 + +++ Sbjct: 569 KLLGAELR 576 Score = 45.3 bits (107), Expect = 4e-05 Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 49/197 (24%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEK 403 +++ + T+ G + G +G GKS L R I+ + Sbjct: 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLL------------------RAIANGQVSG 133 Query: 404 FSAQIGYLSQHCSLFPISITENIILSHDQNSLH--------IAQKTAKIVGCHEDILSLK 455 F + Q Q+ L +A++ + G + + K Sbjct: 134 FHVE-----QEV--------RGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDK 180 Query: 456 NGYQTTYCSDEIPYNIVQ-------KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTL 508 + + ++ L+R + P +LL+DEP HLD L Sbjct: 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD---VVAVAWL 237 Query: 509 LKQFKENKKTIVIISHD 525 + K T +I+SHD Sbjct: 238 ENYLQTWKITSLIVSHD 254 >gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]. Length = 593 Score = 46.9 bits (111), Expect = 1e-05 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 18/210 (8%) Query: 325 RLSNNTIT-AKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT 383 L N ++ R + R + +NL+ I G + G SG GK+ L +LG Sbjct: 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK 434 Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSH---DQNSLHIAQK 440 D SA I + E IL H L+ A + Sbjct: 435 GRGEEKYRPDSGKVEVPKNTVSALIP------GEYEPEFGEVTILEHLRSKTGDLNAAVE 488 Query: 441 TAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN- 499 G + +L Y+ + E+ ++ +L++++A P +LL+DE HLD Sbjct: 489 ILNRAGLSDAVL-----YRRKF--SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDEL 541 Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529 A + + +E T+++++H P + Sbjct: 542 TAVRVARKISELAREAGITLIVVTHRPEVG 571 >gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Length = 119 Score = 46.5 bits (111), Expect = 2e-05 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 19/129 (14%) Query: 372 SNFLLCMLGLLTLEKGTISFGDRQI-SRDFIEKFSAQIGYLSQHCSLFP-ISITENIILS 429 S L + GLL GTI + +IG + Q LFP +++ EN+ Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLFFG 60 Query: 430 HDQN-SLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANN 484 + A++ + VG + + + Q++ ++R + Sbjct: 61 LRDKEADARAEEALERVGLPDFL------------DRSPVGTLSGGQKQRVAIARALLKK 108 Query: 485 PAILLMDEP 493 P +LL+DEP Sbjct: 109 PKLLLLDEP 117 >gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 192 Score = 46.3 bits (110), Expect = 2e-05 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 39/215 (18%) Query: 328 NNTITAKNIVFR--DKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE 385 + +T KN+ + K R + N+S + G+ + G SG GK+ L + G T Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA- 59 Query: 386 KGTISFGDRQIS-RDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAK 443 G I+ G+ I+ R + F GY+ Q P +++ E + S L + Q+ Sbjct: 60 -GVIT-GEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRL 117 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 +G +A P+IL +DEP LD++A Sbjct: 118 TIGVE--------------------------------LAAKPSILFLDEPTSGLDSQAAY 145 Query: 504 NFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIF 538 N LK+ ++ + I+ H P+ F + Sbjct: 146 NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL 180 >gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176 Score = 46.4 bits (110), Expect = 2e-05 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 58/204 (28%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCML---GLLTLEKGTISFGDRQISRDFIEKFS 405 QNL +IP ++ G SG GKS + L G L F ++ FI++ Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLI--FIDQLQ 69 Query: 406 AQI----GYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTT 461 I GYL+ L +S E Sbjct: 70 FLIDVGLGYLTLGQKLSTLSGGE------------------------------------- 92 Query: 462 YCSDEIPYNIVQKIRLSRIIANNP--AILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTI 519 +Q+++L+ + + P + ++DEP L + N ++K + T+ Sbjct: 93 ----------LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142 Query: 520 VIISHDPTIISMSDFSLIFHPIQG 543 ++I H+ ++S +D+ + F P G Sbjct: 143 ILIEHNLDVLSSADWIIDFGPGSG 166 >gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.. Length = 275 Score = 44.6 bits (105), Expect = 7e-05 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 10/173 (5%) Query: 331 ITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 +T K++ + + + +N+SF+I G + G +G GKS L L LL E G I Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQ 61 Query: 391 FGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQ---KTAKIVGC 447 + ++K+ G + Q +F + +N+ D + K A+ VG Sbjct: 62 IDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL----DPYGKWSDEEIWKVAEEVGL 117 Query: 448 HEDILSL--KNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 I + + + + Q + L+R + + ILL+DEP HLD Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 >gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246 Score = 44.5 bits (105), Expect = 8e-05 Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 34/194 (17%) Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG-------TISFGDRQISRDFIEKFSA 406 +I E I GP+G GK+ F+ + G+L ++G T+S+ + I D+ Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80 Query: 407 QIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDE 466 SIT++ +H IA K +I + + +G + Sbjct: 81 -----------LLSSITKDF-YTHPYFKTEIA-KPLQIEQILDREVPELSGGE------- 120 Query: 467 IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHD 525 +Q++ ++ ++ + I L+DEP +LD E + ++++F EN +KT ++ HD Sbjct: 121 -----LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 Query: 526 PTIISM-SDFSLIF 538 +I +D ++F Sbjct: 176 IIMIDYLADRLIVF 189 >gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]. Length = 908 Score = 43.5 bits (102), Expect = 2e-04 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 477 LSRIIANNPAI--LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534 LS ++ + L +DEP LD E +L++ + + I+IISH + +D Sbjct: 832 LSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 Query: 535 SLIFHPIQGS 544 + G Sbjct: 892 RIRVKKDGGR 901 >gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1391 Score = 43.3 bits (102), Expect = 2e-04 Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 41/230 (17%) Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLL---TLEKGTISFGDRQIS 397 KK I +++S I G ++ GP G GK+ L + G L G I++ + Sbjct: 124 KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITY-NGHDL 182 Query: 398 RDFIEKFSAQIGYLSQHCSLFPISITENII---------------LSHDQNSLHIAQKTA 442 ++F+ K + Y S+ FP + +S + + Sbjct: 183 KEFVPK--KTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL 240 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIP-YNIVQKIRLS--RIIANNPAILLMDEPLYHLDN 499 KI+G L + T +D + + ++ R+S ++ +IL DE LD+ Sbjct: 241 KILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDS 293 Query: 500 EAKNNFYTLLKQF-KENKKTIVIISHDPT---------IISMSDFSLIFH 539 L+Q T ++ P+ +I +S+ I+ Sbjct: 294 STAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQ 343 Score = 42.5 bits (100), Expect = 3e-04 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 29/226 (12%) Query: 327 SNNTITAKNIVF--RDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLT- 383 + ++ + + +R + N+S G + G SG GK+ L + G T Sbjct: 784 FKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG 843 Query: 384 -LEKGTISFGDRQISRDFIEKFSAQIGYLSQ---HCSLFPISITENIILSHDQNSLHIAQ 439 +G I + E F+ GY+ Q H +++ E++ S Sbjct: 844 GYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE--LTVRESLRFSAALRLPKEVS 898 Query: 440 KTAKIVGCHE--DILSLKNGYQTTYCSDEI------PYNIVQKIRLS---RIIANNPAIL 488 K E ++L LK +D + + Q+ RL+ ++AN +IL Sbjct: 899 DEEKYEYVEEVIELLELKE------YADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 Query: 489 LMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDF 534 +DEP LD++A L++ + +TI+ H P+I F Sbjct: 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF 998 >gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 330 Score = 43.1 bits (101), Expect = 2e-04 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 17/88 (19%) Query: 448 HEDILSLKNGYQTTYCSDEIPYNIV----QKIRLSRIIANNPAILLMDEPLYHLDNEAKN 503 H+DI+ PY + QK+ ++ +AN P +L+ DEP ++ + Sbjct: 148 HKDIMR------------SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195 Query: 504 NFYTLLKQFKENKKT-IVIISHDPTIIS 530 + LL + +N T I++ISHD +IS Sbjct: 196 QIFRLLSRLNQNSNTTILLISHDLQMIS 223 >gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 202 Score = 42.9 bits (101), Expect = 2e-04 Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 329 NTITAKNIVFRDKKTS--RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE- 385 +T++ +NI F K I ++ S + G ++ G G G S L + Sbjct: 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV 61 Query: 386 --KGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTA 442 +G I + ++F EK+ +I Y+S+ FP +++ E + + Sbjct: 62 SVEGDIHYNGIP-YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA------------L 108 Query: 443 KIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI--IANNPAILLMDEPLYHLDNE 500 + G +E + + G ++ R+S + + ++L D LD+ Sbjct: 109 RCKG-NEFVRGISGG---------------ERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 Query: 501 AKNNFYTLLKQFKENKKTIVIIS 523 ++ + KT +S Sbjct: 153 TALEILKCIRTMADVLKTTTFVS 175 >gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]. Length = 728 Score = 41.1 bits (96), Expect = 7e-04 Identities = 38/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 ++ L+F I G +I GP+GCGKS+ + GL + G +S Sbjct: 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN--------- 545 Query: 405 SAQIGYLSQHCSLFPISITENIIL---SHDQNSLHIAQK--TAKIVGCHEDILSLKNGYQ 459 I Y+ Q + ++ + II S + A + H + + + G Sbjct: 546 --NIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW 603 Query: 460 TTYC--SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK 517 D + Q++ ++R+ + P L+DE + + + + K Sbjct: 604 DAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GI 660 Query: 518 TIVIISHDPTIISMSDFSLIF 538 +++ I+H P++ L F Sbjct: 661 SLLSITHRPSLWKYHTHLLEF 681 >gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only, Transcription]. Length = 291 Score = 39.2 bits (91), Expect = 0.003 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 19/207 (9%) Query: 327 SNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEK 386 S+ I + F+ K + + + + +P GS C++ G +G GK+ L + G + Sbjct: 10 SDFAIEVSGLQFKYKVSDPIF-FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG 68 Query: 387 GTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIA-------- 438 G + R D + S + YL S E + L D ++ H+ Sbjct: 69 GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE-VPLQGDISAEHMIFGVGGDDP 127 Query: 439 QKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLD 498 ++ K++ DIL + ++ SD +++++ + +LL+DE LD Sbjct: 128 ERREKLI----DILDIDLRWRMHKVSD----GQRRRVQICMGLLKPFKVLLLDEVTVDLD 179 Query: 499 NEAKNNFYTLLKQFKENKK-TIVIISH 524 A+ + LK+ E + TIV +H Sbjct: 180 VLARADLLEFLKEECEQRGATIVYATH 206 >gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]. Length = 591 Score = 39.0 bits (91), Expect = 0.003 Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Query: 354 TIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ 413 I +G I GP+G GK+ F+ + G++ ++G S D ++S Y Q Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG--SEEDLKVS------------YKPQ 408 Query: 414 HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQ 473 + S E+++ S +++ + +IV L+L++ + DE+ +Q Sbjct: 409 YISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV----KPLNLEDLLERPV--DELSGGELQ 462 Query: 474 KIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIISHDPTIISM- 531 ++ ++ ++ + L+DEP +LD E + ++++F EN +KT +++ HD +I Sbjct: 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 Query: 532 SDFSLIF 538 SD ++F Sbjct: 523 SDRLIVF 529 Score = 34.8 bits (80), Expect = 0.070 Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS-M 531 Q++ ++ + + + DEP +LD + N ++++ E+ K ++++ HD ++ + Sbjct: 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYL 279 Query: 532 SDF 534 SDF Sbjct: 280 SDF 282 >gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 226 Score = 38.2 bits (89), Expect = 0.006 Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 46/227 (20%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 +N+ IP +I G SG GKS +L TI + + Q R ++E SA Sbjct: 12 KNVDVDIPRNKLVVITGVSGSGKS----------SLAFDTI-YAEGQ--RRYVESLSA-- 56 Query: 409 GYLSQHCSLFPISITENI-----ILSHDQNSLHIAQKTAKIVGCHEDI------------ 451 Y Q ++I ++ DQ + ++ VG +I Sbjct: 57 -YARQFLGQMDKPDVDSIEGLSPAIAIDQKT--TSRNPRSTVGTVTEIYDYLRLLFARVG 113 Query: 452 --------LSLKNGYQTTYCSDE-IPYNIVQKIRLSRIIANN--PAILLMDEPLYHLDNE 500 + + GY T S + Q+IRL+ I + + ++DEP L Sbjct: 114 IRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPR 173 Query: 501 AKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGSLFG 547 + LK+ ++ T++++ HD I +D + P G G Sbjct: 174 DNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGG 220 >gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 177 Score = 38.1 bits (88), Expect = 0.007 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 472 VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHDPTIIS 530 +Q++ ++ + N L DEP +LD E + N +++ +E KKT +++ HD ++ Sbjct: 77 LQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 Query: 531 -MSDFSLIFH 539 +SD +F Sbjct: 137 YLSDRIHVFE 146 Score = 28.0 bits (62), Expect = 7.0 Identities = 10/37 (27%), Positives = 16/37 (43%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISF 391 + EG I GP+G GK+ + + G L + Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW 58 >gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster assembly, ATPase component [Posttranslational modification, protein turnover, chaperones]. Length = 251 Score = 37.8 bits (88), Expect = 0.009 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 14/192 (7%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL--LTLEKGTISFGDRQI-SRDFIEK 403 I + ++ T+ EG I GP+G GKS ++G + +G I F I E+ Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78 Query: 404 FSAQIGYLSQHCSLFP-------ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456 A I Q+ P + N ++ + ++L L Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKA----ELLGLDE 134 Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 + Y ++ ++ + +++ P + ++DEP LD +A + +E Sbjct: 135 EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEG 194 Query: 517 KTIVIISHDPTI 528 + ++II+H + Sbjct: 195 RGVLIITHYQRL 206 >gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]. Length = 267 Score = 36.9 bits (85), Expect = 0.016 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 26/218 (11%) Query: 351 LSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 +SFT+ EG I G +G GKS + G++ G I D + S +I Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91 Query: 411 LSQHCSL-------------FPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNG 457 + Q + FP+ + + L +Q I + T ++VG D Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTD--LEPEQRRKQIFE-TLRMVGLLPD------- 141 Query: 458 YQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK- 516 Y + Q++ L+R + P I++ DE L LD ++ L+ + +E + Sbjct: 142 -HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200 Query: 517 -KTIVIISHDPTIISMSDFSLIFHPIQGSLFGLTQDIF 553 I + H I +SD L+ H + G T D+ Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 >gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.. Length = 200 Score = 35.5 bits (82), Expect = 0.043 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 36/181 (19%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLE--KGTISFGDRQISR-DFIEK 403 I + ++ TI +G + GP+G GKS ++G E +G I F I+ E+ Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 Query: 404 FSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYC 463 I Q+ P I +KN Y Sbjct: 75 ARLGIFLAFQY----PPEIPG-----------------------------VKNADFLRYV 101 Query: 464 SDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIIS 523 ++ ++ + +++ P + ++DEP LD +A ++ + +E K+++II+ Sbjct: 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIIT 161 Query: 524 H 524 H Sbjct: 162 H 162 >gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204 Score = 33.6 bits (77), Expect = 0.15 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 33/185 (17%) Query: 362 IIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFP-- 419 +I G +G GK+ + + LT E S G I + + Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKG-GAHDPKLIRE-GEVRAQVKLAFENANGK 83 Query: 420 -------ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIV 472 ++I EN+I H S E +L+ +++ Sbjct: 84 KYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLA----------------SLI 127 Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKT----IVIISHDPTI 528 ++ L+ +N IL +DEP +LD E +L + +E K +++I+HD + Sbjct: 128 IRLALAETFGSNCGILALDEPTTNLDEENIEE--SLAEIIEERKSQKNFQLIVITHDEEL 185 Query: 529 ISMSD 533 + +D Sbjct: 186 VDAAD 190 >gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.. Length = 213 Score = 33.3 bits (76), Expect = 0.17 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 477 LSRIIANNPAI----LLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMS 532 LS ++ N L +DE LD EA T L+ + + + +ISH + Sbjct: 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 Query: 533 DFSLIFHPIQGS 544 L G Sbjct: 200 PQRLEVIKTPGG 211 >gnl|CDD|33393 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]. Length = 581 Score = 33.4 bits (76), Expect = 0.17 Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 23/160 (14%) Query: 384 LEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAK 443 L K I + +S FS ++ L ++ + + + T + Sbjct: 211 LTKIEIRLKLKAVSELLEHYFSEVGKPQARERLLLRLNQNLKDSDLS-KYLKILLRNTKQ 269 Query: 444 IVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIA------NNPAILLMDEPLYHL 497 I +I S G N++ L I + P ILL++EP HL Sbjct: 270 I-----EIESNGLGL----------NNLIAMQLLQAIGSLELERVARPNILLIEEPEAHL 314 Query: 498 DNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLI 537 + + + LL + IV +H P ++S++D I Sbjct: 315 HPQLQAVLWDLLNNLPLGLQRIV-TTHSPHLLSLADLDSI 353 >gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 255 Score = 32.2 bits (73), Expect = 0.37 Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 472 VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISM 531 +Q++ ++ +A + DEP +LD + + N L+++ E+ ++++ HD ++ Sbjct: 145 LQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDY 204 Query: 532 -SDF 534 SD+ Sbjct: 205 LSDY 208 >gnl|CDD|144199 pfam00519, PPV_E1_C, Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508. Length = 432 Score = 32.1 bits (74), Expect = 0.43 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGT-ISF 391 IP+ +C +I GP GKS F CM L+ G ISF Sbjct: 259 IPKKNCLVIYGPPDTGKSMF--CM-SLIKFLGGKVISF 293 >gnl|CDD|145643 pfam02604, PhdYeFM, Phd_YefM. This domain complexes with pfam06769. Length = 75 Score = 31.9 bits (73), Expect = 0.44 Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Query: 499 NEAKNNFYTLLKQFKENKKTIVIISHD-PT--IISMSDF 534 +EAKNN LL + ++ ++ ++I P ++S+ ++ Sbjct: 7 SEAKNNLSELLDRVEKGEEPVIITRRGKPVAVLLSLEEY 45 >gnl|CDD|38765 KOG3557, KOG3557, KOG3557, Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]. Length = 721 Score = 32.0 bits (72), Expect = 0.49 Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 113 ISSLDQLKQFITSPVLPALLDILFTPIFIILSFCIHPILGS 153 + L +LK I P P L+ LFTP+ +I+ P L + Sbjct: 339 FNLLAKLKGHIHDPSAPELVHFLFTPLALIVEASSGPELAA 379 >gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 758 Score = 31.2 bits (70), Expect = 0.77 Identities = 9/39 (23%), Positives = 24/39 (61%) Query: 487 ILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 ++++D+P+ D+ L+K+ K N K +++++H+ Sbjct: 558 VVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN 596 >gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.. Length = 162 Score = 30.7 bits (69), Expect = 1.2 Identities = 17/72 (23%), Positives = 25/72 (34%) Query: 345 RLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKF 404 T EGS II GP+G GKS L + L + + + Sbjct: 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAV 67 Query: 405 SAQIGYLSQHCS 416 SA++ + S Sbjct: 68 SAELIFTRLQLS 79 >gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261 Score = 30.5 bits (69), Expect = 1.3 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG-----LLTLEKGTISFGDRQISRDFIEK 403 +N+ IP G + G SG GKS+ + L L L+K DR + I+K Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDK 71 Score = 29.4 bits (66), Expect = 3.0 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 Q+I+L++ + + + ++DEP L +L++ + T+V+I H+ +I Sbjct: 176 QRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 Query: 530 SMSDFSLIFHPIQGSLFG 547 +D+ + P G G Sbjct: 236 KCADWIIDLGPEGGDGGG 253 >gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA processing and modification]. Length = 592 Score = 30.3 bits (68), Expect = 1.5 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 473 QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVIISHD 525 Q++ L+ + + L+DEP +LD+E + ++K+F KKT ++ HD Sbjct: 463 QRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD 516 >gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction only]. Length = 301 Score = 30.3 bits (68), Expect = 1.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 G ++ G SG GKS + +L L + G IS Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEIS 196 >gnl|CDD|79364 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.. Length = 378 Score = 30.1 bits (68), Expect = 1.9 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 6/76 (7%) Query: 21 TILPSFFINIL-YLTNPLYMMHIYDSVIGTQSKINLIALSTITLFLYALFFGFDLIRSRL 79 ++P I+ + + I ++ L + + L + FG + RL Sbjct: 162 ALIPCLVAAIVADWVSHALGLEHTHYHIVFIPTLD--PLLFVKVILAGIIFG---LAGRL 216 Query: 80 LIESSHLIERFFKPYI 95 E H +++ K I Sbjct: 217 FAELLHFLKKLLKKRI 232 >gnl|CDD|29831 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.. Length = 579 Score = 29.8 bits (67), Expect = 2.2 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%) Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNF 374 L T PEG A PS CGK+N Sbjct: 232 LGVTNPEGEKKYFAAAFPSACGKTNL 257 >gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935 Score = 29.4 bits (66), Expect = 2.4 Identities = 10/27 (37%), Positives = 14/27 (51%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFL 375 +N+ IP G + G SG GKS + Sbjct: 618 KNIDVEIPLGVFTCVTGVSGSGKSTLI 644 Score = 29.0 bits (65), Expect = 3.6 Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 Q+++L++ + + + ++DEP L + +L + + T+++I H+ +I Sbjct: 829 QRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI 888 Query: 530 SMSDF 534 +D+ Sbjct: 889 KTADW 893 Score = 28.2 bits (63), Expect = 6.7 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 332 TAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKS 372 I R + L +N+ IP +I G SG GKS Sbjct: 2 MMDKIRIRGAREHNL--KNIDLEIPRNKLVVITGLSGSGKS 40 >gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).. Length = 197 Score = 29.6 bits (67), Expect = 2.4 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%) Query: 352 SFTIPEGSCCIIAGPSGCGKSN 373 + P G I+ GP+G GKSN Sbjct: 17 TIPFPPGLTAIV-GPNGSGKSN 37 >gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated. Length = 327 Score = 29.7 bits (67), Expect = 2.5 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 457 GYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 G Q CS PYN ++ S I +NNP I LY+L E +N Y L K Sbjct: 142 GLQIVACS--TPYNAKGLLK-SAIRSNNPVIFFEHVLLYNLKEEIPDNEYLL----PLEK 194 Query: 517 KTIVIISHDPTIISMS 532 +V +D TI++ S Sbjct: 195 AEVVRPGNDITILTYS 210 >gnl|CDD|144423 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. Catalyses the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate. Length = 586 Score = 29.5 bits (67), Expect = 2.5 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Query: 351 LSFTIPEGSCCIIAG--PSGCGKSNFLLCML 379 L T PEG IA PS CGK+N L ML Sbjct: 234 LGITNPEGRKKYIAAAFPSACGKTN--LAML 262 >gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.. Length = 287 Score = 29.4 bits (66), Expect = 2.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 +G ++ G SG GKS + +L L L G IS Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193 >gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]. Length = 1163 Score = 29.2 bits (65), Expect = 3.4 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFL 375 G I+ GP+G GKSN + Sbjct: 19 EINFSPGFTAIV-GPNGSGKSNIV 41 >gnl|CDD|133292 cd01892, Miro2, Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 169 Score = 28.7 bits (65), Expect = 3.8 Identities = 9/20 (45%), Positives = 10/20 (50%) Query: 361 CIIAGPSGCGKSNFLLCMLG 380 C + G G GKS L LG Sbjct: 7 CFVLGAKGSGKSALLRAFLG 26 >gnl|CDD|32701 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 235 Score = 28.7 bits (64), Expect = 4.1 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCML-GLLTLEKGTISFGDRQISRDFIEKFSAQIGY 410 IP GS +I G +G GKS G L R+FI K + Y Sbjct: 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFI-KQMESLSY 80 >gnl|CDD|33669 COG3880, COG3880, Uncharacterized protein with conserved CXXC pairs [Function unknown]. Length = 176 Score = 28.8 bits (64), Expect = 4.7 Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 410 YLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKN 456 Y +H +F I + L + + I Q+ +++GCH ++ K Sbjct: 40 YDIEHILVFSIHNVLSGELDNLKTKWQIEQEDEELLGCHNCGMTFKE 86 >gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. Length = 161 Score = 28.7 bits (65), Expect = 4.8 Identities = 15/34 (44%), Positives = 19/34 (55%) Query: 357 EGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTIS 390 +G ++AG SG GKS L +L L L G IS Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLPELDLRTGEIS 67 >gnl|CDD|29989 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .. Length = 235 Score = 28.2 bits (63), Expect = 5.5 Identities = 8/24 (33%), Positives = 10/24 (41%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCM 378 I GS I G G GK+ + Sbjct: 16 IETGSITEIFGEFGSGKTQLCHQL 39 >gnl|CDD|36919 KOG1707, KOG1707, KOG1707, Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]. Length = 625 Score = 28.4 bits (63), Expect = 6.2 Identities = 10/20 (50%), Positives = 11/20 (55%) Query: 361 CIIAGPSGCGKSNFLLCMLG 380 C + GP CGKS L LG Sbjct: 428 CFVVGPKNCGKSALLQSFLG 447 >gnl|CDD|34572 COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]. Length = 309 Score = 27.9 bits (62), Expect = 7.3 Identities = 10/44 (22%), Positives = 19/44 (43%) Query: 5 KYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIG 48 K A + S + + LP ++YL +P Y+ ++ G Sbjct: 240 KVRALSAEARMSAWILGALPLLVGLLIYLLSPDYLSFLWTDPTG 283 >gnl|CDD|30816 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]. Length = 279 Score = 28.0 bits (62), Expect = 7.5 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 20/131 (15%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQH 414 +P G I GP GK+ L ++ G +F D + + D Q Sbjct: 57 LPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALD--------PERAKQL 108 Query: 415 CSLFPISITENIILSHDQNS---LHIAQKTAKIVGCHEDIL---SLKNGYQTTYCSDEIP 468 + +N+++S L IA+K A+ D+L S+ + D Sbjct: 109 GV----DLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDG-- 162 Query: 469 YNIVQKIRLSR 479 + ++ LS+ Sbjct: 163 HLGLRARLLSK 173 >gnl|CDD|30003 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.. Length = 226 Score = 27.9 bits (62), Expect = 8.0 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 10/97 (10%) Query: 355 IPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRD----FIEKFSAQIGY 410 IP G I G G GK+ L + L + + D F + Q+ Sbjct: 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA- 74 Query: 411 LSQHCSLFPISITENIILSHDQNS---LHIAQKTAKI 444 L P + +NI ++ N L I ++ +I Sbjct: 75 --VRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERI 109 >gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated. Length = 252 Score = 27.7 bits (62), Expect = 8.3 Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 344 SRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 I + L+ +I +G I GP+G GKS Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTL 49 >gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed. Length = 153 Score = 27.8 bits (62), Expect = 8.6 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Query: 489 LMDEPLYHLDNEA--KNNFYTLLKQFKENKKTIVIISHDPTIISM 531 L + +D A N LL + + K ++I+SH TI ++ Sbjct: 70 LFEGLPVEVDPRARVLNALLELLARHLLDGKNVLIVSHGGTIRAL 114 >gnl|CDD|33744 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]. Length = 194 Score = 27.6 bits (61), Expect = 8.8 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Query: 238 VTKTLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNV 294 + L I W+ + GAI+ +S I AR MA +I+ + L V Sbjct: 1 LKNKLARKFDEEISFFKGWID--NPRTVGAILPSSSILARKMA---SVIDPESGLPV 52 >gnl|CDD|30594 COG0245, IspF, 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]. Length = 159 Score = 27.4 bits (61), Expect = 9.4 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 511 QFKENKKTI---VIISHDPTIISMSDFSLIFHPIQGSLFGLTQ--DIFKFNTVTHNQIKI 565 +F E + I V I H+ ++ SD ++ H + +L G DI K T + K Sbjct: 11 RFGEGRPLILGGVEIPHEKGLLGHSDGDVLLHALTDALLGAAGLGDIGKHFPDTDPRWKG 70 >gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. Length = 178 Score = 27.6 bits (62), Expect = 9.8 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKG 387 L + I + ++ GP G GK+ L C LG G Sbjct: 40 GLDW-IEQAENLLLLGPPGVGKT-HLACALGHQACRAG 75 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.139 0.403 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,700,599 Number of extensions: 369136 Number of successful extensions: 2044 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1869 Number of HSP's successfully gapped: 305 Length of query: 565 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 466 Effective length of database: 4,124,446 Effective search space: 1921991836 Effective search space used: 1921991836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 60 (26.9 bits)