BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] (565 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/565 (100%), Positives = 565/565 (100%) Query: 1 MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST 60 MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST Sbjct: 1 MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST 60 Query: 61 ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK 120 ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK Sbjct: 61 ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK 120 Query: 121 QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY 180 QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY Sbjct: 121 QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY 180 Query: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK Sbjct: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240 Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK Sbjct: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300 Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC Sbjct: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360 Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI Sbjct: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 Query: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI Sbjct: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480 Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP Sbjct: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540 Query: 541 IQGSLFGLTQDIFKFNTVTHNQIKI 565 IQGSLFGLTQDIFKFNTVTHNQIKI Sbjct: 541 IQGSLFGLTQDIFKFNTVTHNQIKI 565 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 75.1 bits (183), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISR 398 K+ R I +N++FT+ G + G SG GK++ +L G++ R +S Sbjct: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359 Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458 + I +F I ++ QH + S+ +NI + + Q A + HE I L+NGY Sbjct: 360 EEIRRF---IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416 Query: 459 QTTYCSDEIPYNI--VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516 T + + +Q+I ++R I + ILL+DE LD E + + +L++ + + Sbjct: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476 Query: 517 KTIVIISHDPTIISMSDFSLIFH 539 TI SH + I +D + H Sbjct: 477 TTI-FASHRLSAIQDADMVFVLH 498 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 71.6 bits (174), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 10/270 (3%) Query: 264 SAGAIIATSIITARAMA--PLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEP 321 +AG I+ S ITA MA P ++I ++ L G+ ++ + +L D ++ S Sbjct: 289 NAGEIM--SFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEES---PHA 343 Query: 322 ISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL 381 +++ + T +++ F K+ + ++ G + GPSG GKS + ++ + Sbjct: 344 VNLPVGKGTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM 402 Query: 382 LTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441 G+I I +I Y+ Q LF ++ NI++ + + Sbjct: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI 462 Query: 442 AKIVGCHEDILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499 AK H+ I+SL GY T + + Q+I ++R + + IL++DE LD Sbjct: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522 Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529 +N L + + + TIVI TII Sbjct: 523 HTENLVRQALSRLMQGRTTIVIAHRISTII 552 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/361 (24%), Positives = 145/361 (40%), Gaps = 47/361 (13%) Query: 211 LTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKL--SAGAI 268 + Y+N ++ + I+K ISV +L WL Q L S G + Sbjct: 230 IQYFNSEKFEINRLEKYISKYKESAISVATSL------------GWLNFGQGLIFSIGMV 277 Query: 269 IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN----------------------LN 306 I T II++ A+ EQ + +N L L +N LN Sbjct: 278 I-TMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILN 336 Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366 + + N+ +SK +++ N I N+ F I + +SF I + G Sbjct: 337 EKIEIQNAVNSK----DLKIKNGHIVFNNVSF-SYNHHNCIFKGISFEIAPSKKTALIGE 391 Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426 SG GKS + L ++ G I+ + I + E IG + Q LF ++ NI Sbjct: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451 Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANN 484 + + S ++ I+ L NGY T + + +K R+S R I N Sbjct: 452 LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511 Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGS 544 P I++ DE LD + + T L +N+ T+V I+H + I+ +D ++F QG+ Sbjct: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV-IAHRLSTITDADNIIVFD--QGT 568 Query: 545 L 545 + Sbjct: 569 V 569 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL-LTLEK----GTISFGDRQISRDFIE-- 402 +++ IP+ S + GPSGCGKS FL C+ + T++ G I + I + ++ Sbjct: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83 Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 + A++G + Q + FP SI +N+ + L A I E +SLK Sbjct: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL--GNNKADIDQIVE--MSLKKASLFNE 139 Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515 D + ++ Q++ ++R +A NP ++LMDEP LD A + L+ + +E+ Sbjct: 140 VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES 199 Query: 516 KKTIVIISHD-PTIISMSDFSLIFH 539 TIVI++H +S + +FH Sbjct: 200 -LTIVIVTHSMQQAARVSQRAAMFH 223 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 60.5 bits (145), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 99/199 (49%), Gaps = 14/199 (7%) Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 L+ ++F + G + G SG GKS L + GL++ G + F ++ I+ Sbjct: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-----IKDPP 85 Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 I + Q +LFP +++ EN+ L + ++ + + D++ L +G+++ + + Sbjct: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGL-DGFESAHTT 143 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENK---KTIV 520 EI ++Q++ +R P++LLMDEP LD N T L+ + E + ++++ Sbjct: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202 Query: 521 IISHD-PTIISMSDFSLIF 538 +++H+ + M D L+F Sbjct: 203 MVTHNIEEAVLMCDRVLVF 221 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 50/221 (22%) Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380 P+ RL + I AK I RL+ NLSF +P G + GP+G GK+ + G Sbjct: 308 PVGKRLGHVVIEAKGI--SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 Query: 381 LLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQK 440 + + GTI G+ + + Y+ Q ++SL + Sbjct: 366 DESPDSGTIHVGE-----------TVCLSYVDQ-----------------SRDSLEAEKT 397 Query: 441 TAKIVGCHEDILSLKNGYQ---TTYCS-------------DEIPYNIVQKIRLSRIIANN 484 + + +DI+ L NG++ YCS + ++ L++I+ + Sbjct: 398 VWEDISGGDDIVKL-NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456 Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 ++L+DEP LD E + L+ F VIISHD Sbjct: 457 GNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHD 494 Score = 33.9 bits (76), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 43/203 (21%) Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409 NLSF P+ I+ GP+G GKS L M G+ D++ + + +G Sbjct: 26 NLSF-YPDAKIGIL-GPNGAGKSTILRIMAGI-----------DKEYNGEAWLATGFTVG 72 Query: 410 YLSQHCSL-FPISITENII--LSHDQ------NSLHI--AQKTAKIVGCHEDILSLKNGY 458 YL Q L ++ ENII ++H Q N L + ++KT + + +DI+ K + Sbjct: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 Query: 459 ----------QTTYCSDE------IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502 ++ +C + + +++ L +++ ++P +LL+DEP HLD E Sbjct: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET- 191 Query: 503 NNFYTLLKQFKENKKTIVIISHD 525 + K +E +++++HD Sbjct: 192 --IAWMEKYLREYSGAVLMVTHD 212 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 14/225 (6%) Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-D 399 K S + + + + G + GP+G GK+ F M GL+ + G+I I++ Sbjct: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93 Query: 400 FIEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458 + I YL Q S+F +++ ENI+ L + +K K HE + SL + Sbjct: 94 MYRRARLGISYLPQEASIFRGLTVEENILA-----VLEVYEKDKK--KRHEKLDSLLKEF 146 Query: 459 QTT----YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514 T + + +++ ++R + + P+ +L+DEP +D A ++ + L++ Sbjct: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 Query: 515 NKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558 I+I H+ I+++ D + I H G Q+I V Sbjct: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 53.5 bits (127), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL-EKGTISFGDRQISRDFIEKFS 405 + +N+ ++ +G + PSG GKS +L + GLL + ++G + ++ ++ +K S Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83 Query: 406 ----AQIGYLSQ-HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ- 459 ++IG++ Q H L S+ ENII Q I KTA D+LS + Q Sbjct: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFP--QIIAGINHKTAYQRAM--DLLSYMDMSQY 139 Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510 S +I Q++ + R IAN P I+L DEP +LD + +++LK Sbjct: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 53.1 bits (126), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 24/182 (13%) Query: 358 GSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-----RDFIEKFSAQIGYLS 412 G + G SG GKS + +LGL+ G + ++ ++F FSA++G L Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF--AFSAKLGVLF 96 Query: 413 QHCSLF-PISITENIILSHDQN-------SLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464 QH +LF +++ ENI + ++ HI IVG + +L Sbjct: 97 QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL--------MP 148 Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523 ++ +++++ L+R +A +P +L +DEP LD A F LL + + + ++ +I+ Sbjct: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208 Query: 524 HD 525 HD Sbjct: 209 HD 210 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF--IEKFSA 406 ++++ + G IIAGPSG GKS + C+ + + G I ++ D I + Sbjct: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93 Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 +G + QH +LF +S+ EN L + +K A+ + H + +K ++ S Sbjct: 94 DVGMVFQHFNLFSNLSVLENCTLGPIW-VRKMPKKDAEELAMHY-LNKVKIADKSHRSSS 151 Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 + Q+ ++R + P I+L DEP LD E ++ + E T+V ++H+ Sbjct: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 35/228 (15%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408 ++++ IPE + + G +G GKS ++GL+ L+KG+IS ++ + I Sbjct: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL---I 85 Query: 409 GYLSQHCSL---FPISITENIILSH----------DQNSLHIAQKTAKIVGC----HEDI 451 Y+ Q S+ FPI + + +++ N I + + VG I Sbjct: 86 AYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145 Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511 L G Q +++ L+R +A +++MDEP +D + + LLK Sbjct: 146 GELSIGQQ-------------KRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192 Query: 512 FKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558 I++ +H+ +I S D + IF GLT DIF + + Sbjct: 193 LLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNI 239 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411 F + + +I GPSG GKS L M G +G+I + +R K I L Sbjct: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--L 76 Query: 412 SQHCSLF---------PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462 Q +LF + I N+ L H Q++ + Q K+ ED N + + Sbjct: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVF--LEDFF---NRFPSQM 130 Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521 + Q++ L+R + ILL+DEP D ++ LLKQ E + T+++ Sbjct: 131 SGGQ-----RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185 Query: 522 ISHD 525 ISH+ Sbjct: 186 ISHN 189 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 21/188 (11%) Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411 + + +G ++ G SG GKS L + GL + +G + + F+ ++A L Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---DTDKGFVNPYAADANVL 105 Query: 412 S-----------QHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459 Q +L P ++ N+ L + + ++ ++ V H +I++L + Sbjct: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR-VAEHLEIVNL---TK 161 Query: 460 TTYCS-DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFKENKK 517 C + + + Q++ +R A ILLMDEP LD + LL ++ KK Sbjct: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221 Query: 518 TIVIISHD 525 TIV +SHD Sbjct: 222 TIVFVSHD 229 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 44.3 bits (103), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 21/209 (10%) Query: 322 ISMRLSNNTITAKNIVFRDKKT----SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC 377 I L + K ++ DK T RL+ ++ S I G C I GP+G GK+ L Sbjct: 270 IQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL 329 Query: 378 MLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ-HCSLFPISITENIILSHDQNSLH 436 + G + + G I+ G + +I + Q + P + + +SL Sbjct: 330 LTGKIKPDCGFITLG-----------TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM 378 Query: 437 IAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496 + ++ + G +D L + Q + + ++R++A L+MDEP Sbjct: 379 VRGESRHVAGYIKDFLFHPD--QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436 Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHD 525 LD E + + Q + TI+I+SHD Sbjct: 437 LDFETLDFLERTITQL---QGTILIVSHD 462 Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 59/172 (34%) Query: 347 ICQNLSFTI-PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405 + Q++ +I P+ C++ G +G GKS L G+ + G + F+ S Sbjct: 20 LLQDVCLSIKPKERICLV-GCNGSGKSTLLKIAAGITEPQSGNV----------FLHS-S 67 Query: 406 AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465 +++GYL Q+ L S I ++K+ + Y Sbjct: 68 SRLGYLEQNPDLSHFSTISQYIDD-----------------------TIKDTIEAPYS-- 102 Query: 466 EIPYNIVQK-------------------IRLSRIIANNPAILLMDEPLYHLD 498 PY++++K + L +++ + P IL++DEP HLD Sbjct: 103 --PYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 43.1 bits (100), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 31/198 (15%) Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406 I Q+++FTI + GP+G GKS + G++ G++ + I Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74 Query: 407 QIGYLSQHCSL---FPISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460 +GY+ Q ++ P+S+ + L S + L I + I + +I L G Sbjct: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE-- 131 Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519 Q+ L++ + P +L++DEPL +D + + Y L+ +++ I Sbjct: 132 -----------FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180 Query: 520 VIISHDPTIISMSDFSLI 537 ++ISH+ ++ S ++I Sbjct: 181 LLISHNLHMVMASTDTVI 198 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 32.3 bits (72), Expect = 0.022, Method: Compositional matrix adjust. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 473 QKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530 Q+IRL+ I + + ++DEP L LK ++ T++++ HD + Sbjct: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML 569 Query: 531 MSDFSLIFHPIQG 543 +D + P G Sbjct: 570 AADHIVDIGPEAG 582 Score = 28.9 bits (63), Expect = 0.24, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 KNI R + L QN+S +P ++ G SG GKS+ Sbjct: 5 KNISIRGAREHNL--QNISIELPRNKLIVMTGVSGSGKSSL 43 Score = 27.7 bits (60), Expect = 0.50, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379 +N++ +IP G I G SG GKS FL+ L Sbjct: 641 KNVTGSIPLGLFTAITGISGGGKSTFLISTL 671 Score = 25.8 bits (55), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529 Q+++L++ + A + ++DEP L +L + +I++I H+ +I Sbjct: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911 Query: 530 SMSDFSLIF 538 +D+ L F Sbjct: 912 KTADWILDF 920 >gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 30.0 bits (66), Expect = 0.099, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 123 ITSPVLPALLDI--LFTPIFIILSFCIHPILG--SWAILSGI 160 +TS V +L D L T F+++ FCI PI+ SWA+ S I Sbjct: 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI 42 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 26.9 bits (58), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%) Query: 279 MAPLEQIINSKKSLNVGL-KSLKYLINLND-FTTLL------NSSDSKKEP-ISMRLSNN 329 MAP+ I NV L S + L NL + FTT+L + ++ P I RLS Sbjct: 269 MAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQ- 327 Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEG 358 KN++ R ++ +++ ++ F PEG Sbjct: 328 ----KNLIERTEEQKKILEESAQFVRPEG 352 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 26.2 bits (56), Expect = 1.6, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 478 SRIIANNPA---ILLMDEPLYHLDNEAKNNFYTLL 509 +R+I+N ILL+DE HLD + +N + ++ Sbjct: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338 >gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 13/46 (28%) Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420 L+C+ G + R +SRDF+E + +I L+ H SL P+ Sbjct: 85 LICLAGYM-----------RLLSRDFVESYKNKI--LNIHPSLLPL 117 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374 KN+ + T I + L+ + I GP+G GKS Sbjct: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45 >gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62] Length = 215 Score = 24.3 bits (51), Expect = 5.0, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 13/20 (65%) Query: 517 KTIVIISHDPTIISMSDFSL 536 K I I S DP II+ SDF L Sbjct: 162 KNITINSSDPVIITHSDFVL 181 >gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 245 Score = 23.9 bits (50), Expect = 7.9, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 200 YIYAPSTRDFLLTYWN 215 +IY P+T +FLL W+ Sbjct: 145 FIYPPTTLEFLLKNWD 160 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.139 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 358,767 Number of Sequences: 1233 Number of extensions: 15401 Number of successful extensions: 107 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 34 length of query: 565 length of database: 328,796 effective HSP length: 79 effective length of query: 486 effective length of database: 231,389 effective search space: 112455054 effective search space used: 112455054 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 41 (20.4 bits)