BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764467|ref|YP_003064798.2| Type I secretion system
ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62]
(565 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/565 (100%), Positives = 565/565 (100%)
Query: 1 MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST 60
MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST
Sbjct: 1 MYHLKYSANFMKIYFSFFCITILPSFFINILYLTNPLYMMHIYDSVIGTQSKINLIALST 60
Query: 61 ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK 120
ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK
Sbjct: 61 ITLFLYALFFGFDLIRSRLLIESSHLIERFFKPYIITVTKKYEMDGTSLFSIISSLDQLK 120
Query: 121 QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY 180
QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY
Sbjct: 121 QFITSPVLPALLDILFTPIFIILSFCIHPILGSWAILSGILLLTITILFQANNERLERRY 180
Query: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240
KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK
Sbjct: 181 KKSRQDEINFGKAILHNSEYIYAPSTRDFLLTYWNKKRATSQEYQSLIAKKYYFGISVTK 240
Query: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300
TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK
Sbjct: 241 TLRMTLQSSILGIGAWLVIHQKLSAGAIIATSIITARAMAPLEQIINSKKSLNVGLKSLK 300
Query: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360
YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC
Sbjct: 301 YLINLNDFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSC 360
Query: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420
CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI
Sbjct: 361 CIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420
Query: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480
SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI
Sbjct: 421 SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRI 480
Query: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540
IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP
Sbjct: 481 IANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHP 540
Query: 541 IQGSLFGLTQDIFKFNTVTHNQIKI 565
IQGSLFGLTQDIFKFNTVTHNQIKI
Sbjct: 541 IQGSLFGLTQDIFKFNTVTHNQIKI 565
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 75.1 bits (183), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 342 KTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGD---RQISR 398
K+ R I +N++FT+ G + G SG GK++ +L G++ R +S
Sbjct: 300 KSKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSL 359
Query: 399 DFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
+ I +F I ++ QH + S+ +NI + + Q A + HE I L+NGY
Sbjct: 360 EEIRRF---IAWVPQHPIMIAASVYDNIAIGCPHATRKEIQNAAMLAQAHEFIGCLENGY 416
Query: 459 QTTYCSDEIPYNI--VQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENK 516
T + + +Q+I ++R I + ILL+DE LD E + + +L++ + +
Sbjct: 417 DTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLREQRRGR 476
Query: 517 KTIVIISHDPTIISMSDFSLIFH 539
TI SH + I +D + H
Sbjct: 477 TTI-FASHRLSAIQDADMVFVLH 498
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 71.6 bits (174), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 10/270 (3%)
Query: 264 SAGAIIATSIITARAMA--PLEQIINSKKSLNVGLKSLKYLINLNDFTTLLNSSDSKKEP 321
+AG I+ S ITA MA P ++I ++ L G+ ++ + +L D ++ S
Sbjct: 289 NAGEIM--SFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEES---PHA 343
Query: 322 ISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL 381
+++ + T +++ F K+ + ++ G + GPSG GKS + ++ +
Sbjct: 344 VNLPVGKGTTVFRDVFFSYKQ-GHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRM 402
Query: 382 LTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKT 441
G+I I +I Y+ Q LF ++ NI++ + +
Sbjct: 403 YDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEI 462
Query: 442 AKIVGCHEDILSLKNGYQTTYCSD--EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDN 499
AK H+ I+SL GY T + + Q+I ++R + + IL++DE LD
Sbjct: 463 AKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT 522
Query: 500 EAKNNFYTLLKQFKENKKTIVIISHDPTII 529
+N L + + + TIVI TII
Sbjct: 523 HTENLVRQALSRLMQGRTTIVIAHRISTII 552
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 145/361 (40%), Gaps = 47/361 (13%)
Query: 211 LTYWNKKRATSQEYQSLIAKKYYFGISVTKTLRMTLQSSILGIGAWLVIHQKL--SAGAI 268
+ Y+N ++ + I+K ISV +L WL Q L S G +
Sbjct: 230 IQYFNSEKFEINRLEKYISKYKESAISVATSL------------GWLNFGQGLIFSIGMV 277
Query: 269 IATSIITARAMAPLEQIINSKKSLNVGLKSLKYLIN----------------------LN 306
I T II++ A+ EQ + +N L L +N LN
Sbjct: 278 I-TMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTIYRDSRQSFIEIEELLNILN 336
Query: 307 DFTTLLNSSDSKKEPISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGP 366
+ + N+ +SK +++ N I N+ F I + +SF I + G
Sbjct: 337 EKIEIQNAVNSK----DLKIKNGHIVFNNVSF-SYNHHNCIFKGISFEIAPSKKTALIGE 391
Query: 367 SGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENI 426
SG GKS + L ++ G I+ + I + E IG + Q LF ++ NI
Sbjct: 392 SGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITKESLRQTIGIIPQDTILFNDTLRYNI 451
Query: 427 ILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLS--RIIANN 484
+ + S ++ I+ L NGY T + + +K R+S R I N
Sbjct: 452 LYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKN 511
Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIISMSDFSLIFHPIQGS 544
P I++ DE LD + + T L +N+ T+V I+H + I+ +D ++F QG+
Sbjct: 512 PPIIIFDEATSSLDIITERHIQTALATLSKNRTTLV-IAHRLSTITDADNIIVFD--QGT 568
Query: 545 L 545
+
Sbjct: 569 V 569
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGL-LTLEK----GTISFGDRQISRDFIE-- 402
+++ IP+ S + GPSGCGKS FL C+ + T++ G I + I + ++
Sbjct: 24 DINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVV 83
Query: 403 KFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
+ A++G + Q + FP SI +N+ + L A I E +SLK
Sbjct: 84 RLRARVGMVFQRPNPFPKSIYDNVAYGPRIHGL--GNNKADIDQIVE--MSLKKASLFNE 139
Query: 463 CSDEIPYNIV-------QKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN 515
D + ++ Q++ ++R +A NP ++LMDEP LD A + L+ + +E+
Sbjct: 140 VKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRES 199
Query: 516 KKTIVIISHD-PTIISMSDFSLIFH 539
TIVI++H +S + +FH
Sbjct: 200 -LTIVIVTHSMQQAARVSQRAAMFH 223
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 60.5 bits (145), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 99/199 (49%), Gaps = 14/199 (7%)
Query: 346 LICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
L+ ++F + G + G SG GKS L + GL++ G + F ++ I+
Sbjct: 31 LVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKGKK-----IKDPP 85
Query: 406 AQIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
I + Q +LFP +++ EN+ L + ++ + + D++ L +G+++ + +
Sbjct: 86 KDISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAI-DLIGL-DGFESAHTT 143
Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYT-LLKQFKENK---KTIV 520
EI ++Q++ +R P++LLMDEP LD N T L+ + E + ++++
Sbjct: 144 -EISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESML 202
Query: 521 IISHD-PTIISMSDFSLIF 538
+++H+ + M D L+F
Sbjct: 203 MVTHNIEEAVLMCDRVLVF 221
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380
P+ RL + I AK I RL+ NLSF +P G + GP+G GK+ + G
Sbjct: 308 PVGKRLGHVVIEAKGI--SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
Query: 381 LLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQK 440
+ + GTI G+ + + Y+ Q ++SL +
Sbjct: 366 DESPDSGTIHVGE-----------TVCLSYVDQ-----------------SRDSLEAEKT 397
Query: 441 TAKIVGCHEDILSLKNGYQ---TTYCS-------------DEIPYNIVQKIRLSRIIANN 484
+ + +DI+ L NG++ YCS + ++ L++I+ +
Sbjct: 398 VWEDISGGDDIVKL-NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456
Query: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
++L+DEP LD E + L+ F VIISHD
Sbjct: 457 GNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHD 494
Score = 33.9 bits (76), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 43/203 (21%)
Query: 350 NLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIG 409
NLSF P+ I+ GP+G GKS L M G+ D++ + + +G
Sbjct: 26 NLSF-YPDAKIGIL-GPNGAGKSTILRIMAGI-----------DKEYNGEAWLATGFTVG 72
Query: 410 YLSQHCSL-FPISITENII--LSHDQ------NSLHI--AQKTAKIVGCHEDILSLKNGY 458
YL Q L ++ ENII ++H Q N L + ++KT + + +DI+ K +
Sbjct: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132
Query: 459 ----------QTTYCSDE------IPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAK 502
++ +C + + +++ L +++ ++P +LL+DEP HLD E
Sbjct: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET- 191
Query: 503 NNFYTLLKQFKENKKTIVIISHD 525
+ K +E +++++HD
Sbjct: 192 --IAWMEKYLREYSGAVLMVTHD 212
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 14/225 (6%)
Query: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-D 399
K S + + + + G + GP+G GK+ F M GL+ + G+I I++
Sbjct: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93
Query: 400 FIEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
+ I YL Q S+F +++ ENI+ L + +K K HE + SL +
Sbjct: 94 MYRRARLGISYLPQEASIFRGLTVEENILA-----VLEVYEKDKK--KRHEKLDSLLKEF 146
Query: 459 QTT----YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
T + + +++ ++R + + P+ +L+DEP +D A ++ + L++
Sbjct: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
Query: 515 NKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558
I+I H+ I+++ D + I H G Q+I V
Sbjct: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 53.5 bits (127), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTL-EKGTISFGDRQISRDFIEKFS 405
+ +N+ ++ +G + PSG GKS +L + GLL + ++G + ++ ++ +K S
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKST-ILHIAGLLEVPDQGNVIIANQLCNKLSDDKKS 83
Query: 406 ----AQIGYLSQ-HCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ- 459
++IG++ Q H L S+ ENII Q I KTA D+LS + Q
Sbjct: 84 FLRCSKIGFVYQEHRLLMDFSVIENIIFP--QIIAGINHKTAYQRAM--DLLSYMDMSQY 139
Query: 460 TTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLK 510
S +I Q++ + R IAN P I+L DEP +LD + +++LK
Sbjct: 140 ANRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILK 190
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 53.1 bits (126), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 358 GSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQIS-----RDFIEKFSAQIGYLS 412
G + G SG GKS + +LGL+ G + ++ ++F FSA++G L
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNF--AFSAKLGVLF 96
Query: 413 QHCSLF-PISITENIILSHDQN-------SLHIAQKTAKIVGCHEDILSLKNGYQTTYCS 464
QH +LF +++ ENI + ++ HI IVG + +L
Sbjct: 97 QHGALFSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAIVGLPPETANL--------MP 148
Query: 465 DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKEN-KKTIVIIS 523
++ +++++ L+R +A +P +L +DEP LD A F LL + + + ++ +I+
Sbjct: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
Query: 524 HD 525
HD
Sbjct: 209 HD 210
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF--IEKFSA 406
++++ + G IIAGPSG GKS + C+ + + G I ++ D I +
Sbjct: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
Query: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
+G + QH +LF +S+ EN L + +K A+ + H + +K ++ S
Sbjct: 94 DVGMVFQHFNLFSNLSVLENCTLGPIW-VRKMPKKDAEELAMHY-LNKVKIADKSHRSSS 151
Query: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
+ Q+ ++R + P I+L DEP LD E ++ + E T+V ++H+
Sbjct: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 35/228 (15%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQI 408
++++ IPE + + G +G GKS ++GL+ L+KG+IS ++ + I
Sbjct: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL---I 85
Query: 409 GYLSQHCSL---FPISITENIILSH----------DQNSLHIAQKTAKIVGC----HEDI 451
Y+ Q S+ FPI + + +++ N I + + VG I
Sbjct: 86 AYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
Query: 452 LSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQ 511
L G Q +++ L+R +A +++MDEP +D + + LLK
Sbjct: 146 GELSIGQQ-------------KRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
Query: 512 FKENKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558
I++ +H+ +I S D + IF GLT DIF + +
Sbjct: 193 LLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNI 239
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 50.1 bits (118), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411
F + + +I GPSG GKS L M G +G+I + +R K I L
Sbjct: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSI--L 76
Query: 412 SQHCSLF---------PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTY 462
Q +LF + I N+ L H Q++ + Q K+ ED N + +
Sbjct: 77 FQENNLFSHLTVWQNIALGIAPNLRLDHYQHA-QVKQMLEKVF--LEDFF---NRFPSQM 130
Query: 463 CSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQF-KENKKTIVI 521
+ Q++ L+R + ILL+DEP D ++ LLKQ E + T+++
Sbjct: 131 SGGQ-----RQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLM 185
Query: 522 ISHD 525
ISH+
Sbjct: 186 ISHN 189
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 21/188 (11%)
Query: 352 SFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYL 411
+ + +G ++ G SG GKS L + GL + +G + + F+ ++A L
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---DTDKGFVNPYAADANVL 105
Query: 412 S-----------QHCSLFPI-SITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQ 459
Q +L P ++ N+ L + + ++ ++ V H +I++L +
Sbjct: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR-VAEHLEIVNL---TK 161
Query: 460 TTYCS-DEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFY-TLLKQFKENKK 517
C + + + Q++ +R A ILLMDEP LD + LL ++ KK
Sbjct: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
Query: 518 TIVIISHD 525
TIV +SHD
Sbjct: 222 TIVFVSHD 229
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 44.3 bits (103), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 21/209 (10%)
Query: 322 ISMRLSNNTITAKNIVFRDKKT----SRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLC 377
I L + K ++ DK T RL+ ++ S I G C I GP+G GK+ L
Sbjct: 270 IQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKL 329
Query: 378 MLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQ-HCSLFPISITENIILSHDQNSLH 436
+ G + + G I+ G + +I + Q + P + + +SL
Sbjct: 330 LTGKIKPDCGFITLG-----------TNLKIATIDQKREDIDPDKSLASYLTGSSGDSLM 378
Query: 437 IAQKTAKIVGCHEDILSLKNGYQTTYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYH 496
+ ++ + G +D L + Q + + ++R++A L+MDEP
Sbjct: 379 VRGESRHVAGYIKDFLFHPD--QAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTND 436
Query: 497 LDNEAKNNFYTLLKQFKENKKTIVIISHD 525
LD E + + Q + TI+I+SHD
Sbjct: 437 LDFETLDFLERTITQL---QGTILIVSHD 462
Score = 30.0 bits (66), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 59/172 (34%)
Query: 347 ICQNLSFTI-PEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFS 405
+ Q++ +I P+ C++ G +G GKS L G+ + G + F+ S
Sbjct: 20 LLQDVCLSIKPKERICLV-GCNGSGKSTLLKIAAGITEPQSGNV----------FLHS-S 67
Query: 406 AQIGYLSQHCSLFPISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
+++GYL Q+ L S I ++K+ + Y
Sbjct: 68 SRLGYLEQNPDLSHFSTISQYIDD-----------------------TIKDTIEAPYS-- 102
Query: 466 EIPYNIVQK-------------------IRLSRIIANNPAILLMDEPLYHLD 498
PY++++K + L +++ + P IL++DEP HLD
Sbjct: 103 --PYSLLKKFNLREQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLD 152
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 43.1 bits (100), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 31/198 (15%)
Query: 347 ICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDFIEKFSA 406
I Q+++FTI + GP+G GKS + G++ G++ + I
Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLI---------- 74
Query: 407 QIGYLSQHCSL---FPISITENIIL---SHDQNSLHIAQKTAKIVGCHEDILSLKNGYQT 460
+GY+ Q ++ P+S+ + L S + L I + I + +I L G
Sbjct: 75 -VGYVPQKVTIENTLPLSLMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDLSGGE-- 131
Query: 461 TYCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKK-TI 519
Q+ L++ + P +L++DEPL +D + + Y L+ +++ I
Sbjct: 132 -----------FQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGI 180
Query: 520 VIISHDPTIISMSDFSLI 537
++ISH+ ++ S ++I
Sbjct: 181 LLISHNLHMVMASTDTVI 198
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 32.3 bits (72), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 473 QKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530
Q+IRL+ I + + ++DEP L LK ++ T++++ HD +
Sbjct: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML 569
Query: 531 MSDFSLIFHPIQG 543
+D + P G
Sbjct: 570 AADHIVDIGPEAG 582
Score = 28.9 bits (63), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
KNI R + L QN+S +P ++ G SG GKS+
Sbjct: 5 KNISIRGAREHNL--QNISIELPRNKLIVMTGVSGSGKSSL 43
Score = 27.7 bits (60), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCML 379
+N++ +IP G I G SG GKS FL+ L
Sbjct: 641 KNVTGSIPLGLFTAITGISGGGKSTFLISTL 671
Score = 25.8 bits (55), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
Q+++L++ + A + ++DEP L +L + +I++I H+ +I
Sbjct: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911
Query: 530 SMSDFSLIF 538
+D+ L F
Sbjct: 912 KTADWILDF 920
>gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 317
Score = 30.0 bits (66), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 123 ITSPVLPALLDI--LFTPIFIILSFCIHPILG--SWAILSGI 160
+TS V +L D L T F+++ FCI PI+ SWA+ S I
Sbjct: 1 MTSKVFTSLSDFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRI 42
>gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 429
Score = 26.9 bits (58), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 279 MAPLEQIINSKKSLNVGL-KSLKYLINLND-FTTLL------NSSDSKKEP-ISMRLSNN 329
MAP+ I NV L S + L NL + FTT+L + ++ P I RLS
Sbjct: 269 MAPIVARIKRAGIHNVQLHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQ- 327
Query: 330 TITAKNIVFRDKKTSRLICQNLSFTIPEG 358
KN++ R ++ +++ ++ F PEG
Sbjct: 328 ----KNLIERTEEQKKILEESAQFVRPEG 352
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 26.2 bits (56), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 478 SRIIANNPA---ILLMDEPLYHLDNEAKNNFYTLL 509
+R+I+N ILL+DE HLD + +N + ++
Sbjct: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
>gi|254780570|ref|YP_003064983.1| phosphoribosylglycinamide formyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 205
Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 13/46 (28%)
Query: 375 LLCMLGLLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPI 420
L+C+ G + R +SRDF+E + +I L+ H SL P+
Sbjct: 85 LICLAGYM-----------RLLSRDFVESYKNKI--LNIHPSLLPL 117
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
KN+ + T I + L+ + I GP+G GKS
Sbjct: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
>gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 24.3 bits (51), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 517 KTIVIISHDPTIISMSDFSL 536
K I I S DP II+ SDF L
Sbjct: 162 KNITINSSDPVIITHSDFVL 181
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 23.9 bits (50), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 200 YIYAPSTRDFLLTYWN 215
+IY P+T +FLL W+
Sbjct: 145 FIYPPTTLEFLLKNWD 160
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,767
Number of Sequences: 1233
Number of extensions: 15401
Number of successful extensions: 107
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 34
length of query: 565
length of database: 328,796
effective HSP length: 79
effective length of query: 486
effective length of database: 231,389
effective search space: 112455054
effective search space used: 112455054
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 41 (20.4 bits)