BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764468|ref|YP_003064806.2| permease protein [Candidatus
Liberibacter asiaticus str. psy62]
         (361 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547819|gb|ACT56866.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV
Sbjct: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI
Sbjct: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD
Sbjct: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL
Sbjct: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR
Sbjct: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK
Sbjct: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360

Query: 361 I 361
           I
Sbjct: 361 I 361


>gi|315122195|ref|YP_004062684.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495597|gb|ADR52196.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 283

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/283 (66%), Positives = 224/283 (79%), Gaps = 1/283 (0%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           MNRN EL IIDNTGTSRITLIKPVLF AILLSIFLFI EN +EPK R+ IK+L A+A L 
Sbjct: 1   MNRNAELFIIDNTGTSRITLIKPVLFFAILLSIFLFILENTLEPKYRTEIKRLGAQAYLN 60

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
           LT S LEENLFF L+++ YIK+SK NPNNT+QGIF +DS D   H+IYYA+SG +DL+++
Sbjct: 61  LTLSSLEENLFFNLNNNFYIKVSKRNPNNTMQGIFAIDSSDPIIHRIYYAKSGFVDLEKK 120

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSSTIVLKANDQNLSFLLNPNPNNP 258
            IIL  GEVHRKS +SKDISIMKF SY L  +S      I LKA+DQNLSFLLNP+PNNP
Sbjct: 121 IIILQKGEVHRKSSVSKDISIMKFDSYALDMQSLLAKQDITLKAHDQNLSFLLNPDPNNP 180

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
           +YR   +  YRSE HKRLTQWLFP++FGLISI++ +K + +R  +K+HP  I+L +SF V
Sbjct: 181 SYRENFIGKYRSELHKRLTQWLFPIVFGLISILSIEKTSSLRHYRKVHPSLIALLLSFCV 240

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           F GFSYII  IEQ+P YIPILYLF F +SSI +L+IKKKY KI
Sbjct: 241 FSGFSYIIQGIEQSPSYIPILYLFFFVLSSILVLLIKKKYVKI 283


>gi|222085453|ref|YP_002543983.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722901|gb|ACM26057.1| permease protein [Agrobacterium radiobacter K84]
          Length = 391

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 232/366 (63%), Gaps = 13/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE YI+R +G  FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++PT+
Sbjct: 1   MKLFETYIVRRVGMMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATLILPTI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +++  G  R  +I+P++ LAI +S+F F  +N+
Sbjct: 61  IPVVLPFALVIGITQTLTAMNSDSELTVMEAAGARRSIIIRPIMILAIAISVFSFFVDNM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EPK R   +Q+ A+A   L  + +EE  F R++D LY++I++      L+G+F+VDSRD
Sbjct: 121 VEPKARVAARQMVAEAYADLLSTVIEEKNFRRIEDGLYVQITQRMSGRILKGLFVVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D    ++++ DGEVHRK+    D+S++KF SY+      T+S   +
Sbjct: 181 PAFDLIYYAKEGAVDASGSSLLMRDGEVHRKTS-DGDVSVIKFDSYSFDLSDMTQSRGQA 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV-AADK 295
           T  L+A D++L FLLNP+PN+ +Y+ +    YRSE H+RLT W  P IF LIS+V A D 
Sbjct: 240 T--LRAGDRSLGFLLNPDPNDADYKAK-PSGYRSELHRRLTDWALPAIFALISLVIAGDA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS--SIFLLM 353
           R+   +  ++HP+  +L+I+F + W   Y  ++IE  PY++ ILY      +  +IFLL 
Sbjct: 297 RS--HREARLHPMVSALTIAFALRWADFYAANQIETAPYFVGILYGINIAATLIAIFLLF 354

Query: 354 IKKKYT 359
             ++ +
Sbjct: 355 RNRRMS 360


>gi|190891136|ref|YP_001977678.1| permease [Rhizobium etli CIAT 652]
 gi|190696415|gb|ACE90500.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 403

 Score =  285 bits (729), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 231/366 (63%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILVRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      TES   +
Sbjct: 191 PAYELIYYAKEGAVDDSGTTLIMHDGEVHRKTP-DGNVSVINFDSYSFDLSDMTESRGQA 249

Query: 237 TIVLKANDQNLSFLLNPNPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAA 293
           T  LKA+D++L FL NP+PN+ +Y  RP   ++YR+E H+RLT W+ PV+F L S+ +A 
Sbjct: 250 T--LKASDRDLWFLFNPDPNDKDYTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAG 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFL 351
           D R+   +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY    +  I SI  
Sbjct: 305 DARS--HREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLYGLPIVSSIVSIIF 362

Query: 352 LMIKKK 357
           L + K+
Sbjct: 363 LSLHKR 368


>gi|86357092|ref|YP_468984.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281194|gb|ABC90257.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 393

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 141/366 (38%), Positives = 230/366 (62%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRTILVRPILLLAAVISVFSFFVDNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      TES   +
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTP-DGNVSVINFDSYSFDLSDMTESRGQA 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAA 293
           T  LKA+D++L FL NP+PN+ +Y  RP   ++YR+E H+RLT W+ PV+F L S+ +A 
Sbjct: 240 T--LKASDRDLWFLFNPDPNDKDYTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAG 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIFL 351
           D R+   +  ++HP+  +L  +F + W   Y  ++I+ +P YI +LY    +  I SI  
Sbjct: 295 DARS--HREARLHPMVSALGYAFALRWAAFYAANQIDTDPEYIAVLYALPIVSSIVSIIF 352

Query: 352 LMIKKK 357
           L + K+
Sbjct: 353 LGLHKR 358


>gi|209548671|ref|YP_002280588.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534427|gb|ACI54362.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 393

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 222/345 (64%), Gaps = 11/345 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+  L   + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTP-DGNVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
            L+A+D++L FLLNP+P + +Y  RP   ++YR+E H+RLT W+ PV+F L S+ +A D 
Sbjct: 240 TLRASDRDLWFLLNPDPADKDYTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAGDA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
           R+   +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY
Sbjct: 297 RS--HREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLY 339


>gi|241203949|ref|YP_002975045.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857839|gb|ACS55506.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 393

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 229/364 (62%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA  +S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAAISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+  L   + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTP-DGNVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
            L+A+D++L FL+NP+P + +Y  RP   ++YR+E H+RLT W+ PV+F L S+ +A D 
Sbjct: 240 TLRASDRDLWFLINPDPADKDYTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAGDA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFLLM 353
           R+   +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY    +  I SI  L 
Sbjct: 297 RS--HREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFLG 354

Query: 354 IKKK 357
           + K+
Sbjct: 355 LHKR 358


>gi|116251335|ref|YP_767173.1| hypothetical protein RL1569 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255983|emb|CAK07064.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 393

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 230/366 (62%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D     +I++ GEVHRK+P   ++S++ F SY+      TES   +
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHQGEVHRKTP-DGNVSVINFDSYSFDLSDMTESRGQA 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAA 293
           T  L+A+D++L FL NP+P + +Y  RP   ++YR+E H+RLT W+ PV+F L S+ +A 
Sbjct: 240 T--LRASDRDLWFLFNPDPADKDYTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAG 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFL 351
           D R+   +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY    +  I SI  
Sbjct: 295 DARS--HREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVF 352

Query: 352 LMIKKK 357
           L + K+
Sbjct: 353 LGLHKR 358


>gi|218672884|ref|ZP_03522553.1| putative permease protein [Rhizobium etli GR56]
          Length = 380

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 205/323 (63%), Gaps = 11/323 (3%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P+++P+V PF   +  T 
Sbjct: 3   FLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSIIPVVLPFALVIAITQ 62

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI+EP+ ++  +Q+ A+
Sbjct: 63  TLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNIVEPRAKTVARQMIAE 122

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
               L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD     IYYA+ G++D
Sbjct: 123 TYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERDPAYELIYYAKEGAVD 182

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNP 253
                +I++DGEVHRK+P   ++S++ F SY+  L   + N     LKA+D++L FL NP
Sbjct: 183 DTGTTLIMHDGEVHRKTP-DGNVSVINFDSYSFDLSDMTENRGQATLKASDRDLWFLFNP 241

Query: 254 NPNNPNY--RPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRALVRQRKKIHPIFI 310
           +PN+ ++  RP   ++YR+E H+RLT W+ PV+F L S+ +A D R+   +  ++HP+  
Sbjct: 242 DPNDKDFTIRP---QSYRAELHRRLTDWILPVVFALFSLAIAGDARS--HREARLHPMVS 296

Query: 311 SLSISFGVFWGFSYIIHKIEQNP 333
           +L+ +F   W   Y  ++I+ +P
Sbjct: 297 ALAYAFAFRWAAFYAANQIDTDP 319


>gi|15964907|ref|NP_385260.1| hypothetical protein SMc00584 [Sinorhizobium meliloti 1021]
 gi|307300977|ref|ZP_07580746.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317712|ref|ZP_07597150.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074086|emb|CAC45733.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896474|gb|EFN27222.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903932|gb|EFN34518.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 390

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 211/346 (60%), Gaps = 11/346 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALTNVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFAIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F ++ D LY+++        LQGIF+ D+RD
Sbjct: 121 VEPYSRVAVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLQGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                +YYA+ G++D +R A+++ DGEVHRK P   D+SI+KF SY       T  A  +
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLP-DGDVSIIKFDSYAFDLTDLTRMAGEA 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-IVAADK 295
            I  +A D++L +LL+P+P++  Y+   L  + +E H+R T+W FP++FGLI+ +V++D 
Sbjct: 240 NI--RAKDRDLFYLLDPDPDDEAYKRAPL-AFTAELHRRFTEWTFPLLFGLIALVVSSDA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           R+   +  ++HP+  +L  +  + W   Y  +  E + +++P++YL
Sbjct: 297 RS--HREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYL 340


>gi|227821476|ref|YP_002825446.1| putative permease protein [Sinorhizobium fredii NGR234]
 gi|227340475|gb|ACP24693.1| putative permease protein [Sinorhizobium fredii NGR234]
          Length = 390

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 217/346 (62%), Gaps = 11/346 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLLGIVWTTQALSNVNLVTDSGQSIFAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L+ MN ++EL +++  G+SR+++I+PV++LA+ LS+  F+ +N 
Sbjct: 61  VPIILPFALLIGVTQTLSVMNTDSELTVLNAAGSSRMSVIRPVIYLAVGLSVLSFVIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F R+ D LY++++       L GIF+ DSR+
Sbjct: 121 VEPYSRVAVRKMIATAHADLLSSVVQENAFRRITDGLYVQVAARRSGGVLHGIFVADSRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY----TLQTESANSS 236
                +YYA+ G++D +R A+++ DGEVHRK P    +S++KF SY    T  T +A  +
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLP-DGGVSVIKFDSYAFDLTDMTRTAGEA 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-IVAADK 295
           TI  +A D++L +L++P+PN+P+Y+   L  + +E H+RL++W +P++FGLI+ +V++D 
Sbjct: 240 TI--RAKDRDLFYLIDPDPNDPSYKRSPL-AFTAELHRRLSEWTYPLLFGLIALVVSSDA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           R+   +  ++HP   ++  +  + W   Y  +  E + +++P++YL
Sbjct: 297 RS--HREARVHPTISAVGAALVIRWMTFYAGNSAEDSIWFVPLMYL 340


>gi|150395989|ref|YP_001326456.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027504|gb|ABR59621.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 390

 Score =  251 bits (641), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 212/357 (59%), Gaps = 17/357 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALANVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFTIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R +++++ A A   L  S ++EN F ++ D LY+++        L GIF+ D+RD
Sbjct: 121 VEPYSRVSVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLHGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-------TLQTESA 233
                +YYA+ G++D  R A+++ DGEVHRK P   D+SI+KF SY       T  T  A
Sbjct: 181 PNFELVYYAREGAVDEGRSALVMKDGEVHRKLP-DGDVSIIKFDSYAFDLTDLTRMTGEA 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA- 292
           N     ++A D++L +LL+P+P++  Y+      + +E H+R T+W FP++FGLI++VA 
Sbjct: 240 N-----IRAKDRDLFYLLDPDPDDEAYK-RAPRAFAAELHRRFTEWTFPLLFGLIALVAS 293

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +D R+   +  ++HP+  +L  +  + W   Y  +  E + +++P++YL      ++
Sbjct: 294 SDARS--HREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLIPLATGAL 348


>gi|15888448|ref|NP_354129.1| hypothetical protein Atu1108 [Agrobacterium tumefaciens str. C58]
 gi|15156140|gb|AAK86914.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 389

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/364 (38%), Positives = 220/364 (60%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T + T+MN ++EL IID  G  R  + +PVL LA +LS+F F   N 
Sbjct: 61  IPVVLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++      L+G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRTIQDGLYVQIAQRQ-GRILKGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESA-NSST 237
                IYYA+ G ID    ++ + DGEV +K+P  K +SI+KF SY   L T S    S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDGK-VSIVKFLSYAFDLSTMSEKQDSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKR 296
             L   D +L FLL+P+ NN +Y+    ET+RSE HKRL+ W+F   F LIS+ +AAD R
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPETFRSELHKRLSDWMFAFSFALISLAIAADSR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
           +   +  ++HP+  +L  +F + W GF Y+ ++++Q+  +IP++Y    L   ++ F+LM
Sbjct: 298 S--HREARLHPMVAALVTAFMLRWLGF-YVTNQVKQSAAFIPLVYAVPGLSGAAAAFVLM 354

Query: 354 IKKK 357
             +K
Sbjct: 355 TGRK 358


>gi|222148153|ref|YP_002549110.1| hypothetical protein Avi_1543 [Agrobacterium vitis S4]
 gi|221735141|gb|ACM36104.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 399

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 217/362 (59%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR + + FL + L ++ I W  Q+L RINLV+ + +S+     ++  ++PT+
Sbjct: 6   MKLLESYILRRVAQMFLTALLPVLAIIWTTQVLARINLVTDTGQSIGSFATLATLILPTI 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G SR  +++P+L  A+ +S+   +  N 
Sbjct: 66  IPIVMPFALVIGITQSLTAMNNDSELAVIDAAGASRAVILRPILLFALAISVITLVITNE 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++PK +   +Q+ A A   L  + +EE  F +++D LY++IS+      L+G+F+ D RD
Sbjct: 126 VQPKVKVAARQMIANAYADLLSTVIEEKTFRKVEDGLYVQISQRLAGRVLKGLFVADYRD 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D    A+I++DGEV RK+P    +SI++F SY       TE+   +
Sbjct: 186 PAYSLIYYAREGAVDETGTALIMHDGEVQRKAP-GGTVSIVRFDSYAFDLSDLTETRGKA 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
              ++ +D++LSFLLNP+ N+ +Y+    E YR+E HKR+T+WL P  F LIS+ +A D 
Sbjct: 245 K--MRPSDRSLSFLLNPDTNDDDYKDHPGE-YRAELHKRMTEWLLPFAFALISLAIAGDA 301

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R+   +  ++HP+  +L+++  + W   Y  +K E N  +I ++Y      ++I  LM+ 
Sbjct: 302 RS--HREARLHPMVSALTLALVLRWLTFYAANKSESNAAFIVLMYATPLASAAIATLMLM 359

Query: 356 KK 357
           ++
Sbjct: 360 RQ 361


>gi|325292487|ref|YP_004278351.1| permease protein [Agrobacterium sp. H13-3]
 gi|325060340|gb|ADY64031.1| putative permease protein [Agrobacterium sp. H13-3]
          Length = 389

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 220/364 (60%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T   T+MN ++EL IID  G+SR  + +PV+ LA +LS   F   N 
Sbjct: 61  IPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRPVIILAAVLSALSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++      L+G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDGLYVQIAQRQ-GRILKGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESA-NSST 237
                IYYA+ G ID    ++ + DGEV +K+P  K +SI+KF SY   L T S   +S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPDGK-VSIVKFLSYAFDLSTMSEKQTSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV-AADKR 296
             L   D +L FLL+P+ NN +Y+    E++RSE HKRL+ W+F   F LIS+V AAD R
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPESFRSELHKRLSDWMFAFAFALISLVIAADAR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLF--LFCISSIFLLM 353
           +   +  ++HP+  +L  +F + W GF Y+ ++++Q+  +IP++Y    L   ++ F+L+
Sbjct: 298 S--HREARMHPMVAALVTAFMLRWLGF-YVTNQVKQSAAFIPLVYAVPGLSGAAAAFILI 354

Query: 354 IKKK 357
             +K
Sbjct: 355 TGRK 358


>gi|254718823|ref|ZP_05180634.1| hypothetical protein Bru83_04675 [Brucella sp. 83/13]
 gi|265983808|ref|ZP_06096543.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306838745|ref|ZP_07471579.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
 gi|264662400|gb|EEZ32661.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306406147|gb|EFM62392.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
          Length = 402

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 214/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|23501574|ref|NP_697701.1| hypothetical protein BR0687 [Brucella suis 1330]
 gi|254701470|ref|ZP_05163298.1| hypothetical protein Bsuib55_11511 [Brucella suis bv. 5 str. 513]
 gi|254704017|ref|ZP_05165845.1| hypothetical protein Bsuib36_08829 [Brucella suis bv. 3 str. 686]
 gi|256060812|ref|ZP_05450972.1| hypothetical protein Bneo5_10667 [Brucella neotomae 5K33]
 gi|261324804|ref|ZP_05964001.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261752013|ref|ZP_05995722.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261754672|ref|ZP_05998381.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306845288|ref|ZP_07477864.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
 gi|23347487|gb|AAN29616.1| membrane protein, putative [Brucella suis 1330]
 gi|261300784|gb|EEY04281.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261741766|gb|EEY29692.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261744425|gb|EEY32351.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306274447|gb|EFM56254.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
          Length = 402

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 214/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|161618656|ref|YP_001592543.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260566734|ref|ZP_05837204.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|161335467|gb|ABX61772.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260156252|gb|EEW91332.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
          Length = 402

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 214/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFVLIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|256369122|ref|YP_003106630.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|255999282|gb|ACU47681.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
          Length = 402

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 214/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFTMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|163842957|ref|YP_001627361.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|163673680|gb|ABY37791.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
          Length = 402

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 214/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +++LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVRVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|153009928|ref|YP_001371143.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561816|gb|ABS15314.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 402

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 205/346 (59%), Gaps = 8/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIIQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY   L   ++   
Sbjct: 181 PSLDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV-AADK 295
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A D 
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPLR-YKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           R+   +  ++   F ++S +  V+W   +   + +++  YI ++YL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVVMYL 343


>gi|239831521|ref|ZP_04679850.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823788|gb|EEQ95356.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 402

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 205/346 (59%), Gaps = 8/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY   L   ++   
Sbjct: 181 PALDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV-AADK 295
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A D 
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPLR-YKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           R+   +  ++   F ++S +  V+W   +   + +++  YI ++YL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVLMYL 343


>gi|62289649|ref|YP_221442.1| hypothetical protein BruAb1_0706 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699577|ref|YP_414151.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
 gi|189023899|ref|YP_001934667.1| permease [Brucella abortus S19]
 gi|237815139|ref|ZP_04594137.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254688959|ref|ZP_05152213.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
           str. 870]
 gi|254697093|ref|ZP_05158921.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729989|ref|ZP_05188567.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
           str. 292]
 gi|256257207|ref|ZP_05462743.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
           str. C68]
 gi|260545599|ref|ZP_05821340.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260754448|ref|ZP_05866796.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260757667|ref|ZP_05870015.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260761494|ref|ZP_05873837.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883477|ref|ZP_05895091.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297248057|ref|ZP_06931775.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
 gi|62195781|gb|AAX74081.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615678|emb|CAJ10665.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
           Abortus 2308]
 gi|189019471|gb|ACD72193.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
 gi|237789976|gb|EEP64186.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|260097006|gb|EEW80881.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260667985|gb|EEX54925.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260671926|gb|EEX58747.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674556|gb|EEX61377.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260873005|gb|EEX80074.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297175226|gb|EFH34573.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
          Length = 402

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 213/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|254693441|ref|ZP_05155269.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 3
           str. Tulya]
 gi|261213694|ref|ZP_05927975.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915301|gb|EEX82162.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 402

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 213/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAFMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|148559016|ref|YP_001258669.1| hypothetical protein BOV_0679 [Brucella ovis ATCC 25840]
 gi|254707609|ref|ZP_05169437.1| hypothetical protein BpinM_11726 [Brucella pinnipedialis
           M163/99/10]
 gi|254709808|ref|ZP_05171619.1| hypothetical protein BpinB_05961 [Brucella pinnipedialis B2/94]
 gi|256031299|ref|ZP_05444913.1| hypothetical protein BpinM2_11718 [Brucella pinnipedialis
           M292/94/1]
 gi|256159413|ref|ZP_05457191.1| hypothetical protein BcetM4_10693 [Brucella ceti M490/95/1]
 gi|256254707|ref|ZP_05460243.1| hypothetical protein BcetB_10510 [Brucella ceti B1/94]
 gi|261221887|ref|ZP_05936168.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261315099|ref|ZP_05954296.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317346|ref|ZP_05956543.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|265988384|ref|ZP_06100941.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|265997850|ref|ZP_06110407.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|148370273|gb|ABQ60252.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|260920471|gb|EEX87124.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261296569|gb|EEY00066.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261304125|gb|EEY07622.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|262552318|gb|EEZ08308.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|264660581|gb|EEZ30842.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
          Length = 402

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 213/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|294852049|ref|ZP_06792722.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
 gi|294820638|gb|EFG37637.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
          Length = 402

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 213/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASMPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|254713812|ref|ZP_05175623.1| hypothetical protein BcetM6_10745 [Brucella ceti M644/93/1]
 gi|254717130|ref|ZP_05178941.1| hypothetical protein BcetM_12054 [Brucella ceti M13/05/1]
 gi|261218945|ref|ZP_05933226.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261321556|ref|ZP_05960753.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
 gi|260924034|gb|EEX90602.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261294246|gb|EEX97742.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
          Length = 402

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 212/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R   ++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAAMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|319404056|emb|CBI77644.1| putative permease, YjgP/YjgQ family [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 382

 Score =  226 bits (575), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/362 (36%), Positives = 206/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FELYIL+ I   F    L  V I+W +QIL R+N ++++ ++   +L  S  LIP+V
Sbjct: 1   MRIFELYILKRIFILFSAVLLGAVGISWTVQILARVNFLTTNGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L +MN+++EL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLIMPFALVVAITTILLTMNQDSELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNP++P+Y+ + L+ YR+E H+R T+ L+P++F LI+I  A   
Sbjct: 241 TPNIYPKDRPLSYLFNPNPSDPHYQRKPLQ-YRAELHRRFTECLYPIVFALIAIAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ  +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+ K
Sbjct: 300 HSYRQ-ARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYVIPIGISLLTFFMLLK 358

Query: 357 KY 358
            Y
Sbjct: 359 DY 360


>gi|319405494|emb|CBI79113.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 382

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 203/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVMLGAIGISWTVQILARINFLTTSGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN++TEL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLVIPFALVIAITIILSTMNQDTELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A A   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQMLANAHSDLISLFIREGSFQELAKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF SYT        N  
Sbjct: 181 HQLGLFYYAAKGAIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSYTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NP+PN+P+Y+ +  + YR+EFH+R T+ L+P++F LI+IV     
Sbjct: 241 TPNIYPKDRPLSYLSNPSPNDPHYQRKPFQ-YRAEFHRRFTECLYPIVFALIAIVIVGNA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ   I   F +++ S  ++W   +   K E NP YIP+LY+    I S+   M+
Sbjct: 300 RSYRQ-AHIFETFSTITFSLLIYWLGYFFAQKAENNPSYIPLLYIIPIGICSLTFFML 356


>gi|225627184|ref|ZP_03785222.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|260168438|ref|ZP_05755249.1| hypothetical protein BruF5_08728 [Brucella sp. F5/99]
 gi|261757900|ref|ZP_06001609.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|225618019|gb|EEH15063.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|261737884|gb|EEY25880.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
          Length = 402

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 213/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDF 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|163868028|ref|YP_001609232.1| hypothetical protein Btr_0827 [Bartonella tribocorum CIP 105476]
 gi|161017679|emb|CAK01237.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 396

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 210/347 (60%), Gaps = 10/347 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFI--VFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           M+  E YIL+ +   FL S + I  V ++W +QIL RIN +++S ++L  +L+ S  L+P
Sbjct: 1   MRIIEFYILKRV--FFLFSSVLIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVP 58

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +V+ +V PF   +  T  L++MN+ +EL +I+ +G  + T+ KPVL LAI+ S   F   
Sbjct: 59  SVIFLVIPFALVIAVTTTLSAMNQESELAVINASGFPKSTVWKPVLLLAIVASCISFSIA 118

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           N + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D 
Sbjct: 119 NFVVPQARLHMRQMLASAHFDLINLFISEGSFQKLANNLYIEIGERNPNGTLERLFIADQ 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--AN 234
           RD +T   YYA   SI  ++    +ILN+GE+ R +  +  +SI++F +YT        +
Sbjct: 179 RDPKTDLFYYATKASIVSNKNGRFLILNNGEIERVNHENNSVSIVQFSAYTFSLGEFIPS 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             T  L   D++LS+L NP+P +P Y+ + L+ Y++EFH+RLTQWL+P++F LI++ AA 
Sbjct: 239 DKTPTLYPKDRSLSYLQNPDPKDPYYQRKPLQ-YKAEFHRRLTQWLYPIVFSLIALAAAG 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
                RQ +     F ++++SF V+W   +   K + +  Y+P+LY+
Sbjct: 298 NVGSHRQARYCAN-FSAIALSFLVYWIGYFFAEKAKNDLAYVPLLYI 343


>gi|17987545|ref|NP_540179.1| hypothetical protein BMEI1262 [Brucella melitensis bv. 1 str. 16M]
 gi|225852207|ref|YP_002732440.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|256044380|ref|ZP_05447284.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113223|ref|ZP_05454091.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264285|ref|ZP_05466817.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563732|ref|ZP_05834218.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990798|ref|ZP_06103355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994634|ref|ZP_06107191.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983248|gb|AAL52443.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
           str. 16M]
 gi|225640572|gb|ACO00486.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|260153748|gb|EEW88840.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765747|gb|EEZ11536.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001582|gb|EEZ14157.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094545|gb|EEZ18354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 402

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 212/364 (58%), Gaps = 11/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI+I++   + ++ G+FI DS D
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY   L   ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++ +A D 
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLL 352
           R+   +  ++   F ++S +  V+W   +   + +++P YI ++Y   L +F ++   LL
Sbjct: 300 RS--HREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILL 357

Query: 353 MIKK 356
             ++
Sbjct: 358 TGRR 361


>gi|240850232|ref|YP_002971625.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
 gi|240267355|gb|ACS50943.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
          Length = 396

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 212/358 (59%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YIL+ +   F    +  V ++W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIEFYILKRVLVLFSSVMIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T +L++M++++EL +I+ +G  + T+ KP+L LAI+ S   F   N 
Sbjct: 61  VFLVIPFALVIAITTILSAMHQDSELAVINASGFPKSTVWKPILLLAIVASCISFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D RD
Sbjct: 121 VVPQARLHMRQMLASAHFDLINLFINEGSFQKLANNLYIEIGERNPNGTLERLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   YYA   SI  ++    ++LN+GE+ R +  +  +SI++F SYT        +  
Sbjct: 181 PKTDLFYYATDASIVSNKNGSFLVLNNGEIERVNHQNNSVSIVQFSSYTFSLGEFIPSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   D++LS+L NP+P +P Y+ + L+ Y++EFH+RLTQWL+P++F LI++ AA   
Sbjct: 241 APTLYPKDRSLSYLQNPDPKDPYYQRKPLQ-YKAEFHRRLTQWLYPIVFSLIALAAAGDV 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F ++++SF V+W   +   K + +  YIP+LY+     S+    M+
Sbjct: 300 CSHRQARH-SANFSAIALSFLVYWIGYFFAEKAKNDLAYIPLLYIMPIGTSAFVFFML 356


>gi|319898731|ref|YP_004158824.1| permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
 gi|319402695|emb|CBI76241.1| putative permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
          Length = 385

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 207/359 (57%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFLLFSAVMIGAIGISWTVQILARINFLTTSGQTFLTVLHFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN+++EL +I  +G  +  + KP+L LAIL S+  F   N 
Sbjct: 61  TSLVMPFGLVIAITIILSTMNQDSELAVISASGIPKNIIWKPILLLAILTSLTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A     L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPNARLNMRQMLANTHSDLINLFIREGSFQELTKNLYIEIGETNTNGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA+ G I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 RQFGLFYYAKKGIIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFITNKR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
           T  +   D+ LS+L NP+PN+P+Y+ + L+ YR+EFH+RLT+ L+P++F LI++ +A D 
Sbjct: 241 TPNIYPKDRPLSYLSNPDPNDPHYQRKPLQ-YRAEFHRRLTECLYPIVFALIAVAIAGDA 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R+   ++  I   F  +S S  ++W   +   K E NP YIP+LY+    IS +   M+
Sbjct: 300 RSY--RQTHISSTFSVISFSLLIYWLGYFFAKKTENNPVYIPLLYIIPIGISILTFFML 356


>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
 gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
          Length = 400

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 219/366 (59%), Gaps = 13/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     FL + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFLAALVWTLAIVWTTQVLAKIDLVTDSGQSSLTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL++++  G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAQSRADLLSLIIQEGTFRKIEDGLFLQIGERLPDNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANS 235
              + +YYA++GS+ ++R   + +++NDG +HRK+ ++ D+S+++F SY     +  A +
Sbjct: 181 EGVNLVYYAKTGSV-VERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAA 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
           S + L   DQ   +LLNPN N+  Y+ +  + YR+E  +R ++WL+ ++F LI++ VA D
Sbjct: 239 SEVTLLPKDQTTQYLLNPNVNDKLYQ-QAPQQYRAEIDQRFSEWLYSMVFALIALAVAGD 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R+   +  +++P+  +++IS  V W GF +   K ++ P Y  ++Y      S++ +  
Sbjct: 298 ARS--HREARVNPLITAITISLFVRWLGF-FAASKADEVPQYAYMVYGVPIVASAVAIWF 354

Query: 354 IKKKYT 359
           I    T
Sbjct: 355 IVSNRT 360


>gi|319407069|emb|CBI80706.1| putative permease, YjgP/YjgQ family [Bartonella sp. 1-1C]
          Length = 382

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 203/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  V I+W +QIL RIN ++++ ++   ++  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVLLGAVGISWTVQILARINFLTTNGQTFLTIVYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L++MN+++EL +I  +G S+  + KP+L LA+L S   F   N 
Sbjct: 61  TSLIIPFALVVAITTILSTMNQDSELAVISASGISKNIVWKPILLLAVLASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNPN+ +Y+ + L+ YR+E H+R T+ L+P++F LI I  A   
Sbjct: 241 TPNIYPKDRPLSYLFNPNPNDSHYQRKPLQ-YRAELHRRFTECLYPIVFALIVIAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ  +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+  
Sbjct: 300 HSYRQ-ARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYIIPIGISLLIFFMLLT 358

Query: 357 KY 358
            Y
Sbjct: 359 DY 360


>gi|121602513|ref|YP_988823.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
 gi|120614690|gb|ABM45291.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
           KC583]
          Length = 396

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 205/363 (56%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F       V I W +QIL RIN +++S ++    L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVITATVCIIWTVQILARINFLTTSGQTFLTALYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +     L+ MN+++EL II  +G  + T+ KP+LFLAIL S   F   N 
Sbjct: 61  ISLVIPFALMIAIITTLSRMNQDSELTIISASGIPKTTIWKPILFLAILASCASFFITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++++ A A   L   ++ E  F +L ++LYI I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLHMREMLASAHSDLINLFIHEGSFQKLTNNLYIGIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +   +YYA  G+I  ++    ++LN+GE+ R +  +  +SI+KF SYT        N  
Sbjct: 181 PKIDLLYYATKGAIVSNKSGNILVLNNGEIKRLNHQNDSVSIIKFSSYTFNLSEFIPNDR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +   D+ LS+L  P+P++PNY+ + L+ Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 IPTIYPKDRPLSYLYRPDPDDPNYQRQPLQ-YKAEFHRRLTEWLYPIVFALIAVAAAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMI 354
              RQ  +I   F ++  S  ++    + + K E N  YIP+LY+     S +  F L+I
Sbjct: 300 RSYRQ-ARISTTFFAIIFSLLIYLVRYFFVEKTENNLAYIPLLYITPLGTSILIFFRLLI 358

Query: 355 KKK 357
            +K
Sbjct: 359 NRK 361


>gi|49474101|ref|YP_032143.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
 gi|49239605|emb|CAF25962.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
          Length = 396

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 210/359 (58%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAISISWTVQILARINFLTTSRQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II   G  + T+ KP+L LA++ S   F+  N 
Sbjct: 61  IFLVIPFALVIAITSTLSAMNQDSELAIISAAGFPKSTVWKPILLLALIASCASFLIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VAPQARFHMRQMLANAHSDLINLFINEGSFQKLANNLYIEIGERNPDGTLGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   SI  ++    ++LN+GE+ R +  +  +SI++F  YT        N  
Sbjct: 181 PKIDFFYYATKASIVSNKSGNFLVLNNGEIERINHQNDSVSIVQFSFYTFSLSEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DK 295
           T  +   D+ LS+LLNP+P +P Y+   L+ YR+EFH+RLT+WL+ ++F LI++ AA D 
Sbjct: 241 TPTIYPKDRPLSYLLNPDPKDPYYQRRPLQ-YRAEFHRRLTEWLYSIVFSLIALAAARDA 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R+  + R   +  F +++ S  V+W   +   K + +  Y+P+LY+    +S +   M+
Sbjct: 300 RSYRKTRNFAN--FSAIAFSLLVYWIGHFFAEKAKSDLAYVPLLYITPIGVSILVFFML 356


>gi|326408706|gb|ADZ65771.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
 gi|326538430|gb|ADZ86645.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
          Length = 388

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 202/341 (59%), Gaps = 11/341 (3%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           V I W +Q+LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T  L++MN++
Sbjct: 10  VGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQD 69

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +EL++I+ +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A A   L   
Sbjct: 70  SELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHV 129

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--I 201
            ++E  F +L D+LYI+I++   + ++ G+FI DS D     IYYA  G+I        +
Sbjct: 130 IIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLDLIYYAADGAIASTPSGDML 189

Query: 202 ILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
           ++ +GEV R++     +SI+KF SY   L   ++     V+ A D+ L++LLNP+ N+P 
Sbjct: 190 LMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDSNDPM 249

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRALVRQRKKIHPIFISLSISFGV 318
            +   L TY++E H+R TQW++P+IF +I++ +A D R+   +  ++   F ++S +  V
Sbjct: 250 LQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDSRS--HREARVSASFSAISTALLV 306

Query: 319 FWGFSYIIHKIEQNPYYIPILY---LFLFCISSIFLLMIKK 356
           +W   +   + +++P YI ++Y   L +F ++   LL  ++
Sbjct: 307 YWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFILLTGRR 347


>gi|260466946|ref|ZP_05813128.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029243|gb|EEW30537.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 400

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 217/366 (59%), Gaps = 13/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MTVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVASLILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++ +G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNASGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAESRSDLLSLIIQEGTFRKIEDGLFLQIGERLPDNKLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANS 235
              + +YYA++GSI ++R   + +++NDG +HRK+ ++ D+S+++F SY     +  + +
Sbjct: 181 EGVNLVYYAKTGSI-IERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMSAA 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
           + + L   DQ   +LLNP+ N+ NY+    E YR+E  +R ++W + ++F LI++ VA D
Sbjct: 239 NQVTLLPKDQTTQYLLNPSANDKNYQQNPQE-YRAEIDQRFSEWTYSMVFALIALAVAGD 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R+   +  +++P+  +++IS  V W GF +   K ++ P Y  ++Y      S++ +  
Sbjct: 298 ARS--HREARVNPLITAIAISLFVRWLGF-FAASKADEIPQYGYMVYGVPIVASAVAIWF 354

Query: 354 IKKKYT 359
           I    T
Sbjct: 355 IVSNRT 360


>gi|319784423|ref|YP_004143899.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170311|gb|ADV13849.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 400

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 215/366 (58%), Gaps = 13/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++  G SR T+++P++ LA+  ++F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNAAGASRWTIVRPIMLLALAAAVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A ++  L    ++E  F ++DD L++++ +  PNN L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVASSRADLLSLIIQEGTFRKIDDGLFLQVGERLPNNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESANS 235
              + +YYA++GSI ++R   + +++NDG +HRK+ ++ D+S+++F SY        A +
Sbjct: 181 EGVNLVYYAKTGSI-IERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAA 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
           S + L   DQ   +LLNP+ N+  Y+    E YR+E ++R ++W + ++F LI++ VA D
Sbjct: 239 SAVTLLPKDQTTQYLLNPSANDKYYQQSPYE-YRAEVNQRFSEWTYSMVFALIALAVAGD 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R+   +  +++P+  +++IS  V W GF +   K ++ P Y  ++Y      S++ +  
Sbjct: 298 ARS--HREARVNPLITAITISLFVRWLGF-FAASKADEIPQYAYMVYGVPIVASAVAIWF 354

Query: 354 IKKKYT 359
           I    T
Sbjct: 355 IVSNRT 360


>gi|49475339|ref|YP_033380.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
 gi|49238145|emb|CAF27353.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
          Length = 396

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 206/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAIGISWTVQILARINFLTTSKQTLLTILQFSISLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II  +G  + T+ +P+L +A + S   F   N 
Sbjct: 61  IFLVIPFALLIAITSTLSAMNQDSELAIISASGFPKSTVWRPILLIAFVASCASFFIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VIPQARLNMRQMLATTHYDLINLFISEGSFQKLANNLYIEIGQRNPDGTLAHLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   S+  ++    ++LN+GE+ R +  +  +SI++F SYT        N  
Sbjct: 181 PKIDLFYYATKASVVSNKNGHFLVLNNGEIERINHQNDSVSIVQFSSYTFSLGEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L   D+ LS+L NPNP +  Y+ + L+ YR+EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 TPTLYPKDRPLSYLRNPNPKDLYYQRKPLQ-YRAEFHRRLTEWLYPIVFSLIALAAAGDT 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ       F +++ SF V+W   +   K + +  Y+P+LY+    +S +   M+
Sbjct: 300 RSYRQVGN-SANFSAIAFSFLVYWIGYFAAEKAKSDLAYVPLLYIIPIGVSILVFFML 356


>gi|319408320|emb|CBI81973.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 396

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 212/365 (58%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ +   F    +  + I+  +Q+L RI+ +++S ++   +L  S  L+P V
Sbjct: 1   MRIIELYILKRVFILFSAVMVAAIGISLTVQVLARIDFLTTSGQTFLTVLYFSSLLVPPV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF   +  T +L++MN+++EL II  +G S+ T++KP+L LAI  +   F   N 
Sbjct: 61  ISLIIPFALVIAITTILSTMNQDSELAIISASGFSKNTVLKPILLLAIFTACTSFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F  L ++LYI+I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLNMRQMLANTHSDLINLFIREGSFQALTNNLYIEIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
           ++   +YYA+ G+I  ++    ++LNDGE+ R +  +  +SI+KF SYT        N+ 
Sbjct: 181 SKIDLLYYAKKGAIVSNKNGNFLVLNDGEIERVNYQNDSVSIIKFNSYTFSLSEFIPNNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +   D+ LS+LL+P+P +P Y+   L+ Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 VPTIYPKDRPLSYLLHPDPYDPYYQRNPLQ-YKAEFHRRLTEWLYPIVFALIAVAAAGD- 298

Query: 297 ALVRQRKKIHPIFISLSISFG--VFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLL 352
              R  ++ H   I  +I+F   ++W   +   K + +  Y+P+LY+    +S +  F+L
Sbjct: 299 --ARSHRQAHTSAIVFTITFSLLIYWIEYFFAEKTKNDLTYVPLLYITPIGVSVLIFFML 356

Query: 353 MIKKK 357
           +  +K
Sbjct: 357 LTNRK 361


>gi|306842048|ref|ZP_07474721.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
 gi|306287889|gb|EFM59309.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
          Length = 371

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 198/333 (59%), Gaps = 11/333 (3%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T  L++MN+++EL++I+ 
Sbjct: 1   MLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQDSELVVINA 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A A   L    ++E  F 
Sbjct: 61  SGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHVIIQEGTFR 120

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVH 209
           +L D+LYI++++   + ++ G+FI DSRD     IYYA  G+I        +++ +GEV 
Sbjct: 121 KLADNLYIQVAERRADGSIGGLFIADSRDPTLDLIYYAADGAIASTPSGDMLLMENGEVQ 180

Query: 210 RKSPISKDISIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
           R++     +SI+KF SY   L   ++     V+ A D+ L++LLNP+PN+P  +   L T
Sbjct: 181 RRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDPNDPMLQTRPL-T 239

Query: 268 YRSEFHKRLTQWLFPVIFGLISI-VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
           YR+E H+R TQW++P+IF +I++ +A D R+   +  ++   F ++S +  V+W   +  
Sbjct: 240 YRAELHRRFTQWIYPLIFAMIALAIAGDSRS--HREARVSASFSAISTALLVYWAGYFAS 297

Query: 327 HKIEQNPYYIPILY---LFLFCISSIFLLMIKK 356
            + +++  YI ++Y   L +F ++   LL  ++
Sbjct: 298 DRADKDSSYILVMYLVPLVVFLVTGFILLTGRR 330


>gi|218459006|ref|ZP_03499097.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 250

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 153/241 (63%), Gaps = 5/241 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TESANSS 236
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      TES   +
Sbjct: 191 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTP-DGNVSVINFDSYSFDLSDMTESRGQA 249

Query: 237 T 237
           T
Sbjct: 250 T 250


>gi|110634108|ref|YP_674316.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285092|gb|ABG63151.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 416

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR     F  S  +++ I W  Q+L R++LV+SS +S      ++   +P+V
Sbjct: 24  MKVIERYILRRTLAIFAASLAWLLVIVWTTQVLNRLDLVTSSGQSAATFFTVAFLTLPSV 83

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +     L +MN ++EL++I   G+ R T+I P+L +AI+ SI  F   N 
Sbjct: 84  VPVIMPFVIGIAVAQTLATMNADSELVVISAAGSPRSTIIWPILIIAIIASIAAFAINNT 143

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L  + L E  F ++ D ++++IS+  PN  L GIF++DSRD
Sbjct: 144 LEPYSRQKMRTILANANADLITTVLREGSFRKVVDGIFVQISERLPNGELGGIFVIDSRD 203

Query: 181 TQTHKIYYAQSGS-IDLDRQAI-ILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                 Y A+ G+ +  D   I +L +GEV R+   + D+S+++F SY    ++  N   
Sbjct: 204 PNLKLAYRAERGATVKRDGGNILVLLEGEVQRQV-ANGDVSVIRFDSYAFDLSQFTNGEG 262

Query: 238 I-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
           +  L   D+ LS LL P+PN+  +  +  +++R+E H R ++WL+P++F LI I VA D 
Sbjct: 263 VPTLFPKDRYLSELLEPDPND-KFFAKNPQSFRAELHTRFSEWLYPIVFALIGIAVAGDA 321

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
           R+   +  ++HP+  +L+I   V W   Y  ++ E  P Y  +LY
Sbjct: 322 RSF--RETRLHPMVTTLTIGLLVRWAGFYASNEAETVPAYTYLLY 364


>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
 gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
          Length = 385

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 178/347 (51%), Gaps = 22/347 (6%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+L R+++++++ ++    + ++  +IP+V+ +V PF   +  + VL+ MN ++EL++I+
Sbjct: 20  QVLIRVDVLTTTGQAFGAFMLLAATIIPSVISVVAPFALLIGVSQVLSGMNSDSELVVIE 79

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
             G    T+++PV+ L++ LSI + +  N +EP     +  + A+AQ  L    +    F
Sbjct: 80  AAGARPATVLRPVMALSVALSIMVLLVANFVEPWSNRKLYDVLAQAQSDLFSVAVRSGTF 139

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEV 208
            +L+D LY+++++  P   L GIF+ D+R   T  IYYA+SG I  + D   ++L DGE+
Sbjct: 140 MKLEDGLYVQVNEKLPGGALSGIFLSDTRTDGTEAIYYAKSGVIQPEGDTNILLLLDGEL 199

Query: 209 HRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
            ++   +  ISI+ F SY L   +          +  +Q+  +LL P P++  Y      
Sbjct: 200 QQRDTSNDQISIVTFSSYALDMAAFVPAGQNAARRPKEQSTGYLLAP-PSDDYYAGNAPY 258

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF-SYI 325
             + E  +R + WL+P+ FGLI+        L + R   H  F + ++  G+  G   + 
Sbjct: 259 IIKEELVQRFSTWLYPLAFGLIAFA-----FLGKARSNRHEQFQNGALVAGIALGARGFG 313

Query: 326 IHKIEQNP---------YYIPILYLFLFCISSI--FLLMIKKKYTKI 361
            + +E+           Y +P + + LF   ++    L I K + ++
Sbjct: 314 FYSVEEAGASSAMEVLSYLVPGMLIVLFGALAVTGHTLTIPKAWARL 360


>gi|220925665|ref|YP_002500967.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
 gi|219950272|gb|ACL60664.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
          Length = 388

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 154/307 (50%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++L+++  ++L I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALSAFLACLAGLTGVIWVTQALRELDLITAKGQTLLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++ + +      
Sbjct: 61  LTIVAPVALFMAVLHALNRLNGDSELIVMSAAGMSPRHLMRPFLTLALIVGLAVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD  +     +  P  TL GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDSGITFHFRERGPGGTLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                +Y A+ G ++DLD Q  ++L  G +HR+ P S+D SI+ F  Y   L   +   +
Sbjct: 181 AGRSVVYLAERGQAVDLDGQTYLVLEKGSIHRQQPNSRDASIITFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN  +Y   +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNE-HYYKLVKGRFRAELHDRLTAWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|170743203|ref|YP_001771858.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
 gi|168197477|gb|ACA19424.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
          Length = 388

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++LV++  +++ I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALGAFLACLAGLTGVIWVTQALRELDLVTAKGQTVLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++S  L      
Sbjct: 61  LTVVAPVALFMAVVHALNRLNGDSELIVMSAAGMSPRQLLRPFLTLALIVSAALGFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD+ +     +  P   L GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDNGITFHFRESAPGGVLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                 Y A+ G ++DLD Q  ++L  G +HR+   S+D SI+ F  Y   L   +   +
Sbjct: 181 AGRSVTYLAERGQALDLDGQTYLVLEKGSIHRQQQNSRDASIISFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN  +Y   +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNE-HYYKLVKGRFRAELHDRLTSWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|328544011|ref|YP_004304120.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
 gi|326413755|gb|ADZ70818.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
          Length = 395

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 157/293 (53%), Gaps = 7/293 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R  G +F+M+   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTLERYIVRRAGIAFVMTLAAMTGVVWATQALRQLDLVTSKGQTIVQFVGITMLAMPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL +++ ++EL++I+ +G SR  +++PV+  +  + +        
Sbjct: 61  VLVVAPFALMIALILVLNALSSDSELIVINASGGSRFLVLRPVVLFSAAIMLLSATLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+ ++ L  + +    F  ++D L   I     + +L G+ + D RD
Sbjct: 121 VAPLGLAQLRDEIARVRVDLVANIVRPGRFITVEDGLTFHIRNRRGDGSLDGLLLHDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            QT   Y A  G I    DR  +++ DG + R+     DISI++F+SY     +    +S
Sbjct: 181 PQTVFTYQADVGRIVEAADRTLLLMQDGTIQRRPKTDGDISIVRFQSYAFDLSALIPETS 240

Query: 237 TIVLKANDQ-NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           T + KA+++  L+ LL  + +  +Y  +  +  R+E H RL+Q L+P+ FGLI
Sbjct: 241 TPIYKASERPTLALLLGTHQD--DYARQNADRLRAELHDRLSQPLYPLAFGLI 291


>gi|170746990|ref|YP_001753250.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653512|gb|ACB22567.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 386

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLF-IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  E YI R I     ++CL  +    W+ Q L+ ++LV++  ++L + L ++G  +PT
Sbjct: 1   MRQIERYIFR-IALGATLACLIGLTGTIWLTQALRELDLVTAKGQTLLVFLFVTGLSLPT 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++ P    + T   L  +N ++EL+++   G    +L++P L LA+ +S  +     
Sbjct: 60  LVVVIAPVALFIGTIYALNKLNGDSELIVMSAAGMPPRSLLRPFLTLALFVSFLVGFLVV 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++ P     ++ +  + +     + ++E  F +LD+ +     +  P  TL+G+FI D R
Sbjct: 120 VVMPASFQELRDVITRVRGDFIANVVKEGQFTQLDNGITFHFRERGPGGTLKGLFIQDRR 179

Query: 180 DTQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANS 235
           +    K+Y A+ G ++D+D Q+ +IL +G VH++   S+D SI+ F+ YT  L   +   
Sbjct: 180 EAGKTKVYLAERGNAVDVDGQSYLILENGSVHQQQRESRDSSILTFERYTIDLAAFAPPD 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  + K  +++ + LL P+     Y+ +    +R+E H RL+  L+P+    I+  A   
Sbjct: 240 SDTIYKPRERSTAQLLFPDTTEGYYKLQ-KGRFRAELHDRLSACLYPLALVFIAFAALGD 298

Query: 296 RALVRQRKKI 305
               RQ + +
Sbjct: 299 PRTTRQGRGV 308


>gi|307946743|ref|ZP_07662078.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
 gi|307770407|gb|EFO29633.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
          Length = 395

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 156/310 (50%), Gaps = 7/310 (2%)

Query: 1   MKSFELYIL-RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK+ E YI  R IG  F M+   +  + W  Q L++++LV+S  +++   + I+   +P 
Sbjct: 1   MKTLERYIFKRAIG-VFFMAMAAMAGVVWSTQALRQLDLVTSKGQTIVQFIGITMLALPF 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +L +V PF   +    VL +++ ++EL++ID TG SR  ++KPVL     ++        
Sbjct: 60  LLVIVAPFALMIALVLVLNALSGDSELIVIDATGGSRFLVLKPVLIFTAAVTALTATLSI 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P     +++   + +  L  + ++   F  +D  L   I   + N TL G+ + D R
Sbjct: 120 YVAPLGLGELREEITRVRADLVANIVKPGHFINMDAGLTFHIRNRSGNGTLDGLLLHDVR 179

Query: 180 DTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANS 235
           D  T   Y + +G I    DR  +++ +G + RK   + +ISI++F+SY     +    +
Sbjct: 180 DKDTAFTYQSDTGHIVEVADRTLLVMQNGTIQRKPKGAGEISIVRFQSYAFDLSNLIPEA 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  V KA++++   LLNP PN+  Y  +  +   +E H+R +Q L+ + F L+      K
Sbjct: 240 SEPVYKASERSTMNLLNPPPNDA-YALQHPDKLLAELHERFSQPLYCLAFALVVFAFLGK 298

Query: 296 RALVRQRKKI 305
               RQ + I
Sbjct: 299 ARTTRQGRGI 308


>gi|254473376|ref|ZP_05086773.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
 gi|211957492|gb|EEA92695.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
          Length = 415

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 160/292 (54%), Gaps = 5/292 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F+++   +  + W  Q L++++LV+S  ++L     I+   +P +
Sbjct: 19  MKTIERYIIRRSFTAFIVTLAAMTGVVWSTQALRQLDLVTSKGQTLLQFGYITALALPFL 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL SM+R++EL++I+ +G S+  +++P++  ++ ++  ++     
Sbjct: 79  ILIVAPFAMMLAFIIVLNSMSRDSELIVINASGASKWLVLRPIMTFSLCVTALMYFLSIY 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + ++ L  + ++   F  ++++L   I   + +  L+G+ + D+RD
Sbjct: 139 LSPTGLAELRSELTRVRVDLVANIIKPGRFIPIEENLTFHIRNRSGDGVLEGLLLDDARD 198

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A++G I    D+  +++ DG + R+    +D+SI+ F+SY     S    + 
Sbjct: 199 PETSFTYTAETGRIIEAADKTLLVMLDGTIQRRPKGGQDMSIVSFESYGFDLSSMIPEAR 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
               KA+++    LL+ +P++ +Y  +  +    EFH RL+  L+P+ FGLI
Sbjct: 259 EPTFKASERPTFDLLSASPDD-SYAAKHWDKLIVEFHDRLSVPLYPIAFGLI 309


>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
 gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
          Length = 385

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 171/353 (48%), Gaps = 22/353 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R    +FL + L +  + W+ Q L+ ++++++  +++   + I+   +P +
Sbjct: 1   MNRLDRYVFRSAASAFLGTLLVLTLMIWITQALRELDIMTTQGQTILAFVFITSLALPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    M     L  MN ++E+++    G S    ++P++ LA++++    +    
Sbjct: 61  ILGLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVAACCSVLSLE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   ++ +  +     +   F  L D +   + + N N  L GIFI D+RD
Sbjct: 121 LVPAAMRQFRYEISRVRADVVAFIAQPGRFTTLADGMVFHVRERNANGVLGGIFINDARD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
            +    Y A+ G +  + D   +IL +G +HR++P   D ++++F+ Y   L   ++N  
Sbjct: 181 PKQTNTYLAERGQVVDNKDGTFLILEEGAIHRRTPGKPDSNVVEFQRYAFDLSPFTSNGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAAD 294
             V +A +++   LLNP+P +  Y   +LE+ R   E H+RL+  L+ + F  I+  A  
Sbjct: 241 NAVYRAPERSFRELLNPDPKDYVY---ILESGRFTEELHRRLSLPLYVLAFFGIACAALA 297

Query: 295 KRALVRQRKKIH-----PIFISLSI-SFGVFWGFSYIIHKIEQNPYYIPILYL 341
           +    R+ + +      P  I L + SFG       +I++I  NP  IP +YL
Sbjct: 298 EPRTTREGRGLALAATTPFVIVLQVTSFG-------LINQIRGNPSVIPFVYL 343


>gi|118590094|ref|ZP_01547497.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
 gi|118437066|gb|EAV43704.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
          Length = 395

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 157/307 (51%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTIERYIIRRTVYAFTLTIAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL S++ ++EL++ID +G SR  ++KPV+  ++++ +        
Sbjct: 61  IVIVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVMLFSLVVMLLTASMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  ++D L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFITVEDGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A +G I    DR  +++ +G + R+     DISI++F+SY     +    + 
Sbjct: 181 PETAFTYQADTGQIVEAADRTLLVMQNGTIQRRPKQQGDISIVRFQSYAFDLSNLIPEAG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V KA++++   L++P  ++  Y  +  +    E H+R +Q L+ + FGLI      K 
Sbjct: 241 EPVYKASERSTLNLMSPGRHD-EYALKNPDKLVQELHERFSQPLYCLAFGLIVFAFLGKA 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|90419502|ref|ZP_01227412.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
 gi|90336439|gb|EAS50180.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
          Length = 392

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 178/353 (50%), Gaps = 21/353 (5%)

Query: 1   MKSFELYILRCIGRSFL---MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M   E YI +   R+F+    S   +V I W++Q L RI++V +S  + + +  I+  L+
Sbjct: 1   MTILERYIFK---RAFVYAASSLTSLVLIVWIVQALSRIDVVKTSASAASNIFWIALMLL 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +   V PF   +     L S+N ++E  +I   G S+  + +P++ L +L  + + + 
Sbjct: 58  PDLFAGVLPFALLIGAIQALNSLNSDSERAVISAAGASQAVIARPIVALGLLGGLIMLLI 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            N++ P   S  +         +   +L+   F ++ D + I I   N   T++ + I D
Sbjct: 118 GNVVGPASMSAFQNGIRSINADMITLFLKPGRFEQVQDGIVISIGDVN-GATVESLVIAD 176

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +RD  +   Y+A+   I +D  A   ++L DG++HR++     +S+++F++Y     +  
Sbjct: 177 TRDPASDLTYFAREAKI-IDEDASSLLLLFDGQLHRRNTADNSVSVIQFQTYAFDLAALR 235

Query: 235 SST--IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +T    ++A++++ + L+ P+PN+  Y+ E   ++  E   R+T WLF + F L +IV 
Sbjct: 236 PATDNSWVRASERSTAALIWPDPNDGLYQ-ERPHSFTEELTDRMTNWLFAIAFVLWAIVV 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVF---WGFSYIIHKIEQNPYYIPILYLF 342
           A + +  RQ     P  +++ +  G+     GF   + +IEQ  +++ I YL 
Sbjct: 295 AGQPSTNRQ--GTGPA-MTVGLCGGLVLKAAGF-VTLSQIEQGVFWVVISYLL 343


>gi|240140389|ref|YP_002964868.1| putative permease [Methylobacterium extorquens AM1]
 gi|240010365|gb|ACS41591.1| putative permease [Methylobacterium extorquens AM1]
          Length = 389

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + L+E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVLKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI-DLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                +Y A+ G + ++D Q  ++L  G +HR+   S+D SI+ ++ Y   L   +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYP 285


>gi|254501938|ref|ZP_05114089.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
 gi|222438009|gb|EEE44688.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
          Length = 395

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 150/292 (51%), Gaps = 5/292 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MNTLERYIIRRTAYAFTLTLAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V PF   +    VL S++ ++EL++ID +G SR  ++KPVL  A ++ + +      
Sbjct: 61  IVTVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVLAFATIIMLLVSALSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  +++ L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFINVEEGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
             T   Y A++G+I     R  +++ +G + R+     D+SI++F+SY     +    +S
Sbjct: 181 PDTAFTYQAETGNIVEAAGRTLLVMQNGTIQRRPKQVGDMSIVRFQSYAFDLSNLIPEAS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
             V K ++++ + LL P P N  +     E  R+E H+R +  L+ + F LI
Sbjct: 241 EPVFKPSERSTANLLGP-PGNDYFAVTHPERLRAEIHERFSLPLYCLSFALI 291


>gi|163853056|ref|YP_001641099.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218531866|ref|YP_002422682.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254562993|ref|YP_003070088.1| permease [Methylobacterium extorquens DM4]
 gi|163664661|gb|ABY32028.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218524169|gb|ACK84754.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254270271|emb|CAX26267.1| putative permease [Methylobacterium extorquens DM4]
          Length = 389

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI-DLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                +Y A+ G + ++D Q  ++L  G +HR+   S+D SI+ ++ Y   L   +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYP 285


>gi|188583150|ref|YP_001926595.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346648|gb|ACB82060.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 389

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 142/286 (49%), Gaps = 5/286 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFVTLALAVSVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI-DLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                +Y A+ G + ++D Q  ++L  G +HR+   S+D SI+ ++ Y   L   +   +
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P
Sbjct: 241 ETVYKPRERSTLALLFPDTGEGYYRLQ-KGRFRAELHDRLSAWLYP 285


>gi|148255228|ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407401|gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 389

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   +++I +      
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAAF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     IKQ  A+    +  + L+   F +LD +L I+I +  P   LQGI I D RD
Sbjct: 121 FAPDGLRRIKQWDAEITADVLANILQPGRFAQLDQNLTIRIRERQPGGELQGILIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
            +      A+ G++  + D   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 PKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYLWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSIS-FGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F S  ++ FGV   GF+  +  + + P    + YL LF +  + + +I
Sbjct: 300 RTTRQSRNFS--FGSAILAVFGVRMAGFACSVMTV-KTPVAALVQYLMLFGVLGLSIWII 356


>gi|209885016|ref|YP_002288873.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873212|gb|ACI93008.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 385

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 170/363 (46%), Gaps = 13/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + S + Y++R    SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +
Sbjct: 2   LGSIDAYVVRSTLLSFLIVLISLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +  T+ L  +  ++E+++++  G S    ++P ++  ++++  +      
Sbjct: 62  ALIIAPLAILLAVTHTLNRLATDSEIIVMNAAGLSPWRFLRPFMYSTVIVACLISFLAVF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+C   +++   +    +  + L+   F RL D L +++ +  P   L G+FI D R+
Sbjct: 122 LAPECLRALRRWHTEIGADVLANVLQPGQFIRL-DKLVLRVQERRPGGVLVGVFIDDQRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                   AQ+G +    +   ++L+DG + R     KD  I+ FKSY       S    
Sbjct: 181 PAERINITAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T    A ++ +S L++P P +       L  +R+E H RL   L+P +F +++       
Sbjct: 241 TYNYNARERFISELISP-PKDDQVAQRSLGQFRAELHDRLLAGLYPFVFVILAFAFLGPP 299

Query: 297 ALVRQRKKIH---PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              RQ +       I + L +  G   G++     + Q P  I + Y  L  ++++   M
Sbjct: 300 RTTRQGRNFAISMLILVVLVVRIG---GYACSTIAVSQ-PAAIAVQYAMLLAVAALSGWM 355

Query: 354 IKK 356
           I K
Sbjct: 356 IVK 358


>gi|218679464|ref|ZP_03527361.1| putative permease protein [Rhizobium etli CIAT 894]
          Length = 138

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 86/127 (67%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 130

Query: 121 IEPKCRS 127
           +EP+ ++
Sbjct: 131 VEPRAKT 137


>gi|114704779|ref|ZP_01437687.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
 gi|114539564|gb|EAU42684.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
          Length = 398

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 6/305 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    S + S + +  I W++Q L RI++V +S  +   +L I+  L+P +
Sbjct: 1   MTLLERYIFRRALISSVGSLVSLALIVWIVQALSRIDIVKTSASAAGNILWIALMLLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V PF   +    VL  +N ++E  +I  +G S   +++P+++L +   I +    + 
Sbjct: 61  AAGVVPFAILIGAIQVLNGLNADSERAVIAASGASMRVILRPIIYLGLAGGILVLTVAHG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S          +     +L    F R+  DL I + + N  + ++ +FI D+RD
Sbjct: 121 IGPLASSAFYNGIRSINVDTITLFLRPGRFERVSPDLVISVGESN-GSIIESLFIQDTRD 179

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y+A   SI    D+  ++L DG++HRK      +S+++F++Y     +   +  
Sbjct: 180 PNLDLTYFAAEASILDQGDQSVLMLFDGQLHRKPKTGNSVSVIEFQTYAFDLSNLRPADD 239

Query: 239 VLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                   LS   L+ P+P++  Y+ +    Y  E   R T WL+ V F L +IV A + 
Sbjct: 240 GDWTRTSELSTLTLIAPDPDDEIYQKK-PGRYVEEATDRFTSWLYCVAFALWAIVCAGQP 298

Query: 297 ALVRQ 301
              RQ
Sbjct: 299 QTNRQ 303


>gi|23008753|ref|ZP_00050063.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 339

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 144/295 (48%), Gaps = 9/295 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+G  +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITGLSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+        
Sbjct: 61  ITVIAPVALFIACVYALNRLNGDSELIVMSAAGMPPRQLLRPFVTLALAISVVTAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD  +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDSGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI-DLDRQA-IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                +Y A+ G + ++D Q  ++L  G +HR+   S+D SI+ ++ Y   L   +   S
Sbjct: 181 AGKAVVYLAERGRVTEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLIS 289
             V K  +++   LL P+     Y   +L+  R  +E  +RL+ W +P++   I+
Sbjct: 241 ETVYKPRERSTLALLFPDTREGYY---VLQKGRFWAELDERLSAWFYPLVLAFIA 292


>gi|146340304|ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193110|emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 389

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 170/359 (47%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   ++++ + +  + 
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLASY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L+ I I D RD
Sbjct: 121 IAPDGLRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIGERQPGGELKNILIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
            +      A+ G++  + D   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 PKERITIIAEKGTVVKNADGSFLVLEDGNLERFEIGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ +  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYVWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +        L++ FGV   GF+  +  + + P    I Y+ LF + ++ + +I
Sbjct: 300 RTTRQSRNFSFGSAILAV-FGVRMAGFACSVMTV-KTPIAALIQYVMLFGVLALSIWII 356


>gi|75675869|ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420739|gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 390

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 170/359 (47%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P L+  +++++ +      
Sbjct: 61  VLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +KQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKQWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
           +       A  G++  + Q   +IL DG + R     ++ +++ F  Y       S    
Sbjct: 181 SNERLSIIADHGTVMKNDQGSFLILEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P+  +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPDEKDPLVQ-QLRGQFRAELHDRFTAPIYPFAFAALTFAFLGSP 299

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  +++  FG+   GF+  +  + ++P    + YL LF    I L +I
Sbjct: 300 RTTRQSRNFS-MGAAIAAVFGLRMAGFALSVMTV-KSPMAALLQYLLLFGAIGISLRVI 356


>gi|300023217|ref|YP_003755828.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525038|gb|ADJ23507.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 398

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 167/345 (48%), Gaps = 7/345 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  Y+ R    SF +  + +  I W+   L++ N+V+S  +   +L+K++   +P +
Sbjct: 1   MRIFSKYVFRQAAGSFALIMVSLTGIVWIALALRQFNVVTSQGQDTWMLIKMTSLAVPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF F +   + L  +N ++EL++I  +G    T  +P+L LA+L+SIFL    + 
Sbjct: 61  MAVIAPFSFLIAALHTLNRLNTDSELIVISASGAKVWTAARPLLLLALLVSIFLAFVSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P     ++    + +  L    ++   F   +  L   I   + N  L G+ + D+RD
Sbjct: 121 AQPWSMRQLRDYMVQVRSDLLTQVIQPGRFTSPETGLMFHIRDRDANGELLGLVMHDTRD 180

Query: 181 TQTHKIYYAQSGS-IDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANS 235
               + Y A+ G+ +  D  A +++  G + R++  +    I+ F  Y +     E  + 
Sbjct: 181 KAQSQSYLAEHGTLVKQDGTAYLVMTVGHIIRRTDANGPPQIVAFDKYIVDLDRFEPQDG 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               LK  ++  S L+NP+P + +Y+ +  + +RSE H+R    L+P+ F  + I+A   
Sbjct: 241 GPGDLKPRERYFSELINPDPESSSYKNQPGQ-FRSELHERFVTPLYPLAFAFL-IIAFVG 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
           +A   +  ++  + ++  I+         I + + +NP  + + Y
Sbjct: 299 QAQSTRTSRMQSLVVTFVIAATCRLAGLAITNAMVRNPSMVAVAY 343


>gi|312113656|ref|YP_004011252.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218785|gb|ADP70153.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 387

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI R    + +M  + +  I W+  +L+ I L+++  ++  + L+I+   IP+++  V P
Sbjct: 6   YIFRQTASALIMILVSLTLIVWLTSLLREIKLLTAQGQTFLLFLQITALAIPSLIVTVAP 65

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +   + L  ++ ++EL+++   G+S   L  P LFLA+++S+ +  +   + P   
Sbjct: 66  VAFLIAALHSLNRLSGDSELIVLSAAGSSVWRLFSPYLFLAVVVSMCVLTANLFVLPNAA 125

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             +    ++ +  +    ++   F  L+  L   +     N  L G+ + D RD +    
Sbjct: 126 RLLGDTVSQVRADVLSQVIQPGEFSDLEPGLTFHMRAKGDNGELLGVVVRDERDPKAVTT 185

Query: 187 YYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKA 242
             A+ G I  D  R +++L+DG++ R+        ++ F SY       SA       K 
Sbjct: 186 VIAEQGQILQDGGRASMMLHDGQIIRQQAEKTAAQVVVFTSYAFDIGDFSAKKGPRERKP 245

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            ++++  LL P+  +P Y      ++RSE H+R +  L+P+ F +I+++
Sbjct: 246 RERDIGELLFPDKESPAYT-NTKGSFRSEIHERFSGALYPIAFAIIAVL 293


>gi|304392005|ref|ZP_07373947.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
 gi|303296234|gb|EFL90592.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
          Length = 402

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 136/274 (49%), Gaps = 6/274 (2%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +V + WV++ +Q ++++ S  + +   L I+   +P+++  V P    +     ++++N 
Sbjct: 25  LVGVIWVVRAVQEVDVIMSKGQGIMTYLTITTLGVPSLIAAVAPLALMIGMVRTISALND 84

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E++++  +G SR +L +P L+LA L++I ++       P   + +++     +  L  
Sbjct: 85  ESEMVVMHASGASRWSLARPFLWLAGLMAIMIYFLSLYGGPHSLTKMRETVNTMRADLIS 144

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID-LDRQA- 200
             +++  F +L   L   I+   P   L+G+FI D+RD   H  Y A SG+I  +   A 
Sbjct: 145 VVVKDGEFQQLGGGLMFHIATRLPGGELKGVFITDTRDENEHLTYLADSGTISKIGEDAY 204

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN---LSFLLNPNPNN 257
           ++L  G+V R +  + + S + F SY     + +  T   K+  +     S L +P+P +
Sbjct: 205 LVLRQGQVQRTTVKTNNSSFIDFDSYAFNLSTFSGGTGDGKSRSRGELRTSELFSPDPAD 264

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             ++      +R EFH R T  L+  +  ++ +V
Sbjct: 265 EMFK-RAPHRFRVEFHTRFTSGLYAFMVAIVILV 297


>gi|85716329|ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696845|gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 390

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 145/293 (49%), Gaps = 5/293 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
           +       A  G++  + +   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 SDERLSIIADHGTVMKNDKGSFLVLEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            +V    ++ L  L+ P+ N+P  + +L   +R+E H R T  ++P +F  ++
Sbjct: 241 DVVYGIRERYLWELIVPDQNDPVVQ-QLQGQFRAELHDRFTAPIYPFVFAALT 292


>gi|90423816|ref|YP_532186.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105830|gb|ABD87867.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 388

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 144/292 (49%), Gaps = 4/292 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTGMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P +F +++++I +      
Sbjct: 61  VLVIAPIALMIAVAHTLNRLANDSEIIVMNAAGLSPLRLVRPFMFASVVVAILVGFISAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I +  ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINRWDSEITADILANILQPGRFSQLETNLTIRVRERQPGGVLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                   A  G++  + D   ++L DG + R     +D +++ F  Y    ++ + +  
Sbjct: 181 PNERISIIADHGTVLKNNDGSFLVLEDGTLQRFESGKRDPALVAFGRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           +     ++ L  LL P P++  Y   L   +R+E H R+   ++P +F  ++
Sbjct: 241 VSYGIRERYLWELLWPEPDDALY-ARLPNQFRAEMHDRVLAPIYPFVFAALT 291


>gi|158425949|ref|YP_001527241.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
 gi|158332838|dbj|BAF90323.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 171/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +F+   L +  + W  Q L++++LV+S  +++   L I+   +PT+
Sbjct: 1   MGRLDRYIFSTSAVAFVGVTLVLTGMIWATQALRQLDLVTSQGQTILAFLAITSLTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL-FISEN 119
           + ++ P    + T+  L  +N ++E++++   G S   +++ ++ LA+L S+F   +S +
Sbjct: 61  IMVIAPAALFIATSYTLLKLNGDSEIVVMAAAGMSPWRVLRSLMLLAVLASVFCSALSIH 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I+    RS   Q+S      ++F   +   F  L   L   +     N  + G+FI D+R
Sbjct: 121 IVPASLRSFRDQVSRVRADVVSF-VAQPGRFVNLAPGLVFHVRDRAKNGVMSGVFINDAR 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSP-ISKDISIMKFKSYTLQ----TES 232
           + +    Y A  G I      I  +L +G +HR+ P  + + S+++F+ Y       T  
Sbjct: 180 EKEV-STYVADRGQIVEADNGIFLVLENGSIHRRVPGAASNGSVVEFQRYAFDLSALTPG 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + S   ++ N+++ +++ NP  ++P Y       +R E+HKRL+  L+P+ F  I+  A
Sbjct: 239 GSQSGADIRPNERSFAYISNPPKDDP-YMIVQPGRFREEYHKRLSAGLYPLAFFAIAAAA 297

Query: 293 ADKRALVRQRK-----KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +    R+ +      I PI  +L I+      F+ +  ++    + +P +YL
Sbjct: 298 MARPRTTRESRGLALAAIVPIMTALQIA-----NFA-VAGQLRTAAWAVPAIYL 345


>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
 gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
          Length = 405

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +FL   + +  + W  Q L++++LV+S  +++   + I+   +PT+
Sbjct: 1   MGRLDRYIFSTAAVAFLGVVVVLAGMIWATQALRQLDLVTSQGQTIIAFVAITSLTMPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T   L  +N ++E++++ + G     L++P++ LA+L+S F  +    
Sbjct: 61  VLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCALLAIK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T ++   K +  +     +   F  L   L   + +  PN  ++GIFI D+RD
Sbjct: 121 VVPASLATFREQVTKVRADVVSFVAQPGRFVNLSQGLVFHVRERAPNGVMRGIFINDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDI-------------------- 218
                 Y A  G I      I  +L +G + R+   +K+                     
Sbjct: 181 DGVST-YLADRGQIIESDAGIFLVLENGSIQRRGGAAKEAEKDASEANKDAGKDKGKSSN 239

Query: 219 -SIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
            S+++F+ Y   L + + NS    +K  ++ LS+++NP P +  Y       YR E HKR
Sbjct: 240 SSVVEFQRYAFDLSSLAPNSQGQDVKPMERPLSYVMNP-PQDDLYVRFFPGRYREELHKR 298

Query: 276 LTQWLFPV 283
           L+  L+P+
Sbjct: 299 LSAGLYPM 306


>gi|299135068|ref|ZP_07028259.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298590045|gb|EFI50249.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 381

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 134/275 (48%), Gaps = 6/275 (2%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
           SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +  ++ P    +  T
Sbjct: 8   SFLIVLVSLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVLALIIAPLAMLLAVT 67

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
           + L  ++ ++E+++++  G S    ++P +   ++++  +      + P+C   +++   
Sbjct: 68  HTLNRLSADSEVIVMNAAGLSPWRFLRPFMVSTVIVACLISFLAIFLAPECLRALRRWHT 127

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +    +  + L+   F RL D L +++ +  P   L G+FI D R+        AQ+G +
Sbjct: 128 EIGADVLANVLQPGQFIRL-DKLVLRVQERRPGGVLVGVFIDDQRNPAERINITAQNGVV 186

Query: 195 DLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKANDQNLSFL 250
               +   ++L+DG + R     KD  I+ FKSY       S    T    A ++ +  L
Sbjct: 187 QKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQTYNYNARERFIGEL 246

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           ++P P +       L  +R+E H RL   L+P +F
Sbjct: 247 ISP-PKDDAVAQRSLGQFRAELHDRLLAGLYPFVF 280


>gi|27379218|ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352369|dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110]
          Length = 389

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 163/359 (45%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+  ++P +
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLVVPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L  P  +   ++++ +      
Sbjct: 61  VLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D RD
Sbjct: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDKNLTIRIRERLPGGILAGIFIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                   A+ G +  +     ++L  G + R     +D +++ F  Y       S    
Sbjct: 181 PNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMSKFSGQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L +P+ ++P Y+ ++   +RS  H  L   ++P  F +++       
Sbjct: 241 DVTLGIRERYLWELFSPSEDDPVYK-QIPGQFRSALHDSLLAPIYPFAFAVLTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    I  S+   FG+   GF+  +  + ++P  + + Y  +     + + MI
Sbjct: 300 RTTRQSRNFS-IGSSIVAVFGLRMAGFACSVMAV-KSPAAVLVQYAMVLGAIGVGMWMI 356


>gi|92117863|ref|YP_577592.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800757|gb|ABE63132.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 170/359 (47%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I++ +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRVRERQPGGLLVGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
                   A  G++  +     +IL DG + R     ++ +++ F+  ++ +   S    
Sbjct: 181 PNERLSIVADHGTVMKNDNGSFLILEDGHLERLEAGKREPNMVAFRRNAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P P +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPEPTDPLVQ-QLPGQFRAELHDRFTAPIYPFAFAALTFAFLGTP 299

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  ++   FG+   GF+  +  + ++P    + YL LF    + L +I
Sbjct: 300 RTTRQSRNFS-MGAAIVTVFGLRMAGFALSVMAV-KSPTAPLLQYLLLFAAIGVSLRVI 356


>gi|86749600|ref|YP_486096.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572628|gb|ABD07185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L +P ++  I ++  + +  + 
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLFRPFVYATIFVAALVTLIGSY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  A+    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDAEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                   A  G++  + D   ++L DG + R     ++ +++ F  Y    ++ + +  
Sbjct: 181 PADRVSIIADHGTVLKNKDGSFLVLEDGHLERFQGGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           +     +  L  L+ P+P +P    +L   +RSE H RL   ++P
Sbjct: 241 VAYGIREHYLWELIWPDPKDP-LLAQLPTQFRSEMHDRLLAPIYP 284


>gi|39936124|ref|NP_948400.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|192291842|ref|YP_001992447.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649978|emb|CAE28502.1| possible permease [Rhodopseudomonas palustris CGA009]
 gi|192285591|gb|ACF01972.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 388

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 161/362 (44%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + I    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVIIIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+R 
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQGLTIRVRERQPGGLLVGVFIDDARA 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y    ++ + +  
Sbjct: 181 PNERVSIIADHGTVVKNDKGSFLVLEDGHLERFQTGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  N+P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VAYGIRERYLWELLWPAENDP-LLARLPTEFRSEMHDRLLAPIYPFFFAAVAFAFLGLAR 299

Query: 298 LVRQRKK---IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +       + ++  +    F   S I +K    PY   + YL LF  +   L +I
Sbjct: 300 TTRQSRNFSMAGAVLVAFVVRLAGF-ALSVIANK---TPYVAGLQYLLLFVATGTCLWLI 355

Query: 355 KK 356
            +
Sbjct: 356 NR 357


>gi|115525294|ref|YP_782205.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519241|gb|ABJ07225.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 388

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 157/346 (45%), Gaps = 5/346 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++   +P +
Sbjct: 1   MGSTDSYIFRTTLASFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTSMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P ++ A ++++ +      
Sbjct: 61  ILVIAPLALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLMRPFMYAAAVVALLVGFIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I    ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINNWDSEITADILANILQPGRFAQLEQNLTIRVRERQPGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
            +      A  G++  + D   ++L DG + R     +D +++ F  Y    ++ + +  
Sbjct: 181 PKERVSIIADHGTVLKNADGSFLVLEDGTLQRFELGKRDPALVAFGRYAFDMSKFSKARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  L+ P P +P     L   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIRERYLWELIWPQPGDP-LVARLPNQFRAEMHDRLMAPIYPFAFAALTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             RQ +         ++      GF+  I     NP++  + YL L
Sbjct: 300 TTRQSRNFSVAGAIAAVFLLRLAGFACSIMT-NTNPWFAALQYLLL 344


>gi|91977434|ref|YP_570093.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683890|gb|ABE40192.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 388

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 165/360 (45%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGAIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P ++  I +++ + +    
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFVYATIAVAVLVTLIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                   A  G++  + D   ++L DG + R     ++ +++ F  Y    ++ + +  
Sbjct: 181 PNDRVSIIADHGTVVKNSDGSFLVLEDGHLERFQAGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +  L  L+ P+P +P    ++   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIREHYLWELIWPDPKDP-LLAQVPTQFRAEMHDRLLAPIYPFFFAAVTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             RQ +    +  +++ +F V   GF+  +      PY   I YL L     + L +I++
Sbjct: 300 TTRQSRNFSMVG-AVACAFVVRLAGFALSVVA-NHTPYIAGIQYLLLAVAIGVSLWLIRR 357


>gi|316933708|ref|YP_004108690.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601422|gb|ADU43957.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 388

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 164/362 (45%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + +    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLAVDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVTVIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEPGLTIRVRERQPGGILVGVFIDDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y    ++ + +  
Sbjct: 181 PNERISIIADHGTVLKNEKGSFLVLEDGHLERFQAGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  ++P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VSYGIRERYLWELLFPPADDP-LLARLPTEFRSEMHDRLLAPIYPFFFATVAFAFLGLPR 299

Query: 298 LVRQRKK---IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +    I  + ++  +    F   S I +K    PY   + YL L    +I L +I
Sbjct: 300 TTRQSRNFSMIGAVLVAFVVRLAGF-ALSVIANK---TPYVAGLQYLLLAVAIAICLWLI 355

Query: 355 KK 356
           K+
Sbjct: 356 KR 357


>gi|304321348|ref|YP_003854991.1| putative permease [Parvularcula bermudensis HTCC2503]
 gi|303300250|gb|ADM09849.1| putative permease [Parvularcula bermudensis HTCC2503]
          Length = 426

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 133/283 (46%), Gaps = 7/283 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI + +   FL+       + W  Q+LQR++L+     SL   L+++  LIP+++ +
Sbjct: 49  LDRYIFKQVAVPFLLILACTTAVIWFTQMLQRVDLMVEDGGSLLSFLRVTVLLIPSLVGV 108

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENIIE 122
           + PF         L     ++EL  +   G SR+ L +PVL L+IL ++  L+I+ + ++
Sbjct: 109 ILPFAVFAAVLYALNLFVTDSELPAMRAAGASRLRLARPVLVLSILAALVSLYINAD-LQ 167

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK    ++Q     +  +  S + E +F +    + +   +  P     G+FI DS D +
Sbjct: 168 PKTYRQLRQTVEDVRSDIAQSLIREGVFVQPTAQITVFAQEVRPGGQFIGLFINDSSDPR 227

Query: 183 THKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSSTI 238
             K Y A+ G   +      ++L +G V  +   +  + + ++   +  L      S   
Sbjct: 228 ETKTYTAERGLFQMAETGPKLLLIEGTVQYRDRETGRVDVFRYIETAVDLAAFDRGSGGR 287

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            L   ++ +S LLNP+ ++P+    L + YR+  H RL   L+
Sbjct: 288 SLDETERTVSQLLNPDLSDPSI-ARLADRYRAAGHARLATPLY 329


>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
 gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
          Length = 381

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 16/374 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +G   L   + +  + W+ Q L+ I LV     SL + ++++G L+P+ 
Sbjct: 1   MTRLDRYLFRQLGIGLLAVTIGLAALVWLTQSLRFIELVLDRGLSLAVFVELTGLLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T      +N + EL+++   G S   L +P L +A L + F    +  
Sbjct: 61  FAVILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRPALLIATLATGFCLFLQLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +    + +  +    L+E +F  L DDL +   +   + TL+GI + D R+
Sbjct: 121 LVPVSHAAFRSWQFEIRNEMAAILLQEGVFSSLGDDLTVYARRREADGTLRGILVHDMRE 180

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKD----ISIMKFKSYTLQTESA 233
             T     AQ G   S     + I+LN G+  +  P +      +S++ F   ++   S+
Sbjct: 181 PGTPVTIMAQEGRLVSTPAGPRVILLN-GQREQLEPATATHPARLSVLSFAENSVDLASS 239

Query: 234 NSSTI-VLKANDQNLSF---LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           + S + V +  D    F   LLNP+P   N     +  +R+E H+RL      +   ++ 
Sbjct: 240 SRSPVDVARNRDSRERFVPELLNPDPAE-NLPERDIRKFRAEGHQRLASPFTALSMAMVG 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CIS 347
           +  A      R+     P  I +++   +      I +   ++  YIP+++L      + 
Sbjct: 299 LAVALASGF-RRHGDWRPAAIGVALVVALLALGLAIGNLAARDNRYIPLIWLHTLGPVLG 357

Query: 348 SIFLLMIKKKYTKI 361
           + ++L  +  + KI
Sbjct: 358 AAWVLSGRPGWPKI 371


>gi|114328863|ref|YP_746020.1| hypothetical protein GbCGDNIH1_2199 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317037|gb|ABI63097.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 400

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 147/313 (46%), Gaps = 10/313 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + Y++R +  + +     +V + W+ Q L+ I LV +   S+ + LK++G LIP+ 
Sbjct: 18  LTTLDRYVMRQLLVALVACTCGLVALIWLTQSLRFIELVVNRGLSVFVFLKLTGLLIPSF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    V   +  + EL ++   G S   + +P L +A+L  +  F+    
Sbjct: 78  VAVIIPITTYVVVQFVYQRLAGDRELTVMRAAGLSSWVMARPALLVALLTMLLSFVLNLW 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S  ++   + +  +    L++ +F  + DD+ + I K + + TL GI I D+R 
Sbjct: 138 IVPAAFSAFREYQWEIRNKMAAFLLQDGVFTPVSDDMIVYIRKRDADGTLHGILIDDARK 197

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
             +H    AQ G ++        ++L  G        +  ++I+ F   T+  E S    
Sbjct: 198 ADSHATIIAQRGRMEQGSNGAPQVVLESGSRQELDRHTGRLNILTFNENTISLEQSGKDE 257

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                AN+ +L+ LL+P+P+    R  P+L    R E H+RL+  L  + F ++++V+  
Sbjct: 258 QRSRDANEMSLTELLHPDPSQVMARDIPKL----RVEAHRRLSGPLNVLSFAVVALVSVL 313

Query: 295 KRALVRQRKKIHP 307
             A  R    + P
Sbjct: 314 NGAFRRHGGLLRP 326


>gi|218661972|ref|ZP_03517902.1| putative permease protein [Rhizobium etli IE4771]
          Length = 115

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRGVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L 
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILL 115


>gi|260576761|ref|ZP_05844746.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
 gi|259021013|gb|EEW24324.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
          Length = 376

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 133/296 (44%), Gaps = 4/296 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + +    +S  + L+ S   +P+V
Sbjct: 1   MSRFDRYLLSQLLALFGFFSLVLVAVYWINRAVLLFDKLIGDGQSALVFLEFSLLTLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   + T   +  + R++EL+++  TG S + L +PV    ++++  + +  ++
Sbjct: 61  IMLVLPFSAFVATVYGINRLTRDSELVVMQATGFSPLRLARPVAIFGLIVAAMMAVLLHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R+T+ Q + +    L   +L +  F      + + I + +P   L+ +F+ D+R 
Sbjct: 121 LVPESRATLAQRTLEVSENLAARFLMDGQFMHPAKGITLYIREISPKGELRDVFLADTRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +H  Y A    +        +++ DG V   +     +S+ +F  +T    +  +   
Sbjct: 181 PTSHATYTASRALLVKGDSGPKLVMLDGMVQNLNNKEGRMSVTRFADFTYDLATLIAGPK 240

Query: 239 VLKANDQNLSF--LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           VLK N   LS   LL P+        E  E    + H RL Q +  +   LI   A
Sbjct: 241 VLKRNASALSTYDLLWPSAEILQETAETPEALWFQAHNRLAQPILGLAAALIGFSA 296


>gi|329114150|ref|ZP_08242912.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
 gi|326696226|gb|EGE47905.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
          Length = 401

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L K  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALAKAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 A  GS+ +  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 241 K-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           + A + +L  LL+P+P   + R      ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSVRDT--GKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSI 314
           R      P+   L++
Sbjct: 331 RYGNIKRPLAAVLTV 345


>gi|254294286|ref|YP_003060309.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042817|gb|ACT59612.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 385

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 158/351 (45%), Gaps = 17/351 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+   + R+ +     +V IA + Q L +I+L+  + +S    L +S    P V
Sbjct: 1   MDRFQQYLFGNVLRTMVSIVGGLVLIALLTQGLTQIDLIVENRQSAFTFLYVSMLAAPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L   +R++E+++    G SR+ +  PVL +A + ++        
Sbjct: 61  IGLLLPIALFVAAIATLNRAHRDSEIVVAQAAGMSRLQIASPVLRIAAIAALLHLCINLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++    A+  L  + ++   F     +L + I K      L+ + I D+RD
Sbjct: 121 VQPASYREMRETLTSARTDLAATLVKPGEFNSPAHNLTVYIGKSLGGGELRTLLISDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANSS 236
              +  Y A++G++       AI++ +  V +     +  D +  ++  Y L     + +
Sbjct: 181 PDANTTYIARTGAVTEVEGVPAILMRNARVQKIDGNGQLWDGTFDQYI-YELAAFVDSDT 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + VLKA+D+ L  LL P+ NN  Y  +  E + +E H RL   L  +   ++++VA    
Sbjct: 240 SYVLKASDRFLHELLYPDFNN-FYDRDNAEKFYAEGHSRLALPLMNMFMAMLAVVAVLGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYI--IHKIEQNP------YYIPIL 339
              R+  +     IS++   G+F     +  +   E NP      Y IPIL
Sbjct: 299 DFSRRGYQTR---ISVATGIGLFAQLLALASVSVGEDNPKLNFIQYLIPIL 346


>gi|258542097|ref|YP_003187530.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633175|dbj|BAH99150.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636232|dbj|BAI02201.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639287|dbj|BAI05249.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642341|dbj|BAI08296.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645396|dbj|BAI11344.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256648451|dbj|BAI14392.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256651504|dbj|BAI17438.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654495|dbj|BAI20422.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 401

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L +  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALARAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 A  GS+ +  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 241 K-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           + A + +L  LL+P+P   + R      ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSERDT--GKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSI 314
           R      P+   L++
Sbjct: 331 RYGNIKRPLAAVLTV 345


>gi|330993929|ref|ZP_08317859.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
 gi|329758875|gb|EGG75389.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 146/314 (46%), Gaps = 11/314 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+LR +  + + +   +V + W+ Q L  ++LV     SL + L+++G LIP+ + ++ P
Sbjct: 21  YMLRQLLLALVATTGALVTLIWLTQSLHFVSLVVGRGLSLRVFLELTGLLIPSFVAVILP 80

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +    +   +  + EL ++   G S   + +P L  A + ++   +    I P   
Sbjct: 81  ITTFVVVQFIYQRLGGDRELTVMQAAGLSPALMARPGLMCAAIATLVCLVLNVWIVPVSY 140

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              +Q   + +  +    +++ +F ++ D++ + I   + + TL GI + D R       
Sbjct: 141 HAFRQYEFQIRNRMAAFLIQDGVFTQVSDNMTVYIRARDKDGTLHGIMVEDDRTPGAEAT 200

Query: 187 YYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKAN 243
             A+ G++ +  D+  ++L +G        +  ++++ F   T+   S +++ T +  AN
Sbjct: 201 ILAEEGNLVIINDQPRVVLFNGSRQEIDSHTGRLNVLTFTRNTIDLSSPHTAHTRLPDAN 260

Query: 244 DQNLSFLLNPNPNNPNYRPE---LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + +++ LL+P+ +  + R E    +E +R     RL+       F +I +V A   +  R
Sbjct: 261 ELSIAQLLHPDLHQYSRRDESKMFIEAWR-----RLSTPFCAFSFAMIGLVGAMGGSHSR 315

Query: 301 QRKKIHPIFISLSI 314
           Q   + P+   L++
Sbjct: 316 QAGIVRPVLAILAV 329


>gi|144897578|emb|CAM74442.1| conserved hypothetical protein, membrane [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 373

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 147/349 (42%), Gaps = 13/349 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y LR +    L     +  + W+ Q L+ I ++ +   S+   LK++G L+P+ 
Sbjct: 1   MTGITRYFLRQLAVGMLFVSAALTCVLWLTQSLRLIEMIVNQGISVTTFLKLTGMLMPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +N + EL+++   G S   L KP L LA + +I  ++    
Sbjct: 61  LVVIIPIALFAVILFTYNKLNTDRELVVLRAAGLSNWALAKPALILAGIATIMGYVLSVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+     +++    +  ++   L+E  F +    + I +        L G+ + D R 
Sbjct: 121 IIPQTVQNFREVQWSIRNDISNLLLQEGTFNKFGKGVTIYVRTRTSEGELLGLLVHDKRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                   A+ G++        I++ +G   +    +  +S++ F SYT  L     ++ 
Sbjct: 181 PTKPVTLMAEKGALVFTETGPRILMVNGNRQQLPDGTGQLSVLNFDSYTVDLSMSGGDNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNN---PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +    A + +++ LLN +       +YR       + E H+RLT  L+ + + LI++ A 
Sbjct: 241 SRFRDARELSMAELLNADEAQMGVTDYRRA-----KGELHQRLTSPLYSLGYTLIAL-AT 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
              A   +R +   I  ++ +  GV      + +     P ++P LY+ 
Sbjct: 295 LLTAGFDRRGQTVTILTAIGLMVGVQAAVLGLANLSASKPIFLPFLYVL 343


>gi|218516795|ref|ZP_03513635.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 102

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 61/90 (67%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           +P+V PF   +  T  LT+MN ++EL +ID
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVID 100


>gi|23016381|ref|ZP_00056138.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 372

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 141/299 (47%), Gaps = 18/299 (6%)

Query: 1   MKSFELYILR--CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           M     Y++R   +G  F+ + L  V   W+ Q L+ + ++ +   S+   LK++  L+P
Sbjct: 1   MSGITRYMMRQMLVGMIFVSAALACVL--WLTQSLRFVEMIVNKGLSIGAFLKLTILLMP 58

Query: 59  TVLPMVTPFC-FAMETTNVLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
             L ++ P   FA+    VL + NR   + EL+++   G S ++L +P + L + +S   
Sbjct: 59  GFLVVIIPISLFAV----VLFTYNRLIADRELIVLRAAGLSHLSLARPAIILGLAVSAVG 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           ++    I P    +  ++    +  +    L+E +F +  + L I +    PN  L G+ 
Sbjct: 115 YLLSCWIIPHTVRSFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLL 174

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQ--T 230
           + D R  Q      A+ G++    Q   +++ +G     +P +  +S++ F +YT+   T
Sbjct: 175 VHDKRHPQRAVTLMAERGALVYTEQGPRVLMINGNRQEVTPGTGKLSLLYFDNYTVDFNT 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            + N       A +++   LL+ + +  N + E L  ++SE H RL   L+ + F L++
Sbjct: 235 ATGNKPDRFRDARERSTLELLSMDDSMEN-KGE-LRRFKSELHSRLASPLYNLGFPLLA 291


>gi|296116656|ref|ZP_06835266.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976868|gb|EFG83636.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 386

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 145/314 (46%), Gaps = 19/314 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR +  + + +   +  + W+ Q L  ++LV     SL + ++++  LIP+ + +
Sbjct: 18  LDRYVLRQLLLALVATTGALALLIWLTQSLHFVSLVVGRGLSLRVFVQLTSLLIPSFVAV 77

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI-IE 122
           + P    +    +   +  + EL ++   G S   + +P L  A L+S+    + N+ + 
Sbjct: 78  ILPITTFVVVQFIYQRLGSDRELTVMQAAGLSPFMMARPALLCA-LVSVLACYALNLWVV 136

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q   + +  +    +++ +F ++ D++ + I   +P+  L GI + D R   
Sbjct: 137 PTAYHGFRQYEYQIRNKMAAFLIQDGVFTQVSDNMTVYIRARDPSGMLHGIMVEDDRQPD 196

Query: 183 THKIYYAQSGS--IDLDRQAIILNDG---EVHRKSPISKDISIMKFKSYTLQTESANSS- 236
                 A+ GS  I  D+  I+L +G   E+ RK   +  ++++ F+  T+   + + + 
Sbjct: 197 AQATILAEEGSFVITNDQPRIVLFNGSRQEIDRK---TGRLNMLSFERNTIDLSAPHGTQ 253

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           T    AN+  ++ LL+PN    + R E   ++E +R     RLT  L    F +I +++A
Sbjct: 254 TRQPDANELPITALLHPNLRQFSPRDEKKMIIEAWR-----RLTSPLCAFSFAMIGLLSA 308

Query: 294 DKRALVRQRKKIHP 307
                 R    + P
Sbjct: 309 LGGGFSRHGNIVRP 322


>gi|83312813|ref|YP_423077.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82947654|dbj|BAE52518.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 368

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 135/286 (47%), Gaps = 16/286 (5%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC-FA 70
           +G  F+ + L  V   W+ Q L+ + ++ +   S+   LK++  L+P  L ++ P   FA
Sbjct: 7   VGMIFVSAALACVL--WLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGFLVVIIPISLFA 64

Query: 71  METTNVLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
           +    VL + NR   + EL+++   G S + L +P + L + +S   ++    I P    
Sbjct: 65  V----VLFTYNRLIADRELVVLRAAGLSHLALARPAVILGLAVSAVGYMLSCWIIPVTVR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           +  ++    +  +    L+E +F +  + L I +    PN  L G+ + D R  Q     
Sbjct: 121 SFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRHAQRPVTL 180

Query: 188 YAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQ--TESANSSTIVLKAN 243
            A+ G++    Q   +++ +G     +P +  +S++ F +YT+   T +      V  A 
Sbjct: 181 MAERGALVYTEQGPRVLMVNGNRQEVTPGTGKLSLLYFDNYTVDFNTATGAKHDRVRDAR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           +++   LL  + +  N + E L  ++SE H RLT  L+ + F L++
Sbjct: 241 ERSTLELLAIDSSMEN-KGE-LRRFKSELHSRLTSPLYSLGFPLLA 284


>gi|95928709|ref|ZP_01311455.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
 gi|95135054|gb|EAT16707.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
          Length = 395

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 18/300 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I   FL+S +   F+  + ++L+ I +V     +++ +L +   L+P+   +
Sbjct: 6   LQTYISREIIAPFLLSLVLFTFVLLLSRLLKLIEMVVDKGVAVSEILHLFACLLPSFFVI 65

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P  F +        ++ ++E++ +   G S   L +PVL +A+L+  F      + EP
Sbjct: 66  TVPLSFLLAVMLAFGRLSADSEIVAMKAAGFSLYRLSQPVLIIALLVCGFTAYLTLVAEP 125

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDTQ 182
             R  +KQ       +     L+  +F    D L +  +   N  NT+ G+FI D R   
Sbjct: 126 AGRVKLKQRLIDIAYSKAAVALQPQIFNEEFDGLMMYANDVDNQTNTMTGVFISDERMGN 185

Query: 183 THKIYYAQSGSIDLDRQA----IILNDGEVHRKSPI----SKDISIMKFKSY----TLQT 230
           T  I  AQ G I  DR      + L DG +HR  P+     +   ++ F+SY    +L T
Sbjct: 186 TPSIIVAQRGEIRSDRTNGSLLMHLRDGSIHR--PVIRSGKRSYQVVDFQSYDVNLSLNT 243

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                 ++ LK  +     L+     +P    E     R E  +RL     P+IF L+++
Sbjct: 244 ADKEEKSLNLKPKEMTTKALMQ---ADPELSEEKQRERRVELMERLVLPFSPLIFALLAV 300


>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
 gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
          Length = 389

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+  LYI + I   FL+      F+  + ++L+   +V +    L  +L++  YL+P+ L
Sbjct: 3   KTLYLYIFKEIPPPFLLGVATFTFVLLMGRLLRLAEMVVTKGVPLADVLRMVFYLLPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENI 120
            +  P  F +        ++ ++E+  +  +G S   L+ PV   A++  +   FI+   
Sbjct: 63  LVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGAFITVYA 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPN-NTLQGIFIV 176
           + P   ++ K+L  +   A     ++E +F   +DD   L I   +YN    T+ GI I 
Sbjct: 123 V-PWGNTSFKKLLVEVVEARASLGIKEKIF---NDDFPGLVIYTDRYNQQKQTMSGILIQ 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           D RD       YA+SG I+ D       + L++G +HR         +++F++Y L   +
Sbjct: 179 DERDPLEPSTIYARSGVINSDPATKSIRLRLDNGSIHRTQG-KTGYRLVEFRNYDLNI-N 236

Query: 233 ANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            N +   +  N+ ++S   L  N  +  +  +++   R E+H+R +     +IF L+ +
Sbjct: 237 LNQAAQTVNKNELDMSLAELRANLASGRFDAKMMRDMRLEYHRRFSLPFACLIFALVGM 295


>gi|83945296|ref|ZP_00957645.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851466|gb|EAP89322.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 375

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y  R     FL +   +  +A + Q L  ++L++   E+  +L+ I+   +P V
Sbjct: 1   MTLFQRYTFRQALWPFLGAMAALTGLAVLTQSLSNLDLMAERGETALVLITITVLAMPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +  ++EL +    G SR   + P L LAI + +   +    
Sbjct: 61  IALLLPIAVFLAVAIALNRLTSDSELTVAAAAGMSRFQRVSPFLRLAIYVVLVNLVINLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     ++Q   + +  L  S++ E  F  L D +   + + + ++ L  +FI+D R 
Sbjct: 121 VQPASFRLMRQQLFEIRTDLAASFMREGEFVPLGDQVTFYVREISDDSVLNDVFIMDDRT 180

Query: 181 TQTHKIYYAQSGSIDL-DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSST 237
            Q+   Y A+ G I   DR  ++L +  V  +   S  ++ + F S  ++      N+++
Sbjct: 181 GQSAA-YAARRGRIAATDRGPVMLLEDGVRTQVDQSGVLTNLSFDSTKVELTLFVDNTAS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
           +  K +D+ L  LL P P +          Y +E H RL+  L+
Sbjct: 240 LFFKESDKYLPELLRPTPADIARAGGKGRLY-AEGHYRLSAPLY 282


>gi|163735795|ref|ZP_02143224.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
 gi|161390881|gb|EDQ15221.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
          Length = 375

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 159/371 (42%), Gaps = 23/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP-- 58
           M   + Y+L  +   F    L +V I W+ + +   + + S  +S  + L+ +   +P  
Sbjct: 1   MVRLDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDQLISDGQSALVFLEFTALGLPKL 60

Query: 59  --TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
             TVLP+ T F  A+  TN    MN  +EL ++  TG+  + L +PVL   +++ +   +
Sbjct: 61  ITTVLPIAT-FAAAVYVTN---RMNNESELTVLQATGSGPVRLARPVLVFGVIVFLMASV 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             +++ P  +  +     +     T   L E  F    + +     + + +  L+ +F+ 
Sbjct: 117 LHHVLMPLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQQIDDDGVLRDVFLS 176

Query: 177 DSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D R  +   IY A    +  D DR ++I+ DG   R +  +  ++   F+ ++    +  
Sbjct: 177 DRRHVEEGVIYTAAHAYLIRDEDRTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALV 236

Query: 235 SSTIVLKAN-DQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--- 289
            + +  + + D+  +F LL P           + T    FH R+   LF ++  LI    
Sbjct: 237 QNDVSQRLDPDRMTTFQLLTPWDQLSRETGRSIGTISQSFHARIADPLFCIVAALIGFST 296

Query: 290 -IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCI 346
            ++    R  V   +++   F+ L    GV    S +   + ++P   P+LYL  F+  +
Sbjct: 297 LMIGGFSRFGV--WREVAFAFVLLVAIDGV---RSTLQSPVRRDPELWPLLYLPTFISAL 351

Query: 347 SSIFLLMIKKK 357
             I +L I  +
Sbjct: 352 LVIAMLWIAAR 362


>gi|114569777|ref|YP_756457.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
 gi|114340239|gb|ABI65519.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
          Length = 373

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 134/309 (43%), Gaps = 15/309 (4%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F+ +      +A + Q L  ++LVS  +E+    +K++   +P +  ++ P    +    
Sbjct: 16  FMTAIAAFAGLALLTQSLSNVDLVSGYSETALTFIKVTALALPHLTALLVPIALFVA--- 72

Query: 76  VLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           VL+S+NR   ++EL+I    G SR  L+ P++ L + + I       +++P     +++ 
Sbjct: 73  VLSSLNRLTGDSELVIASAAGVSRFGLLSPIMRLGVYVLIANLAVNLLLQPVAYREMRRS 132

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
               +  +  S +    F +L   + I   +   +  +Q I I DSR T     Y A+ G
Sbjct: 133 LHTLRSDVAASLVTPGAFSQLGQGVTIYARERGRDGRMQDILIHDSRGTDGASTYSAREG 192

Query: 193 SI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNLS 248
            +    DR A++L DG + +    + ++    F  Y          +  +  K +D+ L 
Sbjct: 193 VVVRSGDRSAMVLIDGNLQQIDS-AGELYYANFDRYEFDLGEFVGPADAMFFKESDRYLH 251

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV---AADKRALVRQRKKI 305
            LL P+      R    E   +E H RL+  L+ + F LI+     A D   +   R+ +
Sbjct: 252 ELLWPSAAEVA-RTGGPERAWAEAHYRLSAPLYNLAFALIAAACFLAGDHSRMGYGRRVM 310

Query: 306 HPIFISLSI 314
             +   L++
Sbjct: 311 IAVGAGLTL 319


>gi|126462312|ref|YP_001043426.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103976|gb|ABN76654.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 376

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 92/190 (48%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQ 190
                 Y A+
Sbjct: 181 PARSTAYTAR 190


>gi|77463457|ref|YP_352961.1| permease [Rhodobacter sphaeroides 2.4.1]
 gi|77387875|gb|ABA79060.1| Predicted permease [Rhodobacter sphaeroides 2.4.1]
          Length = 376

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 92/190 (48%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQ 190
                 Y A+
Sbjct: 181 PARSTAYTAR 190


>gi|302383687|ref|YP_003819510.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194315|gb|ADL01887.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 13/284 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    L +C  +  I  + Q L ++ ++    +S+ +LLK++   +P +
Sbjct: 1   MTLIQKYLFRQISLPVLAACASLAGIGILSQTLDQLEIIVERGQSVWVLLKLTLLAVPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     LT + R  EL     +G SR  +I P  +LA+ +++ + ++  +
Sbjct: 61  FSVILPIGLFVGALIALTRLQREQELTAAYASGMSRWQMIAPGAWLAVCVAVVMLLTNVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           I+P  + T ++ +   +  L    +EE  F +  + L + + +   N  L+ +FI   + 
Sbjct: 121 IQPWSQRTAREQAFSIRTDLAALLVEEGRFVQGPNGLTVYVQQIEQNGLLKNLFIYIQNG 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
            +  T     A+ G +D  +  + +  G   + S  +  +  + F  Y   L     +  
Sbjct: 181 DEVTTWDASEARFGRVD-GQPVLTMKQGSWQQYSS-AGVLQQLVFDGYVFPLGQYVTDDQ 238

Query: 237 TIVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLT 277
            I  K  D  +  L NP      +   R ELL    +E H RL+
Sbjct: 239 KIRYKPADLWMGQLFNPTDALVRDTGSRGELL----AEAHSRLS 278


>gi|162149095|ref|YP_001603556.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545162|ref|YP_002277391.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787672|emb|CAP57268.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532839|gb|ACI52776.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 398

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 145/345 (42%), Gaps = 14/345 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR +  + L +   +  + W+ Q L  ++LV     SL + + ++  L+P+ + +
Sbjct: 21  LDRYVLRQLLVALLATTGGLSALIWLTQSLHFVSLVVERGLSLRVFIGLTSLLVPSFVAV 80

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +    V   +  + EL ++   G S   + +  L  A +  +   I    I P
Sbjct: 81  ILPITTFIVVQFVYQRLAGDRELTVMRAAGLSPFFIARAGLLCATISVVSCMILNIWIVP 140

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 KQ   + +  +    L+E +F  +   + + +   + + TL GI + D R    
Sbjct: 141 LSFHAFKQYEFQIRNRMAAFMLQEGVFTPVSPTMTVYVRSRDRDGTLHGIVVEDDRQPDN 200

Query: 184 HKIYYAQSGS-IDLDRQA-IILNDG---EVHRKSPISKDISIMKFKSYTLQ-TESANSST 237
                AQ G+ + +D Q  ++L DG   E+ RK   S  ++++ F   T+  T S     
Sbjct: 201 PSTVLAQRGTMLVVDNQPRVVLYDGSRQEIDRK---SGRLNVLTFSRNTIDLTSSRGDQA 257

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A + +L  LL+P+P      P     +  E  +RLT       F ++ +VA  + A
Sbjct: 258 RFRDATEMSLHELLHPDPQ--EVAPRDRGKFAVEAWRRLTAPFTAFSFAMVGLVAVLRGA 315

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYL 341
             R    I P    LS+        S ++  +  +N   IP++++
Sbjct: 316 FSRHGNIIRPAVAILSVV--SLLALSLMVQNLASRNTSLIPLMWV 358


>gi|58038773|ref|YP_190737.1| hypothetical protein GOX0298 [Gluconobacter oxydans 621H]
 gi|58001187|gb|AAW60081.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 390

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/318 (19%), Positives = 135/318 (42%), Gaps = 13/318 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR +  + L        + W+ Q L  +++V     SL + ++++  ++P+ + +
Sbjct: 16  LDRYILRQLLIALLALTGGATALIWLTQSLHFVSMVVQHGLSLRVFIQLTSLMLPSFIAV 75

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +        M  + EL ++   G S + L +P L  A    +  ++    + P
Sbjct: 76  ILPITTFLVVLFTYQRMVGDRELTVMRAAGRSPLELARPGLLCAFFSVVLCYVLTLWLAP 135

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  +   + +  +    L++ +F  L +D+ + +     +  L G+ + D RD  +
Sbjct: 136 VSYHAFHRYEFQIRNRMAAFLLQDGVFTSLSNDMTVYVRGRTSDGQLHGVLVEDDRDPDS 195

Query: 184 HKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           H    A+ G++ +  D+  ++L DG        +  ++++ F   T+   S+       +
Sbjct: 196 HTTILAERGTMVVVNDQPRVVLYDGSREEIDRHTGRLNVLTFGRNTIDLTSSRQHNHEDR 255

Query: 242 ANDQ-NLSFLLNPNPNNPNYRPELLETYRSE----FHKRLTQWLFPVIFGLISIVAADKR 296
             D+ +L  L +P+P+      E+ E  R +      +RLT  L  + F +I +V   + 
Sbjct: 256 DPDEMSLRELFHPDPH------EVSERDRGKNIVVGWRRLTSPLTALSFAMIGLVTVLRG 309

Query: 297 ALVRQRKKIHPIFISLSI 314
           A  R      P+   L++
Sbjct: 310 AFSRHGNITRPLIAILTV 327


>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 22/257 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YIL+ +  SF++S   I  +  +  +++  +L+     S  +LLKI GY +  +
Sbjct: 2   LKKLDRYILKSLIVSFVISFFVIAVVMLIGDLVKLYDLLFGKGSSFIVLLKILGYTVVFL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    V + ++ N+E+  I + G S   +  P    ++ + +FLF S   
Sbjct: 62  LAFIVPMALTIAINYVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLFYSIAF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTF-----SYLEENLFF-RLDDDLYIKISKYNPNNT-LQGI 173
           + PK R     LS + ++A TF     + L+ N+F+ ++D  ++IK    +P+   L+ +
Sbjct: 122 VAPKAR-----LSYRVEIAKTFRNKVYAALKPNMFYDKVDGVMWIK--NLSPDKKHLKDV 174

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           F       Q  KI+ A+ G        I+     V   SP         F  Y L   + 
Sbjct: 175 FF-----AQKGKIFLAKKGDFKDIPSGILAEFFNVKMYSPSKSGFEYGSFDRYELAFLTG 229

Query: 234 NSSTIVLKANDQNLSFL 250
                  K N  N  F+
Sbjct: 230 RG---YFKPNKNNTRFM 243


>gi|221639315|ref|YP_002525577.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
 gi|221160096|gb|ACM01076.1| Permease YjgP/YjgQ family protein [Rhodobacter sphaeroides KD131]
          Length = 364

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      T  V+  
Sbjct: 8   SLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAATIYVVNR 67

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   SA+    
Sbjct: 68  LSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSAEISQN 127

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
            T  +L +  F    D + + I +      L+ + +VD RD      Y A+
Sbjct: 128 ATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTAR 178


>gi|332558334|ref|ZP_08412656.1| permease [Rhodobacter sphaeroides WS8N]
 gi|332276046|gb|EGJ21361.1| permease [Rhodobacter sphaeroides WS8N]
          Length = 364

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 84/171 (49%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      T  V+  
Sbjct: 8   SLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAATIYVVNR 67

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   SA+    
Sbjct: 68  LSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSARSAEISQN 127

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
            T  +L +  F    D + + I +      L+ + +VD RD      Y A+
Sbjct: 128 ATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTAR 178


>gi|209964866|ref|YP_002297781.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209958332|gb|ACI98968.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 372

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 144/352 (40%), Gaps = 23/352 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR +  + +     +    W+ Q L+ + +V     SL I  +++    PT 
Sbjct: 1   MNQIDRYLLRNLAVATVFVTAGLSAAIWLTQSLRLVEMVVEGGASLGIFFRLALLTFPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           L ++ P         VL + NR   ++EL+++   G S + L +P L LA ++++  +  
Sbjct: 61  LSLILPVGL---LAAVLFTYNRLIMDSELVVMRAAGLSPMALARPALILAAVVALLCYTL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
                P  +  + +L    +  ++   L E  F  +   L + + +      L G+ I D
Sbjct: 118 TLFAGPAAQRELVRLRQAVRSDVSAVLLREGTFNDVGTGLTVYVRERGREGALSGLLIHD 177

Query: 178 SRDTQTHKIYYAQSG---SIDLDRQAIILNDGEV--HRKSPISKDISIMKFKSYT--LQT 230
            R         A+ G    +D     ++ N  ++  H+    ++    ++F  YT  LQ 
Sbjct: 178 LRSPGVATTVVAERGRLVEVDDVPHVVVFNGTQIKFHQDDGRTE---WLEFARYTVDLQA 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                    ++  +++L  L+N   ++P  R +     R+E H RL   L P+ F  + +
Sbjct: 235 LRKELGPRWIEPRERSLRDLVNLT-DDPLDR-QFFGRLRAELHSRLATPLLPLAFTAVGL 292

Query: 291 VAADKRALVR--QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
            A       R  Q ++I    +   +      G S ++ K   NP   P+LY
Sbjct: 293 AALLPGEFSRRGQGRRIALAAVGALVLQSAVLGISNLVGK---NPALTPLLY 341


>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
 gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
          Length = 376

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 96/215 (44%), Gaps = 2/215 (0%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P      +  V   
Sbjct: 13  ALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPVAAFAASVWVTNR 72

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +N  +EL ++  TGTS   + KP L   ++ ++ + I  +++ P   +T++Q  ++    
Sbjct: 73  LNSESELTVLRATGTSPWQMAKPALVFGLITAVMMSILTHVLLPASIATLEQRESEVARN 132

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLD 197
           +T   L E  F      +   I + +P+ TL  +F+ D R+      Y      +  D +
Sbjct: 133 VTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTYTGGKAYLVRDGE 192

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           R  +++ DG   R +  ++ +S   F  ++    S
Sbjct: 193 RTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISS 227


>gi|163746448|ref|ZP_02153806.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
 gi|161380333|gb|EDQ04744.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
          Length = 377

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 120/299 (40%), Gaps = 16/299 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL  +   F    L +V + W+ + +   + +    +S  + L+ +   +P +
Sbjct: 1   MARIDRYILSQLLVMFGFFALVLVALFWINRAVVLFDRLIGDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V   M+  +EL ++   G+    L +PV    + + + +    + 
Sbjct: 61  IVTVLPIATFAASVYVTNRMSGESELTVLQAAGSGPWRLARPVFVFGLCVGLMMTALSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +KQ  A+    LT   L E  F    D++       + +  L+ +F+ D R 
Sbjct: 121 LVPMAQGQLKQREAEISRNLTAQLLTEGTFLHPSDEVTFYTRAIDNDGVLRDVFLSDRRK 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                IY A    +  + D   +I+ +G   R       ++  KF+ ++       S+  
Sbjct: 181 ADEGVIYTAAEAYLARNGDNTTLIMLNGMAQRLDTEQNRLATAKFRDFSFDISPLVSTD- 239

Query: 239 VLKANDQNLSFLLNPN--------PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              A DQ++S ++ P+            +  P ++     E H RL Q LF ++  +I 
Sbjct: 240 --DATDQSVSSMVTPDLLWDWAGLAAQLDTAPGIIA---EELHSRLAQPLFCIVAAMIG 293


>gi|91206136|ref|YP_538491.1| putative permeases [Rickettsia bellii RML369-C]
 gi|91069680|gb|ABE05402.1| Putative permeases [Rickettsia bellii RML369-C]
          Length = 360

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 163/340 (47%), Gaps = 14/340 (4%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           + W+ Q+L+ + L     + ++  L +   ++PT+L ++ P    +    +  ++    +
Sbjct: 26  LVWITQVLKLLYLFDKGIKVMD-FLSLIILVLPTLLFILLPIITVITIIYIYNNLKIERQ 84

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G   + L  P L++A+++++  +   + + P     +K   +  +     S +
Sbjct: 85  LIILQTSGVGNLQLALPALYVALIVALLAYYISSTVMPLSHINLKSRLSFIKNNYISSMI 144

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILND 205
           EE  F ++  D+ + I K +  N ++G+ I D+R+T    + +A SG +++     I   
Sbjct: 145 EEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRNTDNPSVVFANSGILNIHENDPIFEL 204

Query: 206 GEVHRKS-PISKDISIMKFKSYTLQTESAN-----SSTIVLKANDQNLSFLLNPNPN-NP 258
            +  R+   I+ +I+ + F S  ++ ++ N      +T   +AN+  +  LL P  + NP
Sbjct: 205 SKGSRQEYDINGNITQLTFDSLMIKLQNDNPLISQRTTHNKEANEYYIEELLEPPVDLNP 264

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
             + +L+    +E H+R+   L+  +   +++    K    ++   +  +F +LS+    
Sbjct: 265 MKKIKLI----AEAHQRIIWPLYNFVLPFLALAVFLKYPYSKKTTFMPILFAALSVLIAT 320

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
              F+ + +   +N  +I   YL +F I SI L L I+K+
Sbjct: 321 SAHFT-LQNFASKNLAFITACYLNIFFILSIGLYLFIRKR 359


>gi|146277168|ref|YP_001167327.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555409|gb|ABP70022.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 376

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 91/190 (47%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MSRFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  ++  +++ +EL+++  TG S   L +PV+   +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYIVNRLSQESELVVMQATGFSAFRLARPVILFGLIVAMMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F      + + I + +    L  + +VD RD
Sbjct: 121 LVPASRATLSARSAEISENATARFLRDGEFLHPVRGVTLYIREISETGELNDLLLVDDRD 180

Query: 181 TQTHKIYYAQ 190
                IY A+
Sbjct: 181 RARSTIYTAR 190


>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
 gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
          Length = 376

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/215 (20%), Positives = 96/215 (44%), Gaps = 2/215 (0%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P      +  V   
Sbjct: 13  ALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPVAAFAASVWVTNR 72

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +N  +EL ++  TGTS   + KP +   ++ ++ + I  +++ P   +T++Q  ++    
Sbjct: 73  LNSESELTVLRATGTSPWQMAKPAMVFGLITAVMMSILTHVLLPASIATLEQRESEVARN 132

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLD 197
           +T   L E  F      +   I + +P+ TL  +F+ D R+      Y      +  D +
Sbjct: 133 VTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTYTGGKAYLVRDGE 192

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           R  +++ DG   R +  ++ +S   F  ++    S
Sbjct: 193 RTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISS 227


>gi|157826432|ref|YP_001495496.1| putative permeases [Rickettsia bellii OSU 85-389]
 gi|157801736|gb|ABV78459.1| Putative permeases [Rickettsia bellii OSU 85-389]
          Length = 360

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 163/340 (47%), Gaps = 14/340 (4%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           + W+ Q+L+ + L     + ++  L +   ++PT+L ++ P    +    +  ++    +
Sbjct: 26  LVWITQVLKLLYLFDKGIKVMD-FLSLIILVLPTLLFILLPIITVITIIYIYNNLKIERQ 84

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G   + L  P L++A+++++  +   + + P     +K   +  +     S +
Sbjct: 85  LIILQTSGVGNLQLALPALYVALIVALLAYYISSTVMPLSHINLKSRLSFIKNNYISSMI 144

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILND 205
           EE  F ++  D+ + I K +  N ++G+ I D+R+T    + +A SG +++     I   
Sbjct: 145 EEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRNTDNPSVVFANSGILNIYENDPIFEL 204

Query: 206 GEVHRKS-PISKDISIMKFKSYTLQTESAN-----SSTIVLKANDQNLSFLLNPNPN-NP 258
            +  R+   I+ +I+ + F S  ++ ++ N      +T   +AN+  +  LL P  + NP
Sbjct: 205 SKGSRQEYDINGNITQLTFDSLMIKLQNDNPLISQRTTHNKEANEYYIEELLEPPVDLNP 264

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
             + +L+    +E H+R+   L+  +   +++    K    ++   +  +F +LS+    
Sbjct: 265 MKKIKLI----AEAHQRIIWPLYNFVLPFLALAVFLKYPYSKKTTFMPILFAALSVLIAT 320

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIKKK 357
              F+ + +   +N  +I   YL +F I SI L L I+K+
Sbjct: 321 SAHFT-LQNFASKNLAFITACYLNIFFILSIGLYLFIRKR 359


>gi|154253775|ref|YP_001414599.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157725|gb|ABS64942.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 388

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/302 (19%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +KS   Y+       F+++ + +  I W+ Q L+ ++++ +  ++L    +++   +P+ 
Sbjct: 2   LKSLSRYLFFQTLGPFVVASVVLSGIIWLTQALRMLDVLITQGQTLLTFFELTVLALPST 61

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           L +V P   FC  + + + L S   ++E++++   G SR  +  P+L +A+  S+ +   
Sbjct: 62  LMIVLPISLFCAVLYSLHKLIS---DSEIVVMFAAGVSRWVVALPLLAIAMGTSVIILAF 118

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
              I P     +K    + +  +  + + E  F      L + + +   + T  G+ + D
Sbjct: 119 SIYIAPAGMRELKSRLVEIRSDVATAMIREGTFSNPATGLTVFVRERAADGTTYGVLVHD 178

Query: 178 SRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKF-----KSYTLQT 230
            R       Y A++GS+    +   +++ +G + R S    + S   F      +Y L  
Sbjct: 179 GRIPSAPVTYMAETGSLVRGPNGPLLVMFNGNIQRASRSGTETSAATFLYFDKYTYDLSQ 238

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              +  T+  +  ++    L+NP  ++  Y  +  +   ++ H+RL +  +PV+  LI +
Sbjct: 239 YMEDEPTLSYEGRERYFHELVNPASDD-LYGQQNRDKLLADAHERLVEGFYPVMLTLIGL 297

Query: 291 VA 292
            A
Sbjct: 298 AA 299


>gi|110680306|ref|YP_683313.1| hypothetical protein RD1_3119 [Roseobacter denitrificans OCh 114]
 gi|109456422|gb|ABG32627.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/351 (20%), Positives = 150/351 (42%), Gaps = 29/351 (8%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP----TVLPMVTPFCFAMETTN 75
            L +V I W+ + +   + + S  +S  + L+ +   +P    TVLP+ T F  A+  TN
Sbjct: 20  ALVLVAILWINRGVSLFDELISDGQSALVFLEFTALGLPKLITTVLPIAT-FAAAVYVTN 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               MN  +EL ++  TG+  + L +PVL   +++ +   +  +++ P  +  +     +
Sbjct: 79  ---RMNNESELTVLQATGSGPVRLARPVLVFGLIVFLMASMLHHVLMPLAQQQLGHRQNE 135

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI- 194
                T   L E  F    + +     + + +  L+ +F+ D R  +   IY A    + 
Sbjct: 136 IAQNATSRLLTEGRFLHPSEGVTFYTQEIDDDGVLRDVFLSDRRSVEEGVIYTAAHAYLI 195

Query: 195 -DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNP 253
            D +R ++I+ DG   R +  +  ++   F+ ++    +   + +  + +   ++     
Sbjct: 196 RDDERTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDVSQRLDPDKMTTFQLL 255

Query: 254 NPNNPNYRPELLETYRS------EFHKRLTQWLFPVIFGLIS----IVAADKRALVRQRK 303
            P +   R    ET RS       FH R+   LF ++  LI     ++    R  V   +
Sbjct: 256 TPWDELSR----ETGRSIGKITQSFHARIADPLFCIVAALIGFSTLMIGGFSRFGV--WR 309

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++   F+ L    G+    S +   + ++P   P+LYL  F  + + + M+
Sbjct: 310 EVGVAFVLLVAIDGL---RSTLQSPVRRDPELWPLLYLPTFISALLVIAML 357


>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
 gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
          Length = 379

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 2/229 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F    + +   I    P+ TLQ +F+ D RD
Sbjct: 121 LLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                 Y +    +  + D   +IL DG   RK   +  +S   F  ++
Sbjct: 181 PSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFS 229


>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
 gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
          Length = 376

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 100/211 (47%), Gaps = 19/211 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + WV + +   + + +   S  I+L+ +   +P V
Sbjct: 1   MQRFDRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLINDGHSARIVLEFTALSLPAV 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           + +V P   F  A+  TN L+    ++EL ++  TG S   L +PVL   I++++ + + 
Sbjct: 61  IALVLPMATFAAAVYVTNRLSG---DSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQ---LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
            +++ P+   ++KQL  + Q    +++   L E  F      +   I    P  TLQ + 
Sbjct: 118 THVLVPQ---SLKQLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVL 174

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILND 205
           + D R+ +   IY A       DR  +I +D
Sbjct: 175 LSDRREPEREVIYTA-------DRAYLIRDD 198


>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
 gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
          Length = 388

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 2/234 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S  +  + +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFFEFTALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +N  +EL ++  TGTS   + KP L   I+ +I + I  + 
Sbjct: 61  IRMVLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKPALAFGIITAIMMSILTHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T++Q   +    +T   L E  F      +   I + +P+ TL  +F+ D R+
Sbjct: 121 LLPTSIATLEQRETEISRNVTAKLLSEGDFLHPTRGVTFYIGRIDPDGTLNDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                 Y      +  D DR  +++ DG   R    ++ +S   F  ++    S
Sbjct: 181 PDQVVTYTGGKAYLVRDEDRTHLVMVDGMSQRIDMQTRRLSSTIFSDFSYDISS 234


>gi|163792838|ref|ZP_02186814.1| Predicted permease [alpha proteobacterium BAL199]
 gi|159181484|gb|EDP65996.1| Predicted permease [alpha proteobacterium BAL199]
          Length = 369

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 74/368 (20%), Positives = 152/368 (41%), Gaps = 22/368 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVF----IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           + I R +    L + +FIV     + W+ Q L+ ++L+ +    +   + ++  L+PT L
Sbjct: 1   MRITRYLAGQILTAMVFIVVSMTCVIWLSQSLRFVDLIVNRGLPIPSFVYLTLMLMPTWL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P      T  V   +  + EL+++   G S + L  P + +A+   +  ++    +
Sbjct: 61  SIVLPIAAFAATVFVYNKLTNDRELVVLSAAGLSPLRLAGPAMVVAVATMLATYLMTLYL 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      K+L  + +       L E  F  + D L + +        L GI + D  + 
Sbjct: 121 VPMSYRGFKELQFQIRHNFDHLVLREGEFRSIGDGLTVYVRAREDTGQLAGIVVHDQSNA 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +      A+ G++    +   +++ +G    +   +  +S++ F  YT+    A    + 
Sbjct: 181 KKTVTLVAERGALITAPEGPRVVMANGSRQERDVETGRVSVLYFDRYTIDL-GAMREEVQ 239

Query: 240 LKANDQNLSF---LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               DQN  F   LL+P     +  P+  + Y +E H+RLT  L  +    I +      
Sbjct: 240 RTIRDQNELFIDDLLHPTEQITD--PKNFDEYIAEGHQRLTSPLLALSLTAIGVAVLLSG 297

Query: 297 ALVRQRKKIHPIFISL--SISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCISSI 349
              R+ + I  I   L    +  +  G  Y++ +    P  +PI++      FL  ++S+
Sbjct: 298 EFSRRGQTIRIITAVLLAGCAEAMGLGSKYLVVRY---PSMVPIMWFAVIVPFLLALASM 354

Query: 350 FLLMIKKK 357
               +K++
Sbjct: 355 TQRRLKRR 362


>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 359

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 149/331 (45%), Gaps = 44/331 (13%)

Query: 49  LLKISGYL---IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L++  GY+   IP +    TP    + T  V + MNRN ELL +  +G S   L+KPV+ 
Sbjct: 46  LIQGLGYILLKIPFMFVQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVL 105

Query: 106 LAILLSI-FLFISENIIEPKCRST--IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           + ++L++  +F+ E I+         I+  + K    +  ++  EN++ R D +  I I+
Sbjct: 106 VGVILAMTMIFLGETIVPYTMAKANHIRSSTLKKNKKIYATW--ENIWIR-DGNKIIHIN 162

Query: 163 KYNP-NNTLQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAI--IL---NDGEVHRKSPIS 215
            +NP +N++ GI I     D +      A++G  D  +  +  +L   N G+ H     +
Sbjct: 163 YFNPADNSISGITITSFGADFKIATRVDAENGRFDSGQWQLSNVLEQNNPGDEH-----N 217

Query: 216 KDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN--PNPNNPNYRPELLETYRSEFH 273
            DI     K++ L  E A+  T+  K +  ++  L        N  Y       Y  +F 
Sbjct: 218 ADIQFYDHKAFALDVEPADLKTVAKKTDQMSIQELKAYIHKIENEGYDA---THYIVDFW 274

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQN 332
            ++    FP+I  ++++V A    L   ++      + L I+ G+   F Y ++H    +
Sbjct: 275 AKIA---FPIICLVMALVGAGAGMLSAAKEN-----MPLGIALGIGVAFCYWVVHGFCTS 326

Query: 333 PYYIPILYLFL---------FCISSIFLLMI 354
             Y  ++  FL          C+++IFL+ +
Sbjct: 327 LGYGGMIPPFLSAWTADLIFICLTTIFLVTV 357


>gi|254510429|ref|ZP_05122496.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
 gi|221534140|gb|EEE37128.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
          Length = 379

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 6/184 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +   + V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFDRVISGGQSAFVFLEFTALTLPTL 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           +  V P   F  A+  TN L+   R +E+ ++  TG+S   L + VL   +   + + + 
Sbjct: 61  IRTVMPMAVFAAAVYATNRLS---RESEMTVMLATGSSPWRLARAVLMFGLSAGLMMAVI 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
              + P     ++Q  A+    +T   L E  F    D + + IS+ + + TL  +F+ D
Sbjct: 118 SVFLRPASVERLEQRQAEVAGDVTAQLLNEGEFLHPADGVTVYISRIDLDGTLHEVFVSD 177

Query: 178 SRDT 181
            RDT
Sbjct: 178 RRDT 181


>gi|317493503|ref|ZP_07951924.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918446|gb|EFV39784.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 356

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 109/254 (42%), Gaps = 20/254 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+  I R  ++   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLIEHYIMAEIRRLVVIIVGFLIFIFASYSAQRYLTEAANGTLALEVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  +  ++E+  I   G S I L K V+ LAI LSI + +    
Sbjct: 61  LEMLLPVGLYVSVGVALGQLYTDSEITAISAIGASPIRLYKAVMLLAIPLSILVTLMSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L  S+L   +F   D    I   + NP+ N L  + I  S 
Sbjct: 121 ARPWAYAQIYQLEQQSQSELDVSHLRAKMFNINDSGRMILSEEINPDSNHLTDVLIYTSS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T  +Y A++               +V   SPI+  + +     YTL+ +  + S  V
Sbjct: 181 GNKT-SVYRAKT--------------VDVTNPSPITPSVILHSGTGYTLRHQGTDDSERV 225

Query: 240 LKANDQNLSFLLNP 253
            +    NL+  L P
Sbjct: 226 YR----NLTLDLKP 235


>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
 gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
          Length = 379

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 120/312 (38%), Gaps = 36/312 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + W+ + +   + + ++  +  I L+ +   +P V
Sbjct: 1   MQRFDRYMLSQLMVVFGFFALVLVMVYWLNRSVGLFDELIANGHTAGIFLEFTLLALPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   M+  +EL ++  TG S   L +PVL    ++   + I  ++
Sbjct: 61  VAIVLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++  ++   +++   L E  F      +   I    P   L+ +F+ D RD
Sbjct: 121 LVPASIGQLRERESEISGSVSARLLHEGTFLHPTRGVTFYIRDITPEGELRDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y AQS        A +L D +          +++    + TL+ E    ST   
Sbjct: 181 PDRAIAYTAQS--------AYVLRDDD-------GPKLTMRSGLAQTLRAEDQTLSTTDF 225

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYR--------------------SEFHKRLTQWL 280
           +    ++S L+  N   P  R   + T+                      E H R  Q L
Sbjct: 226 ENLTYDISGLVTQN-GPPRRRARQISTWELLTDTEAVSEEVKDSVGEVLEEAHMRFEQPL 284

Query: 281 FPVIFGLISIVA 292
             V+  LI   A
Sbjct: 285 LCVVAALIGYAA 296


>gi|89054305|ref|YP_509756.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
 gi|88863854|gb|ABD54731.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
          Length = 371

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 122/303 (40%), Gaps = 25/303 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ YILR +   F    L +V + WV Q  +  + + +  +++ + L+ S   +P +
Sbjct: 1   MGQYDRYILRQLVALFGFFSLVLVSVYWVNQAARLFDRLIADGQNIGVFLEFSALTLPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T  +   M   +EL+++   G S + L++PV     LL+I L +  NI
Sbjct: 61  VQLILPVSAFVATLYIFNRMISESELVVLQTAGLSALRLLRPVFVFGCLLAILLAVLVNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R    Q  A+ Q  LT  +L    F      L + I + +     + +F+ D+  
Sbjct: 121 LAPTARGQFTQRQAEVQDDLTGRFLRAGEFIHPAAGLTVYIREISELGEFRDLFLQDAST 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y A +  +        +++ DG        +  +S + F  +T    +   +  
Sbjct: 181 PGVEVTYTANTALLVRSDTGPRLVMFDGVAQTLDLDTGRLSTISFSDFTYSVGTLGGTGA 240

Query: 238 -----------IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                      ++L+AN Q    L  P           L     E H RL Q LF +   
Sbjct: 241 RQIDVRELPTPLLLRANQQIAGALNLP-----------LSHLVFEGHDRLAQSLFVLFVP 289

Query: 287 LIS 289
           LI+
Sbjct: 290 LIA 292


>gi|323978945|gb|EGB74025.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 356

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 121/286 (42%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI     + + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSVQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L  + I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|86138693|ref|ZP_01057266.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85824753|gb|EAQ44955.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 387

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 128/303 (42%), Gaps = 24/303 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V + WV + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSRFDRYVLSQYLLFFSFFALILVAVFWVNRAVVLFDRLIGDGQTAIVFLEFTALALPNL 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           + MV P   F  A+  TN L S    +EL ++  TGTS   + +P L   ++ ++ + + 
Sbjct: 61  IRMVLPVAVFASAVWVTNRLQS---ESELTVLRATGTSPWQMARPALAFGVITALMMSVL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLA---LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
            + + P   S+I QL+ + Q     +T   L E  F      +   I + + N TL  +F
Sbjct: 118 THFLLP---SSISQLALREQEVSRNVTAKLLTEGHFLHPVKGVTFYIRQIDSNGTLNDVF 174

Query: 175 IVDSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           + D RD      Y      +  D +   +I+ +G   R    ++ +S   F  ++    S
Sbjct: 175 LSDRRDPNQTMTYTGARAFLVRDGENTHLIMVNGMAQRLEHRTQQLSTTNFSDFSYDISS 234

Query: 233 -ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR-----SEFHKRLTQWLFPVIFG 286
            AN ST  ++   +  S+ L  +  N +    L E Y       EFH R  + L  V   
Sbjct: 235 LANQSTAAIRNIREISSWELLQDRENIS----LTEGYSRGALAEEFHLRFARALICVAVA 290

Query: 287 LIS 289
           LI 
Sbjct: 291 LIG 293


>gi|24114288|ref|NP_708798.1| hypothetical protein SF3027 [Shigella flexneri 2a str. 301]
 gi|30064335|ref|NP_838506.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|24053444|gb|AAN44505.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042592|gb|AAP18316.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|281602371|gb|ADA75355.1| putative permease [Shigella flexneri 2002017]
 gi|313648098|gb|EFS12544.1| hypothetical protein SF2457T_3698 [Shigella flexneri 2a str. 2457T]
 gi|332752656|gb|EGJ83041.1| hypothetical protein SFK671_3614 [Shigella flexneri K-671]
 gi|332753042|gb|EGJ83426.1| hypothetical protein SF434370_3221 [Shigella flexneri 4343-70]
 gi|332765462|gb|EGJ95680.1| hypothetical protein SF293071_3544 [Shigella flexneri 2930-71]
 gi|332999939|gb|EGK19522.1| hypothetical protein SFK218_4003 [Shigella flexneri K-218]
 gi|333014895|gb|EGK34240.1| hypothetical protein SFK304_3820 [Shigella flexneri K-304]
          Length = 356

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A  GS+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRA--GSVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
 gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
          Length = 379

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 2/229 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F      +   +   +P+ TL  +F+ D RD
Sbjct: 121 LLPASLAQMQLREAELSRSVSAKLLNAGNFLHPSAGITFFVGSIDPDGTLNNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                 Y +    +  + D   +IL DG   RK   +  +S   F  ++
Sbjct: 181 PSVEITYTSDRAYLVREDDMAHLILVDGLAQRKEAHNDRLSTTAFADFS 229


>gi|332754457|gb|EGJ84823.1| hypothetical protein SF274771_3587 [Shigella flexneri 2747-71]
          Length = 356

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A  GS+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRA--GSVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|94263395|ref|ZP_01287209.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456231|gb|EAT06365.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 28/277 (10%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    M    
Sbjct: 20  FFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAMMAVII 79

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
             T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + QL   
Sbjct: 80  AFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMDQL--- 136

Query: 136 AQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDTQTHKIYYAQ 190
             + L   ++EE +    F     D+ + +   +P+     G+++ D RD        AQ
Sbjct: 137 -MIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISAQ 195

Query: 191 SGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQ------TESANSSTIVL 240
            G++  D    R  + L+DG +HR S  +K  +I  FK Y L+      T      + + 
Sbjct: 196 GGNLRADPAAGRVVLSLSDGSLHR-SAGAKSQTIF-FKHYNLEIPLDSPTLGPPGRSSMT 253

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           +A  +  +  L P  +   YR      Y  E+H+RL 
Sbjct: 254 QAQLRQRATELGPE-HPRQYR------YIGEYHQRLA 283


>gi|94266927|ref|ZP_01290580.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452379|gb|EAT02998.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 120/277 (43%), Gaps = 28/277 (10%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    M    
Sbjct: 20  FFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAMMAVII 79

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
             T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + QL   
Sbjct: 80  AFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMDQL--- 136

Query: 136 AQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTL-QGIFIVDSRDTQTHKIYYAQ 190
             + L   ++EE +    F     D+ + +   +P+     G+++ D RD        AQ
Sbjct: 137 -MIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISAQ 195

Query: 191 SGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQ------TESANSSTIVL 240
            G++  D    R  + L+DG +HR S  +K  +I  FK Y L+      T      + + 
Sbjct: 196 GGNLRADPAAGRVVLSLSDGSLHR-SAGAKSQTIF-FKHYKLEIPLDSPTLGPPGRSSMT 253

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           +A  +  +  L P  +   YR      Y  E+H+RL 
Sbjct: 254 QAQLRQRATELGPE-HPRQYR------YIGEYHQRLA 283


>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 370

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 112/264 (42%), Gaps = 42/264 (15%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
            LV  S   L +L ++    +P ++ +  P      T   L  ++ N+E+  +   G   
Sbjct: 45  RLVEGSVPPLTVL-RLLVLDLPEMVVLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPF 103

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
             + +P+L + + +S+  F   N++ P  +  I+Q+  +A LA   + ++ ++FF+ +D+
Sbjct: 104 SRIFRPLLLVGLAMSLSAFFISNVLLPASKQQIRQIDQQALLAQATTPVQYDVFFKTEDN 163

Query: 157 LYIKISKYNPN-NTLQGIFI--VDSRDTQTHKIYYAQSGSIDLDRQAII------LNDGE 207
           L+  I + +P  NT+Q + I  VD      +++       + L  QA+       L++G 
Sbjct: 164 LWFFIRQVDPRLNTMQDVTILRVDPLPGGKYQLV-----EVTLAAQAVWNGLEWSLSEGA 218

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLE 266
            H   P    I+   F    LQ               Q+L+ L+ P  P +    PEL E
Sbjct: 219 THLYGPTGLSIAEQTFHRKPLQV-------------SQDLAALMQPPVPPSELSLPELAE 265

Query: 267 -------------TYRSEFHKRLT 277
                          R+EFH R +
Sbjct: 266 RISRLARSNLNTQALRTEFHMRFS 289


>gi|301325676|ref|ZP_07219137.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847531|gb|EFK75291.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|323966511|gb|EGB61944.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251764|gb|EGE63450.1| hypothetical protein ECSTEC7V_3616 [Escherichia coli STEC_7v]
          Length = 356

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L  + I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|254488881|ref|ZP_05102086.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
 gi|214045750|gb|EEB86388.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
          Length = 376

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/362 (19%), Positives = 148/362 (40%), Gaps = 13/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSKFDRYMLSQFLTLFSFFALVLVAIFWINRAVILFDRLIGDGQTALVFLEFTVLGLPRL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V+  M   +EL ++  TGT    L +PV    I +++ + +  ++
Sbjct: 61  ITTVLPIATFAGAAYVINRMTSESELTVLQATGTGPWRLARPVFAYGICVALMMSVLTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++ + Q  A+    +T   L E  F      +         +  L+ +F+ D R+
Sbjct: 121 LVPMTKAELNQREAEISQNVTARLLTEGTFLHPTSKVTFYTRLIGNDGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                IY A    +  + +   +I+ DG   R     K ++  KF+ ++    +  ++ST
Sbjct: 181 PDEGVIYTAAEAYLVRNGNGTTLIMVDGLAQRLQVEGKQLATAKFRDFSFDISALVSNST 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYR-PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++ D  ++F L  N ++   +  +       E + R    LF +I  +I        
Sbjct: 241 DESQSIDSMVTFDLLKNWDDLAAKTGQTHGDIAEEVNARFADPLFCIIAAMIGYATLIMG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFW---GF-SYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              R       ++  + I+FG+     GF S ++  + Q+    P+LY+     + + L 
Sbjct: 301 GFSR-----FGVWREIVIAFGLLIAIDGFSSTLVETVRQDASRWPVLYVPSLVGAMLVLA 355

Query: 353 MI 354
           MI
Sbjct: 356 MI 357


>gi|108761666|ref|YP_631128.1| hypothetical protein MXAN_2917 [Myxococcus xanthus DK 1622]
 gi|108465546|gb|ABF90731.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 370

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 126/310 (40%), Gaps = 31/310 (10%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+  + +V+Q L+  +++  S+ +L  + ++  YL P  L M  P  F +     L  + 
Sbjct: 22  FMFLLLFVMQFLRGTDVLLGSSVTLVDMARLLAYLAPHFLMMALPIAFLLAILLGLGRLG 81

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + EL+ +   G   + L+   + +A+ LS+ + +  +  +P   + +K L ++      
Sbjct: 82  EDRELVALQALGIGPVRLLAAPMGIAVALSVLMLVITSTAQPWGLTGLKVLVSEVIRKNA 141

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI 201
              ++  +F+    +L +   + + +     + + D R+  +  +  AQ G +       
Sbjct: 142 VGDVKSGVFYEDLSNLTLYAEQVSADGKWTNVLLHDDREANSPLLVLAQRGQVGTSTSGE 201

Query: 202 IL----NDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
           +L      GEVHR +   +++ SI++F       + A  S  V  +  +   F  +    
Sbjct: 202 VLRFALEAGEVHRSAGRETEEYSIIRF-------DQAEISVGVGASMGKRSRFSYSREEL 254

Query: 257 NPNYRPELLET-------------YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            P    EL+E              YR   H RL   L P+ F L+    A  R   RQ  
Sbjct: 255 TPG---ELMEAAREAEAQGEDARMYRMALHSRLGNALAPIAFALLGTPLAMGR---RQSG 308

Query: 304 KIHPIFISLS 313
           +     ++L 
Sbjct: 309 RAWGYLLTLG 318


>gi|84500989|ref|ZP_00999224.1| Predicted permease [Oceanicola batsensis HTCC2597]
 gi|84391056|gb|EAQ03474.1| Predicted permease [Oceanicola batsensis HTCC2597]
          Length = 385

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 87/189 (46%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ Q ++  + +    ++  + L+ +   +P V
Sbjct: 1   MARFDRYLLSQFMVLFGFFSLVLVSIYWINQAVRLFDALIGDGQTAWVFLEFTALTLPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   ++  +EL+++ +TG S   L +PVL+  +++ + + +  + 
Sbjct: 61  IRIVLPMATFAAVVYVTNRLSSESELVVMQSTGFSPWRLARPVLWFGVIVGLIMSVMSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +++     +  LT   L E  F      +   I + + + TL+ +F  D RD
Sbjct: 121 LVPVSISRLQERQDDLRQDLTARLLTEGSFLHPVAGITFYIRQIDADGTLRDVFFSDRRD 180

Query: 181 TQTHKIYYA 189
            ++ + + A
Sbjct: 181 ARSPQTFTA 189


>gi|260432791|ref|ZP_05786762.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416619|gb|EEX09878.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
          Length = 379

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +     V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFERVISGGQSAMVFLEFTALTLPTL 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           +  V P   F  A+  TN L+   R +E+ ++  TG+S   L + V+   ++  + + + 
Sbjct: 61  IRTVMPMAVFAAAVYATNRLS---RESEMTVMLATGSSPWRLSRGVILFGLIAGLMMAVI 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
             ++ P     +++  A+    +T   L E  F      + + I + + + TL  +F+ D
Sbjct: 118 SVVLRPASVEQLERRQAEVAGDVTAQLLNEGEFMHPAPGVTVYIGRIDLDGTLNEVFVSD 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            RD      Y + S  +  D   +  ++ DG   R       +S  +F     Q  S + 
Sbjct: 178 RRDRNNPATYSSTSAYLLSDDTGVHLVMVDGVALRLDREGNTLSSTQF-----QDASYDV 232

Query: 236 STIVLKANDQNLSFLLNPNPN----------NPNY-RPELLETYRSEFHKRLTQWL 280
           S +  K +    S    P             +  Y R EL+E    E H+R + W+
Sbjct: 233 SELTRKGDIGRRSIEAVPTSELLRDLDAVAASDGYPRGELVE----ELHQRFS-WI 283


>gi|56698597|ref|YP_168974.1| hypothetical protein SPO3780 [Ruegeria pomeroyi DSS-3]
 gi|56680334|gb|AAV97000.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 104/237 (43%), Gaps = 18/237 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIA----WVIQILQRINLVSSSTESLNILLKISGYL 56
           M  F+ Y LR      L+ C F  F+     W+ + +   + + SS ++  + L+ +   
Sbjct: 1   MSKFDGYFLR----QLLVLCGFFAFVLVGVFWISKAVSLFDRLISSGQTAMVALEFTALT 56

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +PT++  V P      T  V   +NR +E+ ++  TG+S   L +PV+   ++ +  L  
Sbjct: 57  LPTLVRTVMPMAAFCATVYVTNRLNRESEMTVMLATGSSPFRLARPVILFGLVCAAMLAT 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
               + P     ++   A+    +T   L +  F      + + I K + + TL  +++ 
Sbjct: 117 ITLYLRPAAMLRLEARQAEVAGDMTAQLLNDGQFMHPVKGVTVYIGKIDRDGTLNDVYLS 176

Query: 177 DSRDTQ------THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           D R  +      + K + A+SG    ++ A+++ +G   +     + +S   F+ ++
Sbjct: 177 DRRAPERVVTYTSSKAFLARSG----EQIALVMVEGTALQMETGRRTLSTTVFRDFS 229


>gi|258591111|emb|CBE67406.1| putative Permease YjgP/YjgQ family protein [NC10 bacterium 'Dutch
           sediment']
          Length = 426

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 147/331 (44%), Gaps = 28/331 (8%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++LR +  SF +      F+  + Q+++ ++L+ +    + ++L++  Y++P    +  P
Sbjct: 36  HLLREMAASFALGLGTFTFVLLMDQMMRLMDLIINKGAPVGVVLRLISYILPFSFTVTIP 95

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP-VLFLAILLSIFLFISENIIEPKC 125
               +        ++   E +++  +G S   L+ P VLF  +     L+IS  +++P  
Sbjct: 96  MSVLLAVLATYGRVSSEGEAIVLKTSGLSLYRLMAPGVLFGVVATFATLWIS-TLVQPSS 154

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTH 184
               K L+ +       + LE  +F      L I + +    + TL GI ++D R+    
Sbjct: 155 TKAFKTLTHQLYHTHVLTALENGIFNTEYPGLAIYVDRSEKTDGTLHGILVIDQRNQADQ 214

Query: 185 KIYYAQSGSI---DLDRQAII---LNDGEVHRKSPISKD-ISIMKFKSYTLQ--TESANS 235
           ++  AQ G +   D + +A I   L+ G +   S    D    + F++Y LQ  T    +
Sbjct: 215 RLIIAQEGKLLNKDDETEAPIGLQLSRGTLQISSRDHPDRYRNLDFETYDLQILTGGTVA 274

Query: 236 STI--VLKANDQNLSFLLNP----NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            T+  V ++ + N+  L       N +     P      + E HK+ +    P+   ++S
Sbjct: 275 ETVARVRQSKEMNIGELRTEIARLNKDGGKAWP-----LQVELHKKFS---LPIACLILS 326

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           ++ A     +R +K    + ++LS++F VF+
Sbjct: 327 MIGAP--LAMRIKKAGRGVSLALSVAFAVFY 355


>gi|215488306|ref|YP_002330737.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
 gi|215266378|emb|CAS10815.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
          Length = 356

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKQFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|300824070|ref|ZP_07104191.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669797|ref|ZP_08370642.1| putative permease [Escherichia coli TA271]
 gi|331679054|ref|ZP_08379726.1| putative permease [Escherichia coli H591]
 gi|300523460|gb|EFK44529.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|324119792|gb|EGC13672.1| permease YjgP/YjgQ family protein [Escherichia coli E1167]
 gi|331062710|gb|EGI34624.1| putative permease [Escherichia coli TA271]
 gi|331073119|gb|EGI44442.1| putative permease [Escherichia coli H591]
          Length = 356

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
 gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
          Length = 389

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI + I   F +      F+  + ++L+  ++V +    L  +L++  YL+P+ L +  P
Sbjct: 8   YIFKEIPPPFFLGVATFTFVLLMGRLLRLTDMVVTKGVPLGDVLRMILYLLPSFLLVTIP 67

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENIIEPKC 125
             F +        ++ ++E++ +  +G S   L+ PV  LA++  +   FI+   + PK 
Sbjct: 68  MAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPPVFSLAVITYLAGAFITIYAV-PKG 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTH 184
            S  K L            ++E +F      + I    Y+     + GI I D RD    
Sbjct: 127 NSAFKDLLVTVVENRVSLGVKEKVFNGDFPGIVIYCDGYDERTQVMSGIIIQDERDPLEP 186

Query: 185 KIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               A  G+I+ D  +    + L  G +HR +   +   +++F  Y L    + +S  V 
Sbjct: 187 STIMAGHGTINADHASRSVRLHLASGSIHRTAG-REGYRLVQFSDYDLHINLSQASQAV- 244

Query: 241 KANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           K +++++S   L  N N+ ++  +     R E+H+R +     +IF L+ +
Sbjct: 245 KRDERDMSLAELRTNWNSNHFDNKGRLEMRLEYHRRFSLPFACLIFTLVGM 295


>gi|332998925|gb|EGK18516.1| hypothetical protein SFVA6_3890 [Shigella flexneri VA-6]
          Length = 356

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|331674536|ref|ZP_08375296.1| putative permease [Escherichia coli TA280]
 gi|331068630|gb|EGI40025.1| putative permease [Escherichia coli TA280]
          Length = 356

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|194426331|ref|ZP_03058886.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415639|gb|EDX31906.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183223|dbj|BAG66768.1| putative permease [Escherichia coli O111:H-]
          Length = 356

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I +   +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILLQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|110643219|ref|YP_670949.1| putative permease [Escherichia coli 536]
 gi|170683865|ref|YP_001745245.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|194436786|ref|ZP_03068886.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218706607|ref|YP_002414126.1| hypothetical protein ECUMN_3464 [Escherichia coli UMN026]
 gi|256024434|ref|ZP_05438299.1| hypothetical protein E4_13749 [Escherichia sp. 4_1_40B]
 gi|293406597|ref|ZP_06650523.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382336|ref|ZP_06991933.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300900317|ref|ZP_07118496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312968688|ref|ZP_07782897.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331684626|ref|ZP_08385218.1| putative permease [Escherichia coli H299]
 gi|110344811|gb|ABG71048.1| putative permease [Escherichia coli 536]
 gi|170521583|gb|ACB19761.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
 gi|194424268|gb|EDX40255.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218433704|emb|CAR14621.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli UMN026]
 gi|291426603|gb|EFE99635.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298277476|gb|EFI18992.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300356207|gb|EFJ72077.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312286906|gb|EFR14817.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331078241|gb|EGI49447.1| putative permease [Escherichia coli H299]
          Length = 356

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|119356768|ref|YP_911412.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354117|gb|ABL64988.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 442

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 15/214 (7%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L +++  S +++   +PM       M       +M   +E+ I   +G S   L+ PVL 
Sbjct: 50  LELVVVQSAWMVSFTIPMAVLIAVVM----AFGAMTNASEITIFRASGISLYRLMAPVLL 105

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
            A LLS+      N++ P+     K L A    +     L EN F  L D   I + + +
Sbjct: 106 AATLLSLVAERFNNVVLPEANYKAKSLMADIVKSKPVFGLTENAFSTLIDGYSILVRQTD 165

Query: 166 PN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHR-KSPISKDIS 219
           P    ++GI I D        I  A+SG ++         I L +GE+H  + P  K+  
Sbjct: 166 PETGAIRGIVIYDFTRPDFRTIVTAESGGVNFSSDYHYLIITLENGEIHEIQQPQHKEYR 225

Query: 220 IMKFKSYTLQTESAN-----SSTIVLKANDQNLS 248
            M FK +    ES+      S    ++++D++LS
Sbjct: 226 KMSFKKHRFVFESSGFGFNRSVESAIRSDDRDLS 259


>gi|157804262|ref|YP_001492811.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
 gi|157785525|gb|ABV74026.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
          Length = 360

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/236 (19%), Positives = 114/236 (48%), Gaps = 4/236 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y ++ I    ++    +  I W+ Q+L+ + L     + ++    +   ++PT+
Sbjct: 1   MLLYEKYFIKNILPLLIVVTFSVTSIVWITQVLKLLYLFDKGIKVMD-FFSLIVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +++I+  +G   + L  P L++A+++ +  +   + 
Sbjct: 60  LFILLPVITVIAVIYIYNNLKVERQIIILQASGVHNVQLALPALYVALIVMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K   +  +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 120 IMPLSHINLKSRLSFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSIDL-DRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                + +A SG++++ D   I  LN G + ++  I+ +++ + F S  ++ ++ N
Sbjct: 180 ADNLSVVFADSGTLNIYDNSPIFELNKG-LRQEHDINGNLTQLTFNSLMIKLQNDN 234


>gi|193067274|ref|ZP_03048242.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209920456|ref|YP_002294540.1| hypothetical protein ECSE_3265 [Escherichia coli SE11]
 gi|218555554|ref|YP_002388467.1| hypothetical protein ECIAI1_3129 [Escherichia coli IAI1]
 gi|218696689|ref|YP_002404356.1| hypothetical protein EC55989_3396 [Escherichia coli 55989]
 gi|260857120|ref|YP_003231011.1| hypothetical protein ECO26_4088 [Escherichia coli O26:H11 str.
           11368]
 gi|260869742|ref|YP_003236144.1| hypothetical protein ECO111_3809 [Escherichia coli O111:H- str.
           11128]
 gi|293449328|ref|ZP_06663749.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300815538|ref|ZP_07095762.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|192959231|gb|EDV89666.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209913715|dbj|BAG78789.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353421|emb|CAU99487.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
 gi|218362322|emb|CAQ99944.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
 gi|257755769|dbj|BAI27271.1| conserved predicted membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257766098|dbj|BAI37593.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|291322418|gb|EFE61847.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300531467|gb|EFK52529.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201894|gb|EFW76469.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323173775|gb|EFZ59404.1| hypothetical protein ECLT68_2093 [Escherichia coli LT-68]
 gi|323178689|gb|EFZ64265.1| hypothetical protein ECOK1180_2421 [Escherichia coli 1180]
 gi|323183569|gb|EFZ68966.1| hypothetical protein ECOK1357_3349 [Escherichia coli 1357]
 gi|323946693|gb|EGB42714.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018177|gb|EGB87396.1| hypothetical protein HMPREF9542_03232 [Escherichia coli MS 117-3]
          Length = 356

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|310816137|ref|YP_003964101.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
 gi|308754872|gb|ADO42801.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
          Length = 379

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 123/284 (43%), Gaps = 10/284 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L ++ + WV + +   + + S  + + + ++ +   +P +
Sbjct: 1   MGRFDRYLLSQLMTLFGFFSLVLIMVYWVNRAVALFDQLISDGQGMWVFVEFTALSLPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +  V   ++  +EL+++ +TG S   +++ V+   ++  + + I  ++
Sbjct: 61  IKLVLPLSAFVASVYVANRLSGESELVVVQSTGFSPARVMRAVMVFGLIAVVMVQILAHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    A+     T   L    F      + + I    P   LQ +F+ DSR 
Sbjct: 121 LVPLSNQRLNIRQAEVTQTATARILRAGEFMTPIAGVTLYIRSITPEGELQDVFLSDSRA 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFK--SYTLQT--ESAN 234
           +    IY A    I    +A  +++ DG +   S  ++ +S   F   +Y L +   S +
Sbjct: 181 SLADTIYTASRAYIVRTERAPQLVMVDGSIQNLSHQTERMSFTTFSDFAYDLSSILPSVD 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            + + L+ N   L  LL  +     +     +  R+E H RL++
Sbjct: 241 PAALSLR-NATTLQLLLARDEMTLLFGA---DNIRTEIHDRLSE 280


>gi|294678216|ref|YP_003578831.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477036|gb|ADE86424.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/286 (19%), Positives = 121/286 (42%), Gaps = 12/286 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L  +   F    L +V + WV + +   + +    ++  ++L+ +   +P V
Sbjct: 1   MKRLDRYLLSQLMAIFGFFALVLVSVYWVNRAVLLFDKLIGDGQTAWVVLEFTALTLPKV 60

Query: 61  LPMVTPFC-FAMETTNVLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           + +V P   FA     VL ++NR    +EL+++ + G S   L +PV    ++++  +  
Sbjct: 61  ISLVLPVAAFA----AVLYAINRLSGESELVVMQSAGASPWRLARPVAVFGLIVAALMLA 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             + + P  R+ + +  A+    +T  +L E  F      + + I + +    L  IF+ 
Sbjct: 117 LVHELVPASRARLAERQAQVSQDVTARFLTEGSFQTPTAGITVYIREISDLGELLDIFLY 176

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D+R  +   IY A+   I        +++ DG      P    +++ +F  +T     A 
Sbjct: 177 DARGQRAETIYTAEKALIVPSEAGPKLVMFDGTAQTLRPSDGSLALTRFSDFTYDLGGAI 236

Query: 235 SSTIVLKANDQNLSF--LLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            + +  + + + +    L+ P P         +     E + RL Q
Sbjct: 237 GTGLRGRIDWEEVPSRDLIAPGPELLAATGSTVAAAHLELNDRLAQ 282


>gi|291514071|emb|CBK63281.1| Predicted permeases [Alistipes shahii WAL 8301]
          Length = 500

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 123/256 (48%), Gaps = 20/256 (7%)

Query: 8   ILRCIGRSFLMSCL---FIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPM 63
           I R + +S+L   +   FIV    ++ I+ R I+ +     S  I++++  Y +  ++PM
Sbjct: 4   IHRLVLKSYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANMIPM 63

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENII- 121
             P    +     + ++  N ELL + + G S + + KP++ L  L+S+   FI  N++ 
Sbjct: 64  GLPLSMLLAAIMTMGNLGENYELLAMKSAGMSLVQITKPLIILVSLVSVGSFFIGNNLVP 123

Query: 122 --EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
               K  ST+  +  + Q AL F   ++ LFF   D++ I++S   P+ + L  + I D+
Sbjct: 124 NANKKLFSTLYDIRQQKQ-ALEF---QDGLFFNGIDNMSIRVSHQEPDTHLLHDVLIYDN 179

Query: 179 RDTQTH-KIYYAQSGSIDL--DRQAIILN--DGEVHRKSPISK--DISIMKFKSYTLQTE 231
           R    +     A SG I L  D++ +++    GE + ++  S+    S ++  ++ LQ +
Sbjct: 180 RAANGNMNTIVADSGYIRLSDDKKYLLVTLFHGETYEQTRNSQWFTKSALRHHTFDLQKQ 239

Query: 232 SANSSTIVLKANDQNL 247
               S   +   D +L
Sbjct: 240 VIPMSGFAMGRTDADL 255


>gi|254418640|ref|ZP_05032364.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
 gi|196184817|gb|EDX79793.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
          Length = 397

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 14/289 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    + +C  +  I  + Q L ++ ++    +S+ +++K++   +P +
Sbjct: 20  MTLIQRYLFRQISLPVVAACASLAGIGILSQSLDQLEVIVERGQSVWVMVKLTLLALPQL 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     LT M R  EL      G +R  +I P   LA L+ I   +    
Sbjct: 80  LAVILPIGLFVGALIALTRMQREQELTAAFAGGMTRWQVISPAARLAFLVLILNLVMTLF 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
            +P  +   +  +   +  L    +EE  F +  D L + + +   N  L+ +F+   D 
Sbjct: 140 AQPWAQREARNQAFAIRTDLAALLVEEGQFVQGPDGLTVYVQQIEQNGLLKNLFVYLDDG 199

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYT--LQTESANS 235
           + TQ      A+ G    +   + + DG   + S  S+ +   + F  Y   L   S  +
Sbjct: 200 KSTQNWSAAEARFGRDAANEPVLTMIDGSWQKYS--SRGVLETLSFDRYDFPLGQFSGVT 257

Query: 236 STIVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLTQWLF 281
             I  K  D  L  LL P+P        R ELL    +E H R+   L+
Sbjct: 258 EQIRYKPADLYLRQLLTPSPRVLETAGSRGELL----AEAHARIAAPLY 302


>gi|222034703|emb|CAP77445.1| hypothetical protein LF82_488 [Escherichia coli LF82]
 gi|312947541|gb|ADR28368.1| hypothetical protein NRG857_14790 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 356

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|320195130|gb|EFW69759.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 356

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 120/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P         +L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVMLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L+ +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLEHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|254437787|ref|ZP_05051281.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
 gi|198253233|gb|EDY77547.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
          Length = 379

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/189 (21%), Positives = 87/189 (46%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V I W+ + ++  + + +  +S  + L+++   +P+V
Sbjct: 1   MARFDRYMLSQLLVLFGFFSLILVVIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    +    V   M+ ++EL ++  TG S   L +P+++  ++++  + +  +I
Sbjct: 61  IRIVLPLSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPIIYFGLIVAALMSVLTHI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    ++    +T   L    F    DD+   I +  P+  +  IFI +S D
Sbjct: 121 LVPLSTEQLTSRQSEISQTMTARLLTPGEFLTPSDDVTFYIRELTPSGEMLDIFISESTD 180

Query: 181 TQTHKIYYA 189
                 Y A
Sbjct: 181 PTRRTTYTA 189


>gi|42523904|ref|NP_969284.1| YjgP/YjgQ permease [Bdellovibrio bacteriovorus HD100]
 gi|39576111|emb|CAE80277.1| predicted permease YjgP/YjgQ family [Bdellovibrio bacteriovorus
           HD100]
          Length = 367

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 124/284 (43%), Gaps = 12/284 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
           SF++  L  V I  + Q+L+          ++  + +I GY+I ++LP++ P        
Sbjct: 20  SFILGLLVFVSIILMFQVLRLTEFALVHGVAMKTIAEIIGYVIISMLPILFPMALLFSVL 79

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
                +++++E++ +  +G    TL+ P L LA L+ +        I P      + L +
Sbjct: 80  LTYGRLSQDSEIVAMKASGLPMGTLLLPALILATLVGVISAQMSFNIAPWGNRQFEVLYS 139

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGS 193
           +       + ++E  F     D+ I  ++ N +   L+ +FI D ++        A++G 
Sbjct: 140 RLANTKAAAIIKEGTFAEGFFDMVIYANEVNTDKGLLKKVFIYDEKNGDVPLTIIAKAGE 199

Query: 194 I--DLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSSTIVLKANDQN 246
           I  D  R      + LN GE+HR++     IS   F +Y ++ +E  N            
Sbjct: 200 IVPDPTRPGHEILLQLNQGEIHRQAKTHTKIS---FDTYDVRFSEPQNIEEKAKSPPSLT 256

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           L  + N    +   + E+  T +SE+HKR    +  ++F +I +
Sbjct: 257 LEEVRNRLKEDIKDK-EVRRTLQSEYHKRWAISVLCIVFAMIGV 299


>gi|34581065|ref|ZP_00142545.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262450|gb|EAA25954.1| unknown [Rickettsia sibirica 246]
          Length = 338

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 4   IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQ 62

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           L+I+  +G + + L  P L++A+++ +  + IS NI+ P     +K      +     S 
Sbjct: 63  LIILQTSGVNNVQLALPALYVALIVMLLAYYISSNIL-PLSHINLKSRLNFIKNNYISSM 121

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII- 202
           +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  
Sbjct: 122 IEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFE 181

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           LN G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 182 LNKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 212


>gi|83953614|ref|ZP_00962335.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841559|gb|EAP80728.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 376

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 99/238 (41%), Gaps = 2/238 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                IY A    +  + D   +I+ DG   R     K +S  KF+ ++    S  SS
Sbjct: 181 PDESVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISSLVSS 238


>gi|229587242|ref|YP_002845743.1| Putative permease [Rickettsia africae ESF-5]
 gi|228022292|gb|ACP54000.1| Putative permease [Rickettsia africae ESF-5]
          Length = 369

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 35  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQ 93

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           L+I+  +G + + L  P L++A+++ +  + IS NI+ P     +K      +     S 
Sbjct: 94  LIILQTSGVNNVQLALPALYVALIVMLLAYYISSNIL-PLSHINLKSRLNFIKNNYISSM 152

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII- 202
           +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  
Sbjct: 153 IEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFE 212

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           LN G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 213 LNKG-IRQEYDVNGNLTQLTFDSLIIKLQNDN 243


>gi|157829182|ref|YP_001495424.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801663|gb|ABV76916.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 338

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 4   IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQ 62

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     S +
Sbjct: 63  LIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYISSMI 122

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII-L 203
           EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  L
Sbjct: 123 EEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFEL 182

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           N G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 183 NKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 212


>gi|165933910|ref|YP_001650699.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
 gi|165908997|gb|ABY73293.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
          Length = 369

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 35  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQ 93

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     S +
Sbjct: 94  LIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYISSMI 153

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII-L 203
           EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  L
Sbjct: 154 EEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFEL 213

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           N G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 214 NKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 243


>gi|51246435|ref|YP_066319.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
 gi|50877472|emb|CAG37312.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
          Length = 351

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 120/294 (40%), Gaps = 17/294 (5%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L IL   S    P +     P    +  T   + ++ + ELL +   G S   ++ PV  
Sbjct: 4   LQILSAYSPTSFPNIFLYTLPMASMLGITICFSRLSTDMELLALKAGGISIYKILPPVFL 63

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
           +A  +++  F     + P     +K+LS +         ++ + F     D+ I + K +
Sbjct: 64  VASAITLIAFYFSTQLIPASELAMKKLSYQILKEKIDQGIQAHKFTDAMGDIVIYVDKVD 123

Query: 166 PN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI 220
                   +++ D R  +   I  A+SGS+  + +     I L DG +HR  P  +   I
Sbjct: 124 KETGDWHNVWVSDMRGVKQPTITMARSGSMKSNSKQMSITIKLTDGSLHR--PEEQGTEI 181

Query: 221 MKFKSYTLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           + FK YT+    E+   +  +L     ++  LL       N   +    Y  EFHKRL  
Sbjct: 182 ITFKDYTINMPLETGGKNIFMLHKRLLSMPELLEQAKRWGNESKKRGRIYLIEFHKRL-- 239

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
            + P+   ++S +A       R  KK     I + +  G+F  + YI+H + + 
Sbjct: 240 -ILPIGCLMLSFLALPLGLQARPGKKA----IGIPVGLGIFIVY-YILHTVGKE 287


>gi|15893268|ref|NP_360982.1| hypothetical protein RC1345 [Rickettsia conorii str. Malish 7]
 gi|15620488|gb|AAL03883.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 378

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 44  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKVERQ 102

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           L+I+  +G + + L  P L++A+++ +  + IS NI+ P     +K      +     S 
Sbjct: 103 LIILQASGVNNVQLALPALYVALIVMLLAYYISSNIL-PLSHINLKSRLNFIKNNYISSM 161

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII- 202
           +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  
Sbjct: 162 IEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFE 221

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           LN G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 222 LNKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 252


>gi|293416425|ref|ZP_06659064.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
 gi|291431781|gb|EFF04764.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
          Length = 356

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|291284363|ref|YP_003501181.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|301017325|ref|ZP_07182089.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|331654591|ref|ZP_08355591.1| putative permease [Escherichia coli M718]
 gi|331664594|ref|ZP_08365500.1| putative permease [Escherichia coli TA143]
 gi|290764236|gb|ADD58197.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|300400298|gb|EFJ83836.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|320656364|gb|EFX24271.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661735|gb|EFX29143.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666886|gb|EFX33862.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
 gi|331047973|gb|EGI20050.1| putative permease [Escherichia coli M718]
 gi|331058525|gb|EGI30506.1| putative permease [Escherichia coli TA143]
          Length = 356

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|297569343|ref|YP_003690687.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925258|gb|ADH86068.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 398

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/264 (20%), Positives = 101/264 (38%), Gaps = 20/264 (7%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           I+F+  +I +L  I  +      L    +I  Y+ P +L    P    M      T MN 
Sbjct: 30  ILFLGRLIPLLDEIFALGLG---LGDFARICLYMSPRLLLFSLPMACMMGVIIAFTRMNG 86

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
           + E++ +  +G     ++ PVL L  + ++   ++  ++ PK      QL          
Sbjct: 87  DYEIMALKASGIGLYRMLPPVLLLGAVTALLTLVTATVLIPKSTIATNQLFWHLAKTKVE 146

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD----R 198
             +  N F      + + + +  P+N  +G+++ D RD        A  G +  D    R
Sbjct: 147 QGVRPNTFSEGLPQVVLYVEEVTPDNAWRGVYLSDLRDPDHPVTVMAPDGQLQADTAGSR 206

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS------FLLN 252
             + L+DG +HR   + +    + F  Y L+      +    +     ++          
Sbjct: 207 IMLTLHDGTMHRA--VQEKTQTIHFGRYHLEIPLTPPAAFADRTGRHGMTQDELRQTAAK 264

Query: 253 PNPNNPNYRPELLETYRSEFHKRL 276
             P +  Y+     TY  E+H+RL
Sbjct: 265 LGPEHSRYK-----TYLIEYHQRL 283


>gi|331648771|ref|ZP_08349859.1| putative permease [Escherichia coli M605]
 gi|330909041|gb|EGH37555.1| permease Ygh-P1, YjgP/YjgQ family [Escherichia coli AA86]
 gi|331042518|gb|EGI14660.1| putative permease [Escherichia coli M605]
          Length = 356

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|157162460|ref|YP_001459778.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|157068140|gb|ABV07395.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
          Length = 356

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTKDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|323188590|gb|EFZ73875.1| hypothetical protein ECRN5871_3009 [Escherichia coli RN587/1]
 gi|324005417|gb|EGB74636.1| hypothetical protein HMPREF9532_04927 [Escherichia coli MS 57-2]
          Length = 356

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|300931864|ref|ZP_07147161.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300460287|gb|EFK23780.1| conserved hypothetical protein [Escherichia coli MS 187-1]
          Length = 353

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 116/283 (40%), Gaps = 24/283 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEF---HKRLTQW 279
            +    NL   L+ +PN       + E  RS F   H  L QW
Sbjct: 226 YR----NLQLPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 263


>gi|218701755|ref|YP_002409384.1| hypothetical protein ECIAI39_3475 [Escherichia coli IAI39]
 gi|227887687|ref|ZP_04005492.1| inner membrane protein [Escherichia coli 83972]
 gi|301019930|ref|ZP_07184065.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371741|emb|CAR19592.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835083|gb|EEJ45549.1| inner membrane protein [Escherichia coli 83972]
 gi|299882028|gb|EFI90239.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555075|gb|ADN47850.1| putative permease [Escherichia coli ABU 83972]
          Length = 356

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G +   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGNPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|300973446|ref|ZP_07172202.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|300410788|gb|EFJ94326.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291260|gb|EFU50620.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 356

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|300905893|ref|ZP_07123626.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|301304161|ref|ZP_07210277.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|307310385|ref|ZP_07590033.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|300402362|gb|EFJ85900.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|300840574|gb|EFK68334.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|306909280|gb|EFN39775.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062299|gb|ADT76626.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315256879|gb|EFU36847.1| putative permease [Escherichia coli MS 85-1]
 gi|323377116|gb|ADX49384.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 356

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLVQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|254453241|ref|ZP_05066678.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
 gi|198267647|gb|EDY91917.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
          Length = 372

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 120/279 (43%), Gaps = 8/279 (2%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V I W+ + ++  + + +  +S  + L+++   +P+++ +V P    +    V   
Sbjct: 13  SLILVLIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSLIRIVLPLSAFVAAVYVTNR 72

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M+ ++EL ++  TG S   L +PV+   +++++ + I  NI+ P   ST + ++ +A++A
Sbjct: 73  MSSDSELTVVQATGYSPFRLARPVIVFGVIVAVLMSILTNILVPL--STERLITRQAEIA 130

Query: 140 --LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
             +T   L    F    DD+   I +  P   +  IFI +S        Y A    +   
Sbjct: 131 QTMTARLLTPGEFLTPTDDVTFYIRELPPGGEMLDIFISESTSPTQRTTYTASRAYLVRT 190

Query: 198 RQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS--FLLNP 253
                +++ DG     +  +  +   +F+ +     +  +   V K +   LS   LL P
Sbjct: 191 ENGPQLVMVDGLTQTLNLETSRLLTTRFEDFVYNVSALMNDDPVRKTSVNGLSTMALLRP 250

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +        +  +  +   H R+ Q     + GL+   A
Sbjct: 251 SAETIADTNQTGDQLKLRGHDRIAQAALGFVAGLVGFSA 289


>gi|193062108|ref|ZP_03043204.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|192932328|gb|EDV84926.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
          Length = 356

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|91212394|ref|YP_542380.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|117625286|ref|YP_854458.1| putative permease [Escherichia coli APEC O1]
 gi|218560055|ref|YP_002392968.1| hypothetical protein ECS88_3362 [Escherichia coli S88]
 gi|218691271|ref|YP_002399483.1| hypothetical protein ECED1_3630 [Escherichia coli ED1a]
 gi|237706273|ref|ZP_04536754.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073968|gb|ABE08849.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|115514410|gb|ABJ02485.1| putative permease [Escherichia coli APEC O1]
 gi|218366824|emb|CAR04594.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|218428835|emb|CAR09636.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
 gi|226899313|gb|EEH85572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294492595|gb|ADE91351.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625416|gb|ADN69720.1| hypothetical protein UM146_01455 [Escherichia coli UM146]
 gi|315288787|gb|EFU48185.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951497|gb|EGB47372.1| permease YjgP/YjgQ family protein [Escherichia coli H252]
 gi|323957869|gb|EGB53583.1| permease YjgP/YjgQ family protein [Escherichia coli H263]
          Length = 356

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|329114705|ref|ZP_08243463.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
 gi|326695971|gb|EGE47654.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
          Length = 411

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 154/346 (44%), Gaps = 44/346 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
           + + Y++  +   FL++ L +V IA +++ +L   NL+++    + I + +   L+P  L
Sbjct: 34  TLDRYLIAQVMPPFLVA-LSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYL 92

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +    V+  M++N E+  I+++G S + + +P + L ++L I  F+    I
Sbjct: 93  GLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGILSFLLYGFI 152

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +     A        L+  +F      L I   K + + + L+ +FI D  +
Sbjct: 153 QPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSE 212

Query: 181 TQTHKIYYAQSG-----------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
            Q   I  A++G            IDL    I+ + G+     P     S++ F   T  
Sbjct: 213 QQERDI-TARNGHIRIGLDGETVEIDLTHGVIVTDKGD---GVP-----SLVTFDHSTRY 263

Query: 230 -TESANSSTIVLKANDQN-------LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            T +++ S    +  D+        +  L+  +P+    RP +    RSE H R+ + L 
Sbjct: 264 LTHASHVSPFRTRGEDERELTSPELVGRLIRHDPS--ISRPHM----RSEVHFRMARSL- 316

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
                 I ++AA   AL+R+R++ +     L ++F +  GF +II 
Sbjct: 317 --TVPFIPLLAASL-ALMRKRQRNN---AGLPLAFIIMVGFDHIIQ 356


>gi|326405101|ref|YP_004285183.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
 gi|325051963|dbj|BAJ82301.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
          Length = 374

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 2/220 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ + ++ P
Sbjct: 13  YVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFVAVILP 72

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +    V   +  + EL ++  +G S   + +P L LA+L  +  +     + P   
Sbjct: 73  ITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWLVPSTL 132

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R       
Sbjct: 133 ARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQKGEPAT 192

Query: 187 YYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             A+SG +    D   ++L DG   +  P +  ++I+ F+
Sbjct: 193 ILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFR 232


>gi|83942394|ref|ZP_00954855.1| membrane protein, putative [Sulfitobacter sp. EE-36]
 gi|83846487|gb|EAP84363.1| membrane protein, putative [Sulfitobacter sp. EE-36]
          Length = 376

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 99/238 (41%), Gaps = 2/238 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                IY A    +  + D   +I+ DG   R     K +S  KF+ ++    +  SS
Sbjct: 181 PDEGVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISALVSS 238


>gi|188494208|ref|ZP_03001478.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|188489407|gb|EDU64510.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
          Length = 356

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|148261611|ref|YP_001235738.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|146403292|gb|ABQ31819.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
          Length = 386

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 2/220 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ + ++ P
Sbjct: 25  YVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFVAVILP 84

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +    V   +  + EL ++  +G S   + +P L LA+L  +  +     + P   
Sbjct: 85  ITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWLVPSTL 144

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R       
Sbjct: 145 ARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQKGEPAT 204

Query: 187 YYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             A+SG +    D   ++L DG   +  P +  ++I+ F+
Sbjct: 205 ILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFR 244


>gi|26249548|ref|NP_755588.1| hypothetical protein c3717 [Escherichia coli CFT073]
 gi|170018761|ref|YP_001723715.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|254162934|ref|YP_003046042.1| hypothetical protein ECB_02856 [Escherichia coli B str. REL606]
 gi|300916913|ref|ZP_07133616.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923637|ref|ZP_07139665.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300950816|ref|ZP_07164702.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958361|ref|ZP_07170502.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|301643654|ref|ZP_07243695.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|307139670|ref|ZP_07499026.1| hypothetical protein EcolH7_16283 [Escherichia coli H736]
 gi|312972759|ref|ZP_07786932.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643681|ref|ZP_08344812.1| putative permease [Escherichia coli H736]
 gi|26109956|gb|AAN82161.1|AE016766_249 Hypothetical protein c3717 [Escherichia coli CFT073]
 gi|169753689|gb|ACA76388.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378536|emb|CAQ33322.1| ybl136 [Escherichia coli BL21(DE3)]
 gi|253974835|gb|ACT40506.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978990|gb|ACT44660.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|284923007|emb|CBG36099.1| putative permease [Escherichia coli 042]
 gi|300314945|gb|EFJ64729.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|300415883|gb|EFJ99193.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420078|gb|EFK03389.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300449911|gb|EFK13531.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|301078038|gb|EFK92844.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|309703416|emb|CBJ02755.1| putative permease [Escherichia coli ETEC H10407]
 gi|310332701|gb|EFP99914.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936015|gb|EGB32310.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941918|gb|EGB38097.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|331037152|gb|EGI09376.1| putative permease [Escherichia coli H736]
 gi|332344939|gb|AEE58273.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 356

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y +  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLIDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|238651117|ref|YP_002916975.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
 gi|238625215|gb|ACR47921.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
          Length = 369

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 35  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVITVITVIYIYNNLKVERQ 93

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           L+I+  +G + + L  P L++A+++ +  + IS NI+ P     +K      +     S 
Sbjct: 94  LIILQASGVNNVQLALPALYVALIVMLLAYYISSNIL-PLSHINLKSRLNFIKNNYISSM 152

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII- 202
           +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  
Sbjct: 153 IEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFASSGTLNIYDNSPIFE 212

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           LN G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 213 LNKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 243


>gi|157826358|ref|YP_001494078.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
 gi|157800316|gb|ABV75570.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
          Length = 360

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 104/211 (49%), Gaps = 4/211 (1%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 26  IVWITQILKLLYLFDKGIKVMD-FFNLIVLVLPTLLFILLPVITVIAIIYIYNNLKVERQ 84

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     S +
Sbjct: 85  LIILQASGVNNVQLALPALYVALIVMLLAYYISSTIMPLSHINLKSHLNFIKNNYISSMI 144

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII-L 203
           EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  L
Sbjct: 145 EEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNNPIFEL 204

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           N G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 205 NKG-LRQEYDVNGNLTQLTFDSLMIKLQNDN 234


>gi|197105168|ref|YP_002130545.1| hypothetical protein PHZ_c1705 [Phenylobacterium zucineum HLK1]
 gi|196478588|gb|ACG78116.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 378

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/296 (19%), Positives = 128/296 (43%), Gaps = 6/296 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +    +++ L +  +A + Q L  ++L+ +  +S  + LK++   +P +
Sbjct: 1   MRLIDRYLLRQLLGPVILATLALTGVALLSQTLSGLDLIVNQRQSALVFLKVTLLAMPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    +     L  ++   E+++    G SR  +I P + LA  ++    +    
Sbjct: 61  INMVLPIAVFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAIRLACTVAFLALLMNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++   + +  L  + + E  F      L +     +    L+ +FI   RD
Sbjct: 121 VQPAAYREMRRELFQVRTDLASTLVREGEFTEPAPGLTVYAQGVDGAGNLENLFIHQMRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +   Y A+ G +     R  +++ +G     S  +  ++ + F  Y     +  SS  
Sbjct: 181 DGSATTYTAEQGRVGRSQGRPVLVMRNGSNQEFSS-TGVLNYLTFDEYIFDLSALTSSDE 239

Query: 239 VL--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           ++  K +D+    L  P+      R   L+   +E H R++  L+ + F  +++ A
Sbjct: 240 LVHYKPSDRYPHELFFPDLQQDWERRNRLDLL-AEGHARISSPLYNIAFMAMALSA 294


>gi|157156628|ref|YP_001464444.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|256019096|ref|ZP_05432961.1| hypothetical protein ShiD9_09279 [Shigella sp. D9]
 gi|332280199|ref|ZP_08392612.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|157078658|gb|ABV18366.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|332102551|gb|EGJ05897.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 356

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   L P   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLKPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|329890121|ref|ZP_08268464.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
 gi|328845422|gb|EGF94986.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
          Length = 342

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 112/250 (44%), Gaps = 15/250 (6%)

Query: 36  INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           + ++    +S+ +++K++   +P ++ ++ P    +     LT + R  EL      G S
Sbjct: 1   MEVIVERGQSVWVMVKLTLLALPQLIAVILPIGLFVGALIALTRLQREQELTAAYAAGVS 60

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
           R  LI+P L +A+++++   +    ++P  +   ++ +   +  L    +EE  F +  D
Sbjct: 61  RWALIRPALQIALIVTVISLLVNVFVQPWAQREGRRQAFAIRTDLAALLVEEGRFVQGPD 120

Query: 156 DLYIKISKYNPNNTLQGIFIV--DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP 213
            L + + +   N  ++ +F+   + +   T     A+ G +D     + + +G + R S 
Sbjct: 121 GLTVYVQQIEQNGLMKNLFVYLDNGKTVTTWDAETARFGRVD-GLPVLTMQNGSMQRYS- 178

Query: 214 ISKDI-SIMKF--KSYTLQTESANSSTIVLKANDQNLSFLLNPNP---NNPNYRPELLET 267
            S+++ + + F  + + L   +  S  I  K +D  L+ L +P P        R EL   
Sbjct: 179 -SREVLNQLSFDQQVFDLSPYAKTSERIRFKPSDLWLTDLFDPTPALLETAGTRGELA-- 235

Query: 268 YRSEFHKRLT 277
             +E H RL 
Sbjct: 236 --AEGHSRLA 243


>gi|260845740|ref|YP_003223518.1| hypothetical protein ECO103_3664 [Escherichia coli O103:H2 str.
           12009]
 gi|257760887|dbj|BAI32384.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 356

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALYVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|293412358|ref|ZP_06655081.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469129|gb|EFF11620.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 356

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    +L   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----HLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|157965014|ref|YP_001499838.1| putative permease [Rickettsia massiliae MTU5]
 gi|157844790|gb|ABV85291.1| Putative permease [Rickettsia massiliae MTU5]
          Length = 370

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 102/211 (48%), Gaps = 4/211 (1%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 36  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVITVITVIYIYNNLKVERQ 94

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G   + L  P L++A+++ +  +   + I P     +K      +     S +
Sbjct: 95  LIILQASGVDNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYISSMI 154

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII-L 203
           EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  L
Sbjct: 155 EEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPIFEL 214

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           N G   ++  ++ +++ + F S  ++ ++ N
Sbjct: 215 NKGR-RQEYDVNGNLTQLTFDSLMIKLQNDN 244


>gi|213963082|ref|ZP_03391340.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
 gi|213954166|gb|EEB65490.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
          Length = 508

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 134/301 (44%), Gaps = 33/301 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+    ++FL +   ++ I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKIIDRYIITQFLKNFLGALSILILIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           +P++ P    + +     S   + E   +  +G S + +++P++ L  LLSI   F++ N
Sbjct: 61  IPIIMPLAVVIASIMTFGSFAESYEFAAMKASGISLMRVMRPLIILMALLSIGTFFLANN 120

Query: 120 IIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFI 175
           +I    R   T++   AK + A+  +   E +F  + +D+ IK+ K + +N   L+ + I
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIA---EGVFSNIGEDISIKVGKKSGDNDQFLESVLI 177

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQ-----AIILNDG-----------EVHRKSPISKDI 218
              + D     +  A+ G +   +       +IL DG           E  +K P +K  
Sbjct: 178 HKKTPDRVNRTVINAKRGELKSAKSNPNFLQLILEDGTYYEDIKTNTYETQQKMPFAK-- 235

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             + FK Y +  + ++ + +         ++ +  N N  +Y    +++ RS+F + +T 
Sbjct: 236 --VHFKKYVINLDLSHLNNVDFNEKSDATTYRMM-NVNQLDYA---IDSLRSDFKQNITD 289

Query: 279 W 279
           +
Sbjct: 290 Y 290


>gi|94495766|ref|ZP_01302346.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425154|gb|EAT10175.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 402

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 120/284 (42%), Gaps = 12/284 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L +  P
Sbjct: 8   YLARLIAVPMLGTLVIAAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMLPEYLSLGIP 67

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        +  ++EL ++   G S   L++     AI L++  F     ++P  R
Sbjct: 68  IGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALINFGIVGFVQPLSR 127

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFI-VDSRDTQTH 184
              + L  + +     + ++   F  L   + ++I +  +    LQGIF+   SRD Q+ 
Sbjct: 128 HAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSRDQGRNLQGIFVRATSRDGQSV 187

Query: 185 KIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            +  AQ   +  D   +I   L DG +   +P  K   I+ F S+ L  +     +   +
Sbjct: 188 AVTAAQGTFLATDDPDVIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIESFRGR 247

Query: 242 ANDQNLSF----LLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            ND+  +     ++  N   P   P+L    R+ FH R+ + +F
Sbjct: 248 DNDREKTIPELVVIGKNQATP---PKLRNEVRANFHFRMVEVVF 288


>gi|126739399|ref|ZP_01755092.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
 gi|126719499|gb|EBA16208.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
          Length = 376

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/301 (19%), Positives = 121/301 (40%), Gaps = 14/301 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + WV + +   + +    +S  + ++ +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWVNRAVVLFDRLIGDGQSALVFVEFTALTLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +   +EL ++  TGTS   + +P L   ++ ++ +    ++
Sbjct: 61  IRMVLPVAVFASSVWVTNRLQSESELTVLRATGTSPWQMARPALVFGLVAALMMSALTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S ++    +    +T   L E  F      +   I K   + TL+ +F+ D RD
Sbjct: 121 LLPASISQLEIREREVSRNVTARLLTEGNFLHPAKGITFYIRKIESDGTLKDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +   Y      +  D ++  +I+ +G   R +  ++ +S   F  +     S + S +
Sbjct: 181 PNSSVTYTGSEAFLVRDGEKTHLIMVNGMAQRFTKDTRRLSTTNFSDF-----SYDISAL 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLET-------YRSEFHKRLTQWLFPVIFGLISIV 291
             K+ D++ +    P+      R ++  T          E H R  + L  V   LI   
Sbjct: 236 ARKSADRSRNIRAIPSLEILTAREQITNTDGYSAGALAEELHLRFARALVCVTVALIGFS 295

Query: 292 A 292
           A
Sbjct: 296 A 296


>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
 gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 11/238 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+LR +   F +S     F+  + +I++  +LV S    L+++ ++  Y +P       P
Sbjct: 10  YLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVSRGVGLDVVGRLLLYTLPYFFVFTIP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI----LLSIFLFISENIIE 122
               +        M+ + E++ +   G S    + PV  LAI    + S   F       
Sbjct: 70  MATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAVLAICAWLVTSALAFWGLPWGN 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
            +  + + Q+ AKAQ  L    L+E +F      + I IS+      +  +FIVD R+  
Sbjct: 130 HRFENLVFQV-AKAQTDLA---LKERVFMDTFPGMVIYISRLPGQGQMTDLFIVDEREKG 185

Query: 183 THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            H    A+ G I   + DR  + L DG +H      +      F +Y +  +++  S 
Sbjct: 186 RHHTIVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQTAAFVTYDIAVDASTLSA 243


>gi|262341091|ref|YP_003283946.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272428|gb|ACY40336.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 381

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 1   MKSFELYILRCIGRSFLM--SCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLI 57
           +K  +LY++R     F +  S +F VF   +IQ    +I+ ++    ++ I++K   Y  
Sbjct: 4   IKKLDLYMIRLFITPFFIIFSTIFAVF---MIQFFWSQIDELTGKNINILIIIKFVFYFG 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
            +++P+VTP    + +      ++ N EL+ I ++G S   ++KP+L +  +LSI L+  
Sbjct: 61  ISIIPLVTPISLLLTSIITFGHLSENQELIAIKSSGISLFRVMKPILGITCILSIGLYFF 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            ++  PK     K+L  K         L+E +F  L  D +IKI +   N  L  IFI
Sbjct: 121 SDLAIPKAIKQAKKLGYKISSTHPSFKLKEGIFVNLLPDFFIKIDR-KKNQQLHNIFI 177


>gi|301048205|ref|ZP_07195241.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299963|gb|EFJ56348.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 356

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++F        + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFFFARYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
 gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
          Length = 364

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 91/210 (43%), Gaps = 2/210 (0%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L +V + WV + +   + +  + +S  + L+ +   +P ++ MV P         V   
Sbjct: 12  ALILVAVFWVNRAVVLFDTLIGNGQSALVFLEFTALTLPNLIRMVLPIAAFGAAVWVTNR 71

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +N  +EL ++  TGTS   + +P L   I+ ++ +    + + P   + +++  ++    
Sbjct: 72  LNSESELTVLRATGTSPWQMARPALAFGIITALMMSALTHYLLPASINQLEERESEVSRN 131

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
           +T   L E  F    + +   I + +P+ TL  +F+ D RD      Y      +  D  
Sbjct: 132 ITAKLLSEGDFLHPAEGVTFYIRQIDPDGTLNDVFLSDRRDPAVTVTYTGTRAFLVRDEG 191

Query: 200 A--IILNDGEVHRKSPISKDISIMKFKSYT 227
           +  +I+ +G   R    ++ +S   F  ++
Sbjct: 192 SAHLIMVEGMAQRLDNETQRMSTTFFSDFS 221


>gi|331659262|ref|ZP_08360204.1| putative permease [Escherichia coli TA206]
 gi|315297643|gb|EFU56920.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053844|gb|EGI25873.1| putative permease [Escherichia coli TA206]
          Length = 356

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 5/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQS-GSIDL--DRQAIILNDGEVH 209
             +T +I+ A+S   +DL  ++  ++L++G  +
Sbjct: 181 ANRT-RIFRARSVDVVDLSPEKPTVMLHNGTAY 212


>gi|258542689|ref|YP_003188122.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633767|dbj|BAH99742.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636826|dbj|BAI02795.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639879|dbj|BAI05841.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642935|dbj|BAI08890.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645990|dbj|BAI11938.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256649043|dbj|BAI14984.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256652030|dbj|BAI17964.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655087|dbj|BAI21014.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 399

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 152/346 (43%), Gaps = 44/346 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVL 61
           + + Y++  +   FL++ L +V IA +++ +L   NL+++    + I + +   L+P  L
Sbjct: 22  TLDRYLIAQVMPPFLVA-LSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYL 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +    V+  M++N E+  I+++G S + + +P + L ++L +  F+    I
Sbjct: 81  GLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGVLSFLLYGFI 140

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +     A        L+  +F      L I   K + + + L+ +FI D  +
Sbjct: 141 QPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSE 200

Query: 181 TQTHKIYYAQSG-----------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
            Q   I  A++G            IDL    I+ + G+     P     S++ F   T  
Sbjct: 201 QQERDI-TARNGHIRIGSDGETVEIDLTNGVIVTDKGD---GVP-----SLVTFDHSTRY 251

Query: 230 -TESANSSTIVLKANDQN-------LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            T +++ S    +  D+        +  L+  +P+    RP +    RSE H R+ + L 
Sbjct: 252 LTHASHISPFRTRGEDERELTSPELVGRLIRHDPS--ISRPHM----RSEVHFRMARSLT 305

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
                L+    A   AL+R+R++ +     L ++F +  GF +II 
Sbjct: 306 VPFMPLL----AASLALMRKRQRNN---AGLPLAFIIMVGFDHIIQ 344


>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
          Length = 442

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 6/216 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F ++ + + F+    +I+  +NL+         + ++ G  +P +
Sbjct: 1   MKILKRYLLKEHIAPFFIALMVVTFVLLSDRIIDLMNLIIEKKLPWQTVFEVFGLSLPYM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + T      M+ + E+  I ++G +  +LI P++  A+LL+  +    + 
Sbjct: 61  LALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLLTGLMVYFNHW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     +K L  K       + ++E  F    D  Y   ++   ++ L  + I D   
Sbjct: 121 FLPDTNHKLKNLMLKIAYYKPMTIIKEKEFTNFMD--YTIYARETTDSLLTDVLIYDRSQ 178

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKS 212
           +   +  +A+SG++    + +   IILNDGE+H ++
Sbjct: 179 SHFPRTIFAKSGNVIQKDNGNSLQIILNDGEMHERN 214


>gi|89070356|ref|ZP_01157663.1| Predicted permease [Oceanicola granulosus HTCC2516]
 gi|89044003|gb|EAR50178.1| Predicted permease [Oceanicola granulosus HTCC2516]
          Length = 370

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 82/175 (46%), Gaps = 6/175 (3%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP---FCFAMETTNV 76
            L ++ + WV + +   + + S  +S  + L+ S   +P ++ +V P   F  A+  TN 
Sbjct: 8   SLVLILLYWVNRAVVLFDQLISDGQSALVFLEFSALSLPAIIRIVLPLAAFIAALYVTNK 67

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           LT+    +ELL++ +TG S + L +P     +++++      +++ P   + +     + 
Sbjct: 68  LTT---ESELLVVQSTGFSPVRLARPAFVFGLIVTLLTGALTHVLVPVAAAQLGARQDEI 124

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS 191
              +T  +L    F    D + + +   N    LQ +F+ D+R++    IY A +
Sbjct: 125 ASNITARFLTPGQFLNPVDGITVYVRDINDAGALQDLFLADTRESGRQVIYTAAT 179


>gi|309794091|ref|ZP_07688516.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308122498|gb|EFO59760.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 356

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+      +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLLVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   +PN + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAEL-QW 266


>gi|306816677|ref|ZP_07450809.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
 gi|305850242|gb|EFM50701.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
          Length = 356

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   + N + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSANVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|281180021|dbj|BAI56351.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 356

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   + N + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSANVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|191172497|ref|ZP_03034037.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300993119|ref|ZP_07180205.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|190907165|gb|EDV66764.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300305134|gb|EFJ59654.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|324011925|gb|EGB81144.1| hypothetical protein HMPREF9533_04083 [Escherichia coli MS 60-1]
          Length = 356

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 117/286 (40%), Gaps = 27/286 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T +I+ A+  S+D            V   SP    + +    +Y L  +  + +  +
Sbjct: 181 ANRT-RIFRAR--SVD------------VVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEF---HKRLTQW 279
            +    NL   LNP   + N + +   + E  RS F   H  L QW
Sbjct: 226 YR----NLQLHLNPLDQSANVKRKAKSVTELARSVFPADHAEL-QW 266


>gi|83594275|ref|YP_428027.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577189|gb|ABC23740.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 396

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 136/318 (42%), Gaps = 38/318 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YILR +     +  + ++ + W+I  L+ ++   +   S+   L+++  L+P  L +  P
Sbjct: 9   YILRNLLVGLAVGSVALIVLIWLINSLKFLDWFVNKGLSVATFLRLTLLLMPGFLTVFIP 68

Query: 67  ---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL-AILLSIFLFISENIIE 122
              F   + T N L +   + EL+++   G     L +P L L A+L  +  +++ +++ 
Sbjct: 69  IALFAVVLFTYNRLAA---DRELIVMRAAGMGPWQLARPALALCAVLTGVGYWLTLSVV- 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +  + +  ++   ++E  F ++ D L +   +   +  L  + I D+    
Sbjct: 125 PAMEGAFEAIKYEVRGEVSSLVIKEGQFNQMKDGLIVYAGERAKDGRLIDLMIHDTTGKT 184

Query: 183 THKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--- 237
           +     A+SG++  + +   I+L +G    ++  +  ++ + F SY +      +ST   
Sbjct: 185 SDLTVMAESGALVREGEGARILLINGNRQERNRQTGKVNFLYFDSYAVDLGGKAASTEMR 244

Query: 238 ------------IVLKANDQNLSFLLNPNPNNP-NYRPELLETYRSEFHKRLTQWLFPVI 284
                       I LKA D+        +P+ P  Y    +   R E H RL + L  + 
Sbjct: 245 FREERERPLSELISLKAGDR-------IDPDYPFTYEERHIRRMRMEAHLRLLRPLAHIG 297

Query: 285 FGLISIVAA-----DKRA 297
           F LI + A      D+R 
Sbjct: 298 FLLIGLAAVLTGEFDRRG 315


>gi|256820290|ref|YP_003141569.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581873|gb|ACU93008.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 495

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 33/301 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+   F++ N
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 120 IIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFI 175
           +I    R   T++   AK + A+  +   E +F  + +D+ IK+ K   +N   L+ + I
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIA---EGVFSNIGEDISIKVGKKRGDNDEFLENVLI 177

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQ-----AIILNDG-----------EVHRKSPISKDI 218
              + D     +  A+ G +   +       +IL DG           E  +K P +K  
Sbjct: 178 HKKTPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAK-- 235

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             + FK Y +  + ++ + +         ++ +  N    NY    +++ R++F + +T 
Sbjct: 236 --VYFKKYIINLDLSHLNNVDFNEKTDATTYRM-MNVGQLNYA---IDSLRTDFKQNITD 289

Query: 279 W 279
           +
Sbjct: 290 Y 290


>gi|320353217|ref|YP_004194556.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121719|gb|ADW17265.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
          Length = 508

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 118/292 (40%), Gaps = 26/292 (8%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F  S L +  + ++++++  + +V +    L   +++  Y+ P +L  + P         
Sbjct: 47  FFASFLILYCVFFLVRLIPLLEVVLALRIGLADFIRLFSYIFPRMLLYIIPMASMAGVIV 106

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL-FISENIIEPKCRSTIKQLSA 134
             T +  + E+L +   G S   ++ PV+ +A  ++    F S  +I P      KQL  
Sbjct: 107 GFTRLTNDREILALKACGVSLKQMLPPVILIAAAIATLTGFFSIRLI-PAGALGFKQLMF 165

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +         L+   F     D+ + + + +      G+++ D R      I  A+SG +
Sbjct: 166 ELAKEKIDKGLKAREFTEALGDIVVYVDEIDDQQRWHGVYVSDMRGRTQPLITVAKSGHM 225

Query: 195 DLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQ----------TESANSSTIVL 240
           + + +     I+LNDG +H       D  +++F  Y LQ           E   S T   
Sbjct: 226 EAEMERMTVTIVLNDGTLHNNE--GTDNQVVRFGRYQLQISLRPPTQIGKEDVTSQTRGA 283

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +  Q L       PN+  +R      + SE+H RL     PV   ++SI+ 
Sbjct: 284 MSQQQLLRAAAKQKPNSKLHR-----IFLSEYHHRLA---LPVGCFILSILG 327


>gi|255264665|ref|ZP_05344007.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
 gi|255107000|gb|EET49674.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
          Length = 380

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/171 (19%), Positives = 79/171 (46%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L ++ + WV + +   + + +  +S  + L+ +   +P V+ +V P      +  V   
Sbjct: 26  SLVLIMVYWVNRAVILFDQLIADGQSAGVFLEFTALSLPNVIRLVLPLSAFAASVYVTNR 85

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           ++ ++EL ++  TG S + L +PV+   +L++  + +  +++ P   S +    A+    
Sbjct: 86  LSTDSELTVMQATGHSAVRLARPVIVFGLLVTALMMVLTHVLVPTSLSRLNDREAEIAEN 145

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
           +T   L E  F      +   + + + +  L  IF+ D+R+ +    Y A+
Sbjct: 146 VTARLLTEGTFLNPASGITFYVREISASGELLDIFLTDTRNPKRQITYTAE 196


>gi|298506037|gb|ADI84760.1| membrane protein, YjgP-related [Geobacter sulfurreducens KN400]
          Length = 388

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 26/251 (10%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL-FLAILLSIF 113
           Y++P+   +  P  F +     +  ++ ++E+  +  +G S  T+  PV+ F  I  +  
Sbjct: 56  YMLPSFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAAT 115

Query: 114 LFISENIIEPKCRSTIKQ-----LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-N 167
            F+S   + P   +  K+     +  +A +++T     E +F      L I +  ++P +
Sbjct: 116 TFVSVYAL-PWGNTAFKKFLHGVIETRAAMSIT-----EKVFNDEFPGLVIYVDGFDPKS 169

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKF 223
             + GI I D R+       +A SG +  + +  I    LN+G +HR    +    +++F
Sbjct: 170 GRISGILIHDERNPDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGIG-TGGYRLVEF 228

Query: 224 KSY----TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            SY     LQ E   +    L   D  L  LL     +P  +P+L+     E HKR    
Sbjct: 229 TSYDLSIALQREQQKAR---LNEEDMTLGELLA-RMKSPGEQPKLVREMHFELHKRFALP 284

Query: 280 LFPVIFGLISI 290
              V+F +I++
Sbjct: 285 FACVVFAVIAV 295


>gi|39997020|ref|NP_952971.1| hypothetical protein GSU1922 [Geobacter sulfurreducens PCA]
 gi|39983908|gb|AAR35298.1| membrane protein, putative [Geobacter sulfurreducens PCA]
          Length = 399

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 26/251 (10%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL-FLAILLSIF 113
           Y++P+   +  P  F +     +  ++ ++E+  +  +G S  T+  PV+ F  I  +  
Sbjct: 67  YMLPSFFLVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAAT 126

Query: 114 LFISENIIEPKCRSTIKQ-----LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-N 167
            F+S   + P   +  K+     +  +A +++T     E +F      L I +  ++P +
Sbjct: 127 TFVSVYAL-PWGNTAFKKFLHGVIETRAAMSIT-----EKVFNDEFPGLVIYVDGFDPKS 180

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKF 223
             + GI I D R+       +A SG +  + +  I    LN+G +HR    +    +++F
Sbjct: 181 GRISGILIHDERNPDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGIG-TGGYRLVEF 239

Query: 224 KSY----TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            SY     LQ E   +    L   D  L  LL     +P  +P+L+     E HKR    
Sbjct: 240 TSYDLSIALQREQQKAR---LNEEDMTLGELLA-RMKSPGEQPKLVREMHFELHKRFALP 295

Query: 280 LFPVIFGLISI 290
              V+F +I++
Sbjct: 296 FACVVFAVIAV 306


>gi|110598486|ref|ZP_01386757.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
 gi|110339936|gb|EAT58440.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
          Length = 435

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 91/207 (43%), Gaps = 15/207 (7%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           S +++    PM       M       S+  N+E+ ++  +G S   L+ PVL +A+LLS+
Sbjct: 57  SAWMVGLAAPMAVLIAVVM----AFGSLTTNSEMTVLRASGISLYRLMFPVLCVALLLSL 112

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQ 171
            +    NI+ P      K L      A     L+EN F  L D   I + + +  +  ++
Sbjct: 113 CVERFNNIVLPLANYHAKSLMVDIARAKPAFGLKENAFSTLVDGYSILVREADDQSKEIR 172

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEVHR-KSPISKDISIMKFKSY 226
           G+ I D        +  A+ G+I+   D Q +++   DGE+H+ K P  +    + FK Y
Sbjct: 173 GVVIYDRSRPNFTTMETAERGTIEFSGDFQYLVMTLLDGEIHQVKQPAHQVYRNLSFKKY 232

Query: 227 TLQTES-----ANSSTIVLKANDQNLS 248
               ES     A +S   L+  D  LS
Sbjct: 233 RFVFESSGFGFARTSANRLRTGDSELS 259


>gi|47155054|emb|CAE85253.1| putative permease [Escherichia coli]
          Length = 227

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 2/192 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     +  NN L    I  S 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTST 180

Query: 180 DTQTHKIYYAQS 191
             +T +I+ A+S
Sbjct: 181 ANRT-RIFRARS 191


>gi|315223351|ref|ZP_07865210.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
 gi|314946682|gb|EFS98671.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
          Length = 495

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 33/301 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+   F++ N
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 120 IIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFI 175
           +I    R   T++   AK + A+  +   E +F  + +D+ IK+ K   +N   L+ + I
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIA---EGVFSNIGEDISIKVGKKRGDNDEFLENVLI 177

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQ-----AIILNDG-----------EVHRKSPISKDI 218
              + D     +  A+ G +   +       +IL DG           E  +K P +K  
Sbjct: 178 HKKTPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAK-- 235

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             + FK Y +  + ++ + +         ++ +  N    NY    +++ R++F + +T 
Sbjct: 236 --VYFKKYIINLDLSHLNNVNFNEKTDATTYRM-MNVGQLNYA---IDSLRTDFKQNITD 289

Query: 279 W 279
           +
Sbjct: 290 Y 290


>gi|126736391|ref|ZP_01752133.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
 gi|126714212|gb|EBA11081.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
          Length = 369

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 20/251 (7%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L ++ I W+ + +   + + +  +S  + L+ +   +P+V+ +  P         V   
Sbjct: 13  SLVLILIYWINRAVVLFDQLIADGQSAGVFLEFTALSLPSVMRLALPLAAFAAAVYVTNR 72

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M+  +EL ++  TG S   L +PVL+  I++++ +    + + P   + +    A+    
Sbjct: 73  MSTESELTVVQATGYSPFRLARPVLYFGIIVALMMSALMHFLVPMSAARLADRQAEIAQN 132

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLD 197
           +T   L E  F    + +   I    P   LQ IF+ D+R       Y A    +  D D
Sbjct: 133 ITARLLTEGQFLEPINGVTFYIRDITPAGELQDIFLSDTRSDAEQVTYTATKAFLVRDND 192

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
              +++ DG V                  TL+TE+    T        N+S L+   P N
Sbjct: 193 TIQLVMLDGMVQ-----------------TLRTENQRLFTTTFDDFAYNISDLIR-QPRN 234

Query: 258 PNYRPELLETY 268
              R   L T+
Sbjct: 235 RGRRDAYLFTW 245


>gi|313157781|gb|EFR57192.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
          Length = 500

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 115/242 (47%), Gaps = 14/242 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   ++F+  +  + + I+ +     S  I++++  Y +  +
Sbjct: 1   MKTIHKLVLKAYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           +P+  P    +     + ++  N ELL + + G S I + KP++ L  L+S+   FI  N
Sbjct: 61  IPLGLPLAMLLAAIMTMGNLGENYELLAMKSAGMSLIRITKPLIILVSLISVGSFFIGNN 120

Query: 120 II---EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
           ++     K  S +  +  + Q +L F   ++ LFF   D++ I++S+  P  + L  + I
Sbjct: 121 LVPYANKKVFSILYDIRQQKQ-SLEF---QDGLFFNGIDNMSIRVSRQEPETHLLHDVLI 176

Query: 176 VDSRDTQTH-KIYYAQSGSIDL--DRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQT 230
            D+R          A SG I L  D++ +++   +GE + ++  S+  +  K + +  + 
Sbjct: 177 YDNRAANGDMNTIVADSGYIRLSDDKKYLLVTLFNGETYEQTRSSQWFTQSKLRHHIFEK 236

Query: 231 ES 232
           + 
Sbjct: 237 QD 238


>gi|149915564|ref|ZP_01904090.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
 gi|149810456|gb|EDM70299.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
          Length = 376

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 33/310 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y++R +   F    L ++ I W+ + L+    +    +S  +LL++    +P V
Sbjct: 1   MTKFDQYVIRKLITLFAFFALILIAIFWLDKALRMFERLLGKGQSNWLLLELILLTLPPV 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           +  + P   F  A+  TN L+S     E+ I+  +G S   +I+P+    IL +  +   
Sbjct: 61  VASILPIASFASAVSVTNRLSS---EAEITIMKASGCSTYRIIRPIFIFGILTTSLMAWL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            N I P+    +  L ++    +T S+L E  F      + + I K   +  L+ IF+ D
Sbjct: 118 TNSILPESGKRLSSLRSQVDQNITSSFLTEGEFLHPTPGVTLFIGKVTQDAELRRIFLSD 177

Query: 178 SRDTQ------THKIYYAQSGS------IDLDRQAIILNDGE--VHRKSPISKDISIMKF 223
            RD +        K Y   S +      +D   Q +  ND +  V R    + DIS +  
Sbjct: 178 RRDLRETIIITAEKAYTEHSPTTVQLLMVDGTTQILRENDNKLFVGRFEEYALDISELVE 237

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            +Y+ Q     + T+ L         +  P+    + +  L E    E H R  Q   P+
Sbjct: 238 TTYSTQKTVTQAKTVEL---------IKQPSEVIASTKATLGEV-AFELHNRFAQ---PI 284

Query: 284 IFGLISIVAA 293
           +  + +++ A
Sbjct: 285 LCAIAAVLGA 294


>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 382

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/294 (17%), Positives = 122/294 (41%), Gaps = 6/294 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++  L I+R I   FL+       +  + ++++   +V S   +L  + ++   L+P+ L
Sbjct: 3   RTLYLSIIREITSLFLLGLGIFTLVLLMGRMIKLTEMVISRGVALADMGRMIICLMPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P  F +        ++ ++E+ ++   G S + ++ PVL  A++ +     +  + 
Sbjct: 63  VYTIPMAFLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAGVVG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P        +S         S + E +F+     + +    Y+   +TL G+ I D R+
Sbjct: 123 VPWGNRAFAAMSFDMLSQNVSSTIREKVFWDDIPGIVLYTDHYDEERHTLSGVVINDERN 182

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +          +IL  G +H +     +  ++ F  Y +   +   +
Sbjct: 183 ASRPLTIFASSGLVAGGANPRDVRLILRSGSIHAQGR-GGEYRLIHFAEYVMNIAAPGGT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             V +A  +     L+ +  +P+ +P+L +   +E H R       ++F ++++
Sbjct: 242 DTVTRAPREMTVTELHRSIASPSTQPKLRKKMATEMHSRFALPFASLVFAVLAV 295


>gi|218665831|ref|YP_002426599.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518044|gb|ACK78630.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 373

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 105/235 (44%), Gaps = 14/235 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M    + ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+
Sbjct: 1   MTRIRMQVVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L MV P  F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I    
Sbjct: 61  LVMVLPLAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
             P  +  ++  S +   A   + L+   F  L     I + +    N+   Q IF+  +
Sbjct: 121 WAPGAQRELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVA 180

Query: 179 RDTQT-------HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  Q         ++  AQ G++ L     +L DG+ +   P      ++ F  Y
Sbjct: 181 QGGQLDMATAAYGEVKPAQDGALTL-----VLVDGQRYLGQPGKAGFKVLSFARY 230


>gi|255020899|ref|ZP_05292955.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
 gi|254969690|gb|EET27196.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
          Length = 372

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 6/242 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ILR + R F+  CL ++ I  + Q+ Q ++ V+S    L + L++ G   PT+
Sbjct: 1   MSRIHARILRDLLRVFVFGCLLVLGILAIGQLSQLLSQVASGQLPLGVTLQLLGLATPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F      V +++ R+ E++ I + G S + L++ +    +++++   +    
Sbjct: 61  LVTVLPLAFFFALYLVFSNLYRSNEMMAIRSAGLSLLDLLRALALPILVIALLEALLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDS 178
             P  +  ++  S +   A   + ++   F R+     LY+  S     +  + IF VD 
Sbjct: 121 WSPAAQRQLQAESLRLANAAAEALIQPGSFARIAGGHILYVGQSAPGSEHRYREIF-VDL 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  I  A  G I  D+    A++L  G  +   P +    I+ F  Y +   +   
Sbjct: 180 GGKGEPDIATAAFGEIRKDQDGGIALVLIQGHRYLGQPGTAGFKILSFVHYRIALAAPQG 239

Query: 236 ST 237
           S+
Sbjct: 240 SS 241


>gi|288962055|ref|YP_003452365.1| predicted permease [Azospirillum sp. B510]
 gi|288914335|dbj|BAI75821.1| predicted permease [Azospirillum sp. B510]
          Length = 385

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/350 (19%), Positives = 141/350 (40%), Gaps = 19/350 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +  + L S   +    W+ Q L+ I +V S+   + + L +    +PT 
Sbjct: 1   MNRLQRYLFRNLLIATLYSTAGLTLTIWLSQSLRLIEIVVSAGAPMGMFLWLLLLTVPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P             M  ++EL+++   G    +L  P L LA+ +   + +    
Sbjct: 61  LGVVLPLALVGAILFTYNKMTTDSELVVMRAAGVGPFSLSTPALVLAVAVMAIVLVLNVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     + ++    +   +  +L E +F  + D   + +   + +  L  + I D R 
Sbjct: 121 ITPAAHRELVRMEYAVRSDYSQLFLREGVFNEVGDRFSVFLRDRDSDGNLHKVLIHDGRQ 180

Query: 181 -----TQTHKIYYAQSGSIDLDRQAIILNDG---EVHRKSPISKDISIMKFKSYT--LQT 230
                T        Q+G+   D    ++ DG   E+ RK   +  +S + F+ Y   L+ 
Sbjct: 181 PDKPVTIMGDRALMQTGA---DGTRFVVYDGNRQELDRK---TNRLSQLFFERYAVDLKA 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +  ++     A +++   L++ N   P     +     +E H R +  L  + F L+++
Sbjct: 235 VAPQAADRWPDARERSTEDLMSGNV--PAQDDRMRRGLIAELHHRFSSPLLALTFALVAL 292

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
            A       R R +   + I++ +  G+  G   +     +   ++P++Y
Sbjct: 293 SALLSGEFNR-RGQSSRVTIAVLLVMGLQAGALGLTSLAGKATVFVPLMY 341


>gi|315500012|ref|YP_004088815.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
 gi|315418024|gb|ADU14664.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
          Length = 384

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 130/310 (41%), Gaps = 15/310 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++ E YI R +    L +   +  IA + Q L + +++    +SL+  LKI+   +P +
Sbjct: 1   MRTIEGYISRQMRTPILGAIAALTAIAILSQSLTQFDVIVERGQSLSTFLKITFLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T   L  M+ + E++     G S   +  PV+   + +++   +    
Sbjct: 61  SGLIFPVAIFVGTLVALNRMHNDHEIVAGYANGMSLWRIASPVVRFGVYITLMGLLMTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P     +++   K +  +  + + E  F      + I + + + +  L+ IFI     
Sbjct: 121 IQPAASRAMREELFKIKTDVIAAAVREGDFSTTPSGMTIYVQRIDQSGLLRQIFIRTPGP 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANS 235
               + Y A+ G +       Q +IL DG   + SP    ++ + F  Y+        + 
Sbjct: 181 HGLDRTYLAREGRVITPVKGGQVLILRDGSTQQLSP-EGVLNHLTFAEYSFDISQYVISE 239

Query: 236 STIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +  K +D+    L  PN      N N+   +     +E H R++  L+ + F L++IV
Sbjct: 240 DYLHFKDSDRFPHELFFPNRAMEWENGNWTKLM-----AEGHARISGPLYNLGFCLLAIV 294

Query: 292 AADKRALVRQ 301
                A  RQ
Sbjct: 295 GVLGGAFSRQ 304


>gi|126725340|ref|ZP_01741182.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
 gi|126704544|gb|EBA03635.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
          Length = 367

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/327 (18%), Positives = 138/327 (42%), Gaps = 17/327 (5%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +L+S    +L + L+ +   +P V+ +V P    + +  V   +   +E++++ + G S 
Sbjct: 31  DLISDGHTAL-VFLEFTALALPNVILLVLPVAGFVASIYVANRLISESEMVVMQSAGHSA 89

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
             L+ P L   + + + + I  +I+ P  R+ + +   +    +T  +L    F    +D
Sbjct: 90  KRLMVPALIFGVGIFVMMSILSHILVPISRTALAEREGELSQDVTTQFLNAGRFVHPSND 149

Query: 157 LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPI 214
           L I + +++    L+ I + D R      IY A    +        +++  G+    +  
Sbjct: 150 LTIYVREFSETGELRDILLTDDRSANIQTIYTANRAFLIKTETGPRLVMLSGQTQTLNRT 209

Query: 215 SKDISIMKFK--SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
           +  +S + F   +Y L     +S   VL   +     LL  +  + +        ++++ 
Sbjct: 210 TDRLSFVTFTELTYDLSALIPSSKERVLNMRELFTPALLRGDQADLDRTNSTTAIFKAQA 269

Query: 273 HKRLTQWLFPVIFGLISIVAA-----DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           H R ++ L  +I  L+ +        ++  + RQ      I I + + F    G +  I 
Sbjct: 270 HGRFSKPLLGMILPLLGVAVMLVGGFNRMGVSRQILASAVIIILVQMLFNA--GENAAI- 326

Query: 328 KIEQNPYYIPILYL-FLFCISSIFLLM 353
               NP   P++YL  +F ++ +++L+
Sbjct: 327 ---SNPTMWPMIYLPIVFAVALLWMLL 350


>gi|77919518|ref|YP_357333.1| hypothetical protein Pcar_1922 [Pelobacter carbinolicus DSM 2380]
 gi|77545601|gb|ABA89163.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 418

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/306 (21%), Positives = 123/306 (40%), Gaps = 34/306 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+LR      L+       +  + +IL  + LV +    L  +L +  YL+PT L +  P
Sbjct: 36  YLLRETLVPMLLGLAVFTLVLLLGRILNLVELVINKGVPLVDVLLLLAYLLPTFLVLTLP 95

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +        M+ + E+L +   G     L  P++ L +L+S+    +   I+P   
Sbjct: 96  LSFLLGVMAGFGRMSADREILALKACGVGLRQLTAPIVGLGLLVSLATAATTIAIKPASE 155

Query: 127 STIKQ-----LSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
              ++      S++A + +      +     + +  D D          +  +QG+FI D
Sbjct: 156 DLFREKLFHIASSRANIGIQAQIFNDEFEGIILYANDVD--------ERSGRMQGVFISD 207

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAII----LNDGEVHR-KSPISKDISIMKFKSYTLQTES 232
            RD     I  A  G I  +++ +     L +G +HR +        +++F  Y L  + 
Sbjct: 208 ERDDTLSSIILANEGRIFSNQENLTLTLHLENGTIHRQRRETGSGFQVIEFTRYDLNLDL 267

Query: 233 ANSSTIVLKANDQNLSFLLN-------PNPNN-PNYRPELLETYRSEFHKRLTQWLFPVI 284
             +S    +      +  L        P+    P+ + ELL    +EFH RL   + P++
Sbjct: 268 GQTSMSADQPRKNKKTMTLGELYQAIRPDAATPPSKKRELL----AEFHWRLAVPVIPLL 323

Query: 285 FGLISI 290
           F L+ +
Sbjct: 324 FALLGV 329


>gi|332876989|ref|ZP_08444742.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685097|gb|EGJ57941.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 491

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 99/217 (45%), Gaps = 14/217 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYILTQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIGKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           +P++ P    + +     +   N E   +  +G S + ++ P++ L  LLSI   F++ N
Sbjct: 61  IPIIMPLAVVISSIMTFGAFAENYEFAAMKASGISLMRVMLPLIVLMALLSIGTFFLANN 120

Query: 120 IIEPKCRS--TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFI 175
           +I    R   T++   AK + A+  S   E +F  + +D+ IK++K + +N   L  + I
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIS---EGVFSNIGEDISIKVAKKSGDNDQFLHNVLI 177

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQ-----AIILNDG 206
              + D     + +A+ G +   +       +IL DG
Sbjct: 178 HKKTPDRVNRTVIFAKKGELKTAKTNSNFLQLILEDG 214


>gi|198283963|ref|YP_002220284.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248484|gb|ACH84077.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 368

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 14/230 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
           + ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+L MV 
Sbjct: 1   MQVVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTLLVMVL 60

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I      P  
Sbjct: 61  PLAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGA 120

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRDTQT 183
           +  ++  S +   A   + L+   F  L     I + +    N+   Q IF+  ++  Q 
Sbjct: 121 QRELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVAQGGQL 180

Query: 184 -------HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
                   ++  AQ G++ L     +L DG+ +   P      ++ F  Y
Sbjct: 181 DMATAAYGEVKPAQDGALTL-----VLVDGQRYLGQPGKAGFKVLSFARY 225


>gi|310778171|ref|YP_003966504.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
 gi|309747494|gb|ADO82156.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
          Length = 357

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 4/192 (2%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           FI  I  ++Q+++  N++      L+++  +S YL P +L    P  F +      + + 
Sbjct: 25  FIFLIDIMVQMME--NIIVKGVSLLDVVRILSFYL-PPILSQTIPMGFFLGVMITYSKLT 81

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
             +E   +++ G S  ++IKP   LA+ ++ F+F  +  I P     ++QL+ K      
Sbjct: 82  STSESTAMNSMGMSLNSIIKPTFMLALGITAFVFFLQESIIPNSFVKLQQLTLKIAYEKP 141

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI 201
              L+EN++    DD  I I K   + + + I I       +         ++  D  A+
Sbjct: 142 AFQLKENMYIDEVDDYSIYIDKVGGDGSAENILIFKKEKDNSFPTVLTAKKAMWKD-AAM 200

Query: 202 ILNDGEVHRKSP 213
           IL D E +  +P
Sbjct: 201 ILEDAEFYNLNP 212


>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 369

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 36/259 (13%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F MSCL       ++ ++++I+       S    ++   Y IP  +  + PF   + +  
Sbjct: 23  FSMSCLL-----SIVGLIEKIDDFMPYKPSTTFFIEYGLYSIPRYIFYLIPFVTLVTSLF 77

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRSTIKQ 131
           + +   R+ E LI+  +G     L+KP L L I++SI  FI    ++P    K    I++
Sbjct: 78  IFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFGEFLQPEFTKKLNFMIEE 137

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG---IFI---------VDSR 179
           L+ K +     S +++ LF R  D   IKI K++          IFI         +DS+
Sbjct: 138 LTQKGK-----SSIQKELFVRAKDGTVIKIGKFSQQQKKADEVKIFIIKNDALIKRIDSQ 192

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTESANS 235
           + +  +  +    SI  D  A     G+V +      P++  ISI  FK    + E    
Sbjct: 193 EAEIEQDQWKLKNSIVYDFVA-----GKVEKYDLMDYPLNLKISIAAFKDIK-KIEEFGI 246

Query: 236 STIVLKANDQNLSFLLNPN 254
           + ++ K  +     L NP 
Sbjct: 247 AELIQKRKELKKVGLSNPK 265


>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 381

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 120/297 (40%), Gaps = 12/297 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  F+ Y+L  +   F    L +V + W+ + +   + + +  +  ++ L+ +   +P V
Sbjct: 5   LARFDRYVLSQLFVLFGFFSLVLVSVYWINRAVILFDRLIADGQPASVFLEFTALSLPNV 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +   +EL+++  TG S   L +PV+    ++  F+ +    
Sbjct: 65  IRMVLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTFMMVLTQY 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++    +   +L+   L E  F      +   I +  P   L+ +F+ D R+
Sbjct: 125 LVPSSLEQLRFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPEGVLKDVFLSDRRN 184

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
                 Y +  G +  +     +++  G  H  +  ++ ++  KF   SY++ +   N  
Sbjct: 185 EGRTTTYSSVDGFLVNEPTGPKLVMVSGVTHTLNEDTRKLTKTKFTDFSYSISSLIDNPG 244

Query: 237 TIVLKAND-QNLSFLLNPN---PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           +     N  Q L  LL  +     +      +LE    E H R  Q +  V+  LI 
Sbjct: 245 SFYKSLNQYQTLELLLATDVVQKRSGQSTGRILE----EAHSRFNQPILCVVAALIG 297


>gi|119773933|ref|YP_926673.1| hypothetical protein Sama_0796 [Shewanella amazonensis SB2B]
 gi|119766433|gb|ABL99003.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 369

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 23/296 (7%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++ L ++   ++ Q   R+   +S  E   ++++ + G  +P +  +V P    +     
Sbjct: 16  IAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAVLVLPLSLFLGILMA 75

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
              M    E+++    G S   + +  L LA+L  +F       + P       Q+  KA
Sbjct: 76  HGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVTPWAEERQNQVLEKA 135

Query: 137 QLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIV---DSRDTQTH-KIYYAQS 191
           Q     + L +  F    D   +  + K   +N L+ +F+    D  D      +  A  
Sbjct: 136 QSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPDPDDEHGQINLVSAAG 195

Query: 192 GSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           G +  D    Q + LNDG  ++ SP S D  +++F  Y +Q +         K +   L+
Sbjct: 196 GKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQEVDERRRKMSALPLN 255

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALVRQRK 303
            LL+ N       PE +    +E H R+     P+   L++++A    R  VRQ K
Sbjct: 256 QLLDQN------TPEAV----AELHWRIA---IPLAIPLMTLIAVPMARVNVRQGK 298


>gi|322418227|ref|YP_004197450.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
 gi|320124614|gb|ADW12174.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
          Length = 387

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 119/290 (41%), Gaps = 10/290 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI   I   FL+  +   F+  + + L+   +V         +L++  YL+P+      P
Sbjct: 8   YIFNEIPPPFLVGMVAFTFVLLMGRFLKLAEMVVEKGVPFTDVLRMVSYLLPSFWLFTIP 67

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        ++ ++E+  + + G S   L+ P L  ++L S+          P   
Sbjct: 68  MALLLSILLAFGRLSGDSEVTAMKSCGISLYGLLPPPLVFSLLASLACLWVTVYAVPWGN 127

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHK 185
           S+ K+L  +         ++E +F     D+ I     +     ++G+ + D RD +   
Sbjct: 128 SSFKKLMLEIARNSASVSIKEKVFNNAFPDMVIYADTLDTKAQNMEGVIVHDERDPKAPT 187

Query: 186 IYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST-IVL 240
             +A SG++  D +A      L +G +HR S    +  +++F+ Y L+   A  +     
Sbjct: 188 TIFAASGALFSDPKAHSMEFQLKNGSIHR-SEDGANYRMVQFQEYILRVALAEPTPKGPR 246

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           KA++  +  L++P P     +  L    R E H RL      ++F  + +
Sbjct: 247 KASEMTIDELVHP-PQVAAAKDVL--ARRLELHSRLALPFSCIVFTFVGV 293


>gi|160876367|ref|YP_001555683.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861889|gb|ABX50423.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268557|gb|ADT95410.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 370

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 24/315 (7%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           ++++ + G  +P ++ +V P    +        M    E++I+   G S   + +  L L
Sbjct: 46  SLIMTLIGLNLPYLVILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLIL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYN 165
           A++  +F       + P       Q+  KAQ     + L +  F    +   +  + +  
Sbjct: 106 AVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIG 165

Query: 166 PNNTLQGIFIVDSRD----TQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDI 218
            +N L  +F+    D    T    +  A+ G +  D    Q + LNDG  ++ SP +KD 
Sbjct: 166 KDNELDKVFVAQLPDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDY 225

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            +++F  Y +Q +        +    + LS L    P +   + E  E   +EFH RL  
Sbjct: 226 QMIEFGGYKMQIKEQQ-----VDERRRKLSAL----PVDELVKVEGAEAV-AEFHWRLAI 275

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L   I  LI++  A  R  VRQ  K   +F ++ +  G F G      K  Q+   IP 
Sbjct: 276 PLAIPIMTLIAVPLA--RVNVRQ-GKFAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP- 329

Query: 339 LYLFLFCISSIFLLM 353
           LYL ++ I    LLM
Sbjct: 330 LYLGMWWIHISALLM 344


>gi|323163036|gb|EFZ48869.1| hypothetical protein ECE128010_0632 [Escherichia coli E128010]
          Length = 150

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQ 137
             P   + I QL  ++Q
Sbjct: 121 GRPWAYAQIYQLEQQSQ 137


>gi|189425645|ref|YP_001952822.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421904|gb|ACD96302.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 379

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F +        ++ + E+ ++   G S  TL+ PVL  A   ++       +  P  
Sbjct: 68  PMAFLLAVLLAFGRLSNDNEITVLKACGLSLGTLLPPVLLTAAAAALLTLFISVVAVPWG 127

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL---YIKISKYN-PNNTLQGIFIVDSRDT 181
            +  KQ++         S + E +F    DDL    + + +Y+    T+Q + I DSRD 
Sbjct: 128 NTGFKQMTMDVARKYAASAIRERIF---RDDLPGIVLYVDQYDEARRTMQRVMIQDSRDP 184

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +     +A+SG +  D       I+L +G +H +     D  ++ F  Y L  ES  S+ 
Sbjct: 185 ERPLTIFAKSGLVSSDEVNGVLRILLKNGSIHTQH--KNDYRLVSFGEYLLTAESGRSTP 242

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            V    D  +  L      +P   P+      +E H R   + FP    + +I+A
Sbjct: 243 PVRTELDLGIGELQR-GSRSPQLAPQARLKMATELHSR---FAFPCATFVFAILA 293


>gi|159043739|ref|YP_001532533.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
 gi|157911499|gb|ABV92932.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
          Length = 380

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/286 (19%), Positives = 120/286 (41%), Gaps = 15/286 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKIS----GYL 56
           +  ++ YIL  +  +F    L IV I W+ + ++    +S   + L +  ++S     YL
Sbjct: 2   LARYDRYILGRLMVTFGFFTLIIVLIYWINRSIRLFERLSGDGQGLALFAQLSLLSLPYL 61

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I  +LP+   F  A+ T N    M  ++E + +   G S   +++P L++ ++ +  + +
Sbjct: 62  IYLMLPLAA-FASAVSTGN---RMGSDSETVALQAAGISAFRIVRPALYMGVMAAALMLL 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
             +++ P  R  I  L  +    ++   LE   F    D + + +++      L  + + 
Sbjct: 118 LAHLLVPMSRVAIADLEEQLADEVSARLLEPGKFQSPIDGVTVFVAEITGEGVLSKVLLS 177

Query: 177 DSRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D RD     IY A    +   D   Q ++++      ++     +S ++F+ + L     
Sbjct: 178 DQRDPAEEVIYTANQALLVRSDTGPQLVMISGLAQFLRA--DGTLSTLQFEDFALGLGEV 235

Query: 234 N--SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
                 ++      + + LL  +P +     +    + SE H+RL 
Sbjct: 236 EVPEDRVLRDLRGWDTARLLRADPADLESVGKSRGAFLSEAHRRLA 281


>gi|261749398|ref|YP_003257083.1| hypothetical protein BPLAN_316 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497490|gb|ACX83940.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 395

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 65/128 (50%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I+LK   Y   +++P+V P    + +      ++ + EL+ I ++G S   ++KP+L + 
Sbjct: 13  IILKFIYYFGISIIPLVIPISILLTSIITYGYISESQELIAIKSSGISLFRVMKPLLCIT 72

Query: 108 ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            LLS+ L+   +   P+ +   ++L  +  +      L+E +F  L  D +IKI K   +
Sbjct: 73  FLLSVGLYFFSDFSIPEAKRKAQELGYQISITHPSLRLKEGVFVNLFPDFFIKIGKKKNS 132

Query: 168 NTLQGIFI 175
             L+ +FI
Sbjct: 133 KLLENLFI 140


>gi|304410148|ref|ZP_07391767.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302141|ref|ZP_07581899.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351557|gb|EFM15956.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914179|gb|EFN44600.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 370

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 131/315 (41%), Gaps = 24/315 (7%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           ++++ + G  +P ++ +V P    +        M    E++I+   G S   + +  L L
Sbjct: 46  SLIMTLIGLNLPYLVILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLIL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYN 165
           A++  +F       + P       Q+  KAQ     + L +  F    +   +  + +  
Sbjct: 106 AVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIG 165

Query: 166 PNNTLQGIFIVDSRD----TQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDI 218
            +N L  +F+    D    T    +  A+ G +  D    Q + LNDG  ++ SP +KD 
Sbjct: 166 KDNELDKVFVAQLPDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDY 225

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            +++F  Y +Q +        +    + LS L    P +   + E  E   +EFH RL  
Sbjct: 226 QMIEFGGYKMQIKEQQ-----VDERRRKLSAL----PVDELVKIEGAEAV-AEFHWRLAI 275

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L   I  LI++  A  R  VRQ  K   +F ++ +  G F G      K  Q+   IP 
Sbjct: 276 PLAIPIMTLIAVPLA--RVNVRQ-GKFAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP- 329

Query: 339 LYLFLFCISSIFLLM 353
           LYL ++ I    LLM
Sbjct: 330 LYLGMWWIHISALLM 344


>gi|300718281|ref|YP_003743084.1| permease [Erwinia billingiae Eb661]
 gi|299064117|emb|CAX61237.1| Putative permease [Erwinia billingiae Eb661]
          Length = 356

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 14/234 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI   I R  ++   F+V +       + +   ++ T +L ++  +  Y +   
Sbjct: 1   MSLIERYITVEIRRLVMVIVGFLVVMFASYSAQRYLTDAANGTLALQVVFDVVCYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    + T   L  +  ++E+  I   G S + L K VLFLAI L++ + +    
Sbjct: 61  LEMLLPVGLYVATAVALGQLYTDSEITAIFAAGASPVRLYKAVLFLAIPLAVVVTLLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +L  ++Q  L  S+L+ N F        +  S+ +P +      ++ SR 
Sbjct: 121 GRPWAYGNIYRLEQQSQSVLDVSHLQANKFNVNGSGRMVMASRIDPASHQLTDALIYSRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +   +Y A S         +++ D      SP +  +++    +Y L  E A 
Sbjct: 181 GKNTNLYRAHS---------VVVTD-----PSPATPSVNLRNGTAYVLDREGAQ 220


>gi|126175309|ref|YP_001051458.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217972440|ref|YP_002357191.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998514|gb|ABN62589.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217497575|gb|ACK45768.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 370

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 131/315 (41%), Gaps = 24/315 (7%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           ++++ + G  +P ++ +V P    +        M    E++++   G S   + +  L L
Sbjct: 46  SLIMTLIGLNLPYLVILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLIL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYN 165
           A++  +F       + P       Q+  KAQ     + L +  F    +   +  + +  
Sbjct: 106 AVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIG 165

Query: 166 PNNTLQGIFIVDSRD----TQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDI 218
            +N L  +F+    D    T    +  A+ G +  D    Q + LNDG  ++ SP +KD 
Sbjct: 166 KDNELDKVFVAQLPDPDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDY 225

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            +++F  Y +Q +        +    + LS L    P +   + E  E   +EFH RL  
Sbjct: 226 QMIEFGGYKMQIKEQQ-----VDERRRKLSAL----PVDELVKIEGAEAV-AEFHWRLAI 275

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L   I  LI++  A  R  VRQ  K   +F ++ +  G F G      K  Q+   IP 
Sbjct: 276 PLAIPIMTLIAVPLA--RVNVRQ-GKFAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP- 329

Query: 339 LYLFLFCISSIFLLM 353
           LYL ++ I    LLM
Sbjct: 330 LYLGMWWIHISALLM 344


>gi|294084200|ref|YP_003550958.1| hypothetical protein SAR116_0631 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663773|gb|ADE38874.1| hypothetical membrane spanning protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 364

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 111/254 (43%), Gaps = 5/254 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F +YI   + R+  +  + ++ I W+ Q ++ + LV +    +   L +S  +IP  L +
Sbjct: 3   FNIYIFNQLFRATCVISMVLIGIMWLFQTIKLLELVVNKGAPIFDFLLMSITVIPLWLTI 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +    V   +  + EL ++   G S   L K  + L +LL+  L+ +   + P
Sbjct: 63  ALPIAGFVAVNWVFHRILADRELTVMQAVGLSPAQLAKAPIALGMLLTSVLYFNSVYLLP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 K L    +  +    L++ +F  +   L + I     N+ +  +FI D+R    
Sbjct: 123 TSFGIYKDLQFNLRNGIPVILLQDGVFTEVVPGLTMFIGSREENDVVSDVFIQDTRTIDK 182

Query: 184 HKIYYAQSGS-IDLD-RQAIILNDGEVHRKSPISKDISIMKFKSYTLQ---TESANSSTI 238
             I  A++G  +  D    +IL +G+    +   +  +++ F++++L     E   S  I
Sbjct: 183 TIILTAENGKFVGKDYHPTLILGNGQRLEVNSDGESGALLLFETHSLSLVTNEKKPSERI 242

Query: 239 VLKANDQNLSFLLN 252
               N+ ++S LL+
Sbjct: 243 ANDMNEDSISNLLD 256


>gi|197119769|ref|YP_002140196.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089129|gb|ACH40400.1| membrane protein, YjgP-related protein [Geobacter bemidjiensis Bem]
          Length = 391

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 130/320 (40%), Gaps = 15/320 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + ++++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P +  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   S  K+L  +   +     ++E +F      + +     +    T+ G+ + D RD
Sbjct: 127 VPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVIVHDERD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +T    +A +G++  D ++      L +G +HR         +++F+ Y L+   A+ S
Sbjct: 187 PRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEE-QGGYRMVQFQEYNLRVALADGS 245

Query: 237 T-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K ++  L  LL+P P     + E++ +   E+H RL       +F L++I     
Sbjct: 246 NKATRKVSEMTLDELLHP-PKGTQQK-EII-SRDLEYHSRLALPFSCFVFTLLAIPLG-- 300

Query: 296 RALVRQRKKIHPIFISLSIS 315
              ++ R+       SLSI 
Sbjct: 301 ---IQNRRSGKAAGFSLSIG 317


>gi|313668051|ref|YP_004048335.1| hypothetical protein NLA_7130 [Neisseria lactamica ST-640]
 gi|313005513|emb|CBN86949.1| conserved hypothetical integral membrane protein [Neisseria
           lactamica 020-06]
          Length = 392

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ I  + P++      +
Sbjct: 33  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTPLLLVLTAFI 91

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 92  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVMPWAELRSRE 151

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 152 YAEILKQKQELSLVEAG-RFNTLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 210

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++A+ L DG  +  +P   D + + F+  +L
Sbjct: 211 FAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSL 253


>gi|309378516|emb|CBX22869.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 371

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ I  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-RFNTLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++A+ L DG  +  +P   D + + F+  +L
Sbjct: 190 FAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSL 232


>gi|254251665|ref|ZP_04944983.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
 gi|124894274|gb|EAY68154.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
          Length = 364

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 19/219 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIIVLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI 218
           K  P+ + +Q +F+  + + + + +  +Q+G  +  +     ++L DG  +  +P   + 
Sbjct: 163 KMTPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNF 221

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            IM+F+ Y ++  S     +   +    L  L NP  +N
Sbjct: 222 KIMEFERYGVKITSKPIVNVPTTSGTPTLELLRNPTRDN 260


>gi|300725026|ref|YP_003714352.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631569|emb|CBJ92278.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
          Length = 366

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 25/254 (9%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N+++ + G  +P +  ++ P    +      + +   +E+ ++   G  +  L+K  L L
Sbjct: 46  NLVISLLGLGVPEMAQLILPLSLFLGVLMTFSKLYTESEITVMHACGLGKSVLVKSALIL 105

Query: 107 AILLSIFLFISENIIE--PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKI 161
           A+L SI    + N+I   P+      Q+ A A+   + + + E  F    D    LYI  
Sbjct: 106 ALLTSIL--AAANVIWFIPESSKYQAQVLADAKTNPSLAAIMEGQFKPSRDGNMVLYIGN 163

Query: 162 SKYNPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDL---DRQAIILNDGEVHRKSPISK 216
            K    NT + +F+   R T   +  + +A  G ++      Q  +L+ G  +  + + +
Sbjct: 164 VK---GNTFENVFLAQLRSTNDQRPSVIFADGGHMEERPNGNQVAVLHQGTRYEGTALLR 220

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
           D  I +F +Y        +     K   ++L  L +   ++           R+EFH RL
Sbjct: 221 DFRITEFTNYQAVIGHQRADIDNNKVEQKSLEQLWHATDDDS----------RAEFHWRL 270

Query: 277 TQWLFPVIFGLISI 290
           T  L  +I  L+ +
Sbjct: 271 TLILSVLIMALMVV 284


>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
 gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
          Length = 359

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 17/183 (9%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P  L +V P  F +    V   MN N EL    + G S   L KPV  L ++ S+  F 
Sbjct: 57  LPAFLGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLLSFY 116

Query: 117 SENIIEPKCRSTIKQ-----LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           S   + PK    +K+     L  K  L++T      N        +   + K  P   L 
Sbjct: 117 SLMFLAPKSNVAMKRELEELLRKKITLSITEKRFSSNF-----PGVTFYVEKLYPEKGLL 171

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILN--DGE---VHRKSPISKDISIMKFKSY 226
             F+   +  +     + + G +      + L+  DG    V  K P  K+   +KFKSY
Sbjct: 172 VNFMASLQKKEKLVTAFGRRGFLRTKGDTVFLDIEDGSAQVVDWKKP--KEFKFIKFKSY 229

Query: 227 TLQ 229
           T++
Sbjct: 230 TVE 232


>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
 gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
          Length = 407

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 2/234 (0%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ + +   F   C  I  I  + Q L  I++V+ + +   I+ ++S  ++P VL     
Sbjct: 39  YLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTENGQPAYIVFELSFLILPKVLITAIS 98

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +  ++  +    ELL++ + G S I L KP L   IL++  LF+  + + P   
Sbjct: 99  ISGFIASVLIINRLYNEEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVHNLNPYAH 158

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
           S   +   + +       ++ + F    +           N  L  I I +     T   
Sbjct: 159 SKFIEAQERIKKEYVTQIIKPDQFISYQNKYTFFFGDKGNNGELSEILIEEQITPDTTLT 218

Query: 187 YYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           + A++G +  + D  A++L +G     + +S   S+++F +           TI
Sbjct: 219 HIAKNGQVIANKDSNALLLRNGSTQSYNKVSGTFSLLQFDTLVFDLNQLRKDTI 272


>gi|153001631|ref|YP_001367312.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|151366249|gb|ABS09249.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
          Length = 370

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 109/265 (41%), Gaps = 20/265 (7%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           ++++ + G  +P ++ +V P    +        M    E++++   G S   + +  L L
Sbjct: 46  SLIMTLIGLNLPYLVILVLPLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLIL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYN 165
           A++  +F       + P       Q+  KAQ     + L +  F    +   +  + +  
Sbjct: 106 AVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIG 165

Query: 166 PNNTLQGIFIVDSRD----TQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDI 218
            +N L  +F+    D    T    +  A+ G +  D    Q + LNDG  ++ SP +KD 
Sbjct: 166 KDNELDKVFVAQLPDPDDETGVTNVVVAKGGRVQEDSTGAQQLNLNDGVRYQGSPKAKDY 225

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            +++F  Y +Q +        +    + LS L    P +   + E  E   +EFH RL  
Sbjct: 226 QMIEFGGYKMQIKEQQ-----VDERRRKLSAL----PVDELVKIEGAEAV-AEFHWRLAI 275

Query: 279 WLFPVIFGLISIVAADKRALVRQRK 303
            L   I  LI++  A  R  VRQ K
Sbjct: 276 PLAIPIMTLIAVPLA--RVNVRQGK 298


>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
 gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
          Length = 358

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           LIP     + P    + T    +S+NRN E++ + + G S   L  P+   ++L+ I L+
Sbjct: 57  LIPDKFTYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTKLSAPIYLFSVLVGISLY 116

Query: 116 ISENIIEPKCRSTIKQLSAKAQ 137
           +S   +EP CR    +L+ +A+
Sbjct: 117 LSSQYLEPYCRLKTFELNTRAE 138


>gi|241760314|ref|ZP_04758409.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|319637672|ref|ZP_07992438.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
 gi|241319192|gb|EER55670.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|317400827|gb|EFV81482.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
          Length = 371

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGNDNIV 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L DG  +  +P   D + + F+  +L
Sbjct: 190 FAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSL 232


>gi|148270164|ref|YP_001244624.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281412494|ref|YP_003346573.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
 gi|147735708|gb|ABQ47048.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281373597|gb|ADA67159.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
          Length = 1061

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 1   MKSFELYILRCIGRSFLMS-CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK    Y+L+     FL+    FIVF++  I + Q  +L+      +  L  +  Y +P 
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEI-LYQLSDLIVRHRVGIEKLFLMLYYYLPY 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   +
Sbjct: 60  FVAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSD 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
            I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +
Sbjct: 120 QIVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTS 169


>gi|170288881|ref|YP_001739119.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
 gi|170176384|gb|ACB09436.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
          Length = 1061

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 2/170 (1%)

Query: 1   MKSFELYILRCIGRSFLMS-CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK    Y+L+     FL+    FIVF++  I + Q  +L+      +  L  +  Y +P 
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEI-LYQLSDLIVRHRVGIEKLFLMLYYYLPY 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   +
Sbjct: 60  FVAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSD 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
            I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +
Sbjct: 120 QIVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTS 169


>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 376

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 43/248 (17%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P ++ +  P      T   L  ++ N+E+  +   G     + +P+L + +L+S+  F 
Sbjct: 64  LPEMVLLGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFW 123

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR------LDDDLYIKISKYNPN-NT 169
             N++ P  +  I+Q+  +A LA   + ++ ++FFR       +D+L+  I + +P  NT
Sbjct: 124 ISNVLLPASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNT 183

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKF 223
           +Q + I+        K   A+   + L  QA+       L++G  HR  P    ++   F
Sbjct: 184 MQDVTILQVDPLPGGKYQLAE---VTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPF 240

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLE-------------TYR 269
               L+               Q+L+ L+ P  P N    PEL E               R
Sbjct: 241 DRKPLEV-------------SQDLAALMQPPVPPNELSLPELAERISRLARSNLNTQPLR 287

Query: 270 SEFHKRLT 277
           +EFH R +
Sbjct: 288 TEFHMRFS 295


>gi|330813916|ref|YP_004358155.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487011|gb|AEA81416.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 358

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 159/357 (44%), Gaps = 23/357 (6%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y +  I RS+      + F+ W+ Q  + + L++    S+++ +    Y +P ++  +  
Sbjct: 9   YFIAEILRSYAFVLATLSFLIWIAQSARFLYLITDMGLSMSVYVPYILYQLPKIVSQMML 68

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +     +     N E+ I   +G S+ T++  +L ++++ +   F     + P   
Sbjct: 69  ISFLISLFISIIKFQNNKEMEIYWLSGVSKKTIVWTILKISLVPTFVAFFLYIYLAPMTG 128

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              + + A ++     + +++N F     +L + + + +    L+ +++ ++  T   K 
Sbjct: 129 LISRNILANSEFTFVNALVKKNNFNSPFRNLTVYVGENDNRGNLEKVYLFENNKTIIAK- 187

Query: 187 YYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKS--YTLQTESANSSTIVLKAN 243
              Q   +++D +  + L DG +H+K+   K I I+KF+   Y      +N +T   K  
Sbjct: 188 ---QGKVLNVDNKNYLQLIDGFIHQKNKNGK-IQIIKFEETLYDFTKYKSNLTTYP-KLQ 242

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF-PVIFGLISIV---AADKRALV 299
           +++L +L N   NN   R E   T   E HKR+ + LF P+I  L   +     +K  LV
Sbjct: 243 ERSLLWLFNELKNN---RKEKNNTI-FEIHKRIFKPLFIPIIALLCCFILYGNNEKFNLV 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           + R  I     SLS+ F +F  F  +I     N ++   LY F  C+  I    + K
Sbjct: 299 KLRFSI----FSLSVLFIIF--FEILISLSSSNIFFQYFLYSFPMCVGIIIYFFLHK 349


>gi|261379717|ref|ZP_05984290.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797387|gb|EFC52734.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 371

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNIV 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L DG  +  +P   D + + F+  +L
Sbjct: 190 FAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSL 232


>gi|15644481|ref|NP_229533.1| hypothetical protein TM1735 [Thermotoga maritima MSB8]
 gi|4982312|gb|AAD36800.1|AE001812_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 1074

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 7   YILRCIGRSFLMS-CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
           Y+L+     FL+    FIVF++  I + Q  +L+      +  L  +  Y +P  + M  
Sbjct: 20  YLLKLSVVPFLIGLGGFIVFVSLEI-LYQLSDLIVRHRVGIEKLFLMLYYYLPYFVAMGV 78

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + I P+ 
Sbjct: 79  PVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQIVPEY 138

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +
Sbjct: 139 QSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTS 182


>gi|86607080|ref|YP_475843.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555622|gb|ABD00580.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 392

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L +  P      T   L  M  ++E+  +   G     ++ PVL + +L+S    +
Sbjct: 84  LPAILVVTFPIAGLFATLLTLGRMGADSEITALRAAGIPYRKVLIPVLCIGLLVSGLALL 143

Query: 117 SENIIEPKCRSTIKQLSAK---AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           +  +I P+    +K L+     AQ AL F   E     R+DDDL+  +   +P       
Sbjct: 144 TNEVIVPETNQKVKTLNTNLILAQDALPFDSEE---IVRVDDDLWFHVGSIDPKTGWMRD 200

Query: 174 FIVDSRDTQTHKIYYAQ 190
            ++  R  +T  + Y Q
Sbjct: 201 LLILDRKAETGHLRYPQ 217


>gi|296315184|ref|ZP_06865125.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837908|gb|EFH21846.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 371

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFNTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L+DG  +  +P   D + + F+  +L
Sbjct: 190 FAKEGNFSLNDNKRTLDLHDGYRYSGTPGKADYNRVSFQHLSL 232


>gi|116747639|ref|YP_844326.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696703|gb|ABK15891.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 423

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 150/362 (41%), Gaps = 44/362 (12%)

Query: 20  CLFIVFIAWVI-QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
           CL  V +  +  ++ Q + ++ +S+ +L  L+ +    +P ++    P    +       
Sbjct: 52  CLMGVSLVLITGRLFQLLKVLFTSSFTLGDLMALVALAMPKLMLFALPMASLLGVLLAFV 111

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE-NIIEPKCRSTIKQLSAKAQ 137
            +N + EL+ +   G         V+ L + +++  F++   +I P  ++   +L + A+
Sbjct: 112 RLNSDNELIALRAAGIGFHQFFPAVVSLLLGVTLISFVNMIFVIPPTGKAFEVKLRSMAR 171

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
             L    ++E  F      L       NP   +++GIF+ D R+ +      A+S  I  
Sbjct: 172 SGLPV-LMKEGTFITAIPKLTFFFQSVNPTELSVRGIFVQDRREEKVRLAIVAESARIVY 230

Query: 197 DRQAIILN----DGEVHRKSPISKDISIMKFKSY--TLQTESANSSTIVLKANDQNLSFL 250
            R +  L     +G + R +   K+   + FK+Y  +L  +    S    K N + ++  
Sbjct: 231 QRDSNHLTFKIANGSITRVADDMKNAQAVSFKAYDLSLSLDELIGSARGSKMNKREMTL- 289

Query: 251 LNPNPNNPNYRPELLET----YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
                    YR  + +T    +  EFH+RL    FP    L+ ++ A   A+ RQR +I 
Sbjct: 290 ------RELYRVIVEKTGDVGHALEFHQRLA---FPSGCLLLGLIGAPLGAVFRQRGRIA 340

Query: 307 PIFISLSI--------SFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLLMIK 355
            I I L +        S G   G ++++H         P L  +   L CI++ F L  K
Sbjct: 341 GITIGLVVFLAYYVILSAGKGLGENHLVH---------PFLACWAPNLLCIAASFYLWRK 391

Query: 356 KK 357
            +
Sbjct: 392 MR 393


>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 383

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/370 (19%), Positives = 151/370 (40%), Gaps = 29/370 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI R I  +FL S    +FI    ++L    L+ +    L+ +  +  +LIP +L    P
Sbjct: 6   YIFREIWPTFLASLFVFIFIMMAARMLSITELIVTRGVHLSQVAGMVLFLIPDILTFALP 65

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               M        ++ ++E++ + ++G S   ++ PV+F ++   +          P   
Sbjct: 66  AVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVAISTFAAPWGN 125

Query: 127 STIKQL-----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            + K L       KA L      ++E +F    ++L   ++ ++     L+ +F+VD RD
Sbjct: 126 RSFKDLLFKIAETKADLG-----IKERIFCEPFENLVFYVNSFSREERMLKDVFVVDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYT----LQTE 231
            +      +    I + R A     ++   G +       +    +KF +Y     L+  
Sbjct: 181 QEMTNTIVSDEAQI-IPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFNTYALNIGLKDV 239

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            A+ ++     ++ +++ L++   + PN   E    Y     + L +   P+    + I+
Sbjct: 240 LADLASRKKAPHELSVNQLISKLKSTPNTDKE----YSRIMRELLEKLSIPLAVFFMGII 295

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
                A +R R +   + +SL + F +++ F  II  I       P   ++   LF I S
Sbjct: 296 GVPLGAQIRGRGRSAGVGVSL-VVFALYYLFLMIIRSIASTGALSPAFAVWIPDLFLIVS 354

Query: 349 IFLLMIKKKY 358
           +  L+ +  +
Sbjct: 355 VVYLLRRASH 364


>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 359

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           Y IP +   V P    M T   L  ++RN+E++ + + G S   +  P+L +A   S+F+
Sbjct: 55  YKIPEIATQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFV 114

Query: 115 FISENIIEPKCRST---IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TL 170
            +S  +I PK  S    I+++  + + + TF  L +N  +  D+   +    ++P++ TL
Sbjct: 115 IVSNELILPKTYSQMRFIEEVLIRKKSSNTF--LRQNNIWHKDNKAILMARAFDPDHQTL 172

Query: 171 QGIFIVDSRDTQT-HKIYYAQSGSID 195
           +G+ +    +  T  +   A+ GS D
Sbjct: 173 RGVTLWSFSEGMTPSRRIDAEQGSWD 198


>gi|134296646|ref|YP_001120381.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
 gi|134139803|gb|ABO55546.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
          Length = 363

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSILF---VLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           K +P+ + +Q +F+  + + + + +  +   + + D DR  ++L DG  +  +P   +  
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVNVVVSHAGHTETRDGDR-FVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  NN
Sbjct: 222 IMEFQRYGVKITSTPVTNVPTTNSTPTPELLSNPTRNN 259


>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 362

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L +  P      T   L  M  ++E+  +   G     +  PVL + +L+S    +
Sbjct: 54  LPAILVVTFPIAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALL 113

Query: 117 SENIIEPKCRSTIKQLSAK---AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           +  +I P+    +K L+     AQ AL F+  E     R+DDDL+  +   +P   L   
Sbjct: 114 TNEVIVPETNQKVKILNKNLILAQDALLFNPEE---IVRVDDDLWFHVGSIDPKTGLMQD 170

Query: 174 FIVDSRDTQTHKIYYAQ 190
            ++  R  +T  + Y Q
Sbjct: 171 LLILDRKAETGHLRYPQ 187


>gi|299530038|ref|ZP_07043465.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
 gi|298722018|gb|EFI62948.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
          Length = 369

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 9/241 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP 
Sbjct: 3   FDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPT 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA---ILLSIFLFISENI 120
           +      +     L+ M R++E++I    G    +L+KP+L  A   IL++  L +    
Sbjct: 63  ILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALG--- 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVDSR 179
           + P     I+Q+  + Q       +    F        +  + K +P++       V SR
Sbjct: 120 VLPWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSR 179

Query: 180 DTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D     +  A+   + +   ++ +IL DG+          + I +FK Y +Q ++ N  T
Sbjct: 180 DPGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVT 239

Query: 238 I 238
           I
Sbjct: 240 I 240


>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
 gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
          Length = 382

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/289 (20%), Positives = 123/289 (42%), Gaps = 16/289 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL      F    L +V + W+ + +     + S  ++  ++L+ +   +P V
Sbjct: 1   MPRIDRYILSQFMTLFGFFALVLVSVYWINRAVSLFEQLISDGQTALVVLEFTALTLPLV 60

Query: 61  LPMVTP---FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           + +V P   F  +   TN L+S    +EL+ +  TG S   + +PVL   +L+++ + + 
Sbjct: 61  ISVVLPIAAFAASAYGTNRLSS---ESELVAMQATGMSPWRMARPVLVFGVLVALMVALL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            + + P  R  +    A+    +T  +L    F      + + I     +  L   F+ D
Sbjct: 118 VHAVVPMARGRLADRQAEIAQNVTAQFLRAGAFQYPVRGVTLYIRDIAADGRLVDFFLED 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVH--RKSPISKDISIMKFK--SYTLQT- 230
           +R+  +   Y +    +    +   +++  G V   R +   + +S+ +F   +Y L T 
Sbjct: 178 ARNPDSQTTYTSTEALLVRTDEGPRLVMMQGMVQNLRHAGNRQSLSVTRFSELAYDLGTL 237

Query: 231 -ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
            ++  S    L+A   +   LL+P+P          +   +E H+RL +
Sbjct: 238 IDTGESRKRDLRA--YSTLRLLDPDPELLAATGATRDRALAEAHERLAK 284


>gi|71083418|ref|YP_266137.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062531|gb|AAZ21534.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 378

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 89/230 (38%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+    I  I WV+Q +  ++ V        +  K +    P ++  + PF   +  + 
Sbjct: 17  FLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKIISRIFPFAIFLAFSY 76

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           +L       EL+I  N G  +I  I   +  ++   +   +   +I P  +   +     
Sbjct: 77  ILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVITPFAQDKARSFIRS 136

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
           + L    S L+   F  +  +L I   + N    L  IF+ +  D    +  +A++  ++
Sbjct: 137 SNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDINNSQTTFAKTAIVN 196

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +D    IL   +    + I+  IS  +F          NS+TI  +   +
Sbjct: 197 IDNNKKILTLYDGKSINVINGKISEFEFSKTDYNISKFNSNTITYQKTQE 246


>gi|228470134|ref|ZP_04055043.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
 gi|228308272|gb|EEK17127.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
          Length = 683

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 9/197 (4%)

Query: 14  RSFLMSCLFIVFIAWVIQILQ----RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           RSFL   L  + I W + ++Q     I+ +      + +LL++  Y    VLP   P   
Sbjct: 19  RSFLPLLLMTILICWFVVLMQFLWQHIDDLVGKGMDVGVLLEVIFYAGLYVLPTAVPLGV 78

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL--AILLSIFLFISENIIEPKCRS 127
            + +     ++    ELL + + G     ++KP++ L   I L +F+++   + +   R 
Sbjct: 79  LLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRGVQKASVR- 137

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKI 186
            + Q+   A+ A     L + +FF   D   I +   +   +TL  + I D  + +  +I
Sbjct: 138 -VYQILFSARYARPELELPKGIFFNGIDGYSIYVGDKDVATSTLYNVMIYDLSEQRAPRI 196

Query: 187 YYAQSGSIDLDRQAIIL 203
             A +G + +D   + L
Sbjct: 197 ILADTGRLLMDDSKLYL 213


>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 364

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 10  RCIGRSFLMS-------CLFIVFIAWVIQILQ---RINLVSSSTESLNILLKISGYLIPT 59
           R I R F+++       C  ++F+   +++L+   +   V  +T     LL+I+   +P 
Sbjct: 9   RYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTT-----LLRIALLRLPA 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +  +  F   + + + L  +NR +EL ++   G S    + P LF+ + + IF     N
Sbjct: 64  YIEFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFN 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK------------ISKYNPN 167
            +  + R+T ++L AKA     F   E NL        +I+             +  N  
Sbjct: 124 PLASRGRATSEKLYAKA-----FGN-EANLLRAQGGGSWIRQNGADGESVLGAAAASNQG 177

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            TL G+ +V + D + H      +GS +L      L D  V R     +     KFKSY 
Sbjct: 178 LTLTGV-LVFAYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPE-----KFKSYL 231

Query: 228 LQT 230
           L T
Sbjct: 232 LST 234


>gi|238921310|ref|YP_002934825.1| hypothetical protein NT01EI_3454 [Edwardsiella ictaluri 93-146]
 gi|238870879|gb|ACR70590.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 366

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 23/240 (9%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N++  + G  IP +  ++ P    +     L  +   +E+ ++   G S+  L+K  + L
Sbjct: 46  NLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A +      ++   + P       ++ A+A+     + L E  F    D  Y+       
Sbjct: 106 AFITGALALVNAFWLSPWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIM 221
           +   Q +F+   R + + +  +  A SG    +    Q ++L+ G  +  + + +D  I 
Sbjct: 166 DKKFQNVFLAQLRPSGSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRIT 225

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET----YRSEFHKRLT 277
            F  Y        S+ I  K      S +L+PN  +      L  +    +R+EFH RLT
Sbjct: 226 DFVDY--------SAIIGHK------SAMLDPNNADQASMEALWHSQEPSFRAEFHWRLT 271


>gi|261401002|ref|ZP_05987127.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|269209119|gb|EEZ75574.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
          Length = 371

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 105/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ I  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-RFNTLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L DG  +  +P   D + + F+  +L
Sbjct: 190 FAKEGNFSLNDNKRTLELRDGYRYSGTPGKADYNRVSFRHLSL 232


>gi|325295268|ref|YP_004281782.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065716|gb|ADY73723.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 361

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 35/251 (13%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP  L M  P  F +    V   +  N EL+ + + G S   L KPV+FL +  SI  F 
Sbjct: 59  IPAFLGMTIPMAFILSVLIVFIQLGNNNELVALKSCGVSTKELSKPVIFLGVAFSILSFY 118

Query: 117 SENIIEPKCRSTI-KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           S   + PK    + K++    +  +T S   +N F      +   + K  P       F+
Sbjct: 119 SLMFLMPKSNVAMKKEIEELVKKKITMSISPKN-FSSNFPGVTFYVEKLYPEKGYLENFM 177

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN--DGE---VHRKSPISKDISIMKFKSYTLQ- 229
           V           +A+ G +  ++  + L+  DG    ++ K P  ++  ++ FK+YT++ 
Sbjct: 178 VSLVKKDELITIFAKKGMLRTEKDTVFLDIQDGTGEFINWKKP--ENFKVLNFKNYTVKL 235

Query: 230 ---TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR----SEFHKRLTQWLFP 282
              T+     +I  K                    PEL+ + R     E  KRL   L P
Sbjct: 236 YRFTKREKFESIRYKT------------------LPELISSNRIEAKVELFKRLGLSLAP 277

Query: 283 VIFGLISIVAA 293
           +I G+++   A
Sbjct: 278 LIVGILAFSLA 288


>gi|297517382|ref|ZP_06935768.1| hypothetical protein EcolOP_07050 [Escherichia coli OP50]
          Length = 340

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 27/265 (10%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F++FI       + +   ++ T +L+++L I  Y +   L M+ P    +     L  M 
Sbjct: 6   FLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVGVTLGQMY 65

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            ++E+  I   G S   L K VL+LAI LSIF+ +      P   + I QL  ++Q  L 
Sbjct: 66  TDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQSQSELD 125

Query: 142 FSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
              L    F   D+   I     +  NN L    I  S   +T +I+ A+  S+D     
Sbjct: 126 VRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIYTSTANRT-RIFRAR--SVD----- 177

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
                  V   SP    + +    +Y +  +  + +  + +    NL   LNP   +PN 
Sbjct: 178 -------VVDPSPEKPTVMLHNGTAYLIDHQGRDDNEQIYR----NLQLHLNPLDQSPNV 226

Query: 261 RPE---LLETYRSEF---HKRLTQW 279
           + +   + E  RS F   H  L QW
Sbjct: 227 KRKAKSVTELARSVFPADHAEL-QW 250


>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 487

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPT 59
           MK   +++L+     F+ +  FI     ++Q L R I+ +        ++ ++  Y+  T
Sbjct: 1   MKKLHIFMLKSFIGPFV-ATFFISMFVLIMQFLWRMIDEIVGKGLEFTVIAELLIYVATT 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++PM  P    + +     S+  N EL+ + + G S   ++KP++ L I L++F F+  N
Sbjct: 60  LVPMALPLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLTVFAFVFSN 119

Query: 120 IIEP 123
            I P
Sbjct: 120 NILP 123


>gi|220906932|ref|YP_002482243.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
 gi|219863543|gb|ACL43882.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
          Length = 374

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 19/236 (8%)

Query: 7   YILRCIGRSFLMS-CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
           YIL  +   FL    +F +  A +  +   +  ++ +  +L + L+I G  +P  + +  
Sbjct: 13  YILAEMAMPFLFGVAVFTLLAATIGVVFDLLRWLADNRLTLAVALQILGLRLPEFIILAL 72

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +    V  ++ R +EL+ +   G S   L  P+L +  LL+   F     I P+ 
Sbjct: 73  PMSMLLTPLLVFNTLGRRSELVALQGCGVSVYRLALPILLVGFLLAGLTFGLNETIAPQT 132

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSRDTQ 182
                Q+   A       + E+N+F+R   D           NTL  IF     D +  Q
Sbjct: 133 NYQALQIQTAALRRPQQKFREKNIFYREFVD-----------NTLSRIFYARQFDGQQMQ 181

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              I     G +D   Q I+ N  E  +K     D       S T  TES++ ++I
Sbjct: 182 RITILNFDQGKLD---QIIVANAAEWDQKQK-HWDFQQGTVYSLTPNTESSSYTSI 233


>gi|167626385|ref|YP_001676885.1| hypothetical protein Fphi_0163 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668816|ref|ZP_04756394.1| hypothetical protein FphipA2_08610 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877348|ref|ZP_05250058.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|167596386|gb|ABZ86384.1| conserved membrane protein of unknown function [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843369|gb|EET21783.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 352

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 13/200 (6%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI-LLKISGYLIPTVLPMVT 65
           YI + +  SFL+  L    + ++   L +++  ++ T + NI L+ I+ Y +P +L  + 
Sbjct: 9   YIFKTVFSSFLIVSLIFCILFFIFTYLAQVS--NNDTGASNIELIIITIYQLPGILYTLL 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P C  +     L+ +  N+E++++ + G S   + K V+ + I+ SI   +    I P  
Sbjct: 67  PACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSIVTMVFGGYIAPVL 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTH 184
           +        K   + T +Y   +L+ +  D  ++ IS  +PN     GI    ++D Q  
Sbjct: 127 Q--------KLADSNTVAYNTHDLWLKTPDG-FMNISNIDPNEGKAYGIRKFITKDNQVQ 177

Query: 185 KIYYAQSGSIDLDRQAIILN 204
           ++ YA+      D  A + N
Sbjct: 178 EVRYAEKAEYVNDATANVFN 197


>gi|206901914|ref|YP_002251684.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
 gi|206741017|gb|ACI20075.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
          Length = 362

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 6/232 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +K++  YI   I   F +     + +  +IQIL    + +     S   +LK+  Y IP+
Sbjct: 3   IKTYHKYIFSEILGPFFLGIFGFILVM-LIQILYEFSDFIIMRRVSFETVLKLLYYKIPS 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL-IKPVLFLAILLSIFLFISE 118
           +   V P             + R+ E+  + ++G    TL + P+LF   L  +  F + 
Sbjct: 62  LFVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFFTLALAPLLFSVFLSFVLWFFTY 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVD 177
           ++I P+      +L  K           EN+FF  ++  Y  + K     N +Q + + D
Sbjct: 122 SLI-PESNYRSNRLIQKYFFLNPAPVKGENIFFHDEEGRYYYVKKIIEDKNIMQNVLVFD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  +  + I Y    ++  +R +++L +G VH     +  I   KF+ + + 
Sbjct: 181 TSSSNKYPIIYTAEEAV-WNRDSLVLKNGVVHHLGDDAFVIWEGKFEEFKIN 231


>gi|225075102|ref|ZP_03718301.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
 gi|224953586|gb|EEG34795.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
          Length = 373

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L +G  +  +P   D + + F++ +L
Sbjct: 190 FAKEGNFSLNDNKRTLDLRNGYRYSGTPGRADYNRVSFQNLSL 232


>gi|51474040|ref|YP_067797.1| hypothetical protein RT0862 [Rickettsia typhi str. Wilmington]
 gi|51460352|gb|AAU04315.1| conserved hypothetical protein (possible transmembrane protein)
           [Rickettsia typhi str. Wilmington]
          Length = 360

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 88/176 (50%), Gaps = 8/176 (4%)

Query: 85  ELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           +L+I+  +G + I L  P L++A+ + +F +   + I P     +K   +  +     S 
Sbjct: 84  QLIILQASGVNNIQLALPALYVALTVMLFAYYISSTILPLSHINLKSRLSFIKNNYISSM 143

Query: 145 LEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII-- 202
           +EE  F ++  ++ + I K    N + GI I D+R+     I +A SG++++     I  
Sbjct: 144 IEEKTFNKITKNITVFIDKKLAGNIMNGIIIFDNRNADKPSIVFAGSGTLNIHGNNPIFE 203

Query: 203 LNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTIVL---KANDQNLSFLLNP 253
           LN G + ++  ++ +++ + F S    LQ +S+ +S       +AN+  +S LL P
Sbjct: 204 LNKG-LRQEYDVNGNLTQLTFDSLMIKLQNDSSLASQRTQHNKEANEYYISELLTP 258


>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 777

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 153/380 (40%), Gaps = 44/380 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCL---FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M+    YI R I  S ++  L   FI+F+  V  I +   LV SS+ + N++L++    I
Sbjct: 1   MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFEL--LVKSSSANTNLVLQLFALAI 58

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P VLP   PF   +     L  +  + E++ +   G S   +I PVL  A L       +
Sbjct: 59  PNVLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFA 118

Query: 118 ENIIEP----KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQ 171
              + P    K    + QL A  QL    + +   +F     +  + + +  P N    +
Sbjct: 119 TLRLTPYSIHKYTDIVNQLEA-TQLT---ADVPSRVFVENFPNTILYVGEVKPGNPSVWK 174

Query: 172 GIFIVDSRDTQTHKIYY---AQSGSIDLDRQAIILNDGEVHR---------KSPISKDIS 219
            +F+ D    +         A    I +  QAI + D   +R            +SKD+S
Sbjct: 175 NVFVADVAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLS 234

Query: 220 IMKFKSYTLQ---TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
                + T Q   T S  S T  L++       LL      P  +P+ +E Y+ E HKR 
Sbjct: 235 SRDTIAPTGQQALTASPPSQT-PLRSIGMGTRQLL----AYPRGKPDWVE-YQIELHKRF 288

Query: 277 TQWLFPVIFGLISI-VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
              +  ++  ++ I +    R   R    ++ IF++    F  + GF  +I    Q    
Sbjct: 289 ALPVACIMLAMVGIPLGIATRKGGRSAGYVNAIFVAF---FCYYMGFVSLIGLARQKTLP 345

Query: 336 IPI-LYL---FLFCISSIFL 351
           +P+ L+L     F +  IFL
Sbjct: 346 VPVALWLPNAVFFVVGVIFL 365


>gi|238023199|ref|ZP_04603625.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
 gi|237865582|gb|EEP66722.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
          Length = 368

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 24/261 (9%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
            +F V +A ++   Q IN++  + +   +++ +  + G+    + P++      + T  V
Sbjct: 17  AIFFVVLA-ILVFTQGINMLGRAADGRVAVDAVTTLIGFWTLGMTPLLLVLTAYISTLTV 75

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRSTIKQL 132
           LT   R++E+ I  ++G      I+PVL  A+ L++ +   +  + P    + R   + L
Sbjct: 76  LTRYWRDSEMAIWLSSGLGLKKWIRPVLTFALPLAVLVATMQISVLPWAEYRSREYAEIL 135

Query: 133 SAKAQLAL----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
             K  L+L    TFS L +      D  +Y   +    N  ++ +FI D  +T    + +
Sbjct: 136 KQKQNLSLVQAGTFSELGKK-----DGRVYFVETFDTDNGIMKNLFIRDIDETGRDSVVF 190

Query: 189 AQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           A+ G  DL  +++ ++L +G  +       D   + F+   L     N++  V+   D  
Sbjct: 191 AKEGRFDLSNNKRTLVLTNGYRYSGIAGRGDFDQVSFQELNLII---NTTPKVVDPIDHR 247

Query: 247 LSFLLNP--NPNNPNYRPELL 265
            +         +NP Y+ EL+
Sbjct: 248 RTIPTAQLIGSSNPQYQAELM 268


>gi|196228189|ref|ZP_03127056.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
 gi|196227592|gb|EDY22095.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
          Length = 380

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 9/216 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR     FLM     + I  +I +    N    +      +L+     +PTV
Sbjct: 1   MNILDRYVLRSFIEPFLMCLAGFIAIWLIIDVSDNFNDFIEAHARFRTILEYYVTQLPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L+ M+R  EL+     G S + ++ P++ + +L++ F F     
Sbjct: 61  ILMSLPVGLMLGLLFSLSRMSRTNELISQLTAGRSVVRVLAPLIGVGVLMTGFCFWLNWE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDD--LYIKISKYNPNNT-LQGIF 174
             P   S  K    K +     + +E    +LF    DD   Y++   + P    +QG+ 
Sbjct: 121 HAPHAESIKKDAMQKIKRGKRATDVEPVLAHLFRDRRDDRTWYVRKLIFQPGEERMQGVH 180

Query: 175 IVDSRDTQTH--KIYYAQSGSIDLDRQAIILNDGEV 208
            V  +D   H  K +YA S   D  +Q   L  G++
Sbjct: 181 -VTQQDETGHILKKWYASSVYYDPAKQEWKLEKGKI 215


>gi|88803032|ref|ZP_01118559.1| putative permease [Polaribacter irgensii 23-P]
 gi|88781890|gb|EAR13068.1| putative permease [Polaribacter irgensii 23-P]
          Length = 482

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK  + YIL+     FL + L ++F+  V+Q+L Q    ++    S + +LK   Y   +
Sbjct: 1   MKILDKYILKTFLGPFLATFLIVLFV-LVMQLLWQTFENIAGKGISFSFILKFLYYTSLS 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++P   P    + +   L S+  N E     ++G S   L++P++FL +LLS   F+  N
Sbjct: 60  IVPQAMPIAVLLSSIMALGSLGENYEFAAAKSSGISLQRLVRPLIFLTLLLSGINFLFLN 119

Query: 120 IIEP 123
            I P
Sbjct: 120 NIFP 123


>gi|296115281|ref|ZP_06833921.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978184|gb|EFG84922.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 111/249 (44%), Gaps = 15/249 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+L+ +   F +S   ++    + ++L   NL++S+  S+   + +   L+P  L 
Sbjct: 12  TLDHYLLQQVTPPFSISLGVVMAALLLERLLALFNLLASNGSSMKTFVSLLTDLVPHYLG 71

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +   +V+  M++N E+  +  +G S   + +P + +  +L +  F     I+
Sbjct: 72  LALPAAMCVSVFSVIRRMSQNHEIDALMASGVSMFRIARPFIVVGAILGVLSFSLYGFIQ 131

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDT 181
           P  R   +     A  +    +L+ ++F     DL +   K  +  + +  +FI D+ + 
Sbjct: 132 PYARYNYRSALYFASHSGWAPHLQSHMFAAPSHDLMLTAEKVDDAGSRMFKVFIRDNSNH 191

Query: 182 QTHKIYYAQSGSI----DLDRQAIILNDGEV----HRKSPISKDISIMKFKSYTLQTESA 233
              +   A+ G +    D D+  + L DG +    H KSP     S++ F  +T +  S 
Sbjct: 192 DLTRYITARKGYLYIPNDEDKIRLDLIDGTIITDRHDKSP-----SVIHF-DHTTELFSP 245

Query: 234 NSSTIVLKA 242
           ++    LKA
Sbjct: 246 HAQLDKLKA 254


>gi|218440672|ref|YP_002379001.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
 gi|218173400|gb|ACK72133.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
          Length = 388

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 20/226 (8%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT 98
           V+ S  SL + L+I    +P  + +  P    + T    + +  ++EL+ + + G S   
Sbjct: 55  VTESGLSLTVALQILSLKMPEFIVLAFPMSILLATLMAYSRLASDSELIALRSIGLSPYR 114

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           L+ P + L+++++   F   + + P+     KQ+ A A      +++E+N+ +      Y
Sbjct: 115 LLVPSIILSLMVTGVTFFFSDYVAPQATQQAKQILADALKKDQPAFVEDNIIY----PEY 170

Query: 159 IKISKYNPNN----------------TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII 202
            KI+  N  +                 +QG+ I+D      ++I  +QS   +LD  +  
Sbjct: 171 RKITLENGRDQTVLTRLFYAEKFDGQQMQGLTILDRSQPGVNQIVTSQSAMWNLDSNSWD 230

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
             +G ++  +P     +I++F+   L    A       K N   +S
Sbjct: 231 FYNGTIYLIAPDGSYRNIVRFQHQKLDLPRAPLDIAKGKQNPAEMS 276


>gi|261364965|ref|ZP_05977848.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
 gi|288566762|gb|EFC88322.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
          Length = 371

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L++  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSMVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L +G  +  +P   D + + F++ +L
Sbjct: 190 FAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSL 232


>gi|332535154|ref|ZP_08410963.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035424|gb|EGI71923.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 354

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMAVCMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
             P+ +   K++  +A         ++ ++ + D   +I I   + N  L G+ +
Sbjct: 121 GAPEAQLHAKEMRNQAIHGGDVFNTQKGVWAK-DGSNFINIEDVDENGRLNGVHM 174


>gi|291327104|ref|ZP_06127004.2| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
 gi|291311564|gb|EFE52017.1| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
          Length = 343

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 15/199 (7%)

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ ++   G  +  L+K  L LA++ ++    +   + P      +Q+ A A+     +
Sbjct: 61  SEITVMHACGLGKSVLVKAALVLAVITAMVAVANITWMLPWSSQYQEQVLADAKANPGLA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGSIDLD---R 198
            + E  F    D  Y+        +  + +F+   R  + Q   +  A SG +  D   R
Sbjct: 121 AMVEGQFKTTKDGNYVLYIGDVKGSNFKNVFLAQLRAANEQRPSVVVADSGYMKEDPDGR 180

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           Q ++LN+G  +  + + +D  I  F +Y    +   + T   +   +N+  L + N    
Sbjct: 181 QVVVLNEGTRYEGTALLRDFRITDFVNYQAIVDHQTAETRSDRVEQKNMLQLWSENT--- 237

Query: 259 NYRPELLETYRSEFHKRLT 277
              PE+     +EFH RLT
Sbjct: 238 ---PEV----NAEFHWRLT 249


>gi|206561015|ref|YP_002231780.1| putative permease [Burkholderia cenocepacia J2315]
 gi|198037057|emb|CAR52978.1| putative permease protein [Burkholderia cenocepacia J2315]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 19/219 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 APIILLITFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI 218
           K +P+ + +Q +F+  + + + + +  +Q+G  +  +     ++L DG  +  +P   + 
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNF 221

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 KIMEFERYGVKITSKPVTNVQTTNSTPTPDLLRNPTRDN 260


>gi|157363796|ref|YP_001470563.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
 gi|157314400|gb|ABV33499.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
          Length = 1102

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 104/219 (47%), Gaps = 10/219 (4%)

Query: 7   YILR-CIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVLPMV 64
           YI++  +G   +    F++F++  ++IL ++ +L+      + +LLK+  Y +P  + + 
Sbjct: 7   YIIKLSVGPMLIGLAGFVIFVS--VEILYQLSDLIVRHRVGIFVLLKVLYYYLPYFVALG 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +    VL+ ++ + EL+ +   G S   LI P L L+I LS   ++  + I P 
Sbjct: 65  IPVGILLSIFWVLSQLSTDHELMALQVHGISLKVLIVPFLILSIALSFVTYVLSDRIVPL 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                  + +K        ++ EN+  ++D+  Y  + KY+  N +    ++   +    
Sbjct: 125 YNQKADSVISKYVYKRPEVFISENVLTKIDESQYFYVKKYDRQNGILEDVVLFRNEPSEE 184

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
           +I  A+   +  ++    + DG+++R   + KD  +++F
Sbjct: 185 EIITAK--KVVKEKNKWFMYDGKMYR---VDKD-GVLRF 217


>gi|264678996|ref|YP_003278903.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
 gi|262209509|gb|ACY33607.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
          Length = 369

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 102/241 (42%), Gaps = 9/241 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP 
Sbjct: 3   FDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPT 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA---ILLSIFLFISENI 120
           +      +     L+ M R++E++I    G    +L+KP+L  A   IL++  L +    
Sbjct: 63  ILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALG--- 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVDSR 179
           + P     I+Q+  + Q       +    F        +  + K +P++       V SR
Sbjct: 120 VLPWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSR 179

Query: 180 DTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D     +  A+   + +   ++ +IL DG+          + I +FK Y +Q ++ N   
Sbjct: 180 DPGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVA 239

Query: 238 I 238
           I
Sbjct: 240 I 240


>gi|116690487|ref|YP_836110.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|170733808|ref|YP_001765755.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
 gi|116648576|gb|ABK09217.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|169817050|gb|ACA91633.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLITFFAFVGW----PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKD 217
           K +P+ + +Q +F+  + + + + +  +Q+G    S D DR  ++L DG  +  +P   +
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETSKDGDR-FVVLEDGRRYDGTPGQPN 220

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
             IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 221 FKIMEFERYGVKITSKPVTNVQTTNSTPTPDLLRNPTRDN 260


>gi|261377636|ref|ZP_05982209.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146390|gb|EEZ72808.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 371

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L++  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSMVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGKDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L +G  +  +P   D + + F++ +L
Sbjct: 190 FAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSL 232


>gi|24372947|ref|NP_716989.1| hypothetical protein SO_1369 [Shewanella oneidensis MR-1]
 gi|24347090|gb|AAN54434.1|AE015581_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 370

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 31/292 (10%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M    E++I+   G S   + +  L LA++  +F       + P       Q+  KAQ  
Sbjct: 79  MYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSE 138

Query: 140 LTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDSRDTQTH----KIYYAQSGSI 194
              + L +  F    +   +  + +   +N L+ +F+    D         +  A+ G +
Sbjct: 139 AGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDPNDEIGLTNVVVAKGGRV 198

Query: 195 DLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
             D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +         K +   L  LL
Sbjct: 199 IEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDERRRKLSALPLGELL 258

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALVRQRK--KIHPI 308
             +       PE +    +EFH RL     P+   +++++A    R  VRQ K  K+ P 
Sbjct: 259 KIDG------PEAV----AEFHWRLA---IPLAIPIMTLIAVPLARVNVRQGKFAKMLP- 304

Query: 309 FISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
             ++ +  G F G      K  Q+   P Y+ + ++ L  +    LL+ K +
Sbjct: 305 --AVLLYLGYF-GLMVAGRKALQDGVIPLYLGMWWIHLSALIMGILLLGKDR 353


>gi|78186598|ref|YP_374641.1| hypothetical protein Plut_0723 [Chlorobium luteolum DSM 273]
 gi|78166500|gb|ABB23598.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 442

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 26/250 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQ---------ILQRINLVSSSTESLNILLK 51
           MK  + YIL+ +   F ++ L I+F+  ++Q         I + I+ +S     + +L  
Sbjct: 1   MKIIDRYILKSLVGPFFLAFLTIMFV-LILQFFANFADRFIGRGIDFMSL----IELLAL 55

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
            S +++    PM       M       S+   +E+ +   +G S   L+ PV+ +  LLS
Sbjct: 56  QSAWMVGLAAPMAVLIGVVM----AFGSLTTTSEMTVFRASGLSLYRLMLPVVIVGFLLS 111

Query: 112 IFLFISENIIEPKCRSTIKQL-SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNT 169
           + +    N+++P+ +   + L S  A+   TF  + EN F  L D   I +   +    +
Sbjct: 112 LLVERFNNVVQPQVKYKARSLMSDIAKAKPTFG-ITENAFSPLVDGYSILVQHADEKTGS 170

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIMKFK 224
           +  I I D+       +  A+ G ID         ++L+DG++H  + P  +    M+F 
Sbjct: 171 IGDIIIYDATRKDYRSVITAKDGVIDFSADGRYLVMMLSDGQIHEVQVPGHRLYRKMEFD 230

Query: 225 SYTLQTESAN 234
            +    ES  
Sbjct: 231 RHRFVFESTG 240


>gi|114048399|ref|YP_738949.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
 gi|113889841|gb|ABI43892.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
          Length = 370

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 119/292 (40%), Gaps = 31/292 (10%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M    E++I+   G S   + +  L LA++  +F       + P       Q+  KAQ  
Sbjct: 79  MYAENEMVILHGVGVSEWYVTRVTLILALINMLFTGYLSLYVAPWAEEQQNQVLEKAQSE 138

Query: 140 LTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDSRDTQTH----KIYYAQSGSI 194
              + L +  F    +   +  + +   +N L  +F+    D         +  A+ G +
Sbjct: 139 AGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPNDEIGLTNVVVAKGGRV 198

Query: 195 DLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
             D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +         K +  +L+ L+
Sbjct: 199 QEDQNGSQQLHLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDERRRKLSALSLADLM 258

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALVRQRK--KIHPI 308
                     PE +    +EFH RL     P+   +++++A    R  VRQ K  K+ P 
Sbjct: 259 KVEG------PEAV----AEFHWRLA---IPLAIPIMTLIAVPLARVNVRQGKFAKMLPA 305

Query: 309 FISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
            +   +  G F G      K  Q+   P Y+ + ++ L  +    LL+ K +
Sbjct: 306 VL---LYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLGKDR 353


>gi|107023405|ref|YP_621732.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
 gi|105893594|gb|ABF76759.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
          Length = 364

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLITFFAFVGW----PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKD 217
           K +P+ + +Q +F+  + + + + +  +Q+G    S D DR  ++L DG  +  +P   +
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETSKDGDR-FVVLEDGRRYDGTPGQPN 220

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
             IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 221 FKIMEFERYGVKITSKPVTNVQTTNSTPTPDLLRNPTRDN 260


>gi|221066429|ref|ZP_03542534.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
 gi|220711452|gb|EED66820.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/241 (19%), Positives = 102/241 (42%), Gaps = 9/241 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP 
Sbjct: 3   FDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLPT 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA---ILLSIFLFISENI 120
           +      +     L+ M R++E++I    G    +L+KP+L  A   IL++  L +    
Sbjct: 63  ILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALG--- 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVDSR 179
           + P     I+Q+  + Q       +    F        +  + K +P++       V SR
Sbjct: 120 VLPWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVVSR 179

Query: 180 DTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D     +  A+   + +   ++ +IL DG+          + I +FK Y +Q ++ N   
Sbjct: 180 DPGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVA 239

Query: 238 I 238
           I
Sbjct: 240 I 240


>gi|22299113|ref|NP_682360.1| hypothetical protein tll1570 [Thermosynechococcus elongatus BP-1]
 gi|22295295|dbj|BAC09122.1| tll1570 [Thermosynechococcus elongatus BP-1]
          Length = 378

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/291 (17%), Positives = 115/291 (39%), Gaps = 10/291 (3%)

Query: 36  INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           +  ++ +   L ILL++ GY +P VL +V P    +     ++ ++   E + + + G  
Sbjct: 49  VRQIADAQLPLTILLQLIGYQLPAVLVLVFPMAVLLAVVGAMSRLSEEGEWIALRSVGIC 108

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLD 154
              ++ PV+  A+L+S           P  +   K+L  +  Q   +     +  +   D
Sbjct: 109 LGRVLIPVVVFALLVSGLTLALNETAVPIAKYESKKLMGELLQQERSLGSGTDIFYPEYD 168

Query: 155 DDLYIKISKYN---PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
               ++   Y      + +QGI ++D    Q  ++  A+S   ++     +L+ G  +  
Sbjct: 169 RHGNVRRLYYGHRFDGSRIQGITVLDFSQPQVTQVISAESAEWNVRESRWLLSQGIAYLI 228

Query: 212 SPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNP---NNPNYRPELLETY 268
           S      ++++F    ++      S  +   +   LS           +P+  PEL+   
Sbjct: 229 SHTGVSRNLLQFDQQEIRLPRPAQSQPLRPTDVNELSITQARRALQRLDPDREPELVRAL 288

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
           +    +   Q    V+F L+ +      +   QR+      IS+++ FG +
Sbjct: 289 KVHLAQSYAQPFLAVVFALLGVGFGLSPS---QRRGRQGFGISVAVVFGQY 336


>gi|115352567|ref|YP_774406.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|115282555|gb|ABI88072.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
          Length = 363

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPLILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           K +P+ + +Q +F+  + + + + +  +   + + D DR  ++L DG  +  +P   +  
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVNIVVSHTGHTETKDGDR-FVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 IMEFQRYGVKITSTPVTNVPTTNSTPTPDLLRNPTRDN 259


>gi|254247471|ref|ZP_04940792.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
 gi|124872247|gb|EAY63963.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
          Length = 364

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 19/219 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRRYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLITFFAFVGW----PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI 218
           K +P+ + +Q +F+  + + + + +  +Q+G  +  +     ++L DG  +  +P   + 
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNF 221

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 KIMEFERYGVKITSKPVTNVQTTNSTPTPDLLRNPTRDN 260


>gi|172061426|ref|YP_001809078.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
 gi|171993943|gb|ACB64862.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
          Length = 363

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPLILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           K +P+ + +Q +F+  + + + + +  +   + + D DR  ++L DG  +  +P   +  
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVNIVVSHTGHTETKDGDR-FVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 IMEFQRYGVKITSTPVTNVPTTNSTPTPDLLRNPTRDN 259


>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 353

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWV-IQILQRINLVSSSTESLNILLKISGYL--- 56
           MK    YI R + ++ L++ LF V + +V +   ++I+   ++     I L   GY    
Sbjct: 1   MKIISKYIARALFKN-LLTILFAVVVIYVAVDFFEKIDDFMAA----KIPLLTVGYFFLL 55

Query: 57  -IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            IP V   V P    +    V+  M R+ E++   + G S  +L+KP+  + ++ S+FLF
Sbjct: 56  RIPYVAAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLF 115

Query: 116 ISENIIEPKCRSTIKQL 132
               II P   +   Q+
Sbjct: 116 AFNEIIVPAAAAEANQI 132


>gi|77361337|ref|YP_340912.1| hypothetical protein PSHAa2421 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876248|emb|CAI87470.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 355

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 82/175 (46%), Gaps = 1/175 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMHAAGMSRLQIISSVMKTAVFMALCMMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
             P+ +   K++  +A         ++ ++ + D + +I I   + N  L G+ +
Sbjct: 122 GVPEAQLQAKEMRNQAIHGGDVFNAQKGVWAK-DGNNFINIEDVDQNGKLNGVHM 175


>gi|91762159|ref|ZP_01264124.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717961|gb|EAS84611.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 378

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/222 (19%), Positives = 86/222 (38%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+    I  I WV+Q +  ++ V        +  K +    P ++  + PF   +  + 
Sbjct: 17  FLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKIISRIFPFTVFLAFSY 76

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           +L       EL+I  N G  +I  I   +  ++   +   +   +I P  +   +     
Sbjct: 77  ILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVITPFAQDKARSFIRS 136

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
           + L    S L+   F  +  +L I   + N    L  IF+ +  D    +  +A++  ++
Sbjct: 137 SNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDINNSQTTFAKTAIVN 196

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +D    IL   +    + I+  IS  +F          NS+T
Sbjct: 197 IDNNKKILTLYDGKSINVINGKISEFEFSKIDYNISKFNSNT 238


>gi|67459766|ref|YP_247390.1| permease [Rickettsia felis URRWXCal2]
 gi|67005299|gb|AAY62225.1| Predicted permeases [Rickettsia felis URRWXCal2]
          Length = 369

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 103/211 (48%), Gaps = 4/211 (1%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I W+ QIL+ + L     + ++    +   ++PT+L ++ P    +    +  ++    +
Sbjct: 35  IVWITQILKLLYLFDKGIKVMD-FFSLIVLVLPTLLFILLPVITVIAVIYIYNNLKVERQ 93

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           L+I+  +G + + L  P L+ A+++ +  +   + I P     +K      +     S +
Sbjct: 94  LIILQASGVNNVQLALPALYAALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYISSMI 153

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAII-L 203
           EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I  L
Sbjct: 154 EEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNNPIFEL 213

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           N G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 214 NKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 243


>gi|171316728|ref|ZP_02905940.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
 gi|171098078|gb|EDT42893.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
          Length = 363

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           K +P+ + +Q +F+  + + + + +  +   + + D DR  ++L DG  +  +P   +  
Sbjct: 163 KMSPDQSKVQNVFVTSTENGKVNIVVSHTGHTETKDGDR-FVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 IMEFQRYGVKITSTPVTNVPTTNSTPTPDLLRNPTRDN 259


>gi|320101899|ref|YP_004177490.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
 gi|319749181|gb|ADV60941.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
          Length = 507

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y++R +  SF ++ L I  I  +  ++      + +   L+ +++I+ YLIP  LP 
Sbjct: 7   LQRYVIRQLLGSFALALLAISSIIVLFLVMAE---AAKAGLGLDQIVQIAPYLIPGTLPY 63

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P       T V   +  + E+  +   G S  T++ P + L+I+LS  L+++ + + P
Sbjct: 64  TVPVALLFSVTVVYGRLAGDNEITAVKAAGLSVWTVLWPCILLSIVLSGALYLAASHVIP 123

Query: 124 KCRSTIKQL 132
           +    +K++
Sbjct: 124 EANHAVKRV 132


>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
 gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 356

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/196 (20%), Positives = 87/196 (44%), Gaps = 2/196 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLMFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ + D   ++ + +  P++ L  I I +  D
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK-DGRSFVNVEEVMPDSELMNIHIYEFDD 179

Query: 181 T-QTHKIYYAQSGSID 195
           T     I  A++G  D
Sbjct: 180 TFHLRTISDAKTGRFD 195


>gi|325527102|gb|EGD04517.1| YjgP/YjgQ like transporter [Burkholderia sp. TJI49]
          Length = 363

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSILF---VLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDI 218
           K  P+ + +Q +F+  + + + + +  +Q+G     D DR  ++L +G  +  +P   + 
Sbjct: 163 KMTPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETRDGDR-FVVLENGRRYDGTPGQPNF 220

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            IM+F+ Y ++  S     +    +   L  L NP  +N
Sbjct: 221 KIMEFQRYGVKITSTPVVNVPTTNSTPTLDLLRNPTRDN 259


>gi|255066291|ref|ZP_05318146.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
 gi|255049501|gb|EET44965.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
          Length = 371

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/223 (19%), Positives = 107/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L++  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSMVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L +G  +  +P   D + + F++ +L
Sbjct: 190 FAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSL 232


>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 61/121 (50%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI     ++F +S  F V +  +      ++ +  +  S+  ++    Y  P +
Sbjct: 1   MKKIHKYITIFFLKTFFISLAFFVLLFVLSDFFSNLSDIVGNGVSIKYIISYYVYYTPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF FA+ +   L  ++   E++++ ++G S   + KPVLF +I++++ +F S+ +
Sbjct: 61  IYFSLPFIFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASKEL 120

Query: 121 I 121
           I
Sbjct: 121 I 121


>gi|189501480|ref|YP_001957197.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496921|gb|ACE05468.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 527

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +  V  S+    EL  + + G   I +++P+LFL  LLSIF++ S   I
Sbjct: 65  PMAFPLATLVSSLMVFGSLGEQLELTALKSAGIPFIRILRPLLFLVTLLSIFVYFSNGYI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD 177
            PK       L    +       ++E +F+    D  I++ +  P+  TL+ I I D
Sbjct: 125 VPKVTVKAHTLLYDLRKKKPSIAIKEGVFYNGIPDYSIRVERKLPDQKTLEDIVIYD 181


>gi|257468008|ref|ZP_05632104.1| hypothetical protein FulcA4_01652 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062294|ref|ZP_07926779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687970|gb|EFS24805.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 362

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 102/226 (45%), Gaps = 16/226 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS----SSTESLNILLKISGYL 56
           +K  + YI +   +SF +S +  V I  V Q+ + I  VS    S+ ES+  +L     +
Sbjct: 3   IKIIDKYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSANESITYILT----M 58

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           IP +L  V P    + +   ++SM  N E++ +   G S  RI L  P+   A++  +  
Sbjct: 59  IPKILIDVAPLAVLLGSLMTVSSMASNLEIISLKTAGISFKRIVLF-PICISAVIAVMVF 117

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTL-QG 172
           +I++++     R   +++    +        ++N F R ++  Y+ +  K N      + 
Sbjct: 118 YINDSLYPYSVRKN-REIKDGERAKREMPVEKKNAFLRGENSNYVYLMGKINRETGFGEN 176

Query: 173 IFIVDSRD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
           I IVD  +   +  +I  A+ G  +  ++  +L D  ++    + K
Sbjct: 177 IEIVDLNEEFNKVERIITAKEGRYNFSKKVWVLKDANIYDGEKLEK 222


>gi|261345122|ref|ZP_05972766.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
 gi|282566810|gb|EFB72345.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
          Length = 365

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 15/199 (7%)

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ ++   G  +  L+K  L LA+L ++    +   + P      +Q+   A+     +
Sbjct: 83  SEITVMHACGLGKNVLVKAALVLAVLTALVAIANITWMLPWSSQYKEQVLGDAKANPGLA 142

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGSIDLD---R 198
            + E  F    D+ ++        N  + +F+   R  + Q   +  A SG +  D   R
Sbjct: 143 AMVEGQFKTTKDNNFVLYIGEVKGNDFKNVFLAQLRTANEQRPSVVVADSGYMKEDANGR 202

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           Q ++L+ G  +  + + +D  I  F +Y    +   +     K   + +  L N N    
Sbjct: 203 QVVVLDQGTRYEGTALLRDFRITDFMNYQAVVDHRTTEVRTDKVEQKTMMQLWNGND--- 259

Query: 259 NYRPELLETYRSEFHKRLT 277
              PE+     +EFH RLT
Sbjct: 260 ---PEI----NAEFHWRLT 271


>gi|161524006|ref|YP_001579018.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351233|ref|YP_001946861.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221199307|ref|ZP_03572351.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221205791|ref|ZP_03578806.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221211524|ref|ZP_03584503.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|160341435|gb|ABX14521.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335255|dbj|BAG44325.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221168885|gb|EEE01353.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221174629|gb|EEE07061.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180592|gb|EEE12995.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 364

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 19/219 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      + + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIIVLITFFAFVGW----PWSNQQSRLIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI 218
           K  P+ + +Q +F+  + + + + +  +Q+G  +  +     ++L DG  +  +P   + 
Sbjct: 163 KMTPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETTKDGDRFVVLEDGRRYDGTPGQPNF 221

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            IM+F+ Y ++  S     +   ++      L NP  +N
Sbjct: 222 KIMEFERYGVKITSKPVVNVPTTSSTPTPELLRNPTRDN 260


>gi|222099907|ref|YP_002534475.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
 gi|221572297|gb|ACM23109.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
          Length = 1048

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++ + EL+ I   G S+  LI P LFL++LLS+ +F   + 
Sbjct: 48  VAMGVPVGVLLSIFWTFSKLSEDRELMAIQVHGISQKNLIVPFLFLSVLLSVIVFFLNDQ 107

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
           + P  +S  ++  +K  L     ++ EN+  ++ +D Y  + KY+   NTL  + I
Sbjct: 108 VVPVYQSRAEEAMSKYVLKKPEVFVVENVISKIGEDQYFYVEKYDEKTNTLWNVVI 163


>gi|170697653|ref|ZP_02888741.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
 gi|170137401|gb|EDT05641.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSIL---FVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           K  P+ + +Q +F+  + + + + +  +   + + D DR  ++L DG  +  +P   +  
Sbjct: 163 KMAPDQSKVQNVFVTSTENGKVNIVVSHTGHTETKDGDR-FVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 IMEFQRYGVKITSTPVTNVPTTNSTPTPDLLRNPTRDN 259


>gi|153808346|ref|ZP_01961014.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
 gi|149129249|gb|EDM20465.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 10/202 (4%)

Query: 12  IGRSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           I +SF+M      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P
Sbjct: 17  IVKSFMMLFVGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLP 75

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +     +     ELL +   G S + +++P++F    L    F  +N++ P  +
Sbjct: 76  LAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGISFYFQNVVGPIAQ 135

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTH 184
           + +  L    +       + E +F+    D  +KI+K N     L  + I D ++  +  
Sbjct: 136 AKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMLYDVLIYDLKEGFEKA 195

Query: 185 KIYYAQSGSIDL--DRQAIILN 204
           ++ YA SG +++  D+Q + L+
Sbjct: 196 RVIYADSGRLEMTADKQHLWLH 217


>gi|237712765|ref|ZP_04543246.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409745|ref|ZP_06086283.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229447177|gb|EEO52968.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352398|gb|EEZ01500.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084616|emb|CBK66139.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
          Length = 632

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 13  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 71

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 72  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAK 131

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I
Sbjct: 132 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARI 191

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 192 IYADSGRLEMTADKQHLWLH 211


>gi|313886927|ref|ZP_07820630.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300780|ref|YP_004442701.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923624|gb|EFR34430.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177843|gb|AEE13533.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 678

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 9/197 (4%)

Query: 14  RSFLMSCLFIVFIAWVIQILQ----RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           RSFL   L  + I W + ++Q     ++ +      + +LL++  Y    VLP   P   
Sbjct: 14  RSFLPLLLMTLLICWFVVLMQFLWQHVDDLVGKGMDVGVLLEVIFYAGLYVLPTAVPLGV 73

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL--AILLSIFLFISENIIEPKCRS 127
            + +     ++    ELL + + G     ++KP++ L   I L +F+++   + +   R 
Sbjct: 74  LLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRGVQKASVR- 132

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSRDTQTHKI 186
            + Q+   A+ A     + + +FF   D   I +  K    +TL  + I D  +  T +I
Sbjct: 133 -VYQILFSARYARPELEIPKGIFFNGIDGYSIYVGDKDAATSTLYNVMIYDLSEQHTPRI 191

Query: 187 YYAQSGSIDLDRQAIIL 203
             A +G + +D   + L
Sbjct: 192 ILADTGRLLMDESKLYL 208


>gi|160885006|ref|ZP_02066009.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
 gi|156109356|gb|EDO11101.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
          Length = 632

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 13  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 71

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 72  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAK 131

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I
Sbjct: 132 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARI 191

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 192 IYADSGRLEMTADKQHLWLH 211


>gi|268594204|ref|ZP_06128371.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268595873|ref|ZP_06130040.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|293399673|ref|ZP_06643825.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
 gi|268547593|gb|EEZ43011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549661|gb|EEZ44680.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|291609924|gb|EFF39047.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
          Length = 384

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 25  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 83

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 84  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRSRE 143

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 144 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 202

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 203 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 245


>gi|294807984|ref|ZP_06766761.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444797|gb|EFG13487.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 19  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 77

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 78  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAK 137

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I
Sbjct: 138 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARI 197

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 198 IYADSGRLEMTADKQHLWLH 217


>gi|253702060|ref|YP_003023249.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776910|gb|ACT19491.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 391

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 16/298 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + + ++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGVPFSDVARMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P L  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPLLFAACATLACLFVTVYA 126

Query: 122 EPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
            P   S  K+L  + AQ +   S ++E +F     D+ +     +    T+ G+ + D R
Sbjct: 127 VPWGNSGFKKLVVEIAQSSAGIS-IKEKIFNNAFPDMVVYTQSLDTKAQTMGGVIVHDER 185

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQ---TES 232
           D +T    +A +G++  D ++      L +G +HR         +++F+ Y L+    E 
Sbjct: 186 DPRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAEE-KGGYRMVQFQEYNLRVSLAEG 244

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            N S    K ++  L  LL+P P     + E+L +   E+H RL       +F L++I
Sbjct: 245 GNKSP--RKVSEMTLDELLHP-PKGAQQK-EIL-SRGLEYHGRLALPFSCFVFTLLAI 297


>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
 gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
          Length = 785

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 99/242 (40%), Gaps = 13/242 (5%)

Query: 1   MKSFELYILR-CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+ F  YILR  +G + L   LF  FI ++  +L  + L      S   +L++ GYL+P 
Sbjct: 1   MRIFTRYILREVVGYALLGGVLF-TFILFMRYLLALMELAVHGAASFADILRLIGYLLPY 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L +  P    +     L+ +  ++E+  +  +G   ++ ++ V  +A+L      ++  
Sbjct: 60  FLTLTIPMAVLIGILLGLSRLAADSEITAMRASGMGVLSFVRIVSIVAVLSWAVGLVNSL 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL---QGIFIV 176
            + P+  + + Q  A+         ++  +F+    +  + +    P +     + +F+ 
Sbjct: 120 YVAPRAAAALLQYEAQGASGEAAIQVQPRVFYEDFKNYVLYVQDVVPGSGAAEWKNVFLA 179

Query: 177 DSRDTQTHKIYYAQSGSI-----DLDRQAIILNDGEVH---RKSPISKDISIMKFKSYTL 228
           D     T  I  +Q   +     D     + L+DG  H     +P   DIS        +
Sbjct: 180 DLTQPATPHIITSQEALVTGTPGDPQTLRMQLSDGSRHDIAGNNPNQYDISTFASTELPI 239

Query: 229 QT 230
           QT
Sbjct: 240 QT 241



 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           LIP +L  VTP C  +       +++R +EL  +  TG S   +  PVL +A+ LS  LF
Sbjct: 473 LIPFILYNVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILF 532

Query: 116 ISENIIEPKC-------RSTIKQLSAK 135
             +    P         RS IK   A+
Sbjct: 533 AFDETYLPAANRKQEALRSVIKGKPAQ 559


>gi|59801587|ref|YP_208299.1| hypothetical protein NGO1228 [Neisseria gonorrhoeae FA 1090]
 gi|194097861|ref|YP_002000906.1| hypothetical protein NGK_0281 [Neisseria gonorrhoeae NCCP11945]
 gi|239998342|ref|ZP_04718266.1| hypothetical protein Ngon3_02533 [Neisseria gonorrhoeae 35/02]
 gi|240014487|ref|ZP_04721400.1| hypothetical protein NgonD_07553 [Neisseria gonorrhoeae DGI18]
 gi|240016933|ref|ZP_04723473.1| hypothetical protein NgonFA_07151 [Neisseria gonorrhoeae FA6140]
 gi|240079727|ref|ZP_04724270.1| hypothetical protein NgonF_00199 [Neisseria gonorrhoeae FA19]
 gi|240117144|ref|ZP_04731206.1| hypothetical protein NgonPID_01570 [Neisseria gonorrhoeae PID1]
 gi|240121009|ref|ZP_04733971.1| hypothetical protein NgonPI_04421 [Neisseria gonorrhoeae PID24-1]
 gi|268602832|ref|ZP_06136999.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|59718482|gb|AAW89887.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933151|gb|ACF28975.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268586963|gb|EEZ51639.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|317163631|gb|ADV07172.1| hypothetical protein NGTW08_0198 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 371

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|78067267|ref|YP_370036.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
 gi|77968012|gb|ABB09392.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
          Length = 363

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 18/218 (8%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           I L + GYL   V+ +VT F   +    VLT   R++E+++   +G S   LIKP+   A
Sbjct: 52  IGLTVIGYL--AVMLVVTLFVSILF---VLTRWYRDSEMVVWLASGVSLTRLIKPIGVFA 106

Query: 108 ----ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-IS 162
               +L++ F F+      P      K + A+ Q     S L    F     +  +  I 
Sbjct: 107 TPIILLIAFFAFVGW----PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIE 162

Query: 163 KYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDIS 219
           K  P+ + +Q +F+  + + + + +  +Q+G  +    +  ++L DG  +  +P   +  
Sbjct: 163 KMTPDQSKVQNVFVTSTENGKVN-VVVSQTGHTETRDGSRFVVLEDGRRYDGTPGQPNFK 221

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           IM+F+ Y ++  S   + +    +      L NP  +N
Sbjct: 222 IMEFERYGVKITSTPVTNVPTTNSTPTPDLLRNPTNDN 259


>gi|299147702|ref|ZP_07040765.1| putative permease [Bacteroides sp. 3_1_23]
 gi|298513885|gb|EFI37771.1| putative permease [Bacteroides sp. 3_1_23]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 19  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 77

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 78  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAK 137

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I + +D  +   I
Sbjct: 138 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHI 197

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 198 IYADSGRLEMTADKQHLWLH 217


>gi|269140438|ref|YP_003297139.1| putative permease [Edwardsiella tarda EIB202]
 gi|267986099|gb|ACY85928.1| putative permease [Edwardsiella tarda EIB202]
 gi|304560231|gb|ADM42895.1| Predicted permease [Edwardsiella tarda FL6-60]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 23/240 (9%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N++  + G  IP +  ++ P    +     L  +   +E+ ++   G S+  L+K  + L
Sbjct: 46  NLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMAL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A +      ++   + P       ++ A+A+     + L E  F    D  Y+       
Sbjct: 106 AFITGALALVNAFWLSPWSSLHSDEVMAEARANPGLASLAEGQFQPSQDGNYVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIM 221
           +     +F+   R + + +  +  A SG    +    Q ++L+ G  +  + + +D  I 
Sbjct: 166 DKKFHNVFLAQLRPSGSQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRIT 225

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET----YRSEFHKRLT 277
            F  Y         S I+      + S +L+PN  +      L  +    +R+EFH RLT
Sbjct: 226 DFVDY---------SAII-----GHKSAMLDPNNADQASMSALWHSQEPSFRAEFHWRLT 271


>gi|253583478|ref|ZP_04860676.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834050|gb|EES62613.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 100/224 (44%), Gaps = 12/224 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS----SSTESLNILLKISGYL 56
           +K  + YI +   +SF +S +  V I  V Q+ + I  VS    S+ ES+  +L     +
Sbjct: 3   IKIIDRYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSADESIVYILT----M 58

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP +L  V P    + +   ++SM  N E++ +   G S   ++   +F++ +++I +F+
Sbjct: 59  IPKILIDVAPLAVLLGSLMTVSSMASNLEVISLKTAGISFKRIVLFPIFISAVIAIIVFL 118

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTL-QGIF 174
             + + P      +++             + N F R ++  Y+ +  K N      + I 
Sbjct: 119 INDSLYPYSVRKNREIKDGGNTRREMPVEKRNAFLRGENSNYVYLMGKINRETGFGENIE 178

Query: 175 IVDSRD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
           IVD  +   +  +I  A+ G  +  ++  +L D  ++    + K
Sbjct: 179 IVDLNEEFNKVERIITAKEGRYNFTKKVWVLKDANIYNGKELKK 222


>gi|315922632|ref|ZP_07918872.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696507|gb|EFS33342.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 13  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 71

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 72  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAK 131

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I + +D  +   I
Sbjct: 132 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHI 191

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 192 IYADSGRLEMTADKQHLWLH 211


>gi|293369978|ref|ZP_06616545.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|292634896|gb|EFF53418.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 19  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 77

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 78  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVVGPIAQAK 137

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I
Sbjct: 138 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARI 197

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 198 IYADSGRLEMTADKQHLWLH 217


>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
 gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
          Length = 441

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 16/237 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+     FL S + I+FI  +  + +  +  +       ++ ++    +  +
Sbjct: 1   MKILYRYILKEHIGPFLFSFITILFILTLQFVTRFFDRFAGKDLGFIVIAELISLQVAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T     ++  ++E+ ++   G S   L+ PVL  A LL+  L    NI
Sbjct: 61  VVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALLTGILERFNNI 120

Query: 121 IEPKCRSTIKQL-----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIF 174
           + P+     K L      AK    LT     EN F  L D   I + +   + NTL+GI 
Sbjct: 121 VLPEANYQAKVLLRDITRAKPTFGLT-----ENAFSGLVDGYSILVREEGSDPNTLEGIT 175

Query: 175 IVDSRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEVHRKSPISK-DISIMKFKSY 226
           I +    +   +  A+SG I    D   +IL   +G++H+     K +  +M F+ +
Sbjct: 176 IYERGSNEDKAVITAESGHIAFTADYHYLILTLFNGQMHKMQGQGKEEYRVMTFEKH 232


>gi|298483137|ref|ZP_07001317.1| permease [Bacteroides sp. D22]
 gi|298270654|gb|EFI12235.1| permease [Bacteroides sp. D22]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 14  RSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +SFLM      FI    +++Q L R    LV    E ++++ +   Y   T++P+  P  
Sbjct: 13  KSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLA 71

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ 
Sbjct: 72  VLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNVVGPIAQAK 131

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKI 186
           +  L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I
Sbjct: 132 LGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARI 191

Query: 187 YYAQSGSIDL--DRQAIILN 204
            YA SG +++  D+Q + L+
Sbjct: 192 IYADSGRLEMTADKQHLWLH 211


>gi|283833700|ref|ZP_06353441.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
 gi|291071386|gb|EFE09495.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
          Length = 356

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 17/261 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YI+  + R   +   F++FI  +    + +   ++ T +L  +L I  Y +   
Sbjct: 1   MRLIERYIMFEVSRLVAIIVGFLIFIFAIYSAQRYLTDAANGTLALTAVLAIVFYKVIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  ++  +E+  +   G+S + L K V++ AI L I + +    
Sbjct: 61  LEMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     I +L  ++Q  L  S+L    F   D    I  +  +P+       ++ +  
Sbjct: 121 GRPWAYMQIYRLEQQSQSELDISHLRARKFNVNDHGHMILAATISPDTGHLTDMLIYTPS 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T  ++ A  G I                 SP++  +++    SY L   +       +
Sbjct: 181 ENTSSLFRAHCGDIT--------------NPSPLTPSVALHSGTSYRLDHHNGQGDNGQI 226

Query: 241 KANDQNLSFLLNPNPNNPNYR 261
               Q L+  L P   NP  R
Sbjct: 227 F---QRLNIQLKPLMQNPITR 244


>gi|261392198|emb|CAX49712.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ I  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|145588807|ref|YP_001155404.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047213|gb|ABP33840.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 17/221 (7%)

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           GYL   VL  V+ F     T  VL    +++E+++   +G S   LI+P+L  A  L I 
Sbjct: 58  GYL--AVLLTVSLFV---ATLIVLVRWYKDSEMIVWFASGLSISNLIRPILQFATPLIII 112

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF---FRLDDDLYIKISKYNPNNTL 170
           + +    + P        +S + Q     S +    F    R +   +I+    +  N +
Sbjct: 113 IALLALFVWPWANRESTLISQRFQQRDDVSMVSSGQFRESARAERVFFIEELDVD-KNEV 171

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           + IF+ DS++ +   +  A +G I   +   ++++L++G  +   P   D  I++F  YT
Sbjct: 172 KNIFVADSKNGRVS-VAVASAGYIQNSEDGEKSVVLHNGRRYEGQPTQPDFRILEFTDYT 230

Query: 228 LQTESANSSTIVLKANDQNLSFLLN---PNPNNPNYRPELL 265
            +  S  +     +  ++ +S LLN   P   NPN R ELL
Sbjct: 231 TKIRSKEALAPPPRDREKTISELLNETEPTTINPN-RAELL 270


>gi|113971161|ref|YP_734954.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117921444|ref|YP_870636.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
 gi|113885845|gb|ABI39897.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117613776|gb|ABK49230.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 31/292 (10%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M    E++I+   G S   + +  L LA++  +F       + P       Q+  KAQ  
Sbjct: 79  MYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWAEEQQNQVLEKAQSE 138

Query: 140 LTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDSRDTQTH----KIYYAQSGSI 194
              + L +  F    +   +  + +   +N L  +F+    D         +  A+ G +
Sbjct: 139 AGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPDPNDEIGLTNVVVAKGGRV 198

Query: 195 DLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
             D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +         K +   L+ L+
Sbjct: 199 LEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDERRRKLSALPLTELM 258

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALVRQRK--KIHPI 308
                     PE +    +EFH RL     P+   +++++A    R  VRQ K  K+ P 
Sbjct: 259 KVEG------PEAV----AEFHWRLA---IPLAIPIMTLIAVPLARVNVRQGKFAKMLPA 305

Query: 309 FISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
            +   +  G F G      K  Q+   P Y+ + ++ L  +    LL+ K +
Sbjct: 306 VL---LYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLGKDR 353


>gi|240127075|ref|ZP_04739736.1| hypothetical protein NgonS_00198 [Neisseria gonorrhoeae SK-93-1035]
 gi|268685430|ref|ZP_06152292.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268625714|gb|EEZ58114.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 119/260 (45%), Gaps = 12/260 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLDRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTCYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L   S     I   ++ +
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLII-STTPKLIDPVSHRR 248

Query: 246 NLSFLLNPNPNNPNYRPELL 265
            +S       +NP ++ EL+
Sbjct: 249 TISTAQLIGSSNPQHQAELM 268


>gi|268683689|ref|ZP_06150551.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268623973|gb|EEZ56373.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 25  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 83

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 84  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRNRE 143

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 144 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 202

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 203 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 245


>gi|146329237|ref|YP_001210036.1| hypothetical protein DNO_1152 [Dichelobacter nodosus VCS1703A]
 gi|146232707|gb|ABQ13685.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 349

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 35/261 (13%)

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F + +   L+ +  + E+  +   G S+  L++P+L+L + L++ L I+   + P  
Sbjct: 68  PVAFILASVMTLSRLYGDCEINALFAGGCSKKHLMQPILYLVLPLAVILVINTLYLLPHV 127

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                QL A+++    +S+   N F  L+  + LY   +    NN  Q  FI+   D   
Sbjct: 128 FERWDQLMAQSRQEALYSFFTPNQFQHLNAHNTLY---TGDKINNGFQP-FIIIQNDNNE 183

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKS------PISKDISIMKFKSYTLQTESANSS- 236
           + + +++ G I  ++    L+  + +R +      P +   S     S  L     ++  
Sbjct: 184 YSMLWSKRGEIQKNQPEHFLHLTQGNRAAWRDDFQPQNCLFSQFAHGSLHLSQSPPSAQQ 243

Query: 237 ---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              +I   A +Q+L+                   +R+EF KRL   L  VIF     + A
Sbjct: 244 RLRSIATGALNQSLA-------------------HRAEFQKRLNPALAVVIFSFAVPLLA 284

Query: 294 DKRALVRQRKKIHPIFISLSI 314
             R    + +++ P FI   I
Sbjct: 285 HTRPRQGRYQRLLPAFILFGI 305


>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 7/235 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ + I   F ++ LF  F+  + +IL   NLV +   SL  +  +  Y+IP  L  V P
Sbjct: 25  YLFKEILSPFAINTLFFTFLFLMAKILFITNLVVNYNMSLPKIGLMLLYIIPNFLVFVIP 84

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               M         + + E++ +   G S   L+ PVL    +  I  F+      P  R
Sbjct: 85  MSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISLYAIPWGR 144

Query: 127 STIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTH 184
            +I++L+ + AQ       L+E  F     D+ + ++K +   + L  +F+ D R     
Sbjct: 145 LSIEKLTMEIAQSNFEIG-LKERTFNDNFKDIMLYVNKVDLKKDELIDVFVEDGRSEDMA 203

Query: 185 KIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               A  G +  +   +     L DG +++ +  +K ++ + F +Y +  +  N+
Sbjct: 204 STIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSVNSIGFDTYDINLDLKNA 258


>gi|187250532|ref|YP_001875014.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
 gi|186970692|gb|ACC97677.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
          Length = 364

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 15  SFLMSCLFI-VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
           +F +  LF+ VFI +++  ++  NL  +    +  + K    L+P V  +  P  F +  
Sbjct: 16  TFFLGALFVLVFIFFMMHFIKLFNLAMTFGADMLWVFKTLVKLVPDVFSLCAPMAFQLAV 75

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
              L +M+ N E++ +   G S   + KP+   A+ L + +F   N I PK   +     
Sbjct: 76  LLTLGNMSENGEIIALRAAGFSFKEITKPLFIFALFLFLVIFSFTNWITPKNTKSFLDAR 135

Query: 134 AKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPN-NTLQGIFIVDSRDTQ--THKIYYA 189
              +  +    LE   F  + D  LY++    +P  N +  + +++  D+   T KI  A
Sbjct: 136 NNVRGRIGKVILEPKTFMEIGDWSLYME--SLDPKTNLMSQVRLLNKNDSANYTTKI-NA 192

Query: 190 QSGSIDL--DRQAIILNDGEVHRKSPISKD---ISIMKFKSY 226
            SG +++  D   + L DG++ R S  S+D   I    FKSY
Sbjct: 193 LSGIVNVTSDYVGLKLFDGQMQRVS--SEDPSKIMAANFKSY 232


>gi|240113703|ref|ZP_04728193.1| hypothetical protein NgonM_09082 [Neisseria gonorrhoeae MS11]
 gi|268599771|ref|ZP_06133938.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268583902|gb|EEZ48578.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 105/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 37  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 95

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 96  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRNRE 155

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 156 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 214

Query: 188 YAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G  S++ +++ + L  G  +  +P   D + + F+   L
Sbjct: 215 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 257


>gi|78222463|ref|YP_384210.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193718|gb|ABB31485.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/297 (19%), Positives = 120/297 (40%), Gaps = 22/297 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI +     F++      F+  + ++L+   +V +       + ++  Y++P+ L +  P
Sbjct: 37  YIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVCRLILYMLPSFLLVAIP 96

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +        ++ ++E+  +   G    +L+ PV   A+L  +          P   
Sbjct: 97  MAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFALPWGN 156

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYN-PNNTLQGIFIVDSRDTQT 183
           ++ K+   +   +   + ++E +F  +DD   L + I  Y+  ++ + GI I D R+   
Sbjct: 157 TSFKRFLYEVIESRAATTIKEKVF--IDDFPGLVVYIDDYDQTSHQISGILIHDERNPDE 214

Query: 184 HKIYYAQSGSIDLDRQA----IILNDGEVHRK-SPISKDISIMKFKSYTLQTE-SANSST 237
               +A +G I    +     + L +G +HR   P      +++F+SY L  +   N+  
Sbjct: 215 PMTIFASTGIIAAAPEEKNVRLHLVNGSIHRGIDP--GGYRLVEFRSYDLHVDLRQNAKK 272

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRS----EFHKRLTQWLFPVIFGLISI 290
                 D  L  L+    N  N      E +R     E HKR       ++F ++ +
Sbjct: 273 NQFDEQDMTLKQLIASRGNRQNN-----EKFRRDVSIELHKRFALPFACIVFAMVGV 324


>gi|119471262|ref|ZP_01613765.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
 gi|119445728|gb|EAW27011.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
          Length = 354

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ ++++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKSVGRGSYDLITAMLYTLYSIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ ++I +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAMFMAICMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A         ++ ++ + D + +I I   + +  L G+       
Sbjct: 121 GAPEAQLRAKEMRNQAIHGGDVFSAQKGVWAK-DGNNFINIEDVDESGKLNGL------- 172

Query: 181 TQTHKIYYAQS---GSIDLDRQAIILNDGEVHR 210
              H  Y+  S     I   ++AI   DG + R
Sbjct: 173 ---HMYYFDSSLELTQITKAKEAISRKDGWLLR 202


>gi|240122360|ref|ZP_04735316.1| hypothetical protein NgonP_00185 [Neisseria gonorrhoeae PID332]
 gi|240125094|ref|ZP_04737980.1| hypothetical protein NgonSK_02547 [Neisseria gonorrhoeae SK-92-679]
 gi|254494457|ref|ZP_05107628.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268680947|ref|ZP_06147809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|226513497|gb|EEH62842.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268621231|gb|EEZ53631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 371

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVIPWAELRNRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|124006213|ref|ZP_01691048.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
 gi|123988137|gb|EAY27795.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
          Length = 491

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 86/196 (43%), Gaps = 2/196 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +L+     F+++   +VFI  V Q+LQ ++       S  +  ++  Y    +
Sbjct: 1   MKKIDKLVLQSFFGPFILTLSVLVFIFLVQQLLQYLDEFMGKGLSYLVFAELVFYFSLHI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PMV P    + +     ++  + EL  + ++G S I ++ P+  + +  ++  F   N 
Sbjct: 61  IPMVLPLATLLASLITFGNLGEHHELTAMKSSGISLIRVLTPLFMVVVCFAVVSFWFNNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSR 179
           I PK       L    +       ++E  F+    +  IK++ K+    TL+ + I D  
Sbjct: 121 IVPKANLDAYSLLYDIRQTKPALDIKEGAFYGGIPNYSIKVNHKFPDGRTLKDVIIYDHS 180

Query: 180 DTQTHK-IYYAQSGSI 194
             + +K +  A SG +
Sbjct: 181 GRRGNKQVILADSGQM 196


>gi|121635227|ref|YP_975472.1| hypothetical protein NMC1490 [Neisseria meningitidis FAM18]
 gi|254805325|ref|YP_003083546.1| putative permease [Neisseria meningitidis alpha14]
 gi|120866933|emb|CAM10693.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis FAM18]
 gi|254668867|emb|CBA06967.1| putative permease [Neisseria meningitidis alpha14]
 gi|254669825|emb|CBA04193.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672903|emb|CBA07222.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325138630|gb|EGC61189.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           ES14902]
 gi|325142745|gb|EGC65120.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           961-5945]
 gi|325198680|gb|ADY94136.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
          Length = 371

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|126696921|ref|YP_001091807.1| putative permease [Prochlorococcus marinus str. MIT 9301]
 gi|126543964|gb|ABO18206.1| possible permease [Prochlorococcus marinus str. MIT 9301]
          Length = 401

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 85/195 (43%), Gaps = 18/195 (9%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           LK+  + +P+ L +  P    + T      ++ N+ELL + + G     +I P + L+I 
Sbjct: 73  LKVLFFSLPSFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIF 132

Query: 110 LSIFLF-ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF-----RLDDD------- 156
           ++   F  ++N++    +   K L A    + +    ++N+ F     R+          
Sbjct: 133 MTGLTFYFNDNLVPASNKLAEKTLRAGIGSSFSAEQRKDNIMFSRYGSRISSSNKKPTKT 192

Query: 157 ----LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS 212
                +I  + +  NN ++G+ ++D       +I  A++G  D    + I +DG +    
Sbjct: 193 NTFLTHIFYASWYENNIMEGVTVLDFSREDFQQILKAKNGVFDKKSSSWIFSDGNIVSID 252

Query: 213 PISKDISIMKFKSYT 227
           P  +  +I +F+ YT
Sbjct: 253 PSGQTTNI-QFQEYT 266


>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
 gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 356

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/196 (19%), Positives = 87/196 (44%), Gaps = 2/196 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLVFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ + D   ++ + +  P++ L  I I +  D
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK-DGRSFVNVEEVMPDSGLMNIHIYEFDD 179

Query: 181 T-QTHKIYYAQSGSID 195
           +     I  A++G  D
Sbjct: 180 SFHLRTISDAKTGRFD 195


>gi|158337152|ref|YP_001518327.1| permease YjgP/YjgQ [Acaryochloris marina MBIC11017]
 gi|158307393|gb|ABW29010.1| permease YjgP/YjgQ, putative [Acaryochloris marina MBIC11017]
          Length = 390

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 24/266 (9%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT 98
           VS +   + I L I    +P  + +  P    +     L+ +  + ELL + + G     
Sbjct: 52  VSEARLPIAIALSILTLQLPYFVSLAIPMSVLLACLLTLSRLQSDGELLALQSAGLHLNR 111

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF------- 151
           LI   L  ++L  +F+F     + P  ++    L  +   A  FS    ++ +       
Sbjct: 112 LIGSCLGFSLLACLFMFGLTESLVPVSQAHSHHLLRQTLQAGQFSLQGRHIVYPDIGPNQ 171

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
            L    Y +  +     TL GI ++D       ++  AQS + + +R   I  DG ++  
Sbjct: 172 ELRRLFYAQTGQ---GQTLSGITVIDWTLPNNQQVLIAQSATWNAERNIWIFKDGSIYAI 228

Query: 212 SPISKDISIMKFKSYTLQ-------TESA-NSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
                +  I++F    LQ       T+S  N + + L  + Q L+ L          RP 
Sbjct: 229 GTDGAEKHIIEFSKQELQLPPQLSLTDSDINPNGVTLAQSQQLLTKLRQTG------RPT 282

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLIS 289
            +     + H+++      +IFGL+ 
Sbjct: 283 QIRALAIQIHRKIALPFTVIIFGLVG 308


>gi|294055919|ref|YP_003549577.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615252|gb|ADE55407.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 382

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 81/196 (41%), Gaps = 3/196 (1%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTVLPMVT 65
           ++ + I  + L++    +F+      ++ +  LV++        +K+ G LIP V     
Sbjct: 8   HVFKEIAVAILLAMGLFIFVLLTGNAIRDVAALVAAGKLDAMTFIKLMGLLIPYVAAYAL 67

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P      T   L  ++   E+  + + G S   +  PV F+A +  +   +      P+ 
Sbjct: 68  PLGILTGTLMALGRLSSQREITAMKSAGLSLYQIASPVFFIAFIAMVLSLVVNLDFAPRA 127

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-TQTH 184
           +S  K++ A         ++EE  F        I +  ++    ++  ++ +  D  Q  
Sbjct: 128 KSAFKEMLASTISENPVKFIEEKKFITGFPGYVIYMGDHD-GGLMKDFWVWELDDRKQVT 186

Query: 185 KIYYAQSGSIDLDRQA 200
           +   A+SG +D DR+A
Sbjct: 187 RFVRAESGELDYDREA 202


>gi|15677420|ref|NP_274576.1| hypothetical protein NMB1570 [Neisseria meningitidis MC58]
 gi|304387021|ref|ZP_07369276.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|7226817|gb|AAF41923.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304338893|gb|EFM04992.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|316983818|gb|EFV62798.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325140780|gb|EGC63294.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
 gi|325199831|gb|ADY95286.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
          Length = 371

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|197105522|ref|YP_002130899.1| hypothetical protein PHZ_c2059 [Phenylobacterium zucineum HLK1]
 gi|196478942|gb|ACG78470.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 386

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 23/235 (9%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           S S+E    + +++  L+P  + +  P  F +    V+  MN+ +E+  +   G S   L
Sbjct: 30  SESSERFTFVAQLAVNLVPHYVGLTLPAAFFIALIIVVNRMNQASEIDALLAAGVSLTRL 89

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
             P L LA +LS    I    ++P  R   + +   AQ A     + E      +DDL +
Sbjct: 90  AAPYLVLAGVLSFLTLIVFGALQPYSRYAYRAVLHAAQNAGWSGQVPEGTIIAPNDDLIM 149

Query: 160 KISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA------IILNDGEV---- 208
              + +     L  +FI   R T   +     +G  +L R A      ++L DG+     
Sbjct: 150 TTDQADAAGQRLTRVFI--RRLTPEGREEVTTAGVAELRRTADGKNVTLMLKDGQQLRFN 207

Query: 209 HRKSPISKDISIMKFKSYTLQTE-SANSSTIVLKANDQ---NLSFLLNPNPNNPN 259
            R  P      ++ F+ +T+Q   S  +  +  +  D+   NL F L    N+P 
Sbjct: 208 RRGEP-----ELLSFEDFTMQLPLSGPARLLRARGGDERELNL-FELAKKANDPQ 256


>gi|325132745|gb|EGC55428.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 105/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 37  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 95

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 96  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 155

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   + +  +Y   +    +  ++ +F+ +        I 
Sbjct: 156 YAEILKQKQELSLVEAG-EFNSLGKRNGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 214

Query: 188 YAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G  S++ +++ + L  G  +  +P   D + + F+   L
Sbjct: 215 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 257


>gi|302037951|ref|YP_003798273.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
 gi|300606015|emb|CBK42348.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
           defluvii]
          Length = 361

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 20/193 (10%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           +LK+  +L+P+ L +  P    + T      ++ + EL+ +   G S + L + V   A 
Sbjct: 51  VLKVFAHLLPSFLVLTLPIAGIIATITAFGRLSLDKELVAMRAAGFSLLRLSQSVFIFAA 110

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY----IKISKY 164
           L+     +     +P     +K+++         + L + L   LD  ++     K++ Y
Sbjct: 111 LVCGLTLVMAQYGQPWSNVNLKKVA--------LNLLRDELVLELDRGVFNEAIPKMTIY 162

Query: 165 NPNNTL----QGIFIVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISK 216
            P+       +GIF+ D R+    +I  AQ   +  D    + A+ L +G +H +    +
Sbjct: 163 VPDAQEGQDNRGIFVADERNPADPRIIVAQQYQVMTDPASSQVALRLMNGVIHSRPQNPE 222

Query: 217 DISIMKFKSYTLQ 229
           +   + F SY L+
Sbjct: 223 EYQKISFTSYDLK 235


>gi|291045045|ref|ZP_06570753.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011048|gb|EFE03045.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 103/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 25  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 83

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + P    + R 
Sbjct: 84  STLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVIPWAELRSRE 143

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 144 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 202

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 203 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 245


>gi|315125734|ref|YP_004067737.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
 gi|315014248|gb|ADT67586.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
          Length = 355

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 82/173 (47%), Gaps = 1/173 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + + +V I+ +I+ ++++  V   +  +   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALMVLVGISTLIKFIEQLKSVGRGSYDIMTAMLYTIYSIPDD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMALCVMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             P  +   K++  +A         ++ ++ + D + +I I   + N  L+G+
Sbjct: 122 GAPAAQLHAKEMRNQAIHGGDVFNAQKGVWAK-DANNFINIEDVDQNGMLRGV 173


>gi|209545529|ref|YP_002277758.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533206|gb|ACI53143.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 402

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 13/184 (7%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           N+++S   +L I   +   L+P  L +  P    +   +V+  M++N E+  +  +G S 
Sbjct: 52  NVLASDGGTLKIFAGLLADLVPHYLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSL 111

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
           + + +P + +  +L +  F     I+P  R   +Q    A  A    +L+  +F    D 
Sbjct: 112 LRIARPFVVMGAVLGLVGFSLYGFIQPYARYDFRQALYIASHAGWTPHLQARMFAAPSDT 171

Query: 157 LYIKISKYNPNNT-LQGIFIVD-----SRD--TQTHKIYYAQSGS---IDLDRQAIIL-- 203
           L +   +     T L+ +FI D      RD    + ++     G+   +DL    I+   
Sbjct: 172 LMLTADQVQGAGTRLRRVFIRDKSAGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDR 231

Query: 204 NDGE 207
           NDG 
Sbjct: 232 NDGR 235


>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
 gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
          Length = 772

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 32/209 (15%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI---PTVLPMVTPFCFAM 71
           SF+M  LF  F            LV     + + LL +  YLI   P+++ ++TP    +
Sbjct: 427 SFVMLMLFFTFF----------ELVGDIIRNHSSLLVVGEYLIDLTPSMIYLITPLAVLI 476

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC------ 125
               V   MNR++E+  +  TG S   ++ P++ +A L+++ LF       P+       
Sbjct: 477 AVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAVGLFFFNEYYVPQANRKQQA 536

Query: 126 -RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI----SKYNPN-NTLQG--IFIVD 177
            R+ IK L A+     T S+  E   F   +  +  +      ++P+ NT     +F  D
Sbjct: 537 LRNEIKGLPAQ-----TTSHPGEQWMFGKREPGHPGMIFYYQYFDPDTNTFLNLTVFEFD 591

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDG 206
            +     K  +AQ  S D      IL DG
Sbjct: 592 PQSFTLMKRTFAQMASWDQKDHRWILQDG 620


>gi|240116444|ref|ZP_04730506.1| hypothetical protein NgonPID1_09463 [Neisseria gonorrhoeae PID18]
 gi|260441666|ref|ZP_05795482.1| hypothetical protein NgonDG_11382 [Neisseria gonorrhoeae DGI2]
 gi|268602116|ref|ZP_06136283.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268586247|gb|EEZ50923.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 371

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 118/260 (45%), Gaps = 12/260 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    NL  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGEFNNLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L   S     I   ++ +
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLII-STTPKLIDPVSHRR 248

Query: 246 NLSFLLNPNPNNPNYRPELL 265
            +S       +NP ++ EL+
Sbjct: 249 TISTAQLIGSSNPQHQAELM 268


>gi|308050967|ref|YP_003914533.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
 gi|307633157|gb|ADN77459.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 109/260 (41%), Gaps = 19/260 (7%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVLP 62
            +LYI R I  +  +  L +  ++ +I+ + ++ LV      + ++ L +  +L+P  + 
Sbjct: 5   LDLYIARTIINTSALCLLVLTGLSGLIKFVDQLRLVGRGDFTTWDVALYVL-FLVPRDIE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    +     +  +  ++EL+++   G SR+ +   V+  A+ L I   +    + 
Sbjct: 64  MFFPIAAMLGALIGMGMLASSSELVVMQAAGLSRLNIAASVMKTAVPLMIIAMLIGEYVA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDT 181
           P    T +++ A+     +        + + D +L++ I++     TL+G+ I     D 
Sbjct: 124 PVSEQTAREMRAQKTSGGSLISSSTGTWAK-DGELFVNITEVQDARTLKGVTIYRFDGDN 182

Query: 182 QTHKIYYAQSGSID--------------LDRQAIILNDGEVHRKSPISKD-ISIMKFKSY 226
              +I +A+ G  D               D Q   L+  E+   S ++ + + ++  K  
Sbjct: 183 LLREITFAEQGLYDGKAWRLLDVTETDLTDEQVSTLDRDELRWPSSLTPEKLQVVTVKPE 242

Query: 227 TLQTESANSSTIVLKANDQN 246
            L  E        LKAN Q+
Sbjct: 243 GLSIEGLIDYVDYLKANRQD 262


>gi|329850877|ref|ZP_08265722.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
 gi|328841192|gb|EGF90763.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
          Length = 385

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 115/274 (41%), Gaps = 7/274 (2%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           IA + Q L +  LV    +S    ++++   +P +  ++ P    + T   LT +    E
Sbjct: 15  IALISQSLTQFELVVERGQSAWTFIRVTLLSMPLLSGLIFPIALFVGTLVALTRLQGEHE 74

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
                 +G S   +  P++ + +   +F   S   ++P    ++++   K +  L  + +
Sbjct: 75  FTAAFASGMSLRQVSSPIIRIGVYFLLFSLASNLFLQPWSARSMREELFKVKNDLVSTLV 134

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRDTQTHKIYYAQSGSIDL--DRQAII 202
           +E  F      L I + + + N+ L+ I+I + + +    + Y A+ G I        +I
Sbjct: 135 KEGEFSTSPSGLTIYVQRIDQNSLLRQIYIRIPATEGGADRTYVAREGKITQVGTESLLI 194

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPN----PNNP 258
           L +G     S    D       S  +    A+  ++  K +++ L  L  PN     +  
Sbjct: 195 LRNGSTQWVSGGELDHITFDETSIPISDYFASDDSLNFKESERYLHELFFPNLALPGDGG 254

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           NY  + +    +E H RL   L+ + F L++I+A
Sbjct: 255 NYERKNVGKLMAEGHARLASPLYNLSFVLLAIMA 288


>gi|217966587|ref|YP_002352093.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
 gi|217335686|gb|ACK41479.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
          Length = 364

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 6/232 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           +K++  YI   I   F +     + +  +IQIL    + +     S  ++LK+  Y IP+
Sbjct: 5   IKTYHKYIFSEILGPFFLGIFGFILVM-LIQILYEFSDFIIMRRVSFEVVLKLLYYKIPS 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL-IKPVLFLAILLSIFLFISE 118
           +   V P             + R+ E+  + ++G   ++L + P+LF  +L  I  F + 
Sbjct: 64  LFVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFLSLTLTPLLFSILLSLILWFFTY 123

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD 177
           ++I P+      +L  K           EN+FF  ++  Y  + K   N N +Q + + D
Sbjct: 124 SLI-PESNYRSNRLIQKYFFLNPAPIKGENVFFHDEEGRYYYVKKIIENRNVMQNVLVFD 182

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  +  + I Y    +I  +R ++IL +G VH     S  +   KF+ + + 
Sbjct: 183 TSSSNKYPIIYTAEEAI-WNRDSLILKNGVVHHLGDDSFVVWEGKFEEFKIN 233


>gi|162148704|ref|YP_001603165.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787281|emb|CAP56875.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 402

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           N+++S   +L I   +   L+P  L +  P    +   +V+  M++N E+  +  +G S 
Sbjct: 52  NVLASDGGTLKIFAGLLADLVPHYLGLALPAAICVSVFSVVRRMSQNNEIDALMASGVSL 111

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
           + + +P + +  +L +  F     I+P  R   +Q    A  A    +L+  +F    D 
Sbjct: 112 LRIARPFVVMGAVLGLVGFSLYGFIQPYARYDFRQALYIASHAGWTPHLQARMFAAPSDT 171

Query: 157 LYIKISKYNPNNT-LQGIFIVD 177
           L +   +     T L+ +FI D
Sbjct: 172 LMLTADQVQGAGTRLRRVFIRD 193


>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
 gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
           15444]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 22/193 (11%)

Query: 29  VIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           +I +++++  +    E +L   L++S   +P ++    PF     T    T +NR +EL 
Sbjct: 32  MIDVVEQMRTIGGDVEITLLDALRLSLMKLPMIIEQTLPFALLAATMMAFTRLNRRSELS 91

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK--------AQLA 139
           II  +G S    + PV+ L + L IF  ++ N +  +   + +   A+         Q+A
Sbjct: 92  IIRASGLSAWRFLTPVIVLGVALGIFSSLALNPLAARLSQSFEAERARLLDVGREVVQVA 151

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID---- 195
            T  +L +      DD     I      +   G  ++D +  +  ++Y  +  + D    
Sbjct: 152 ETGVWLRQG-----DDSSQYVIHARRVEDG--GRTLLDVKIIEEQRLYNGRQPTNDFAFV 204

Query: 196 --LDRQAIILNDG 206
             +D +  +LN+G
Sbjct: 205 RRIDAEKAVLNEG 217


>gi|261819786|ref|YP_003257892.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
 gi|261603799|gb|ACX86285.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
          Length = 370

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 101/252 (40%), Gaps = 22/252 (8%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N+++ + G  +P ++ ++ P    +        +   +E+ ++   G  +  L+K  L L
Sbjct: 46  NLVISLLGLGVPEMVQLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A+   I   I+   + P      +++ A+A+     + L E  F        +       
Sbjct: 106 AVFTGIIATINVMWLSPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMK 222
            +  Q +F+   R +   +  +  A  G I  +   Q + L++G  +  + + +D  I  
Sbjct: 166 GSEFQHVFLAQLRPSGNARPSVVVADRGHITNEEGAQVVTLDNGSRYEGTALLRDFRITD 225

Query: 223 FKSYTL----QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           F +Y      Q  + N+S +       ++  L N + ++           R+EFH RLT 
Sbjct: 226 FTNYQAVIGHQAVTLNNSDV----QQMDMRTLWNSDAHDA----------RAEFHWRLTL 271

Query: 279 WLFPVIFGLISI 290
            L  +I  L+ +
Sbjct: 272 ILSVLIMALMVV 283


>gi|194336947|ref|YP_002018741.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309424|gb|ACF44124.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 441

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 22/240 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--------TESLNILLKI 52
           MK  + YIL+    SFL + + I+F+     ILQ     +          T  + ++L  
Sbjct: 1   MKIIDRYILKAHVGSFLFAFVTIIFV----LILQFFATFADRFMGKGIGFTAMVELILLQ 56

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           S +++    PM       M       S+   +E+ +   +G S   L+ PVL   +LLS+
Sbjct: 57  SAWMVGLAAPMAVLVSVVM----AFGSLTTTSEMTVFRASGISLYRLMMPVLLAGLLLSL 112

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQ 171
           F+    N++ P+     K L      +     L EN F  L D   I +   + ++  L+
Sbjct: 113 FVERFNNVVLPEANYYAKSLMVDIARSKPAFGLAENAFSTLVDGYSIFVRSTDEHSKELR 172

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEVHR-KSPISKDISIMKFKSY 226
           GI I D+  +    +  A+ G+ID   D   +++   +GE+H+ + P  K    M F+ +
Sbjct: 173 GIVIYDASRSDYKTMVTAEKGTIDFSGDDHYLVMTLFNGEIHQVRQPDHKSYRNMSFQKH 232


>gi|158521442|ref|YP_001529312.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510268|gb|ABW67235.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 391

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 118/292 (40%), Gaps = 15/292 (5%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+L   N + +    L +++ +  Y  P  L  V P    M        M+ + E++ + 
Sbjct: 33  QLLDITNFIVNYGTGLGVVMLMLVYSTPYFLVYVIPISTMMAVLLTFLRMSGDNEIVALK 92

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
           ++G S   L  PV+   +   +   +      P+ +   KQL+     +     + +  F
Sbjct: 93  SSGVSLYRLFYPVMGFCVAACLLTLLMTLWGLPRGKVAFKQLAYTVVTSNPNLGIVDREF 152

Query: 151 FRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII----LND 205
             L + + + + +++     L  +FI D R         A SG++D+D    +    L D
Sbjct: 153 NTLFNGITLYVGQFDKKQRVLSDVFIEDQRSAGKPVTICAPSGTLDVDMVGQVVRLSLAD 212

Query: 206 GEVHRKSPISKDISIMKFKSYT--LQTESAN--SSTIVLKANDQNLSFLLNP-NPNNPNY 260
           G +++     +   +++F++Y   L  E A   +ST      + +L+ L +         
Sbjct: 213 GRMYQVDLRDRSSRVIRFETYDIHLDLERAGQVASTAARSEKEMSLAELFDHIQKAGAAG 272

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
            P    + R E HK+ +     V+ GL+++    +    R RK    I ++L
Sbjct: 273 LPR--GSARMELHKKFSIPFACVVLGLLAVPLGVQ---ARGRKTSSGIGLAL 319


>gi|333029769|ref|ZP_08457830.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
 gi|332740366|gb|EGJ70848.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIP 58
           +K  + ++L+  G  F+ +  FI    +++Q L R   +LV    E + +L +   Y   
Sbjct: 4   LKKLDKFVLKSFGLLFI-ATFFICLFIFMMQFLWRYVDDLVGKGLE-MTVLGQFFFYSAL 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           T++P   P    + +     +     ELL +   G S   +I+P++ LA+LL    F+ +
Sbjct: 62  TLIPASLPLATLLASLITFGNFGERFELLAMKAAGISLFKIIRPLMILAVLLCGISFVFQ 121

Query: 119 NIIEPKCRSTIKQL 132
           N I PK  S +  L
Sbjct: 122 NNIGPKAFSKLTTL 135


>gi|254282226|ref|ZP_04957194.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
 gi|219678429|gb|EED34778.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
          Length = 389

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR---NTELLIIDNTGTSRITLIKPV 103
           +ILL +  + +P+   ++ P    +    +L S+ R   ++EL+++   G     L   +
Sbjct: 73  DILLPVMLFKLPSFFELILPLGLFI---GILLSLGRLYADSELVVLKACGVGPGKLATYL 129

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
           L  A+  S+ +      + P+  +  + +    + A     L E  F +     ++  ++
Sbjct: 130 LLPALAFSLVVGFLSLYLAPEGSARAQAMLDNPRSAEGLQQLSEGRFKKQRSGNFVSYAE 189

Query: 164 Y-NPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLD----RQAIILNDGEVHRKSPISK 216
             + +  +  IF+V+  +  T +  + YA +G + +D    R+ + L DG  +   P   
Sbjct: 190 TISDDGVMHNIFVVEKSEAGTARTRVTYADAGEVVVDPENGRRYLELRDGARYEGVPGQA 249

Query: 217 DISIMKFKSY 226
           D ++ KFK Y
Sbjct: 250 DYTVTKFKRY 259


>gi|193214339|ref|YP_001995538.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087816|gb|ACF13091.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 455

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 9/210 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMV 64
           YIL+     F+     +VF+ +++Q L R     V    E +N+++++    I  +  + 
Sbjct: 7   YILKSHIGPFVFGFATVVFV-FLMQFLARYLDRFVGKGLE-MNVIIELIVLQIAWMAVLA 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    + T     +M  ++E+  I  +G S + ++ P++    +L+  +    NI+ P+
Sbjct: 65  APMAVLISTLMTFGNMVNSSEMTAIRASGISLLRIMIPIIVAGAILTYLMERFNNIVLPE 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQT 183
                K L      A     LEEN+F  +     I   K +  ++ + G+ I D+R++  
Sbjct: 125 ANHQAKVLLMDISRAKPSFGLEENVFSDMIRGYTILARKTDEKSSNIAGVTIYDNRNSTR 184

Query: 184 HKIYYAQSG----SIDLDRQAIILNDGEVH 209
           + +  A SG    + DL    + L  GE+H
Sbjct: 185 NVVITADSGFFEFTSDLRNMIMTLKHGEMH 214


>gi|189347121|ref|YP_001943650.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
 gi|189341268|gb|ACD90671.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 25/225 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL---------QRINLVSSSTESLNILLK 51
           MK  + YIL+     F+++ + IVF+  V+Q L         + IN+   +     +++ 
Sbjct: 1   MKIIDRYILKSHIGPFILAFITIVFV-LVLQFLAGFSDRFLGKGINIADIA----ELVML 55

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
            S +++   +PM       M       +M  ++E+ +   +G S   L  PVL +A LLS
Sbjct: 56  QSAWMVVFAVPMAVLVAVIM----AYGTMTNSSEMTVFRASGLSLYRLAVPVLIVAALLS 111

Query: 112 IFLFISENIIEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNT 169
           + +    N++ P+     K L    A+   TF  L EN F    D   I + K +  +  
Sbjct: 112 LLVERFNNVVIPEANYRSKSLMMDIARAKPTFG-LTENAFSSFIDGYSIFVRKTDEASKE 170

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEVHR 210
           ++G+ + D R+ ++  +  A+ G I    D + +++   +GE+H+
Sbjct: 171 IRGVVLYDLRNPKSRTMMSAERGVIRFSPDNRFLVMTLFNGEIHQ 215


>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 10/183 (5%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPTVLPMVT 65
           Y+L+    +F +  L I     +I +LQ+++  +     S  +  +   YL P ++    
Sbjct: 8   YLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFPVIITQFF 67

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +    VL  ++RN E+L +   G S   ++ P+  + + +    F  +  I P+ 
Sbjct: 68  PAITLVAVGIVLVRLSRNKEILAMQVAGISLYRILLPIFVVTVFMGFASFGDQEWIVPRF 127

Query: 126 RSTIKQLSAKAQLALTF-SYLEENLFFRLDD-DLYIKISKY-NPNNTLQGIFIVDSRDTQ 182
              ++ +        TF S ++ NL    D+ +  I+I KY N    +  +FI+ SRD  
Sbjct: 128 AEKLEAMQQN-----TFDSDVQRNLLVHDDENNALIRIWKYSNKTQKMDSVFIL-SRDEN 181

Query: 183 THK 185
             K
Sbjct: 182 GKK 184


>gi|292572537|gb|ADE30452.1| Putative permease [Rickettsia prowazekii Rp22]
          Length = 377

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 26  IAWVIQILQRINLVSSSTESL---NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           I W+ QIL+ + L     + +   N+++ +   L+  +LP++T     +    +  ++  
Sbjct: 43  IVWITQILKLLYLFDKGIKVIDFFNLVVLVLPTLLFILLPIIT----VIAVLYIYNNLKV 98

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + I L  P L++A+ + +  +   + I P     +K      +     
Sbjct: 99  ERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISSTILPLSHINLKSRLNFIKNNYIS 158

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII 202
           S +EE  F ++  ++ + I K    N + GI I D+R+     + +A SG++++     I
Sbjct: 159 SMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRNADNPSVVFAGSGTLNIYGNNPI 218

Query: 203 --LNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             LN G + ++   + +++ + F S  ++ ++ +S T
Sbjct: 219 FELNKG-LRQEYDANGNLTQLTFDSLMIKLQNNSSLT 254


>gi|15604701|ref|NP_221219.1| hypothetical protein RP871 [Rickettsia prowazekii str. Madrid E]
 gi|6831726|sp|Q9ZC95|Y871_RICPR RecName: Full=Uncharacterized protein RP871
 gi|3861396|emb|CAA15295.1| unknown [Rickettsia prowazekii]
          Length = 360

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 104/217 (47%), Gaps = 10/217 (4%)

Query: 26  IAWVIQILQRINLVSSSTESL---NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           I W+ QIL+ + L     + +   N+++ +   L+  +LP++T     +    +  ++  
Sbjct: 26  IVWITQILKLLYLFDKGIKVIDFFNLVVLVLPTLLFILLPIIT----VIAVLYIYNNLKV 81

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + I L  P L++A+ + +  +   + I P     +K      +     
Sbjct: 82  ERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISSTILPLSHINLKSRLNFIKNNYIS 141

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII 202
           S +EE  F ++  ++ + I K    N + GI I D+R+     + +A SG++++     I
Sbjct: 142 SMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRNADNPSVVFAGSGTLNIYGNNPI 201

Query: 203 --LNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             LN G + ++   + +++ + F S  ++ ++ +S T
Sbjct: 202 FELNKG-LRQEYDANGNLTQLTFDSLMIKLQNNSSLT 237


>gi|294645356|ref|ZP_06723067.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|292639294|gb|EFF57601.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           IG  F+  CLFI    +++Q L R    LV    E ++++ +   Y   T++P+  P   
Sbjct: 4   IGTFFI--CLFI----FMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLAV 56

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +
Sbjct: 57  LLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKL 116

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIY 187
             L    +       + E +F+    D  +K++K N     L  + I   +D  +  +I 
Sbjct: 117 GTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARII 176

Query: 188 YAQSGSIDL--DRQAIILN 204
           YA SG +++  D+Q + L+
Sbjct: 177 YADSGRLEMTADKQHLWLH 195


>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
 gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
          Length = 782

 Score = 44.7 bits (104), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 49  LLKISGYL---IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L+ + GYL   IP ++  +TP C  +     +  +NR++EL  +  +G S   ++ P+  
Sbjct: 461 LVTVGGYLLNLIPYMIYSLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFV 520

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSA--KAQLALTF 142
           LA +L++ LF  +++  P+     + L +  K + A TF
Sbjct: 521 LAAVLAVGLFAFDDLYLPQANRRQEALRSEIKGKPAQTF 559


>gi|238028370|ref|YP_002912601.1| permease [Burkholderia glumae BGR1]
 gi|237877564|gb|ACR29897.1| Permease, putative [Burkholderia glumae BGR1]
          Length = 363

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLF----LAILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   R++E+++   +G S   LI+P+      + +L++ F F+      P      K 
Sbjct: 75  VLTRWYRDSEMVVWLASGVSLTRLIRPIGVFSTPIVLLIAFFAFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   +Q +F+  +   + + I  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESTATHRVFFIEKMSPDQARVQNVFVTTTEQGKVN-IVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G ++ ++     I+L +G  +   P   +  IM+F+ Y ++ +S    T     +   
Sbjct: 190 QTGRVETEKNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQPTTTSTST 249

Query: 247 LSFLLNPNPNN 257
           L  L +P   N
Sbjct: 250 LELLRDPTKEN 260


>gi|88859093|ref|ZP_01133734.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
 gi|88819319|gb|EAR29133.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
          Length = 354

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 115/264 (43%), Gaps = 17/264 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ R I ++   + L +V I+ +I+ ++++  V   +  +      + + IP  
Sbjct: 1   MKILDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKYVGRGSYDVMTAGLYTLFSIPAD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  N+EL+++   G SR  +I+ V+  A+++++ +      
Sbjct: 61  VVTFFPMATLIGGLTGLGALASNSELVVMQAAGLSRFEIIRSVMKTALVMALCVMAMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG-------- 172
             P+ +   K+L   A    +     + ++ + D D+++ I   + N  L G        
Sbjct: 121 GVPEAQKQAKELRTYAISGGSIFNARQGVWAK-DGDVFLNIDNVDDNGQLNGLKMYQFNK 179

Query: 173 ----IFIVDSRDTQTHKIYYAQSG--SIDLDRQAIIL-NDGEVHRKSPISKD-ISIMKFK 224
               + I +++   +H+  +   G  +I LD Q +   N  E    S ++ D + I+  K
Sbjct: 180 SLDLVAITNAQSAISHRDGWLLKGVKTIYLDEQEVRQENTKEQLYVSELTPDKLGIVSLK 239

Query: 225 SYTLQTESANSSTIVLKANDQNLS 248
           + +L           LK N+Q+ S
Sbjct: 240 AESLSFTGLIGYLDYLKKNEQDTS 263


>gi|260174364|ref|ZP_05760776.1| hypothetical protein BacD2_21081 [Bacteroides sp. D2]
          Length = 616

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           IG  F+  CLFI    +++Q L R    LV    E ++++ +   Y   T++P+  P   
Sbjct: 4   IGTFFI--CLFI----FMMQFLWRYVDELVGKGLE-MSVMAQFFFYSALTLVPVSLPLAV 56

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +
Sbjct: 57  LLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKL 116

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIY 187
             L    +       + E +F+    D  +K++K N     L  + I + +D  +   I 
Sbjct: 117 GTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHII 176

Query: 188 YAQSGSIDL--DRQAIILN 204
           YA SG +++  D+Q + L+
Sbjct: 177 YADSGRLEMTADKQHLWLH 195


>gi|310822424|ref|YP_003954782.1| hypothetical protein STAUR_5183 [Stigmatella aurantiaca DW4/3-1]
 gi|309395496|gb|ADO72955.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 123/292 (42%), Gaps = 25/292 (8%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+  + +V+Q L    ++  S  +L  + ++  YL P  L    P  F M     L  ++
Sbjct: 22  FMFLLLFVMQFLLGTEVLLGSAVTLTDIGRLILYLTPHFLVKALPIAFLMAILLGLGRLS 81

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + EL  +   G S + L+   + + +LL+  + +     +P   +++K+L  +      
Sbjct: 82  EDRELTALQALGISPVQLLLGPMAIGLLLAGLMALLAFTAQPWGLTSVKELVNEVIKKNV 141

Query: 142 FSYLEENLFFRLDDDLYI---KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
              ++  +F+    DL +   ++S+     T   + + D R+  +  +  AQ G + + R
Sbjct: 142 AGDVKSGVFYEDLSDLTLYAERVSREGGEWT--HVLLHDDREPSSPLLVLAQRGRVSM-R 198

Query: 199 QA-----IILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANSSTIVLKANDQNLS-- 248
           +      ++L +GEVHR +  + D S+++F+   +      S N  +   ++  + +S  
Sbjct: 199 EGDEALRLVLEEGEVHRATRSTADYSLLRFEQGEISVGLGGSMNRKSNRFRSQKEEMSPG 258

Query: 249 ----FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                      +  N RP L+       H RL   + P+ F L+    A  R
Sbjct: 259 ELIQAAEEAEKSGGNPRPFLM-----AIHMRLGNAVAPLSFALLGTPLAIGR 305


>gi|326335584|ref|ZP_08201771.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692350|gb|EGD34302.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 481

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 29/245 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   I+ ++    S+ I++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFVSSFLIIILIFIFQTIWLYIDELAGKGLSIFIIIKFVALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKGTRTLILFMLLLSIGVFFTFNN 120

Query: 121 IEP-------KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           ++P         R +IK  + +  LA++     + +F  +  D  IK+ K    N   G 
Sbjct: 121 LQPWSNRKAVALRDSIK--NKQPSLAIS-----QGIFNNV-QDFSIKVEKKTGEN---GE 169

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV--HRKSPISKDISIMKFKSYTLQTE 231
           F+    D   HK+     G   L R  I   +GE+  H+K      + I+K  +Y    +
Sbjct: 170 FL---HDIVIHKL-----GVDGLSRTVIKAKEGELSGHKKGSNVLQL-ILKDGTYYEDVK 220

Query: 232 SANSS 236
           SANS 
Sbjct: 221 SANSD 225


>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 365

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           I++++R + ++S+  S  ++ + S + +P +L  +TPFC  +       +++R  EL++ 
Sbjct: 37  IEMVRRTSGLASA--SALMVAETSLFRVPQLLEKLTPFCVLIGAMTCYLALSRKLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              G S    I P L  AI L +F     N +    R   K++ A+
Sbjct: 95  RAAGVSAWQFISPTLACAIALGVFATTVYNPLSSNLRELSKRMEAE 140


>gi|332969352|gb|EGK08377.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
          Length = 370

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 49/250 (19%), Positives = 109/250 (43%), Gaps = 28/250 (11%)

Query: 34  QRINLV---SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q +N++   +S + +++ +  + G+ +  + P++      +    VLT   R++E+ I  
Sbjct: 30  QGVNMLGRAASGSVAIDAVGALIGFWVLGMTPLLLVLTAYISILTVLTRYWRDSEMAIWL 89

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
           ++G      IKPVL  A+ L++ +   +  + P      ++     +     S +E+  F
Sbjct: 90  SSGLGLKQWIKPVLTFALPLAMLVAAMQLFVLPNAELRSREYGELLKQKQNLSLIEQGTF 149

Query: 151 FRL---DDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLD---RQAIIL 203
             L   ++ +Y  + +++     +  +FI +  +     + +AQSG + L+   R+ ++L
Sbjct: 150 AELGKQNNRVYF-VEQFDAEVGEMSRLFIREVDEKGRDSVVFAQSGHMKLEADNRRVLVL 208

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESA--------NSSTIVLKANDQNLSFLLNPNP 255
            +G  +  +    D   + F+   L   +A        +  TI      QNL        
Sbjct: 209 QNGYRYTGNAGQGDFEQVSFQELQLVINTAPKLIEPINHRRTI----PSQNLI-----GS 259

Query: 256 NNPNYRPELL 265
           +NP Y+ EL+
Sbjct: 260 DNPQYQAELM 269


>gi|114562104|ref|YP_749617.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333397|gb|ABI70779.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 352

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 1/182 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  +  +  L +  ++ +I+ + ++ LV     ++        +L+P  
Sbjct: 1   MRILDLYIARMIVSTSSLCLLILTGLSGIIKWVDQLRLVGRGAYTMLDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ + +  +  AI L I +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGMSRLQITQSAMKTAIPLMIMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    + K+L A      +       ++ + D DL++ I +    NTL  I + +  D
Sbjct: 121 GAPIAEKSAKELQATKISGGSLIKSHRGIWAK-DGDLFVNIGEVQDVNTLSNISLYEFND 179

Query: 181 TQ 182
            Q
Sbjct: 180 QQ 181


>gi|253572213|ref|ZP_04849617.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387973|ref|ZP_06997521.1| permease [Bacteroides sp. 1_1_14]
 gi|251838393|gb|EES66480.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259239|gb|EFI02115.1| permease [Bacteroides sp. 1_1_14]
          Length = 632

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 8/201 (3%)

Query: 12  IGRSFLM---SCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           I +SFLM      FI    +++Q L R ++ +      ++++ +   Y   T++P+  P 
Sbjct: 11  IVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPL 70

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++
Sbjct: 71  AILLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQT 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHK 185
            +  L    +       + E +F+    D  +KI+K N     +  + I + +D  +   
Sbjct: 131 KLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAH 190

Query: 186 IYYAQSGSIDL--DRQAIILN 204
           I YA SG +++  D+Q + L+
Sbjct: 191 IIYADSGRMEMTADKQHLWLH 211


>gi|218768538|ref|YP_002343050.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|121052546|emb|CAM08886.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|308389704|gb|ADO32024.1| hypothetical protein NMBB_1799 [Neisseria meningitidis alpha710]
 gi|319410787|emb|CBY91172.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
 gi|325128631|gb|EGC51500.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
 gi|325130631|gb|EGC53374.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           OX99.30304]
 gi|325144870|gb|EGC67158.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240013]
 gi|325201754|gb|ADY97208.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240149]
 gi|325204534|gb|ADY99987.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240355]
 gi|325205695|gb|ADZ01148.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M04-240196]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    +L  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGGFNSLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|296122759|ref|YP_003630537.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
 gi|296015099|gb|ADG68338.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 18/188 (9%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           +L+I  ++IPT+LP   P    +    V   ++ + E++     G   I+++ P   L +
Sbjct: 47  ILQILPFIIPTLLPFTIPTALLLTVCVVYGRLSGDQEIIAAKAAGIHIISVLWPAFLLGV 106

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
           +LSIF  +  + + P     I++         T +   E++FF    D+    ++ N  +
Sbjct: 107 VLSIFTLVITDQMIPWSMKRIQR---------TIAMAVEDIFF----DVLKAQNQLNLRD 153

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYT 227
               I ++D RD    +  Y  +       + + +   E   +  + +D+ +M+FK  Y 
Sbjct: 154 QGLSITVMDVRD----RTLYMPTFRYMRGNKPVTVQAKEARLRFDLDRDVVVMEFKDGYI 209

Query: 228 LQTESANS 235
              + AN+
Sbjct: 210 SLPDDANT 217


>gi|325136763|gb|EGC59363.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
 gi|325208502|gb|ADZ03954.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           NZ-05/33]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 105/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 37  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 95

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 96  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 155

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    +L  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 156 YAEILKQKQELSLVEAGGFNSLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 214

Query: 188 YAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G  S++ +++ + L  G  +  +P   D + + F+   L
Sbjct: 215 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 257


>gi|167621692|ref|YP_001672200.1| hypothetical protein Caul_5426 [Caulobacter sp. K31]
 gi|167351815|gb|ABZ74541.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 4/169 (2%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           L+P  L +  P  F +    V+T+++ ++E+  +   G S   ++ P + + +LL +F  
Sbjct: 5   LLPHYLGLALPVAFFIALFIVITTLSDSSEIDALLAGGRSLTRIVAPFVVIGVLLGLFSV 64

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           I    ++P  R   + +   A  A     L    F    + L            L GIFI
Sbjct: 65  IVFGYLQPYSRYAFRSVMHAAITAGWNGRLPGRAFVEDGEQLITADESVAAGQALMGIFI 124

Query: 176 VDSRDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISI 220
                 +  ++  A S S+    D ++ A++L DG    +    +D+++
Sbjct: 125 KRPDANKREEVIAASSASLVAEPDGEKVALMLTDGRRTAQDGQGEDLAL 173


>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
 gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 85/178 (47%), Gaps = 8/178 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R   R FL+  L  + +  ++   +++ ++ + + +   +L    + IP +
Sbjct: 1   MTILDRYISREFLRFFLLVILSFLSLFLIVDFFEKLKMLINYSATFYQILAFFFFRIPMM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + +     S+++N+E++ +  +G S      P+L ++ L+++F F+   +
Sbjct: 61  LSLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSEL 120

Query: 121 IEPKCRSTIKQLS----AKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGI 173
           I P      + +      K ++   F   +E +++R    +Y     ++P +NTL+GI
Sbjct: 121 ITPYANEKAEYIRKVEIEKKEIQGIFK--QEQIWYRGTRGIY-NFKLFDPEHNTLRGI 175


>gi|34763639|ref|ZP_00144568.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294785395|ref|ZP_06750683.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
 gi|27886692|gb|EAA23836.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294487109|gb|EFG34471.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF +F+ E+
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           II P+    +K + AK         L+E  F    D+  I + K + +   + I
Sbjct: 121 II-PRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNI 173


>gi|237741965|ref|ZP_04572446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845305|ref|ZP_05550763.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|229429613|gb|EEO39825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718864|gb|EEU32419.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF +F+ E+
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           II P+    +K + AK         L+E  F    D+  I + K + +   + I
Sbjct: 121 II-PRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNI 173


>gi|325134627|gb|EGC57267.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
          Length = 371

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 104/223 (46%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    +L  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAGGFNSLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G+  L  +++ + L  G  +  +P   D + + F+   L
Sbjct: 190 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 232


>gi|189220202|ref|YP_001940842.1| permease [Methylacidiphilum infernorum V4]
 gi|189187060|gb|ACD84245.1| Predicted permease [Methylacidiphilum infernorum V4]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 54/112 (48%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +L+ ++   L I +K+   LIP VL    P+   +    +   M+++ EL  + + G S 
Sbjct: 71  DLLVNNEVPLWISVKLLVSLIPFVLTFTLPWGLLVAVILLFGKMSQDRELTALKSAGISL 130

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
             ++ PV++ A+L S+  F     I PK R   K++ +   L    S+ + N
Sbjct: 131 GAIMAPVIWFALLYSVLSFAINAYIGPKSRHAFKEIFSDVMLHNPLSFFKSN 182


>gi|114562103|ref|YP_749616.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333396|gb|ABI70778.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 38/361 (10%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           + L ++   ++ Q   R+   +S  E   ++++ + G  +P +  +V P  F +      
Sbjct: 17  AVLLVLLTIFISQQFVRVLADASDGEFPASLVMTLLGLNLPQLTVLVLPLSFFLAILLAH 76

Query: 78  TSMNRNTELLIIDNTGTS-----RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
             M    E++++   G S     R+TL+     L     + +++      P       Q+
Sbjct: 77  GRMYAENEMVVLHGVGVSEWYVTRVTLLLAFANLLFTAYLSVYVG-----PWAEERQNQV 131

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDSRDTQTH----KIY 187
             KAQ     + L +  F    +   +  + K N +NTL  +F+    D +       I 
Sbjct: 132 LEKAQSEAGLAALTQGRFQASPNGRAVLFVEKINKDNTLDKVFVAQLPDPEDENGLTNIV 191

Query: 188 YAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            A  G +   ++  Q + L  G  ++ SP S ++ +++F  Y ++ +         K + 
Sbjct: 192 VANKGRVIEDNIGSQQLQLEKGFRYQGSPKSLELQVIEFGGYKMEIKEQEVDERRRKLSA 251

Query: 245 QNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRALVRQR 302
             +  LL+ P P              +EF  RL     P+   L++++A    R  VRQ 
Sbjct: 252 MPIDELLDTPGPEAA-----------AEFQWRLA---IPIAIPLLTLIAVPLARVNVRQG 297

Query: 303 K--KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           K  K+ P  +     FG+       +   E  P Y+ + ++  F +    LL+IK++ T 
Sbjct: 298 KFAKMGPAILLYLGYFGLMIAGRKALQD-EVVPQYLGMWWIHGFALLLGLLLLIKERPTG 356

Query: 361 I 361
           +
Sbjct: 357 M 357


>gi|218778207|ref|YP_002429525.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759591|gb|ACL02057.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 62/287 (21%), Positives = 106/287 (36%), Gaps = 17/287 (5%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F ++ L    I  + ++LQ  + V +    L  ++ +  Y +P  L  V P    M    
Sbjct: 19  FGVTLLVFALIFLMTRMLQLTDYVVNFRVGLGHVMMLLMYSMPFFLIFVIPMSTMMAVLL 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               M+ + E+  +   G S  +L+ PVL      ++       I  P  R   K+L   
Sbjct: 79  TFLRMSSDNEITALKAAGWSLYSLLPPVLAFCTAAALLTASMSFIGLPWGRMAAKELLID 138

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
                    L+E  F R   ++ + +   +  + TL  +FI D RD Q      A +G I
Sbjct: 139 VARQNVEIGLKERSFERTFKNVVLYVGSVDVESRTLHHVFIEDRRDKQLSSTIMASTGRI 198

Query: 195 ----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN---- 246
                 D   + LNDG + R       +  + F SY        +        D+     
Sbjct: 199 IPSDGDDIWQLRLNDGVIVRADRKKSSMFTVNFDSYDFNLNLGTALGARDGEKDEEEMYF 258

Query: 247 ---LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              L+F+   N  +  Y   LLE      HK+ +     ++ GL ++
Sbjct: 259 KELLTFVKRYNKKDDRYYLALLEV-----HKKFSIPFSCIVLGLAAV 300


>gi|260642684|ref|ZP_05416897.2| putative permease [Bacteroides finegoldii DSM 17565]
 gi|260621031|gb|EEX43902.1| putative permease [Bacteroides finegoldii DSM 17565]
          Length = 632

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 18/215 (8%)

Query: 1   MKSFELYILRC-----IGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKIS 53
           +K  +++I++      IG  F+  CLFI    +++Q L R    LV    E ++++ +  
Sbjct: 4   IKKLDIFIVKSFFMLFIGTFFI--CLFI----FMMQFLWRYVDELVGKGLE-MSVMAQFF 56

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            Y   T++P+  P    + +     +     ELL +   G S + +++P++F    L   
Sbjct: 57  FYSALTLVPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGV 116

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQG 172
            F  +N++ P  ++ +  L    +       + E +F+    D  +KI+K +     L  
Sbjct: 117 SFYFQNVVGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKDRKTGMLYD 176

Query: 173 IFIVDSRDT-QTHKIYYAQSGSIDL--DRQAIILN 204
           + I + +D  +   I YA SG +++  D+Q + L+
Sbjct: 177 VLIYNLKDGFENAHIIYADSGRLEMTADKQHLWLH 211


>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 48  ILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           ++++ S Y +P +L  + PFC  +       +++R  EL++    G S    + P L+ A
Sbjct: 51  LIVQTSVYRVPQLLERLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSA 110

Query: 108 ILLSIFLFISENIIEPKCRSTIKQLSAK 135
           + L +F  +  N +    +   KQ+ A+
Sbjct: 111 LALGVFATVVFNPMSANMQERAKQMEAE 138


>gi|257466753|ref|ZP_05631064.1| hypothetical protein FgonA2_04885 [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 361

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  ++Y+ +   + F   L S L I  ++ V ++L+ +N    S   + + +   G L+
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFI---GNLL 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P ++  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F  
Sbjct: 58  PGIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYI----KISKYNPNNTLQG 172
            + + P      ++L  K  +        +EN FFR  +  Y+    KI++      +  
Sbjct: 118 NDRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINR--ETGIMDH 175

Query: 173 IFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVH 209
           + ++D  +   +  ++  A+ G  D  R+  +  D  ++
Sbjct: 176 VEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIY 214


>gi|120599782|ref|YP_964356.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|120559875|gb|ABM25802.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 156/362 (43%), Gaps = 34/362 (9%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVT 65
           Y++R + ++  ++ L ++   ++ Q   RI   +S  E   ++++ + G  IP ++ +V 
Sbjct: 6   YLIREVFKA-QIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVD----SRD 180
                Q+  KAQ     + L +  F    +   +  + +   +N L+ +F+      S +
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPEPSDE 184

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           T    +  A++G +   ++  Q + LN+G  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KR 296
              K +   ++ LL         + E  E   +EFH RL     P+   +++++A    R
Sbjct: 245 RRRKLSALTVTDLL---------KVESAEAV-AEFHWRLA---IPLAIPIMTLIAVPLAR 291

Query: 297 ALVRQRK--KIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFC-ISSIF 350
             VRQ K  K+ P   ++ +  G F G      K  Q+   P Y+ + ++ L   I  IF
Sbjct: 292 VNVRQGKFAKMLP---AVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIF 347

Query: 351 LL 352
           LL
Sbjct: 348 LL 349


>gi|146292282|ref|YP_001182706.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|145563972|gb|ABP74907.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|319425582|gb|ADV53656.1| inner membrane component of lipopolysaccharide transporter, LptF
           [Shewanella putrefaciens 200]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 156/362 (43%), Gaps = 34/362 (9%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVT 65
           Y++R + ++  ++ L ++   ++ Q   RI   +S  E   ++++ + G  IP ++ +V 
Sbjct: 6   YLIREVFKA-QIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVD----SRD 180
                Q+  KAQ     + L +  F    +   +  + +   +N L+ +F+      S +
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDPSDE 184

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           T    +  A++G +   ++  Q + LN+G  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KR 296
              K +   ++ LL         + E  E   +EFH RL     P+   +++++A    R
Sbjct: 245 RRRKLSALTVTDLL---------KVESAEAV-AEFHWRLA---IPLAIPIMTLIAVPLAR 291

Query: 297 ALVRQRK--KIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFC-ISSIF 350
             VRQ K  K+ P   ++ +  G F G      K  Q+   P Y+ + ++ L   I  IF
Sbjct: 292 VNVRQGKFAKMLP---AVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIF 347

Query: 351 LL 352
           LL
Sbjct: 348 LL 349


>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
          Length = 1063

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 6/232 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YIL+ +   FL+    I  I          +L+       +++ ++  Y +P V
Sbjct: 3   VKLMDKYILKEVSYPFLLGVFIITIILVGSYFFHLADLIIVKNVPFSLVFRLLLYRLPGV 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISEN 119
           +    P      T   +  +NR  E+  +   G S   L+ P+  L +L+S F F ++EN
Sbjct: 63  MVETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTFLLNEN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD- 177
           I+ P      + +  +  L       E  +FF+        +S YN  +  L+ I I   
Sbjct: 123 IV-PWTNHQAQNIIRQTILKDAMPDPESEVFFQGPRGRLFYVSSYNQSSGELKNIVIYQL 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           + + +  ++  A  G +  +  A +LN G +H+ +   + I   KF    ++
Sbjct: 182 ASEAEFPEVITAVDGLV--EDNAWLLNTGIIHQYNQGGEIILESKFNQMEIE 231


>gi|257452882|ref|ZP_05618181.1| hypothetical protein F3_07434 [Fusobacterium sp. 3_1_5R]
          Length = 361

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  ++Y+ +   + F   L S L I  ++ V ++L+ +N    S   + + +   G L+
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFI---GNLL 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P ++  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F  
Sbjct: 58  PGIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYI----KISKYNPNNTLQG 172
            + + P      ++L  K  +        +EN FFR  +  Y+    KI++      +  
Sbjct: 118 NDRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINR--ETGIMDH 175

Query: 173 IFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVH 209
           + ++D  +   +  ++  A+ G  D  R+  +  D  ++
Sbjct: 176 VEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIY 214


>gi|161870424|ref|YP_001599597.1| hypothetical protein NMCC_1472 [Neisseria meningitidis 053442]
 gi|161595977|gb|ABX73637.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 432

 Score = 43.1 bits (100), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 105/223 (47%), Gaps = 11/223 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +   +++ +L + G+ +  + P++      +
Sbjct: 73  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTPLLLVLTAFI 131

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 132 STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVIPWAELRSRE 191

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +    +L  R +  +Y   +    +  ++ +F+ +        I 
Sbjct: 192 YAEILKQKQELSLVEAGGFNSLGKR-NGRVYFVETFDTESGIMKNLFLREQDKNGGDNII 250

Query: 188 YAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +A+ G  S++ +++ + L  G  +  +P   D + + F+   L
Sbjct: 251 FAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNL 293


>gi|326388616|ref|ZP_08210209.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206867|gb|EGD57691.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
          Length = 420

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 18  MSCLFIVFIAWVI--QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           M  +F++  + ++  ++L+  + V++    + I+ K+   L+P    +  P    +    
Sbjct: 19  MLSVFVIAASLLVLDKMLKLFDFVATQGGPVGIVFKMLANLMPEYASLAIPLGLMLGILL 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               +  ++EL ++   G S   L++    LA +L+    +  + ++P  R   ++L  +
Sbjct: 79  AFRKLATSSELDVMRAVGLSYTRLLRVPYILAFVLAALNLLIVSYVQPLSRYYYEELQFE 138

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFI-VDSRDTQTHKIYYAQSGS 193
            +     + ++   F  L D   +++ S  +    LQGIF  V  +D Q   +  A+ G 
Sbjct: 139 LRSGALGASIKVGEFNSLQDRTALRVESSRDDGRQLQGIFARVVGKDGQI-LVISAREGQ 197

Query: 194 IDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYTL 228
              +R+      + L DG++ ++SP  ++  ++ F S+ L
Sbjct: 198 FFANRENPDTVILRLTDGQIVQESPTIRNPRVLTFASHDL 237


>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 365

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 5/130 (3%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           I++++R + ++S+  S  ++ + S + +P +L  +TPFC  +       +++R  EL++ 
Sbjct: 37  IEMVRRTSGLASA--SAIMVAETSLFRVPQLLEKLTPFCVLIGAMTCYLALSRRLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G S    I P L  A++L +    + N +    R   K++ A+   +++   L+E  
Sbjct: 95  RAAGISAWQFISPALACALVLGVLATTAYNPMSANLRELSKKMEAELFGSVSGGGLQEAS 154

Query: 150 FF---RLDDD 156
            F   ++ DD
Sbjct: 155 GFWINQVTDD 164


>gi|317059424|ref|ZP_07923909.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685100|gb|EFS21935.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  ++Y+ +   + F   L S L I  ++ V ++L+ +N    S   + + +   G L+
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFI---GNLL 58

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P ++  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F  
Sbjct: 59  PGIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYL 118

Query: 118 ENIIEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYI----KISKYNPNNTLQG 172
            + + P      ++L  K  +        +EN FFR  +  Y+    KI++      +  
Sbjct: 119 NDRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINR--ETGIMDH 176

Query: 173 IFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVH 209
           + ++D  +   +  ++  A+ G  D  R+  +  D  ++
Sbjct: 177 VEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIY 215


>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 361

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           + +VF+ + I +L+R   ++ S     ++ + S Y +P +L  + PFC  +       ++
Sbjct: 27  VLLVFVDY-IDLLRRAGGLAVSA---LVIAQASFYRVPQLLERLMPFCILIGGMTCYLAL 82

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           +R+ EL+I    G S    + P L+ A+ L +F     N +    +   KQ+ A+
Sbjct: 83  SRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFNPMSAYMQERAKQMEAE 137


>gi|315917902|ref|ZP_07914142.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691777|gb|EFS28612.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 362

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 43/219 (19%), Positives = 97/219 (44%), Gaps = 15/219 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  ++Y+ +   + F   L S L I  ++ V ++L+ +N    S   + + +   G L+
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFI---GNLL 58

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P ++  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F  
Sbjct: 59  PGIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYL 118

Query: 118 ENIIEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYI----KISKYNPNNTLQG 172
            + + P      ++L  K  +        +EN FFR  +  Y+    KI++      +  
Sbjct: 119 NDRVYPGSVVRNRELRGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINR--ETGIMDH 176

Query: 173 IFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVH 209
           + ++D  +   +  ++  A+ G  D  R+  +  D  ++
Sbjct: 177 VEVLDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIY 215


>gi|294637821|ref|ZP_06716093.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
 gi|291089020|gb|EFE21581.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
          Length = 366

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 45/236 (19%), Positives = 91/236 (38%), Gaps = 15/236 (6%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N++  + G  IP +  ++ P    +     L  +   +E+ ++   G  +  LIK  + L
Sbjct: 46  NLVFSLLGLGIPEMAQLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKSVLIKAAMVL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A         +   + P       ++ A+A+     + L E  F    D  Y+       
Sbjct: 106 AFFTGALALANAFWLSPWSSLHSDEVMAEAKANPGLASLAEGQFQPSQDGNYVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIM 221
           +     +F+   R + + +  +  A SG    +    Q ++L+ G  +  + + +D  I 
Sbjct: 166 DKKFHDVFLAQLRPSGSQRPSVVVADSGHLVEMKDGGQKVVLDSGTRYEGTAMLRDFRIT 225

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            F  Y+      + ST++   N    S     + + P        ++R+EFH RLT
Sbjct: 226 DFVDYSALI--GHKSTMLDPNNADQASMSALWHSDEP--------SFRAEFHWRLT 271


>gi|224825295|ref|ZP_03698400.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
 gi|224602216|gb|EEG08394.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
          Length = 366

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 10/222 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESL---NILLKISGYLIPTVLPMVTPFCFAM 71
           +F    +F+V +A ++   Q INL+  + E       +  + G+    + P++      +
Sbjct: 12  TFTAVSVFVVLLA-ILVTTQTINLLGRAAEGRIANEAVAALIGFWTLGLFPLLLILTVFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
               VLT + R+ E+ +   +G S    +KPVL  A+ L+I + IS  +I P       +
Sbjct: 71  SVLVVLTRLWRDHEMAVWLASGVSLKDWVKPVLRFAVPLAILVGISSLLIGPWAEQRSHE 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
            +   +     S +   +F        +Y   +    N +   IF+ D    +   I +A
Sbjct: 131 YAEILKQHEDVSAISPGIFKESHSSRRVYFVENFSGKNGSAANIFMQDMSKGKVASI-FA 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTL 228
           +SG I  + Q    ++L +G  +  +P   D  + +F  Y++
Sbjct: 190 KSGRIVTNEQGERLLLLENGRRYVGNPGEADYEVAEFARYSV 231


>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
 gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + + +  V+ S   L   L++ G  +P  L +  P    M T    ++++ N+EL+ + +
Sbjct: 59  VFELVRRVAESGLPLLTALQVLGLRMPGFLVLSFPMATLMATLLAYSTLSSNSELIALRS 118

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRSTIKQLSAKAQLALTFSYLEE 147
            G S   ++ P L +A+L+S+  F+  ++I P    +  +T+ Q   KA  A   S +  
Sbjct: 119 VGVSTWRMVLPALIVAVLMSLLTFVFNDLIVPSANLEATNTLNQALGKAIAAEKGSNIIY 178

Query: 148 NLFFR----LDD---DLYIK---ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
           + F R    LD+   + Y+     S+   +  ++ + ++D       +I  A++G+ + +
Sbjct: 179 SRFSRRPSKLDESGSERYLSQLFYSRQFKDGEMEEVTVLDFSRPSGTQILKAKTGTWNDE 238

Query: 198 RQAIILNDGEV 208
                  DG++
Sbjct: 239 AGMWEFRDGQI 249


>gi|268315816|ref|YP_003289535.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
 gi|262333350|gb|ACY47147.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 40/201 (19%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            +  + +F++ + ++I+ L   +LV      L ++L++  Y +  ++ +  P    +   
Sbjct: 18  GWFGTLMFLLIMQFLIKYLP--DLVGKGL-PLGVILELISYNLAYMVVLAVPMATLIAMI 74

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
                +  +    +I + G S   L  P+L + ++L+  +    N+I P+     + L  
Sbjct: 75  MTFGRLAESNAYQVIKSAGISLPQLTWPLLIVGLVLTGAMMYFNNLILPEANHRARNLWI 134

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSGS 193
             Q       L+  +F+   +   I +   +P  ++L+ + I D R++  H +  AQ G 
Sbjct: 135 DIQRKKPGFQLQPGVFYDGIEGYSILVQHRDPETDSLRDVTIYDYRNSGEHAVLKAQRGL 194

Query: 194 IDLDRQA----IILNDGEVHR 210
           +          +IL DGE HR
Sbjct: 195 LQPIAGGRFIDLILEDGEFHR 215


>gi|313674336|ref|YP_004052332.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941034|gb|ADR20224.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 549

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 27/125 (21%), Positives = 54/125 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  ILR     FL++   +VFI     +L+  +         ++  ++  Y    +
Sbjct: 1   MKKIDKLILRSFIGPFLITFFVVVFILLTQYMLKYFDDFVGKDLGFSVFAELIAYFSINM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            P+  P    + +     ++  + EL  I + G S + +++P+    + LS  ++ S N 
Sbjct: 61  TPIAFPLAVLLSSLMTFGNLGEHFELTAIKSAGISLVRVLRPLFVFVVCLSAVVYYSNNF 120

Query: 121 IEPKC 125
           I PK 
Sbjct: 121 IVPKA 125


>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
          Length = 363

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           L +V + ++  + +   L S+S     ++ + S + +P +L  +TPFC  +       ++
Sbjct: 27  LLLVLVDYIEMVRKTSGLASASA---IMVAETSLFRVPQLLEKLTPFCMLIGAMTCYLAL 83

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           +R  EL++    G S    I P L  A+L+ +   ++ N +    R   K++ A+
Sbjct: 84  SRRLELVVARAAGVSAWQFISPALGSALLIGVIATVAYNPMSANLRELSKRMEAE 138


>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 363

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 24/273 (8%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           +++L+R     +   S  ++ ++S Y  P V   V PF     +   L  ++R  EL++ 
Sbjct: 37  VELLRRAG--EAQGASAGLMAQLSLYRTPAVAEGVLPFAVLFGSMAALLQLSRKLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G S    ++P LF+A+ L        N +    +    ++ AK     T +   ++L
Sbjct: 95  RAAGISAWQFLQPGLFVALALGALAVGVYNPVSAMLKQRSTEIEAKIFAKSTKASSGKDL 154

Query: 150 FFR---LDDDLYIKI-SKYNPNNTLQG--IFIVDSRDTQTHKIYYAQSGSIDLDRQAIIL 203
           + R   LD +  ++  +      TL G  +F  D+      ++  A++          +L
Sbjct: 155 WIRQKGLDGEAILRAETAVEGTTTLAGVSVFTFDAAGKFAEQLVAARA----------ML 204

Query: 204 NDG--EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR 261
           +DG  E+     ++ D     F +Y + +              +++ F   P       R
Sbjct: 205 HDGYWELSDVRVLTPDAPPESFDTYLIASNLDPGQVRQRFTPPESVPFWQLPTTIARTER 264

Query: 262 PELLET-YRSEFHKRLTQWLFPVIFGLISIVAA 293
             L  T YR ++      W  PV+F  + IVAA
Sbjct: 265 AGLDATRYRLQYD---VLWARPVLFVAMVIVAA 294


>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 366

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/152 (19%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LYI R  G++FL+       + ++I+++++I  +  +  +L+    ++   +P+ L 
Sbjct: 2   TLSLYIARRFGQAFLIVAGAFWGVLFLIEMVEQIRRLDPARGALSDAAHLAALSVPSTLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        + R++EL++I   G S + ++   + +A+L+ + L    N I 
Sbjct: 62  TIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPVTVALLIGVLLVAVGNPIV 121

Query: 123 PKCRSTIKQLSA--KAQLALTFSYLEENLFFR 152
                  +++    +A+   T S   E L+ R
Sbjct: 122 SATSKRAEEIEGQLRAEGRQTVSIGREGLWMR 153


>gi|326561253|gb|EGE11612.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 437

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 26/227 (11%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+V I    ++++   + +    ++ +L ++ GY  P  L ++ P  F +    V   + 
Sbjct: 76  FLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLY 135

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + E+ +++ +G SR  + + ++ L ++L         + +P        +  +  +A  
Sbjct: 136 TDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQV 195

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--------DSRDTQTHK---IYYA 189
           F  +    F    DD ++ + +   N   L+ + I+        D +  Q+H+   I +A
Sbjct: 196 FDLIRPQEFIS-SDDYHLYVGEMGANREFLKDVIIIQMHTAEPSDIQSRQSHQRDSIIFA 254

Query: 190 QS--------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +S        G I LD     L  G  +   P S+  S + F+ Y +
Sbjct: 255 KSATHVETGNGQIQLD-----LQQGRRYEVDPTSRQYSQIGFERYRM 296


>gi|72382010|ref|YP_291365.1| putative permease [Prochlorococcus marinus str. NATL2A]
 gi|72001860|gb|AAZ57662.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. NATL2A]
          Length = 395

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 18/208 (8%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P+ + +  P    + T     S+N N+E+  + + G S   LI P L L+I +S   FI
Sbjct: 79  LPSFVVISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRLILPGLILSIFMSYMTFI 138

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNT------ 169
             N I P      + + A + L  +F+  + E++ F    ++    S Y  N        
Sbjct: 139 FNNNIVPSTNKNAEIILANS-LGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYA 197

Query: 170 -------LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
                  +  + ++D       ++  A+ G  + D+      +G++   SP   +    K
Sbjct: 198 WKFIDGQMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRT-K 256

Query: 223 FKS--YTLQTESANSSTIVLKANDQNLS 248
           F S  Y L TE  N + +   AND NL 
Sbjct: 257 FLSFLYPLGTELTNIAQLPKDANDMNLG 284


>gi|332284928|ref|YP_004416839.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
 gi|330428881|gb|AEC20215.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
          Length = 371

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT 98
            ++ T   N++  ++ +   T LP++      +     +T   R +E+++   +G S   
Sbjct: 39  AANGTIGANVVFGLATFSSITALPVILSVSLFIAVLTTVTRNFRESEMVVWFASGLSLKD 98

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
            I+PVL  A+ ++I + +   +  P     I +   + +     S +    F   +D   
Sbjct: 99  WIRPVLRCAVPVAIIIAVLTLVASPWAYRQISEYRQRFEQRSDLSKVTAGQFIETEDGAR 158

Query: 159 IKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSP 213
           +  ++  PN   + +  V +R    +   +  A+S  I  +      ++L DG  +   P
Sbjct: 159 VFFAE-EPNEPGEEMGNVIARVVTPEWLSVVTAESARIQTEENGDRFLVLTDGHRYDLKP 217

Query: 214 ISKDISIMKFKSYTLQTESANSST 237
              D  +M+F SY  + ES  S +
Sbjct: 218 DMPDFRLMEFDSYGFRLESNASES 241


>gi|330994316|ref|ZP_08318244.1| putative permease [Gluconacetobacter sp. SXCC-1]
 gi|329758783|gb|EGG75299.1| putative permease [Gluconacetobacter sp. SXCC-1]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 78/190 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+LR +   F ++   ++    + ++L   NL++++  S+     +   LIP  L 
Sbjct: 18  TMDRYLLRQVVPPFSIALGVVMAALLLERLLVLFNLLAANGSSMKTFFALLSDLIPHYLG 77

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +   +V+  M+ N E+  +  +G S   + +P +    +     F     I+
Sbjct: 78  LALPAAMCVSVFSVIRRMSANHEIDALMASGVSIFRICQPFVLTGAIFGFLAFSLYGFIQ 137

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R   +     A  A    +L+  +F   DD +    +  +  + +  +FI D  D  
Sbjct: 138 PYARYDYRSAFYFASHAGWTPHLQSKMFALSDDIVLTAENVDHAGSRMWNVFIRDGTDKA 197

Query: 183 THKIYYAQSG 192
             +   AQ G
Sbjct: 198 HVRFISAQKG 207


>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 14/139 (10%)

Query: 8   ILRCIGR----SFLMSCLFIVFIAWV-------IQILQRINLVSSSTESLNILLKISGYL 56
           +L  +GR     F+ S L + F  +V       I +L+R   +S S     ++ + S + 
Sbjct: 2   VLNTLGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGLSVSA---FVIAQASFFR 58

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + PFC  +       +++R  EL+I    G S    I P L+ A+ L +F   
Sbjct: 59  VPQLLERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASA 118

Query: 117 SENIIEPKCRSTIKQLSAK 135
             N +    +   KQ+ A+
Sbjct: 119 VFNPMSAYMQERAKQMEAE 137


>gi|255009764|ref|ZP_05281890.1| putative permease [Bacteroides fragilis 3_1_12]
 gi|313147551|ref|ZP_07809744.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136318|gb|EFR53678.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++L  +G  F+  CLFI  + ++ + +    LV    E +++L +   Y   +++PM  P
Sbjct: 15  FLLLFVGTFFI--CLFIFMMQFLWKYVDE--LVGKGLE-MSVLAQFFFYSALSLVPMSLP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +     +     ELL +   G S + +++P++ L   +    F  +N+I P+ +
Sbjct: 70  LAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPRAQ 129

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTH 184
           + +  L    +       + E +F+   D   +K+ + +     L  + I D S +    
Sbjct: 130 AKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSNNFDNA 189

Query: 185 KIYYAQSGSIDL--DRQAIILN 204
           +I  A SG +++  D+Q + L+
Sbjct: 190 RIIVADSGRLEMTADKQHLYLH 211


>gi|254527024|ref|ZP_05139076.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538448|gb|EEE40901.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
          Length = 401

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           LK+  + +P+ L +  P    + T      ++ N+ELL + + G     +I P + L+I 
Sbjct: 73  LKVLFFSLPSFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIF 132

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE--ENLFF-RLDDDLYIKISKYNP 166
           ++   F   + + PK  + + + + +A +  +FS  E  EN+ F R    +     K   
Sbjct: 133 MTGLTFYFNDNLVPKS-NKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTK 191

Query: 167 NNT---------------LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
           NN+               ++ + ++D       +I  A S   D    + I + G +   
Sbjct: 192 NNSKLTHIFYAQWYKNKLMENVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSI 251

Query: 212 SPISKDISIMKFKSYT 227
           +P  +  +I KFK YT
Sbjct: 252 TPSGQTTNI-KFKEYT 266


>gi|254303140|ref|ZP_04970498.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323332|gb|EDK88582.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 2/174 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF +F+ E+
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           II P+    +K + AK         L+E  F    D+  I + + + +   + I
Sbjct: 121 II-PRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDEVDSDGKAKNI 173


>gi|294782104|ref|ZP_06747430.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
 gi|294480745|gb|EFG28520.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
          Length = 359

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 2/184 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF LF+ E+
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGSAIFILFLQES 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           II P+    +K +  K         L+E  F    D   I + K   +   + I   +  
Sbjct: 121 II-PRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKP 179

Query: 180 DTQT 183
           + +T
Sbjct: 180 EDKT 183


>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 353

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 52/275 (18%), Positives = 115/275 (41%), Gaps = 17/275 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  
Sbjct: 2   IKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPRE 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    
Sbjct: 62  LEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P   +  K++  +A    +  +  + L +  D D ++ I +    N L+ + I +   
Sbjct: 122 VAPISETKAKEIRTQAISGGSL-FSSDRLVWAKDGDNFVSIGEVVDKNNLRDVSIYEFDN 180

Query: 180 DTQTHKIYYAQSGSIDLDR------QAIILNDGEVH----RKSPISKDISIMKFKSYTLQ 229
           D    KI  A++ +   D       Q+   +D  +H         S  ++  K    T++
Sbjct: 181 DLYLRKITTAEAANYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSSSLTPDKLGVVTVK 240

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
            E+ +   ++   N     +L N + N+  YR  L
Sbjct: 241 PEALSIRGLIDYVN-----YLENNSQNSERYRLAL 270


>gi|319788014|ref|YP_004147489.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466526|gb|ADV28258.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 33/235 (14%)

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           R++E+ +++  G     L++P+L   + + + + +    + P  + T   +  +A  +L 
Sbjct: 82  RDSEMAVLNAVGVGPKRLLRPLLMAVVPVVVAVGMCSLWLGPWAQRTAANMIEQANRSLI 141

Query: 142 FSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-- 196
            + LE   F  L +    +YI     +   TLQG+F+   RD +   +  A++GS++   
Sbjct: 142 VAGLEPGRFTSLPNGGGIVYIDGMSED-GRTLQGVFLQRERDGRVD-VVTARTGSLEFGG 199

Query: 197 DRQAII-LNDGEVHRKSPISK--DISIMKFKSYTLQTESANSSTIVLKANDQ-----NLS 248
           DR   + L DG    + P+ +  D  +M++       E A       +A+D       LS
Sbjct: 200 DRDRFLRLADGR-RLEGPLEQGLDFRLMRYAV----NEVALPDRAEERADDDPAIAPTLS 254

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            L N      + RP  +    +E H RLT  L  + F L+++  A  R+  RQ++
Sbjct: 255 -LFN------DGRPAAI----AELHGRLTPPLMALAFALLTVPLA--RSSPRQQR 296


>gi|228472915|ref|ZP_04057672.1| permease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275497|gb|EEK14274.1| permease [Capnocytophaga gingivalis ATCC 33624]
          Length = 477

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 117/266 (43%), Gaps = 29/266 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   ++ +     S  +++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFISSFLIIMVIFIFQTIWLYVDELVGRGLSFLVVIKFIALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKATRMLILFMVLLSIGVFFTFNN 120

Query: 121 IEP-------KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQ 171
           ++P         R +IK  + +  LA++     + +F  +  D  IK++K    N   L 
Sbjct: 121 LQPWSNRKFVALRDSIK--NKQPSLAIS-----QGIFNNV-QDFSIKVAKKTGENEQYLH 172

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHR-----KSPISKDISI 220
            I I     +  T  +  A++G +   ++      +IL DG  +      KS I+     
Sbjct: 173 DIVIHKVGINGDTRTVIKAKNGELSGHKKGSDVLQLILKDGSYYEDVYNDKSDITFPFVK 232

Query: 221 MKFKSYTLQTE-SANSSTIVLKANDQ 245
            KF+++ L  + SA ++ I    N +
Sbjct: 233 AKFETHVLNIDISALNADITYDENAE 258


>gi|237756215|ref|ZP_04584779.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691625|gb|EEP60669.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 336

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 30/176 (17%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC- 125
           F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +I P   
Sbjct: 65  FAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTVIVPSAN 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           R   K L+ K +     SY+ EN+    F +++D++ + + K    NT   I        
Sbjct: 125 RERYKFLTYKVK-----SYILENVSPKNFSKINDNVSVYVEK-KEKNTFYNIL------- 171

Query: 182 QTHKIYYAQSGSIDLDRQA------IILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
               IY A SG +   ++       +IL DG +    P  K    +K++ YT   +
Sbjct: 172 ----IYNASSGYLITAKEGMFISNNLILKDGYIQL--PSGKSFDTIKYEKYTFSLD 221


>gi|34498370|ref|NP_902585.1| hypothetical protein CV_2915 [Chromobacterium violaceum ATCC 12472]
 gi|34104224|gb|AAQ60583.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 12/254 (4%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESL---NILLKISGYLIPTVLPMVTPFCFAMETTNV 76
            +F+V +A +I   Q INL+  + E       +  + G+      P++      +    V
Sbjct: 17  GVFVVLLA-IIVSTQAINLLGRAAEGQIANEAVTALIGFWTLGFFPVLMILTVFVSVLVV 75

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           LT   R+ E+++  + G S    + P++   + L+I +      + P      +  +   
Sbjct: 76  LTRTWRDHEMVVWLSAGLSLRDWVWPIMRFTLPLAILIAGVTLFVGPWADQRSQDYAEII 135

Query: 137 QLALTFSYLEENLFFRLDDDLYIK-ISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +     S +   +F        +  I  Y+  ++    IF+ D  D +   I+ A+ G I
Sbjct: 136 KRREEISAISPGVFKESASSSKVYFIENYSGLHSAATNIFMQDMTDGKVSTIF-AKHGYI 194

Query: 195 DL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNL-SFL 250
            +     + ++L DG+ +   P   D  I +FK YT     + + T    +N Q++ + +
Sbjct: 195 SIKPDGERVLVLEDGKRYVGEPGQADYQIGEFKRYTASLGDSQAVT-GPASNRQSIPTSV 253

Query: 251 LNPNPNNPNYRPEL 264
           L     NP YR EL
Sbjct: 254 LLAGSGNPEYRAEL 267


>gi|170692022|ref|ZP_02883186.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
 gi|170143306|gb|EDT11470.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTRFIKPIGMFATPIIILICFFVFVGW----PWSNQQSKM 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  + + + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESASSHRVFFIEKMSPDQGHVENVFVTSTENGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           ++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES
Sbjct: 190 KNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIES 235


>gi|253564060|ref|ZP_04841517.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947836|gb|EES88118.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301161640|emb|CBW21180.1| putative permease [Bacteroides fragilis 638R]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++L  +G  F+  CLFI  + ++ + +    LV    E +++L +   Y   +++PM  P
Sbjct: 15  FLLLFVGTFFI--CLFIFMMQFLWKYVDE--LVGKGLE-MSVLAQFFFYSALSLVPMSLP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +     +     ELL +   G S + +++P++ L   +    F  +N+I P+ +
Sbjct: 70  LAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQ 129

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTH 184
           + +  L    +       + E +F+   D   +K+ + +     L  + I D S +    
Sbjct: 130 AKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSNNFDNA 189

Query: 185 KIYYAQSGSIDL--DRQAIILN 204
           +I  A SG +++  D+Q + L+
Sbjct: 190 RIIVADSGRLEMTADKQHLYLH 211


>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   +G + ++  L ++F   VI+I +R     S    ++++L+++ Y +P  L    P
Sbjct: 15  YLTALVGATLVVGALLMLFD--VIEITRRSG---SKAIGIDVVLEMALYHLPMSLQSALP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           F F      +   + R++EL++I   G S    + PV+ + ++L I
Sbjct: 70  FVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGI 115


>gi|317153285|ref|YP_004121333.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943536|gb|ADU62587.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 388

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 132/304 (43%), Gaps = 31/304 (10%)

Query: 18  MSCLF-IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++CL  ++ I  ++Q+  R   +S +    NIL ++  YL P  L ++TP    +     
Sbjct: 20  VACLLGLILIGRMLQL--RSLFLSQNIGFFNIL-QLFFYLTPFFLLLITPIATMLSVFLT 76

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENIIEPKCRSTIKQLSAK 135
              M+ + EL  +   G S   ++   +   +L ++F  FIS   +          L   
Sbjct: 77  FLRMSTDNELTALKANGVSLYRMLPAPIAFCVLCTLFTFFISMWGLAWGMDMFKTSLYQF 136

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKY-----NPNNTLQGIFIVDSRDTQTHKIYYAQ 190
           A+    F+ L+  +F    +  +  I+ Y     N    L+ +F+ D   +    +  A 
Sbjct: 137 ARSHSRFA-LQPGVF----NKEFPGITFYAHQVDNDTGELKFVFVRDQSISGASVVVVAP 191

Query: 191 SGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA----NSSTIVLKA 242
              I          I+ N G ++R+S   +DI+I++F SY+++ +      + S    KA
Sbjct: 192 EARIVSSPKTAEVHIVFNKGRIYRQS--GEDINILRFGSYSVRLDLGKLLGDFSFSEEKA 249

Query: 243 NDQNLSFLLNPNPNNPNYRPE----LLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRA 297
            D   +  L    N+P+  P+     L    +E++KRLT  L  +I G+ +I +A   R 
Sbjct: 250 KDMTFA-ALREIRNDPSIAPQQTAQFLRKVDTEYYKRLTLPLGCLILGMFAIPIAYVFRG 308

Query: 298 LVRQ 301
           L +Q
Sbjct: 309 LRQQ 312


>gi|265765250|ref|ZP_06093525.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254634|gb|EEZ26068.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++L  +G  F+  CLFI  + ++ + +    LV    E +++L +   Y   +++PM  P
Sbjct: 15  FLLLFVGTFFI--CLFIFMMQFLWKYVDE--LVGKGLE-MSVLAQFFFYSALSLVPMSLP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +     +     ELL +   G S + +++P++ L   +    F  +N+I P+ +
Sbjct: 70  LAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQ 129

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTH 184
           + +  L    +       + E +F+   D   +K+ + +     L  + I D S +    
Sbjct: 130 AKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSNNFDNA 189

Query: 185 KIYYAQSGSIDL--DRQAIILN 204
           +I  A SG +++  D+Q + L+
Sbjct: 190 RIIVADSGRLEMTADKQHLYLH 211


>gi|53711884|ref|YP_097876.1| hypothetical protein BF0593 [Bacteroides fragilis YCH46]
 gi|60680112|ref|YP_210256.1| putative permease [Bacteroides fragilis NCTC 9343]
 gi|52214749|dbj|BAD47342.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491546|emb|CAH06298.1| putative permease [Bacteroides fragilis NCTC 9343]
          Length = 636

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++L  +G  F+  CLFI  + ++ + +    LV    E +++L +   Y   +++PM  P
Sbjct: 15  FLLLFVGTFFI--CLFIFMMQFLWKYVDE--LVGKGLE-MSVLAQFFFYSALSLVPMSLP 69

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +     +     ELL +   G S + +++P++ L   +    F  +N+I P+ +
Sbjct: 70  LAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNVIGPQAQ 129

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTH 184
           + +  L    +       + E +F+   D   +K+ + +     L  + I D S +    
Sbjct: 130 AKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFSNNFDNA 189

Query: 185 KIYYAQSGSIDL--DRQAIILN 204
           +I  A SG +++  D+Q + L+
Sbjct: 190 RIIVADSGRLEMTADKQHLYLH 211


>gi|194333657|ref|YP_002015517.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311475|gb|ACF45870.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 27/225 (12%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI--NLVSSSTESLNI----LLKISG 54
           MK  + YIL+     FL + L I+F+ + +Q         V    + L I    LL+IS 
Sbjct: 1   MKIVDRYILKAHAAPFLFAFLTIIFV-FTLQFFSLFIARFVGKGLDLLVISELILLQIS- 58

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           +++   +PM       M   N+    NR +E+ ++ + G S   +I PVL  A +L+  +
Sbjct: 59  WMVVLAVPMAVLVSTLMAFGNL---TNR-SEIAVMRSGGLSMSRVILPVLIAASVLAFLV 114

Query: 115 FISENIIEPKCRSTIKQL-----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-N 168
               N++ P+     K L       K    LT     EN F    D   I +   +P+  
Sbjct: 115 ERFNNVVLPEANYQAKMLLRDITKTKPSFGLT-----ENAFSSFIDGYSILVRDIDPDSG 169

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEVH 209
            L+G+ I +        +  A++GSI    D   +I+   +GE+H
Sbjct: 170 ELRGVTIYEGTRDDYSTVITAETGSISFTQDSHYLIMELYNGEIH 214


>gi|295689676|ref|YP_003593369.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295431579|gb|ADG10751.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 380

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/162 (18%), Positives = 67/162 (41%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           L   +++    +S  + LKI    +P +L ++ P    +     L  ++   E+++    
Sbjct: 33  LSEFDVLVEQRQSAVVFLKIILLALPQLLAIMMPLALFVAALVALNRLHTEQEIVVCFAG 92

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G SR  +I P + LA++ ++   IS   ++P     I++ +   +  +  + ++   F  
Sbjct: 93  GMSRWAVISPAMRLAVMAALISLISGLWLQPWSARQIRETAFDIKTDVASTLVQPGQFTE 152

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
               L +     N +N +Q +FI           Y ++   I
Sbjct: 153 PGPGLTVYAQSINRDNKIQNLFIHQEMPNGGASTYSSREAEI 194


>gi|171059277|ref|YP_001791626.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
 gi|170776722|gb|ACB34861.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 32/245 (13%)

Query: 4   FELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           F+  + + + RSF   L+  L IV    +I+ L +  L   S + + +LL   GY     
Sbjct: 3   FDSTLRKELSRSFGGTLIVILTIVLTMMLIRTLGQAALGRVSPQDVVLLL---GYTSLGH 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL---------FLAILLS 111
           LP +      +   + LT M  ++E+ I   +G S    ++PV+           A+LL 
Sbjct: 60  LPTMLCLSLFVAVVSTLTRMYGDSEMTIWFASGVSLTRFVRPVVRFGTPIVFFVAALLLF 119

Query: 112 IFLFISENIIEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NT 169
           ++ + + NI E + R   +  LS  A      S   + +FF         I K +P+  T
Sbjct: 120 VWPWSNRNISELRGRYEQRSDLSRVAPGQFQTSSNGQRVFF---------IDKQSPDAGT 170

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDL-----DRQAIILNDGEVHRKSPISKDISIMKFK 224
            + IFI+D R      +  AQ+G IDL       + ++L++G         +  +I +F 
Sbjct: 171 GRNIFILDQR-VDRESVTSAQTGRIDLPDADDTHRRLVLDNGARTDLDLKGETRTISRFD 229

Query: 225 SYTLQ 229
            Y+++
Sbjct: 230 QYSIR 234


>gi|326568200|gb|EGE18282.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC8]
          Length = 442

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/252 (19%), Positives = 104/252 (41%), Gaps = 36/252 (14%)

Query: 7   YILRC-IGRSFLMSCL---------FIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           +ILRC I R ++ + +         F+V I    ++++   + +    ++ +L ++ GY 
Sbjct: 56  HILRCHILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYN 115

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
            P  L ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L      
Sbjct: 116 FPYFLELILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGW 175

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFI 175
              + +P        +  +  +A  F  +    F     D ++ + +   N   L+ + I
Sbjct: 176 VSMVAKPWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVII 234

Query: 176 V--------DSRDTQTHK---IYYAQS--------GSIDLDRQAIILNDGEVHRKSPISK 216
           +        D +  Q+HK   I +A+S        G I LD     L  G  +   P S+
Sbjct: 235 IQMHTAEPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLD-----LQQGRRYEVDPTSR 289

Query: 217 DISIMKFKSYTL 228
             S + F+ Y +
Sbjct: 290 QYSQIGFERYRM 301


>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 360

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL   L +V + + I++++R +  S  T S  ++ + S + +P +L  + PFC  +   +
Sbjct: 22  FLGIFLLLVLVDY-IEMVRRTS--SIPTASAIMVAETSLFRVPQLLEKLMPFCILIGAMS 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              +++R+ EL++    G S    I P L  A+L+ +   +  N I    +   K++ AK
Sbjct: 79  CYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVVYNPISAAMQERSKEMEAK 138


>gi|157374155|ref|YP_001472755.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
 gi|157316529|gb|ABV35627.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 17/262 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  S  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MRILDLYIARTIVSSSALCLLILTGLSGIIKWVDQLRLVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P    +     +  +  N+EL+++ ++G SR  +    +  AI L + +      
Sbjct: 61  LEMFFPLGVLLGALIGMGMLASNSELVVMQSSGLSRWQITLSAMKTAIPLMLLIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ + D DL++ I +    N L  I + +  +
Sbjct: 121 GAPVAEQKANELQATKLSGGSLIKSSRGIWAK-DGDLFVNIGEVEDINHLGNITLYEFDE 179

Query: 181 T--------QTHKIYYAQSGSI------DLDRQAIILNDGEVHR-KSPISKD-ISIMKFK 224
           T          H +Y      +      DL    + L D  ++R +S ++ D +S++  K
Sbjct: 180 TLSLVRTIHAEHGVYSNDHWRLMDVRQTDLTEDKVTLTDLTLYRWESTLTPDKLSVVSVK 239

Query: 225 SYTLQTESANSSTIVLKANDQN 246
             +L  +        LK N+Q+
Sbjct: 240 PESLSIQGLMGYLDYLKVNNQD 261


>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/75 (22%), Positives = 41/75 (54%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ PF   + T   L S++ N EL+ +  +G S  +L++P + + +  ++ ++ +   
Sbjct: 67  LDVILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLFFTVLMYGNAEF 126

Query: 121 IEPKCRSTIKQLSAK 135
           + PK +  +KQ+  +
Sbjct: 127 LLPKAQKGLKQIHDR 141


>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 32/212 (15%)

Query: 8   ILRCIGRSFLM-SCLFIVFIAWVIQILQRINLV----SSSTESLNILLKISGYLIPTVLP 62
           + R   R F++ SC   + I  ++ ++  I +V    S  T S  ++ + S + +P +L 
Sbjct: 10  LARYFARRFIVASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRVPQLLE 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + PFC  +   +   +++R+ EL++    G S    I P L  A+++ I   ++ N I 
Sbjct: 70  RLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVAYNPIS 129

Query: 123 PK---------------------CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI 161
                                   +S I Q++++ Q ++  + L +N   RL     + +
Sbjct: 130 AAMQERSKEMEAQLFSNGGVQDVAQSWINQVTSEGQ-SIISAALSQNQGTRLSG---VTV 185

Query: 162 SKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
            ++NP+ + +    +D+RD       +   G+
Sbjct: 186 FRFNPDGSFRD--RIDARDANLEPGQWRLGGA 215


>gi|91774577|ref|YP_544333.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
 gi|91708564|gb|ABE48492.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           S +++++N LL   G+ +   LPM+      +     L+  +R++E+++  + G    + 
Sbjct: 42  SLASDAINTLL---GFSMLKFLPMMLSLTLFLAVLLTLSRWHRDSEMVVWFSAGQGLSSW 98

Query: 100 IKPVLFLAILLSIFLFISENIIEP----KCRSTIKQLSAKAQLA-LTFSYLEENLFFRLD 154
           I+PVL   + + + + +    + P    K      QL ++ +LA ++    +E+   R  
Sbjct: 99  IRPVLTFGLPVIVVIALLSLFVTPWATGKGAEFRDQLKSRDELASISPGVFKES---RHA 155

Query: 155 DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRK 211
           D ++   S     N ++ IF V S   Q   I  A  G  +        +++ +G  +  
Sbjct: 156 DRVFFVESFDELGNIVKNIF-VQSMQHQKLGIIVAARGHRETAENGDDFLVMQNGRRYEG 214

Query: 212 SPISKDISIMKFKSYTLQTESAN 234
           +P + + SI +F+ Y ++ E A 
Sbjct: 215 TPNTAEYSITEFERYAIRIEPAE 237


>gi|163750107|ref|ZP_02157350.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
 gi|161330164|gb|EDQ01146.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 112/266 (42%), Gaps = 25/266 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISG----YL 56
           MK  +LYI R +  S  +  L +  ++ +I+ + ++ +V       N  +  +G    +L
Sbjct: 1   MKILDLYIARTLVSSSALCLLILTGLSGIIKWVDQLRVVGRG----NYTMLDAGIYVLFL 56

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP  + +  P    +     +  +   +EL+++ + G SR  +    +  A+ L + + +
Sbjct: 57  IPRDIEIFFPMAVLLGALIGMGMLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMV 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
                 P       +L A      +       ++ + D DL++ I +    N+L+ I + 
Sbjct: 117 LGEWGAPAAERRANELQAFKVSGGSLIKSSRGIWAK-DGDLFVNIGEVENINSLRNITLY 175

Query: 177 DSRDTQTH-KIYYAQSG-------------SIDLDRQAIILNDGEVHR-KSPISKD-ISI 220
           +   T T  K  +A+ G              IDL +  + L D  ++R  S ++ D +S+
Sbjct: 176 EFDSTLTLVKTIHAERGVYSNDHWRLLDVRQIDLTKDKVTLTDLTLYRWDSTLTPDKLSV 235

Query: 221 MKFKSYTLQTESANSSTIVLKANDQN 246
           +  K  +L  +        L+AN+QN
Sbjct: 236 VSVKPESLSIQGLLGYLDYLEANNQN 261


>gi|32491207|ref|NP_871461.1| hypothetical protein WGLp458 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166414|dbj|BAC24604.1| yjgP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 37/307 (12%)

Query: 7   YILRCIGRS-FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL----IPTVL 61
           Y+++ I +S F + C  I+F+ +  Q L RI  +SS +E L I  KI  +L    IP ++
Sbjct: 6   YLIKKILKSQFHILC--ILFLIFFCQKLVRI--LSSMSEEL-IPKKIIFFLLILYIPEII 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    V+  ++ + E++ I   G      IK +LFL +L+  F F++   I
Sbjct: 61  KLILPLSLFISIALVMQKLHNSNEIISIKTCGIGNECFIKVILFLNLLVMSFSFVNVMWI 120

Query: 122 EP-----KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            P     K +     LS   +L L     E+   F  D ++ + +      N L+ IFIV
Sbjct: 121 SPLALNYKHKIISYNLSNIDKLKLN----EKQFKFIKDKNIILFVDNIKDKN-LKNIFIV 175

Query: 177 D---SRDTQTHKIYYAQSGSI--DL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                       ++ ++ GS+  DL  ++  I LN GE +     S    I  F+ Y  Q
Sbjct: 176 KFILKNKEYIPVVFVSKHGSLYKDLLKNKNVINLNYGEYYEIDFKSNYFFIASFERY--Q 233

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            E  N+ + + + + + + F         N     +E Y+ E++ R+T     +I  +IS
Sbjct: 234 IELFNTFSRLKEPSSEYVYF--------KNLFNSCIEEYKLEYNWRITIVFSVLIMSIIS 285

Query: 290 IVAADKR 296
                K+
Sbjct: 286 FALNIKK 292


>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 20/193 (10%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           S +++    PM       M       ++   +E+ +   +G S   L+ P+L   ++LS 
Sbjct: 57  SAWMVGLAAPMAVLIAVVM----AFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSF 112

Query: 113 FLFISENIIEP----KCRSTIKQL-SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
           F+    N+++P    + RS +  +  AK    +T     EN F  L D   I + K +  
Sbjct: 113 FVERFNNVVQPLANYQARSLMDDIVKAKPNFGIT-----ENAFSPLVDGYSILVRKSDER 167

Query: 168 NTLQG-IFIVDSRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIM 221
               G I I DS       +  A+ G I          + L +GE+H  + P  +    M
Sbjct: 168 TGGIGDIIIYDSTRPDFRSVITAEEGRISFSDDGGYLLLTLRNGEIHEVQQPDYRLYRKM 227

Query: 222 KFKSYTLQTESAN 234
            F+ +    ES  
Sbjct: 228 SFQQHRYVFESTG 240


>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 365

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           I++++R + ++S+  S  ++ + S + +P +L  +TPFC  +       +++R  EL++ 
Sbjct: 37  IEMVRRTSGLASA--SALVVAETSLFRVPQLLEKLTPFCVLIGAMTCYLALSRQLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              G S    I P L  AI+L        N +    R   K++ A+
Sbjct: 95  RAAGVSAWQFISPALACAIVLGALATTVYNPLSANLRELSKRMEAE 140


>gi|227114629|ref|ZP_03828285.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 371

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/240 (17%), Positives = 98/240 (40%), Gaps = 23/240 (9%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N+++ + G  +P ++ ++ P    +        +   +E+ ++   G  +  L+K  L L
Sbjct: 46  NLVISLLGLGVPEMVQLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A+  +I   I+   + P      +++ A+A+     + L E  F        +       
Sbjct: 106 AVFTAIVATINVMWLSPWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIM 221
            +  + +F+   R +   +  +  A  G I  +    Q + L++G  +  + + +D  I 
Sbjct: 166 GSEFEHVFLAQLRPSGNARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRIT 225

Query: 222 KFKSYTL----QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            F +Y      Q+ + N+S +       +++ L + + ++           R+EFH RLT
Sbjct: 226 DFTNYQAVIGHQSVTLNNSDV----QQMDMNTLWHSDAHDA----------RAEFHWRLT 271


>gi|29347827|ref|NP_811330.1| hypothetical protein BT_2417 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339729|gb|AAO77524.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
           IG  F+  CLFI    +++Q L R ++ +      ++++ +   Y   T++P+  P    
Sbjct: 4   IGTFFI--CLFI----FMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAIL 57

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           + +     +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ + 
Sbjct: 58  LASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLY 117

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYY 188
            L    +       + E +F+    D  +KI+K N     +  + I + +D  +   I Y
Sbjct: 118 TLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIY 177

Query: 189 AQSGSIDL--DRQAIILN 204
           A SG +++  D+Q + L+
Sbjct: 178 ADSGRMEMTADKQHLWLH 195


>gi|298369121|ref|ZP_06980439.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283124|gb|EFI24611.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/260 (19%), Positives = 117/260 (45%), Gaps = 12/260 (4%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTES---LNILLKISGYLIPTVLPMVTPFCFAM 71
           SF    +F+V +A V+   Q INL+  + +    ++ +  + G+ +  + P++      +
Sbjct: 12  SFTAVGIFVVLLA-VLVSTQAINLLGRAADGRVAVDAVAALVGFWVIGMTPLLLVLTAFI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCRS 127
            T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + P    + R 
Sbjct: 71  STLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVMPWAELRSRE 130

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
             + L  K +L+L  +  E N   +  D +Y   +    +  ++ +F+ +        I 
Sbjct: 131 YAEILKQKQELSLVEAG-EFNSLGKRSDRVYFVETFDTESGIMKNLFLRELDKNGNDNII 189

Query: 188 YAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           +A+ G+  L  +++ + L +G  +   P   D + + F+  ++   S     +   A+ +
Sbjct: 190 FAKEGNFALTDNKRTLELRNGYRYSGKPGRADYNQVSFEHLSMII-STTPKIVDPIAHRR 248

Query: 246 NLSFLLNPNPNNPNYRPELL 265
            +        +NP Y+ EL+
Sbjct: 249 TIPTAKLFGSDNPQYQAELM 268


>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 112/265 (42%), Gaps = 19/265 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R I  +  ++    V ++ +I+ ++++  +      L        Y +P  
Sbjct: 1   MRIIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIGRGNYDLAHAALYVLYAVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++   G SR+ +IK V+  A+LL I        
Sbjct: 61  VEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI----- 175
           + P   +  +++ A+A    +    +  ++ + D D ++ I +      L+ + I     
Sbjct: 121 LAPSGEAKAREIRAQAISGGSLIAAKNGVWAK-DGDYFVNIGEVLDRGQLKKVQIYGFND 179

Query: 176 ---VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK----DISIMKFKSYTL 228
              +DS  +    IY  +S  +  D +   L + E+  KS   K     ++  K    T+
Sbjct: 180 ELKIDSWLSAKSAIYQDKSWLLT-DVEEFSLTENEIITKSHSQKIWNSSLTPKKLGVVTV 238

Query: 229 QTESANSSTIV-----LKANDQNLS 248
             ES +   ++     L+AN+Q+ S
Sbjct: 239 TPESLSLRGLIDYLDYLEANEQDPS 263


>gi|307154796|ref|YP_003890180.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
 gi|306985024|gb|ADN16905.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
          Length = 388

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 45/230 (19%), Positives = 100/230 (43%), Gaps = 28/230 (12%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT 98
           V+ S  S++I L+I    +P  + +  P    + T    + +  ++EL+   + G S   
Sbjct: 55  VTESGLSISIALQILMLKMPEFVVLAFPMSILLATLMGYSRLASDSELIAFRSIGISPYR 114

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL- 157
           L+ P L L+++++   F   + + P+     K + A A        L+++   +++D++ 
Sbjct: 115 LLVPSLILSLMVTGTTFFFSDYVAPQATQQAKSILADA--------LKQDKPLQVEDNII 166

Query: 158 ---YIKISKYNPNNT----------------LQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
              Y KI++ N  +                 +QG+ I+D      ++I  +QS   ++D+
Sbjct: 167 YPEYKKITQDNGRDQTILTRLFYAEKFDGQQMQGLTILDRSQPGVNQIVTSQSAIWNVDQ 226

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
            +    +G ++  +P     +I++F+   L    A       K N  ++S
Sbjct: 227 NSWDFYNGTIYLIAPDGSYRNIVRFEHQQLDLPRAPLDIAKRKQNPADMS 276


>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 359

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 141/343 (41%), Gaps = 35/343 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           MK  +LYI++    ++    L  + +  VI I +++ + +        IL++     IP 
Sbjct: 1   MKKLDLYIIKKFLVTYFFVVLMFMLVITVIDITEKMEDFMKHKLSIWFILVEYYFAFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  +++P    + T  V  ++   TE++ + ++G S   ++ P L  +IL++  +F    
Sbjct: 61  MANLLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSG 120

Query: 120 IIEPKCRSTIKQLS-AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---- 174
            + P      K++   K  +  TF Y   N+  +     Y+ I  YN    +   F    
Sbjct: 121 WLIPHGNK--KRVDFEKKYIKSTFFYEGRNVHMKTAPTTYVYIESYNSEINVGYQFTLET 178

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I+D+R     K   A   + +   +   + +  + R +   K+     FK   L T    
Sbjct: 179 IIDNRLVSKLK---AARMNWNDSTKKWRMEEYFIRRFTEDGKE---EVFKGRGLDT---- 228

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLE--------TYRSEFHKRLTQWLFPVIFG 286
           + TI  K  +         +    N +  LLE        TY +E ++R T     +I  
Sbjct: 229 ALTITPKDFEDTYMLFETYDMGELNNQIALLEARGSENISTYITEKYQRYTYPFSVIILT 288

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           LI ++A+ +++  R+          L+I+FG    F YII  I
Sbjct: 289 LIGVIASSRKS--REGA-------GLTIAFGFLLAFVYIIFMI 322


>gi|158337167|ref|YP_001518342.1| YjgP/YjgQ family membrane protein [Acaryochloris marina MBIC11017]
 gi|158307408|gb|ABW29025.1| membrane protein, YjgP/YjgQ family, putative [Acaryochloris marina
           MBIC11017]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 13/181 (7%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLI 100
           SS ++L +L+      +P  + +  P    +      + + R  EL+ +   GTS   +I
Sbjct: 62  SSVDALQVLV----LQLPRFMVLALPMSMLLAPLLTYSQLARKNELIALKACGTSVYRVI 117

Query: 101 KPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF------RLD 154
           +P L  ++++++        I P   + + +L A+  ++   +   +N+        RL 
Sbjct: 118 RPALCFSLIVAVSTLTLNEWIVPPATAAVHRLQAQQTVSQITAIPRQNIVHQTYHHQRLT 177

Query: 155 DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
              +   ++      L  + I+  +D   H I+ A+    D   Q  IL+ G  +   P+
Sbjct: 178 QLFH---ARAFDGEALHQLTILQFQDRHLHHIWLAKQAIWDSTHQQWILSQGTRYTIDPV 234

Query: 215 S 215
           S
Sbjct: 235 S 235


>gi|326559485|gb|EGE09908.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 7169]
 gi|326566095|gb|EGE16252.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC1]
 gi|326567798|gb|EGE17902.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 12P80B1]
 gi|326572163|gb|EGE22159.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC7]
          Length = 437

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 93/227 (40%), Gaps = 26/227 (11%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+V I    ++++   + +    ++ +L ++ GY  P  L ++ P  F +    V   + 
Sbjct: 76  FLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLY 135

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + E+ +++ +G SR  + + ++ L ++L         + +P        +  +  +A  
Sbjct: 136 TDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQV 195

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--------DSRDTQTHK---IYYA 189
           F  +    F     D ++ + +   N   L+ + I+        D +  Q+HK   I +A
Sbjct: 196 FDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTAEPSDIQSRQSHKRDSIIFA 254

Query: 190 QS--------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +S        G I LD     L  G  +   P S+  S + F+ Y +
Sbjct: 255 KSATHVETGNGQIQLD-----LQQGRRYEVDPTSRQYSQIGFERYRM 296


>gi|330997503|ref|ZP_08321352.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
 gi|329570534|gb|EGG52258.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLP 62
           F+ Y L  +G  F+  CLFI    +++Q + R ++ +     +L++L     Y   T++P
Sbjct: 12  FKAYSLLFVGTFFI--CLFI----FLMQFMWRYVDELIGKGLTLDVLAHFFYYASLTLIP 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    + +     ++    ELL +   G   + +++P++   ILL I  F  +NI  
Sbjct: 66  MSLPLAILLASLITFGNLGERFELLSMKAAGIPLVRILQPIIIFNILLCIGSFYFQNITG 125

Query: 123 PKCRS-------TIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNNTLQG 172
           P+ +        ++KQ S + ++     Y E    N+F            K   N  L G
Sbjct: 126 PEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVE---------KKGKENGMLYG 176

Query: 173 IFIVDSRD 180
           + I  + D
Sbjct: 177 VMIYSTTD 184


>gi|124267132|ref|YP_001021136.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
 gi|124259907|gb|ABM94901.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
          Length = 363

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 13/241 (5%)

Query: 4   FELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           F+  + R + RSF   L+  + IV   ++I+ L +    S + + + +LL   GY+    
Sbjct: 3   FDSTLRRDLARSFGATLVVIMTIVITMFLIRTLGQAAGGSVAAQDVALLL---GYVALEN 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     LT M R++E++I   +G   +  + PVL L   L + + +    
Sbjct: 60  LPTILSLSLFIAVVTTLTRMYRDSEMVIWFASGVGLLRFVPPVLRLTAPLLLLVALLALF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVD 177
           + P     I +L  + Q     + +    F    D     +I+       N  + +F+++
Sbjct: 120 VWPWGNRQIAELKDRYQRRSDVARVAPGQFQSSADGKRTFFIE-RDTGEGNIARNVFVLE 178

Query: 178 SRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            R   +  +  A++G I  D D++ ++L  G+ +  +  + +  + +F SY +    A S
Sbjct: 179 -RKPDSESVTSARTGRIEMDGDQRFVVLESGQRNDINLATGERKLAQFDSYRVLAGEAVS 237

Query: 236 S 236
           S
Sbjct: 238 S 238


>gi|283957186|ref|ZP_06374650.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791362|gb|EFC30167.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 120/301 (39%), Gaps = 41/301 (13%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                          + F+Y               K  ++     L  +  ++ +D+  +
Sbjct: 125 VFELQDNFVNYKSTQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSDKY 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANSSTI 238
           +  I Y      D   Q II  +  V RK   S   S+ + K Y  +      S    T+
Sbjct: 169 ENIIMYRPKHKTDDKEQLIIAKEAHVQRKDD-SFAFSLNQGKMYNFEQGQSIFSGEFDTL 227

Query: 239 VLKA-----NDQNLSFL-----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           V+       N Q   F      LN NP     R  ++ T  + F   L   LF + FGL+
Sbjct: 228 VVNTQFNTDNLQTKKFYEYWNDLNENPQRA--REFVIYTTIALFP--LASTLFALCFGLV 283

Query: 289 S 289
           +
Sbjct: 284 T 284


>gi|227327171|ref|ZP_03831195.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/240 (17%), Positives = 97/240 (40%), Gaps = 23/240 (9%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N+++ + G  +P ++ ++ P    +        +   +E+ ++   G  +  L+K  L L
Sbjct: 46  NLVISLLGLGVPEMVQLILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVL 105

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A+  +I   I+   + P      +++ A+A+     + L E  F        +       
Sbjct: 106 AVFTAIVATINVMWLSPWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVK 165

Query: 167 NNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIM 221
            +  + +F+   R +   +  +  A  G I  +    Q + L++G  +  + + +D  I 
Sbjct: 166 GSEFEHVFLAQLRPSGNARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRIT 225

Query: 222 KFKSYTL----QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            F +Y      Q+ + N+S +       ++  L + + ++           R+EFH RLT
Sbjct: 226 DFTNYQAVIGHQSVTLNNSDV----QQMDMQTLWHSDAHDA----------RAEFHWRLT 271


>gi|153951328|ref|YP_001398257.1| hypothetical protein JJD26997_1188 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938774|gb|ABS43515.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMTPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                          + F+Y               K  ++     L  +  ++ +D+  H
Sbjct: 125 VFELQDNFVNYKSTQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSDKH 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRK 211
           +  I Y          Q II  +  V RK
Sbjct: 169 ENIIMYRPKHKAGDKEQLIIAKEAHVQRK 197


>gi|332880892|ref|ZP_08448562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681066|gb|EGJ53993.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 26/188 (13%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLP 62
           F+ Y L  +G  F+  CLFI    +++Q + R ++ +     +L++L     Y   T++P
Sbjct: 12  FKAYSLLFVGTFFI--CLFI----FMMQFMWRYVDELIGKGLTLDVLAHFFYYAGLTLIP 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    + +     ++    ELL +   G   I +++P++   ILL I  F  +N+  
Sbjct: 66  MSLPLAILLASLITFGNLGERFELLSMKAAGIPLIRILQPIIIFNILLCIGSFYFQNVTG 125

Query: 123 PKCRS-------TIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNNTLQG 172
           P+ +        ++KQ S + ++     Y E    N+F            K   N  L G
Sbjct: 126 PEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVE---------KKGKENGMLYG 176

Query: 173 IFIVDSRD 180
           + I  + D
Sbjct: 177 VMIYSTTD 184


>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 354

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 2/169 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+     R F+++ L  + +  VI  + +++    S  +   L  I  Y +P  
Sbjct: 2   VKRLDRYVFIETLRYFVLTLLTFMVLFIVIDFVSKMDTFLKSGIADGFLYVI--YRLPLY 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L++ + + EL ++   G S      P++FLA L SI  F+   +
Sbjct: 60  TVRVIPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIGEL 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           + PK  S  K +  K +    F    ++++F+ D+  ++ +   NP  +
Sbjct: 120 VVPKSISLSKSIYYKVKENKNFHVSGKSIWFKKDEKTFVFMEYVNPAKS 168


>gi|57237667|ref|YP_178915.1| hypothetical protein CJE0913 [Campylobacter jejuni RM1221]
 gi|86152068|ref|ZP_01070280.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153259|ref|ZP_01071463.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613133|ref|YP_001000511.1| hypothetical protein CJJ81176_0843 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415093|ref|YP_001482349.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005447|ref|ZP_02271205.1| hypothetical protein Cjejjejuni_04350 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315124344|ref|YP_004066348.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57166471|gb|AAW35250.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|85840853|gb|EAQ58103.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842985|gb|EAQ60196.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249473|gb|EAQ72433.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|157386057|gb|ABV52372.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747735|gb|ADN91005.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315018066|gb|ADT66159.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058276|gb|ADT72605.1| Predicted permease YjgP/YjgQ family [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315928910|gb|EFV08167.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
 gi|315931165|gb|EFV10138.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 120/301 (39%), Gaps = 41/301 (13%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                          + F+Y               K  ++     L  +  ++ +D+  +
Sbjct: 125 VFELQDNFVNYKSTQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSDKY 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANSSTI 238
           +  I Y      D   Q II  +  V RK   S   S+ + K Y  +      S    T+
Sbjct: 169 ENIIMYRPKHKADDKEQLIIAKEAHVQRKDD-SFAFSLNQGKMYNFEQGQSIFSGEFDTL 227

Query: 239 VLKA-----NDQNLSFL-----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           V+       N Q   F      LN NP     R  ++ T  + F   L   LF + FGL+
Sbjct: 228 VVNTQFNTDNLQTKKFYEYWNDLNENPQRA--REFVIYTTIALFP--LASTLFALCFGLV 283

Query: 289 S 289
           +
Sbjct: 284 T 284


>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 361

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI++   +  ++  +F+  I  +    Q   ++S    S   L+       P +
Sbjct: 1   MTKFNKYIIKLFVQYTVIVQVFVAIITLIANTFQHTKMLSEYNISFMTLIVYDLMKTPYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T  V+ ++ +N EL+   + G     L  P +   I LS+ L+ S ++
Sbjct: 61  LYTTMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADV 120

Query: 121 IEPK--------CRSTIKQLSAKAQLALTFSYLEE--------NLFFRLDDDLYIKISKY 164
           I PK            IK  +      LT  +L+E        NL    +  + I I++Y
Sbjct: 121 INPKIMLERERFAYENIKNRTFNVSGKLTDMWLKESDSSFININLMDPTEKKI-IGITEY 179

Query: 165 NPNNTLQGIFIVDSRDTQTHK 185
           + NN  Q  +IV     + ++
Sbjct: 180 HLNNNFQVDYIVTYDSAEYYE 200


>gi|85859086|ref|YP_461288.1| permease [Syntrophus aciditrophicus SB]
 gi|85722177|gb|ABC77120.1| permease [Syntrophus aciditrophicus SB]
          Length = 394

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/257 (19%), Positives = 111/257 (43%), Gaps = 21/257 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+++ I + F +    + F+  + +ILQ ++L+ +    L+ + ++  +L+P+ 
Sbjct: 1   MKIINRYLVKEILQPFGIVLFVLTFVLLMGKILQLMDLMINKGVGLSHIARLILFLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  ++ + EL ++  +G S   L  P+L +A++  +    +   
Sbjct: 61  LVFTLPISLLVSVLIALGRLSSDNELTVLKASGISLYRLTPPILMIALVSFMLTAATTLF 120

Query: 121 IEPKCRSTIKQL-----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGI 173
           + P   +  K L       KA + +      +   F  D +  +  ++  P++   ++G+
Sbjct: 121 LVPYSNTATKALIFNVARNKASIGI------KEKVFNADFNGVVLYAEKVPSDGRFMEGV 174

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAII----LNDGEVHRKSPISKDISIMKFKSY--- 226
            + D R         A+   +  D +++     L DG  +  +   K    M FK+Y   
Sbjct: 175 LVSDQRTADEPGTIIAKKAFLVADPKSMTVTLRLEDGSTYFVAENMKIFRKMDFKTYDIN 234

Query: 227 -TLQTESANSSTIVLKA 242
             LQ+ S+++  +  KA
Sbjct: 235 LDLQSSSSDAEKMRTKA 251


>gi|313200017|ref|YP_004038675.1| permease [Methylovorus sp. MP688]
 gi|312439333|gb|ADQ83439.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 355

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 15/200 (7%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           S +++++N LL   G+ +   LPM+      +     LT  +R++E+++  ++G      
Sbjct: 31  SLASDAINTLL---GFSMLKFLPMILSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGW 87

Query: 100 IKPVLFLAILLSIFLFISENIIEP----KCRSTIKQLSAKAQLA-LTFSYLEENLFFRLD 154
           I+PVL  AI +   + +    + P    K      QL ++ +LA ++    +E+   R  
Sbjct: 88  IRPVLTFAIPVVAVIAVLSLFVTPWATNKGSEFRDQLKSRDELASISPGVFKES---RNA 144

Query: 155 DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRK 211
           D ++   S     N ++ IF V S   Q   +  A  G     D     +++  G  +  
Sbjct: 145 DRVFFVESFDELGNVVKNIF-VQSVQHQRLGVVVASQGHRTVADNGDNFLVMEHGRRYEG 203

Query: 212 SPISKDISIMKFKSYTLQTE 231
            P + + S  +F+ Y+++ E
Sbjct: 204 KPNTAEFSTTEFERYSIRIE 223


>gi|253997951|ref|YP_003050014.1| permease [Methylovorus sp. SIP3-4]
 gi|253984630|gb|ACT49487.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 366

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 15/200 (7%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           S +++++N LL   G+ +   LPM+      +     LT  +R++E+++  ++G      
Sbjct: 42  SLASDAINTLL---GFSMLKFLPMILSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGW 98

Query: 100 IKPVLFLAILLSIFLFISENIIEP----KCRSTIKQLSAKAQLA-LTFSYLEENLFFRLD 154
           I+PVL  AI +   + +    + P    K      QL ++ +LA ++    +E+   R  
Sbjct: 99  IRPVLTFAIPVVAVIAVLSLFVTPWATNKGSEFRDQLKSRDELASISPGVFKES---RNA 155

Query: 155 DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRK 211
           D ++   S     N ++ IF V S   Q   +  A  G     D     +++  G  +  
Sbjct: 156 DRVFFVESFDELGNVVKNIF-VQSVQHQRLGVVVASQGHRTVADNGDNFLVMEHGRRYEG 214

Query: 212 SPISKDISIMKFKSYTLQTE 231
            P + + S  +F+ Y+++ E
Sbjct: 215 KPNTAEFSTTEFERYSIRIE 234


>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
 gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 75/166 (45%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL+    +F +  L  + I  ++ + ++ N +  +   LN +L   G     +
Sbjct: 1   MTILDKYILKRYLVTFSVMLLLFIPIGIMVHLSEQYNKMQDNEAPLNEILMYLGNFSIYI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             M+ P    +      + +  NTE++ + ++G S    ++P L  A++++ F+ +    
Sbjct: 61  GSMLLPIFLFLSVIFFTSKLAGNTEIVAMLSSGISYGRFLRPYLMGAVIVAAFMLLMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           I P       +   K         + EN+F +L+ + +I +S+++P
Sbjct: 121 IVPNASKGFNEFKFKYLKKGKQDRVTENIFNQLNANDFIYVSRFDP 166


>gi|313205632|ref|YP_004044809.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
           15868]
 gi|312444948|gb|ADQ81303.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
           15868]
 gi|315022637|gb|EFT35662.1| hypothetical protein RAYM_03529 [Riemerella anatipestifer RA-YM]
 gi|325334940|gb|ADZ11214.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MKSFELYILRCIGRSFLM--SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           +K  + YI++     FL   S LF +F+  +I I  ++   +    S   + K+  Y+  
Sbjct: 2   LKKLDRYIIKTFFGPFLFIFSVLFFIFLVNIIWI--KLYQFTGKGLSPFEIGKLLFYMGV 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +V+ MV P    + +     +     EL  +   G S   +++P++F+  LLSI LFI  
Sbjct: 60  SVVNMVLPLTVLLSSIMTFGAFGERYELAAMKAAGISLFRIMRPLIFVVTLLSIILFIFS 119

Query: 119 NIIEPKCRSTIKQL 132
           N + P      K +
Sbjct: 120 NNVIPDFNRKAKNM 133


>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 154/360 (42%), Gaps = 62/360 (17%)

Query: 29  VIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLI 88
           ++  ++++   S +  SL+ +L+   + IP +L    PF   M T   L  ++R++EL  
Sbjct: 30  ILDFMEKLGRFSKAGASLSAILQFFLFKIPEMLGQTMPFAVLMATLLALGMLSRSSELTA 89

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST---IKQLSAKAQLALTFSYL 145
           + + G S   ++ P+L L +L S+ L ++   + PK       I+++  K Q   TF  L
Sbjct: 90  LRSCGLSIPRIVLPILMLGLLGSLVLLVNSEFVVPKSYQQMEHIEKVVIKKQSVNTFFRL 149

Query: 146 EENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILN 204
             N++FR  ++L ++   + P   TL+G+ + +                +  D Q +   
Sbjct: 150 -NNIWFR-SNNLILQAKVFEPLTRTLKGVTVWE----------------LSADMQPVRRM 191

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSST----IVLKANDQNLSFLLNPNPNNPNY 260
           D E         ++  ++ +S+  Q     S+     + LK +D     +L+ N +N ++
Sbjct: 192 DAEQALYGSGGWELLQVRTRSFAGQGGVVASARLSVPLTLKVDDLR---ILDNNADNFSF 248

Query: 261 RPELLE-------------TYRSEFHKRLTQWLFPVIFG-LISIVAADKRALVRQRKKIH 306
           R +L E              YR+  H +L      + FG  + +V     AL   R    
Sbjct: 249 R-KLREYAVSLEKGGYPAGRYRTMMHAKLA-----LPFGAFVMVVLGIPFALKTGRTS-- 300

Query: 307 PIFISLSISFGVFWGFSY-IIHKIEQN--------PYYIPILYLFLFCISSIFLLMIKKK 357
              +++ +  GV  GF+Y II+   Q+        P+        +F ++ I+L M  K+
Sbjct: 301 --GVAMGVGAGVAIGFAYFIINAAVQSYGRSGVLPPFVAAWGANLIFVLTGIWLSMTVKQ 358


>gi|86133416|ref|ZP_01051998.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
 gi|85820279|gb|EAQ41426.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
          Length = 483

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 20/227 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F+ + L ++F+  +  + Q    ++    S+  +LK   Y    +
Sbjct: 1   MKILDKYILKSFLVPFIATFLIVLFVLVMQALWQAFENIAGKGISVIFILKFLYYTTLMI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L ++  N E     + G S   L++P+  LAI LS   F+  N 
Sbjct: 61  IPQALPIGVLLSSIMALGNLGENYEFAAAKSAGVSLQRLVRPIGILAIALSGLNFLFLNN 120

Query: 121 IEPKCRSTIKQL-----SAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGI 173
           + P      + L       K  LAL       ++  +++  D      KY    N L+ +
Sbjct: 121 VFPYANLKQRNLYLNIKKKKPALALVPGSFNADIPGYQIKFD-----EKYGEEENLLKKV 175

Query: 174 FIVD-SRDTQTHKIYYAQSGSIDLDRQA----IILNDG---EVHRKS 212
           +I D + +    K+  A+SG I  +  +     IL +G   E H KS
Sbjct: 176 WIYDLTSNRGNQKVITAESGKIVTEEGSRYMTFILYNGNYYEEHVKS 222


>gi|257095656|ref|YP_003169297.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048180|gb|ACV37368.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 359

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 52/281 (18%), Positives = 113/281 (40%), Gaps = 18/281 (6%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
           S + + LF + +    Q+++ +N  +    + + +  + G+     LP +      +   
Sbjct: 16  SGIFTALFAIMV--TTQLIRLLNEAAQGGVAPDAVAALLGFASLNYLPPLLSLSMFVAIL 73

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             L+   R++E+++  ++G      I+PVL  AI L   +      + P   S   +   
Sbjct: 74  LTLSRCYRDSEMVVWFSSGLPLTAWIRPVLVFAIPLVATIAALSFFLSPWAVSQSAEYRG 133

Query: 135 KAQLALTFSYLEENLFFR--LDDDLYIKISKYNPNNTLQGIFIVDSRDTQ---THKIYYA 189
           K  +      +    F      D +          + ++ +F+ ++++ +   T  +   
Sbjct: 134 KLSIRKDAGEVSPGTFHESSAGDRVVFVEGIAEDTSQVRNVFVSETKEGRVGVTMAVTGH 193

Query: 190 QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
           Q  + + DR  I+L DG  +  +P S ++ I+++  Y ++ E+  +  I        L  
Sbjct: 194 QEIAANGDR-FIVLQDGRRYELAPASPEVRILEYVRYAVRLETKEARGITPTPKSMPLRE 252

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           LL          P  L  YR+E   RL+     V+  L++I
Sbjct: 253 LL----------PVDLPAYRAELLWRLSIPCSAVVMALLAI 283


>gi|225851251|ref|YP_002731485.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
 gi|225646479|gb|ACO04665.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
          Length = 337

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA-ILLSIFLFISENIIEPKC 125
           F F + T  +  +M  N E+  + + G ++  LIKP++ ++ I+ ++ L +S  ++    
Sbjct: 65  FAFFLSTALLGFNMRENREIYAVYSAGITKGQLIKPLVVISLIIFTVSLIVSMFVVPYAN 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           R   K ++   +     +  E+N FF+L D++ I   K    N  + +FI +    QT  
Sbjct: 125 RERAKFITLNIKRYFLDAVQEKN-FFQLSDNVTIYTEK-KEGNRFENVFIYNRERGQT-- 180

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                +     D     L  G +    P  K  +I++F+SY    +
Sbjct: 181 ---ISAKEAFFDTTTFFLKKGYIQ--IPDEKGFNILRFESYRFNID 221


>gi|312795337|ref|YP_004028259.1| hypothetical protein RBRH_03151 [Burkholderia rhizoxinica HKI 454]
 gi|312167112|emb|CBW74115.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 37/196 (18%), Positives = 84/196 (42%), Gaps = 24/196 (12%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   R++E+++  + G S   LIKP+   A    +L++ F F+       + +   ++
Sbjct: 75  VLTRWYRDSEMVVWLSCGVSLTRLIKPIATFAAPIVVLIAFFAFVGWPWANEQSKLIRER 134

Query: 132 LSAKAQLALTF------SYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTH 184
              + +++L        S     +FF         I K +P+   ++ +F+  + + + +
Sbjct: 135 FQQRDEVSLLAPGQFRESAANHRVFF---------IEKMSPDQGRVENVFVTSTENGKVN 185

Query: 185 KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            +  +++G  ++       ++L +G  +   P   D  IM+F  Y ++ +S         
Sbjct: 186 -VVVSKTGHTEIHPNGDRFVVLENGRRYDGEPGKPDFRIMEFARYGVKIQSRQLVNRPTT 244

Query: 242 ANDQNLSFLLNPNPNN 257
            +    + L  PNP +
Sbjct: 245 TSLPTATLLREPNPTH 260


>gi|160898977|ref|YP_001564559.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
 gi|160364561|gb|ABX36174.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 27/276 (9%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+  I + + RSF  + + ++ +   + +++ +        S + +L + GY +   LP 
Sbjct: 3   FDSSIRKELARSFGATVVVLITVVMTMMLIRTLGQAYKGNVSPSDVLLVMGYTVLGQLPT 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL-FLAILLSIFLFISENIIE 122
           +      +     L+ M R++E++I    G    +L++P+L F   +L++   +   I+ 
Sbjct: 63  ILGLGLFVAVVGSLSRMYRDSEMVIWFAAGQGLASLLRPLLRFAWPVLAVIAVLGLGIL- 121

Query: 123 PKCRSTIKQLSAK----------AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG 172
           P     I+Q+  +          A      S     +FF +D D+    S    NN    
Sbjct: 122 PWANQQIEQIKTQFEQRSDIDRIAPGEFQESAGGSRVFF-IDKDVP---SATAANN---- 173

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +FIV + +     +  A+   +++   +R A +L DG+          + I +FK Y  Q
Sbjct: 174 VFIV-ANERGRESVTSARGARLEVIKGERMA-VLTDGQRMETQTSDGSVKISEFKEYGTQ 231

Query: 230 TESA-NSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
             S  N +     A     +  L P    P YR EL
Sbjct: 232 LGSGSNLAAAEEMAARSTYTHELLPR-TEPIYRAEL 266


>gi|209519258|ref|ZP_03268060.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
 gi|209500338|gb|EEA00392.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLARFIKPIGIFATPIIILIMFFVFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  +   + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESPTTHRVFFIEKMSPDQGHVENVFVTSTEGGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           ++G I+  +     ++L +G  +   P   D  IM+F+ Y ++ +S              
Sbjct: 190 KNGHIETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVNTPTTTGLPT 249

Query: 247 LSFLLNPNPNN 257
           ++ L NP   N
Sbjct: 250 MTLLRNPTNEN 260


>gi|205356326|ref|ZP_03223091.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345711|gb|EDZ32349.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 131/339 (38%), Gaps = 56/339 (16%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                          + F+Y               K  ++     L  +  ++ +D+  +
Sbjct: 125 VFELQDNFVNYKSTQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSDKY 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANSSTI 238
           +  I Y      D   Q II  +  V RK   S   S+ + K Y  +      S    T+
Sbjct: 169 ENIIMYRPKHKADDKEQLIIAKEAHVQRKDD-SFAFSLNQGKMYNFEQGQSIFSGEFDTL 227

Query: 239 VLKA-----NDQNLSFL-----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           V+       N Q   F      LN NP               EF   +T  LFP    L 
Sbjct: 228 VVNTQFNTDNLQTKKFYEYWNDLNENPQRAR-----------EFVIYITIALFP----LA 272

Query: 289 SIVAADKRALVRQRKKIHPIFISL----SISFGVFWGFS 323
           S + A    LV  R +   +++ +    +I FG+   FS
Sbjct: 273 STLFALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|295675785|ref|YP_003604309.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
 gi|295435628|gb|ADG14798.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 81/191 (42%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  +   + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESPSTHRVFFIEKMSPDQGHVENVFVTSTEGGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           ++G ++  +     ++L +G  +   P   D  IM+F+ Y ++ +S              
Sbjct: 190 KNGHVETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVNTPTTTGLPT 249

Query: 247 LSFLLNPNPNN 257
           ++ L NP   N
Sbjct: 250 MTLLRNPTNEN 260


>gi|33861942|ref|NP_893503.1| putative permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640310|emb|CAE19845.1| possible permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 19/181 (10%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L + +K+  + +P+ L +  P    + T      ++ N+ELL + + G     +I P + 
Sbjct: 69  LFLAIKVLFFSLPSFLVLSFPMAVLLSTLLAYGKLSANSELLALKSLGIKTSRIIAPAIA 128

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE--ENLFF-----RLDDDL- 157
           ++IL++   F   + + P   + + + + +A +  +FS  E  +N+ F     R++    
Sbjct: 129 VSILMTGLTFYFNDNLVPSS-NKLAESTLRAGIGSSFSSEEGKDNIMFSRYGSRIESATN 187

Query: 158 ----------YIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE 207
                     +I  + +  NN +QG+ ++D       +I  A+S   D +  + I +DG 
Sbjct: 188 KPTKTNTFLTHIFYASWFENNIMQGVTVLDFSRQDIQQILKAKSAVFDKENSSWIFSDGS 247

Query: 208 V 208
           +
Sbjct: 248 I 248


>gi|323525104|ref|YP_004227257.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
 gi|323382106|gb|ADX54197.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIVILIMFFVFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  + + + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESASTHRVFFIEKMSPDQGHVENVFVTSTENGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           ++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES
Sbjct: 190 KNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIES 235


>gi|229495721|ref|ZP_04389449.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229317295|gb|EEN83200.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 9/188 (4%)

Query: 18  MSCLFIVF-IAWVIQILQ----RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
           M  L + F I W + ++Q    R + +        +L+++  +     LP  TP    + 
Sbjct: 18  MPLLVMTFVICWFVVLMQMLWSRADEIVGRGLDTWVLIQLLFHAAVMALPTATPLGILLA 77

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           +      +    ELL + + G     ++ P+  + I + + LF+  N      +    Q+
Sbjct: 78  SVMTFGGLGERLELLAMKSAGVPLYRIMSPLFVVGITIGLALFVYLNTAMMDAQVKFFQI 137

Query: 133 SAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYA 189
              AQ +     + + +F+       L++K  K + N TL  + I D SR +   +I  A
Sbjct: 138 IFSAQQSRPDLEIPQGVFYNQIPGYSLFVK-KKDHENRTLHELMIYDFSRGSSQPRIVLA 196

Query: 190 QSGSIDLD 197
            SG + +D
Sbjct: 197 DSGKLQMD 204


>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 7/148 (4%)

Query: 1   MKSFELYILRCIGRSFLM--SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
           +K  + Y+++     FL   S LF +F+  +I I  ++   +    S   +LK+  YL  
Sbjct: 2   IKKLDGYVIKSFLGPFLFIFSVLFFIFVVNIIWI--QLAQFTGKGLSYWEILKLLAYLSV 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            V+ +V P    + +           EL  +   G S   ++ P+  ++I LS FLF+  
Sbjct: 60  KVVQLVLPLTILLSSIMTFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFS 119

Query: 119 NIIEPKCRSTIKQLS---AKAQLALTFS 143
           N + P  +   K +    A  + AL FS
Sbjct: 120 NNVIPDFQRKAKNMLYNIAATKPALNFS 147


>gi|288572984|ref|ZP_06391341.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568725|gb|EFC90282.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVLPMVT 65
           +IL+ +G SFL   L    I     +L +I +++     SL+ +LK+  Y +P+V+ +  
Sbjct: 9   FILKELGSSFLFGVLTFTVILVAGDLLFKIADMLIEKGVSLSTVLKLFVYKLPSVVVLTL 68

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI-FLFISENIIEPK 124
           P    + T      ++ N+E++ +  +G S   + +PVL  A L++I   F++E ++   
Sbjct: 69  PMSCLLSTLLSFGRLSSNSEIVALKASGISFQRIARPVLLGASLVAISAFFMNETVVPIA 128

Query: 125 CRST--------IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            R+         +KQ   K  L     +L++    +L+  +Y+   +     +++ + + 
Sbjct: 129 NRAAENILMYDVVKQ---KPTLLRERMFLKDESGGKLNRVIYVGRLRTR-KGSMENVLVQ 184

Query: 177 DSRDTQTHKIYYAQSGS 193
           +  D +  +I  A  G+
Sbjct: 185 EFDDGRLSRITTADEGN 201


>gi|225619415|ref|YP_002720641.1| Permease [Brachyspira hyodysenteriae WA1]
 gi|225214234|gb|ACN82968.1| Permease [Brachyspira hyodysenteriae WA1]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL-FISEN 119
              + P      +T VL +  +N E+L I+N+G S      P+  + I L +FL F  E 
Sbjct: 61  TYYIFPVALMFSSTYVLGTFVKNKEMLAIENSGISLFKFSMPMFIIVIGLCLFLVFFWEF 120

Query: 120 IIEP 123
           +  P
Sbjct: 121 VAAP 124


>gi|83721258|ref|YP_441378.1| permease [Burkholderia thailandensis E264]
 gi|167580136|ref|ZP_02373010.1| permease, putative [Burkholderia thailandensis TXDOH]
 gi|257139949|ref|ZP_05588211.1| permease, putative [Burkholderia thailandensis E264]
 gi|83655083|gb|ABC39146.1| permease, putative [Burkholderia thailandensis E264]
          Length = 365

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEHGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQVVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|86150264|ref|ZP_01068491.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597526|ref|ZP_01100760.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562454|ref|YP_002344233.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839380|gb|EAQ56642.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190118|gb|EAQ94093.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360160|emb|CAL34954.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926071|gb|ADC28423.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927714|gb|EFV07043.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 33/297 (11%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALVMIPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                          + F+Y               K  ++     L  +  ++ +D+  +
Sbjct: 125 VFELQDNFVNYKSTQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSDKY 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANSSTI 238
           +  I Y      D   Q II  +  V RK   S   S+ + K Y  +      S    T+
Sbjct: 169 ENIIMYRPKHKADDKEQLIIAKEAHVQRKDD-SFAFSLNQGKMYNFEQGQSIFSGEFDTL 227

Query: 239 VLKA-----NDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           V+       N Q   F    N  N N  R      Y +     L   LF + FGL++
Sbjct: 228 VVNTQFNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLFALCFGLVT 284


>gi|188996313|ref|YP_001930564.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931380|gb|ACD66010.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 336

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC- 125
           F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +I P   
Sbjct: 65  FAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTVIVPSAN 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENL----FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           R   K L+ K +     SY+ EN+    F +++D++ + + K    NT   I I ++ + 
Sbjct: 125 RERYKFLTYKVK-----SYILENVSPKNFSKINDNVSVYVEK-KEKNTFYNILIYNASNG 178

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
               +  A+ G        +IL DG +    P  K    +K++ YT   +
Sbjct: 179 Y---LITAKEGM--FISNNLILKDGYIQL--PSEKSFDTIKYEKYTFSLD 221


>gi|226227978|ref|YP_002762084.1| hypothetical protein GAU_2572 [Gemmatimonas aurantiaca T-27]
 gi|226091169|dbj|BAH39614.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 578

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 1/137 (0%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P  + M  P    + T      M    E+     +G    T++ PVLF A+LLS+F+  
Sbjct: 57  LPFTVAMTLPMAVLVATLYAFGRMAAEHEITAFKASGVRVRTMMLPVLFCALLLSLFMVW 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
             + + P     +  L            L +     + D  ++++++ +   N +  + I
Sbjct: 117 FNDQVLPAANHRLSMLQRDIARTKPTLALRDQALNAITDQFFMRVARTDAETNRMYDVVI 176

Query: 176 VDSRDTQTHKIYYAQSG 192
            D    Q  K  YA SG
Sbjct: 177 YDLSRGQERKTIYADSG 193


>gi|257462589|ref|ZP_05626999.1| hypothetical protein FuD12_01974 [Fusobacterium sp. D12]
 gi|317060240|ref|ZP_07924725.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313685916|gb|EFS22751.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 361

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 15/215 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  ++YI +   + F   L S L I  ++ + ++L+ +N    S   + + +   G L+
Sbjct: 1   MKKLDIYITKNFLKYFSYSLFSFLAIFVLSQIFKVLRYVNEGQLSAGEVPLFI---GNLL 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P ++  V P    +     +  M  N E++ +  +G     L++  + ++  +S+ +F  
Sbjct: 58  PGIIINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPILVSFFISLVVFYL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-- 174
            + + P      ++L  K  +        +EN FFR ++  Y+   K    N  +GI   
Sbjct: 118 NDRVYPGSVVRNRELRGKEDVEERELPKEKENAFFRNEEGRYVYYMK--KINREKGIMDY 175

Query: 175 --IVD-SRD-TQTHKIYYAQSGSIDLDRQAIILND 205
             I+D S D  +  +I  A+ G  D +++  I  +
Sbjct: 176 VEILDMSEDFDKIERIITAKQGKYDFEKKIWIFKE 210


>gi|224373192|ref|YP_002607564.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
 gi|223589644|gb|ACM93380.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
          Length = 323

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 77/184 (41%), Gaps = 16/184 (8%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P VL +     F +   ++    +   EL+ + ++G    TL+KP LFL++LL+I   +
Sbjct: 57  LPKVLFITLSISFFISAVSLFAKHSETQELIALFSSGVKPYTLLKPFLFLSLLLTIVNLL 116

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              I  P  +   K    + Q A  F++    +  R  +      SK     T + I + 
Sbjct: 117 ILFISIPYAKVAFKNFKNQKQQAAKFNFQTSQISQRFGNWNIFTSSK--KGKTYENIILY 174

Query: 177 DSRDTQTHKIYYAQ-------------SGSIDLDRQAIILNDGEVHRKSPISK-DISIMK 222
           ++++ Q     YA+              G++    ++ I+N G++     I K   SI +
Sbjct: 175 NNKENQLILAKYAELKNKNGYLNFELKKGNVYAFDKSTIINFGKMQINQKIPKSSYSIFR 234

Query: 223 FKSY 226
           F  Y
Sbjct: 235 FSEY 238


>gi|19704366|ref|NP_603928.1| hypothetical protein FN1031 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327426|ref|ZP_06869973.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|19714618|gb|AAL95227.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155439|gb|EFG96209.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 359

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL-FISEN 119
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+ F+ E+
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQES 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           II    RS IK      ++A       EN  F+L +  +I
Sbjct: 121 IIP---RSFIKLKYVGTKIAY------ENPVFQLKEKTFI 151


>gi|16125936|ref|NP_420500.1| hypothetical protein CC_1691 [Caulobacter crescentus CB15]
 gi|221234699|ref|YP_002517135.1| hypothetical protein CCNA_01762 [Caulobacter crescentus NA1000]
 gi|13423102|gb|AAK23668.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963871|gb|ACL95227.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 379

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/162 (17%), Positives = 68/162 (41%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           L   +++    +S  + LKI    +P +L ++ P    +     L  ++   E+++    
Sbjct: 33  LSEFDVLVEQRQSALVFLKIILLALPQLLGIMMPLALFVAALVALNRLHTEQEIVVCFAG 92

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G SR  +I P + LA++ ++   IS   ++P     I++ + + +  +  + ++   F  
Sbjct: 93  GMSRWRVISPAMRLAVIAALISLISGLWLQPWSARQIRETAFQIKTDVAATLVQPGQFTE 152

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
               L +     + +N +Q +FI           Y ++   I
Sbjct: 153 PGPGLTVYAQSIDRDNKIQNLFIHQELPNGAASTYSSREAEI 194


>gi|325285312|ref|YP_004261102.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
 gi|324320766|gb|ADY28231.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 115/263 (43%), Gaps = 37/263 (14%)

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
           + +  NTE++ I ++G S    ++P    A +++I +F+    I PK      +      
Sbjct: 60  SKLASNTEIVAILSSGVSFGRFLRPYFMGATIIAILMFVMAMFIVPKASLDYHE------ 113

Query: 138 LALTFSYLEE--------NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
               F YL++        N++ +L+++ ++ IS ++PN  L   F+++  D      Y  
Sbjct: 114 --FIFKYLKKGKKFQETTNIYNQLNENEFLYISSFDPNRQLGSNFVLEHFDNDDKLAYKL 171

Query: 190 QSGSID-LDRQAIILNDGEVHRKSPISKDISIMKFKS-----YTLQTESANSSTIVLKAN 243
            + SI  + +  I    G   R   +  ++ +++ KS     +  + +     + V  A 
Sbjct: 172 TASSIRWIPKDTIYRLTGFTSR--TVKGNVEVIEKKSRLDTIFDFKIDDLTPVSYV--AE 227

Query: 244 DQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
            +N+ F LN    +   +    + TY    +KR   W  PV   +++++A    ++ R+ 
Sbjct: 228 TKNI-FELNKFIEDQRKKGASNINTYVMAKYKR---WALPVSAFILTLIAVSVSSIKRRG 283

Query: 303 KKIHPIFISLSISFGVFWGFSYI 325
                  + L+++FG+   F YI
Sbjct: 284 G------MGLNLAFGIVIAFVYI 300


>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 362

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 8/168 (4%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           +++L+R     S   S  ++ +++ Y  P V   V PF     +   L  ++R  EL++ 
Sbjct: 36  VELLRRAG--DSEGASTGLMAQLALYRTPAVAESVLPFAVLFGSMAALLQLSRKLELVVA 93

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G S    ++P  F+A+ +      + N +    +    ++ AK     T +   ++L
Sbjct: 94  RAAGISAWQFLQPGAFVALAIGALAIGAYNPLSAALKQRSSEIEAKIFAKSTKAGTGKDL 153

Query: 150 FFR---LDDDLYIKI-SKYNPNNTLQG--IFIVDSRDTQTHKIYYAQS 191
           + R   +D    I+  +      TL G  +F  D     T +I  A++
Sbjct: 154 WLRQRSVDGQAIIRAETAVEGTTTLAGVTVFQFDDAGVFTAQIEAARA 201


>gi|239616611|ref|YP_002939933.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505442|gb|ACR78929.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 1466

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 89/200 (44%), Gaps = 5/200 (2%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           + +G  F+    F++F++  + + Q  +L+      ++ L  +  Y +P  + +  P   
Sbjct: 11  QSMGAFFIGLGGFLIFVSLEL-LYQLSDLIVRYKVGIDKLFLLIYYNLPYFIVLGIPVGV 69

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ M  + EL+ +   G +  T++ P +  A+LLS   ++  + I P      
Sbjct: 70  LLAIFWTLSRMQSDNELIALQTHGITLKTVVLPFVIFAVLLSGITYLFNDYIVPYANRKA 129

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYY 188
            +  A+         L+EN F       Y+ I K +P    L+ I + D    +T ++  
Sbjct: 130 YEAQARFIYRRPEVTLKENAFMEDGKGRYLYIKKIDPETGELKKILLYDLSGGKT-RVTS 188

Query: 189 AQSGSIDLDRQAIILNDGEV 208
           A+S + + D+   I++DG V
Sbjct: 189 AKSATKEGDKW--IMHDGRV 206


>gi|326565140|gb|EGE15331.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 103P14B1]
 gi|326572841|gb|EGE22826.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis CO72]
 gi|326573713|gb|EGE23671.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis O35E]
          Length = 437

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 26/227 (11%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+V I    ++++   + +    ++ +L ++ GY  P  L ++ P  F +    V   + 
Sbjct: 76  FLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLY 135

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + E+ +++ +G SR  + + ++ L ++L         + +P        +  +  +A  
Sbjct: 136 TDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQV 195

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--------DSRDTQTHK---IYYA 189
           F  +    F     D ++ + +   N   L+ + I+        D +  Q+H+   I +A
Sbjct: 196 FDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTAEPSDIQSRQSHQRDSIIFA 254

Query: 190 QS--------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +S        G I LD     L  G  +   P S+  S + F+ Y +
Sbjct: 255 KSATHVETGNGQIQLD-----LQQGRRYEVDPTSRQYSQIGFERYRM 296


>gi|115379870|ref|ZP_01466933.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115363129|gb|EAU62301.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 107/259 (41%), Gaps = 25/259 (9%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           YL P  L    P  F M     L  ++ + EL  +   G S + L+   + + +LL+  +
Sbjct: 26  YLTPHFLVKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGPMAIGLLLAGLM 85

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI---KISKYNPNNTLQ 171
            +     +P   +++K+L  +         ++  +F+    DL +   ++S+     T  
Sbjct: 86  ALLAFTAQPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLSDLTLYAERVSREGGEWTH- 144

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSY 226
            + + D R+  +  +  AQ G + + R+      ++L +GEVHR +  + D S+++F+  
Sbjct: 145 -VLLHDDREPSSPLLVLAQRGRVSM-REGDEALRLVLEEGEVHRATRSTADYSLLRFEQG 202

Query: 227 TLQ---TESANSSTIVLKANDQNLS------FLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            +      S N  +   ++  + +S             +  N RP L+       H RL 
Sbjct: 203 EISVGLGGSMNRKSNRFRSQKEEMSPGELIQAAEEAEKSGGNPRPFLM-----AIHMRLG 257

Query: 278 QWLFPVIFGLISIVAADKR 296
             + P+ F L+    A  R
Sbjct: 258 NAVAPLSFALLGTPLAIGR 276


>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 362

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + PFC  +       +++R+ EL++    G S    I P L+ AI + IF   
Sbjct: 60  VPQLLERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATT 119

Query: 117 SENIIEPKCRSTIKQLSAK 135
             N +    +   KQ+ A+
Sbjct: 120 VFNPLSAHMQERAKQMEAE 138


>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
          Length = 361

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 37/79 (46%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + PFC  +       +++R+ EL++    G S    I P L+ AI + IF   
Sbjct: 59  VPQLLERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATT 118

Query: 117 SENIIEPKCRSTIKQLSAK 135
             N +    +   KQ+ A+
Sbjct: 119 VFNPLSAHMQERAKQMEAE 137


>gi|212636934|ref|YP_002313459.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
 gi|212558418|gb|ACJ30872.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
          Length = 352

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 1/181 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI + +  S  +S L +  ++ +I+ + ++ LV   T S+        +LIP  
Sbjct: 1   MRILDLYIAKVLISSSSLSLLILTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IEMFFPMAVLLGALTGMGMLASNSELVVMQSSGLSRLQIALSAMKTAIPLMILVMLLSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++  + Q++           +  D DL++ I     +N L+ I + +  D
Sbjct: 121 VAPVAEVRAKEIQ-RTQISGGSLIESTRGVWAKDGDLFVNIGGVVDSNNLRDITLYEFDD 179

Query: 181 T 181
           T
Sbjct: 180 T 180


>gi|167835784|ref|ZP_02462667.1| hypothetical protein Bpse38_04783 [Burkholderia thailandensis
           MSMB43]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
 gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 79/175 (45%), Gaps = 1/175 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  
Sbjct: 2   IKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPRE 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    
Sbjct: 62  LEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P   +  K++  +A    +  +  + L +  D D ++ I +    +TL+ + I
Sbjct: 122 VAPVSETKAKEIRTQAISGGSL-FSSDRLVWAKDGDNFVSIGEVVDKDTLRDVSI 175


>gi|332704119|ref|ZP_08424207.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554268|gb|EGJ51312.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 396

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 28/214 (13%)

Query: 156 DLYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHR 210
            L I   +Y+P N  ++ IF+ DSR  +T     A+ G +  D++      +LNDG ++R
Sbjct: 163 GLTIFAEQYDPGNKEMRLIFVQDSRGDETSATIVAEKGRVVTDKERGRLQFLLNDGAIYR 222

Query: 211 KSPISKDISIMKFKSY--TLQTESANSSTIVLKANDQNLSFL----LNPNPNNPNYRPE- 263
            +     +  +KF SY   L      ++  + +   + +S +    L  +P+    R E 
Sbjct: 223 TA--KDQVHTLKFVSYLVNLDIWKTFNAEQLSETRPREMSIMNLRRLAADPDLAKKRDED 280

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG---VFW 320
            +     E  KR T  +  ++ GL ++  A     V+Q       ++ + ++ G   V++
Sbjct: 281 YVRKVNVEIQKRYTLPVACLVLGLFALPFACSFQGVKQ-------YVGVLMALGMFIVYY 333

Query: 321 GFSYIIHKIEQNPYYIPILYLFL----FCISSIF 350
               I   + ++ +  P + L+L    F +S+IF
Sbjct: 334 SLYSISISLGESGFLAPWIGLWLPNVIFFVSAIF 367


>gi|326574663|gb|EGE24599.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 101P30B1]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 26/227 (11%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+V I    ++++   + +    ++ +L ++ GY  P  L ++ P  F +    V   + 
Sbjct: 76  FLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLY 135

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + E+ +++ +G SR  + + ++ L ++L         + +P        +  +  +A  
Sbjct: 136 TDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQV 195

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--------DSRDTQTHK---IYYA 189
           F  +    F     D ++ + +   N   L+ + I+        D +  Q+H+   I +A
Sbjct: 196 FDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTAEPSDIQSRQSHQRDSIIFA 254

Query: 190 QS--------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +S        G I LD     L  G  +   P S+  S + F+ Y +
Sbjct: 255 KSATHVETGNGQIQLD-----LQQGRRYEVDPTSRQYSQIGFERYRM 296


>gi|262274978|ref|ZP_06052789.1| putative membrane protein [Grimontia hollisae CIP 101886]
 gi|262221541|gb|EEY72855.1| putative membrane protein [Grimontia hollisae CIP 101886]
          Length = 357

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 52/265 (19%), Positives = 111/265 (41%), Gaps = 19/265 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +    +V ++ +I+ ++++  V   + ++   ++     +P  +
Sbjct: 3   KILDLYIGRTIIATTSLCLATLVGLSAIIKFVEQLRSVGEGSFTMMTAVQYVLLSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAVLLGALIGLGTLASSSELVVMQAAGFSKLDIGLSVLKTAMPLMLVVLALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   ++L A A+       +   ++ +   D +I I++ +   +L G+ I    DT
Sbjct: 123 APDAQKAARELRAFAKSGGNVMSVRRGVWAKDGSD-FIYIARTDQQESLVGVNIWKFDDT 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPIS-----------------KDISIMKF 223
           QT K       +  LD+ + +L +  V H   P+                  + +SI+  
Sbjct: 182 QTLKAQVFAEQARYLDKDSWMLENVTVTHFDGPVKINETTEKQLAWKTTLTPEKLSIVTV 241

Query: 224 KSYTLQTESANSSTIVLKANDQNLS 248
           K   L      S    LKA++Q+ S
Sbjct: 242 KPEELSLSGVYSYVDYLKASEQDAS 266


>gi|119773934|ref|YP_926674.1| hypothetical protein Sama_0797 [Shewanella amazonensis SB2B]
 gi|119766434|gb|ABL99004.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 105/264 (39%), Gaps = 17/264 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MSILDWYIARVLISTSSLCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L  M  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGLGMMAANSELVVMQASGQSRLQITVSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--- 177
           + P       +L A      +       ++ + D DL++ I + +  NTL  I + +   
Sbjct: 121 VAPAAEQRANELKATMISGGSLIKSHRGIWAK-DGDLFVNIGEVSDINTLGNITLYEFDQ 179

Query: 178 ----------SRDTQTHKIYYAQSGS-IDLDRQAIILN--DGEVHRKSPISKDISIMKFK 224
                      R T   K +  Q  S   +  +AI+    D E+ + S     +S++  K
Sbjct: 180 QERLNHVVNARRATFDGKAWQMQGVSKTHITEEAIVREDIDSELWQSSLTPDKLSVVSVK 239

Query: 225 SYTLQTESANSSTIVLKANDQNLS 248
             +L  +        L+ N Q+ S
Sbjct: 240 PESLSIQGLMGYLDYLRINSQDPS 263


>gi|118581150|ref|YP_902400.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118503860|gb|ABL00343.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/232 (18%), Positives = 97/232 (41%), Gaps = 6/232 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           E YI+R I    ++ C  ++ I      ++ +N   +   S   ++ +    +   L ++
Sbjct: 4   ERYIVREICAPLVVICTVLIMIFSGFSAVRFLNDAVNGLLSGGTVVALVSLKVLIALEVL 63

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L+ +  + E+  ++  G S+  LI  VLFLAILL++ +        P 
Sbjct: 64  IPVTLYLAIVLALSRLYADGEITAMEAGGLSQKKLISAVLFLAILLALMVTGLSLHARPW 123

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIV----DSR 179
               +  L  + Q     + +E   F+ L  +L     K +P  N  + +++     + R
Sbjct: 124 AYGKMYLLETRGQNEFDIAKVEAGRFYELSHNLVFFAEKLDPARNQARNVWVWEFGPEKR 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
              + +  +  +G  +  ++AI+  +G  +  +  +    ++ F+   LQ E
Sbjct: 184 RVTSARSAFQTNGPGE-GQKAIVFQEGSHYSLNLKTGTDHLVGFQENVLQLE 234


>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
 gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           S +++   LPM       M    + T+    +E+ +   +G S   ++ PV+ +++LLS 
Sbjct: 57  SAWMVSFALPMAVLVAVVMSFGTLTTT----SEMTVCRASGISLYRVMVPVIVVSLLLSF 112

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTL 170
            +    N++ P+     K L A+   +     L E  F  L D   +Y++ S    +  L
Sbjct: 113 TVERFNNVLLPQANYQAKSLMAEIARSKPAFGLTEQAFSTLVDGYSMYVRSSD-ERHGEL 171

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDL--DRQAII--LNDGEVHR-KSPISKDISIMKFKS 225
           +G+ I D    +      A  G ++   D Q ++  L +G +H+ + P       M F+ 
Sbjct: 172 RGVVIHDMTRPEYRTTITATRGRVEFTPDYQYLVMTLRNGAIHQLQQPEKSGYRSMNFER 231

Query: 226 YTLQTESANSS 236
           Y    ES+ S 
Sbjct: 232 YRFVFESSLSG 242


>gi|237811281|ref|YP_002895732.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181440|ref|ZP_04888037.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|184211978|gb|EDU09021.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|237503123|gb|ACQ95441.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
          Length = 365

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|167718522|ref|ZP_02401758.1| hypothetical protein BpseD_05837 [Burkholderia pseudomallei DM98]
          Length = 365

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEHGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 361

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL--KISGYLIPTVLPMVTPFCFAMET 73
           FL   + +VF+ + I +L+R     S   ++  LL  + S + +P +L  + PFC  +  
Sbjct: 22  FLGLFVLLVFVDY-IDLLRR-----SGGRAIPALLIAQTSMFRVPQLLERLMPFCILIGA 75

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
                +++R  EL++    G S    + P L+ A+LL  F  +  N +    +   KQ
Sbjct: 76  MTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNPVSANLQERAKQ 133


>gi|124025509|ref|YP_001014625.1| putative permease [Prochlorococcus marinus str. NATL1A]
 gi|123960577|gb|ABM75360.1| possible permease [Prochlorococcus marinus str. NATL1A]
          Length = 395

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 18/208 (8%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P+ + +  P    + T     S+N N+E+  + + G S   +I P L L+I +S   FI
Sbjct: 79  LPSFIVISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRIILPGLILSIAMSYMTFI 138

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNT------ 169
             N I P      + + A + L  +F+  + E++ F    ++    S Y  N        
Sbjct: 139 FNNNIVPNTNKNAEIILANS-LGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYA 197

Query: 170 -------LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
                  +  + ++D       ++  A+ G  + D+      +G++   SP   +    K
Sbjct: 198 WKFIDGQMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRT-K 256

Query: 223 FKS--YTLQTESANSSTIVLKANDQNLS 248
           F S  Y L TE  N + +   +ND NL 
Sbjct: 257 FLSFLYPLGTELTNIAQLPKDSNDMNLG 284


>gi|257468007|ref|ZP_05632103.1| hypothetical protein FulcA4_01647 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062293|ref|ZP_07926778.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687969|gb|EFS24804.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 358

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 15/169 (8%)

Query: 1   MKSFELYILRCIGRSFLMSC---LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  E YIL  +    L       FI  I  ++ +++  N++      ++I+  +S YL 
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMME--NIIVKGISIIDIMRILSFYL- 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L    P    +      +   R +E   + + G     ++KP+  LA   ++F+F  
Sbjct: 58  PPILSQTIPMGIFLGVMLTFSKFTRTSEATAMSSIGMDLRGIVKPIFILACATTLFIFFL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYN 165
           +  I P+  S ++ ++ K           EN  F+L +  +I ++ +YN
Sbjct: 118 QESIIPRSFSKLQYITTKIAY--------ENPVFQLKEKTFIDEVEEYN 158


>gi|225619709|ref|YP_002720966.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
 gi|225214528|gb|ACN83262.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
          Length = 417

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 6/185 (3%)

Query: 1   MKSFELYI-LRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIP 58
           MK    YI L  IG  FL   LF  FI +VIQ+L + I L+ ++   L + L++  Y++P
Sbjct: 1   MKKINKYIILETIG-PFLAGILFFTFI-FVIQLLPELIRLIVNNGAPLFMSLEVFVYMLP 58

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    M +      ++ + E++++   G   + +  P++ L +   IF     
Sbjct: 59  FNIAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGVFTFIFSLFFN 118

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVD 177
           N+I  +     + L +   + +  S     L F    D+ + I SKY  + ++  + I D
Sbjct: 119 NVIMSESNYRYRALISY-MVNIKPSIAVGKLEFSDIPDMGLSIGSKYADDTSMSNVVIYD 177

Query: 178 SRDTQ 182
             DT+
Sbjct: 178 RSDTK 182


>gi|296114026|ref|YP_003627964.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|295921720|gb|ADG62071.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
          Length = 396

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/227 (18%), Positives = 93/227 (40%), Gaps = 26/227 (11%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           F+V I    ++++   + +    ++ +L ++ GY  P  L ++ P  F +    V   + 
Sbjct: 35  FLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLELILPLSFFIGLMLVFGRLY 94

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            + E+ +++ +G SR  + + ++ L ++L         + +P        +  +  +A  
Sbjct: 95  TDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAKPWGMERATNIWQEQSVAQV 154

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--------DSRDTQTHK---IYYA 189
           F  +    F     D ++ + +   N   L+ + I+        D +  Q+H+   I +A
Sbjct: 155 FDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTAEPSDIQSRQSHQRDSIIFA 213

Query: 190 QS--------GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +S        G I LD     L  G  +   P S+  S + F+ Y +
Sbjct: 214 KSATHVETGNGQIQLD-----LQQGRRYEVDPTSRQYSQIGFERYRM 255


>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 95/236 (40%), Gaps = 15/236 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-----LVSSSTESLNILLKISGY 55
           MK  + Y++   GR+       ++ I  ++   +R++      + +      +LLKI   
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDSFLDAGLGTGGAVRYLLLKI--- 57

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
             P ++  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++   
Sbjct: 58  --PLIIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGM 115

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN--LFFRLDDDLYIKISKYNPNNTLQGI 173
            S   + P   S + +L  +         +E    +++R  + +Y      +  N L   
Sbjct: 116 ASSQWLLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADF 175

Query: 174 -FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++   RD +  ++ +A   S   D +  +L +G++  K+    D  +  F+   L
Sbjct: 176 SYLTWDRDYRLAQLIFATRAS--WDGRKWLLEEGQLKEKANGDDDFVVDYFERRQL 229


>gi|53718606|ref|YP_107592.1| putative permease [Burkholderia pseudomallei K96243]
 gi|53725611|ref|YP_102446.1| permease [Burkholderia mallei ATCC 23344]
 gi|67640815|ref|ZP_00439609.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|76811087|ref|YP_332585.1| permease [Burkholderia pseudomallei 1710b]
 gi|121601060|ref|YP_993649.1| hypothetical protein BMASAVP1_A2340 [Burkholderia mallei SAVP1]
 gi|124383987|ref|YP_001028889.1| hypothetical protein BMA10229_A2945 [Burkholderia mallei NCTC
           10229]
 gi|126450363|ref|YP_001081198.1| hypothetical protein BMA10247_1654 [Burkholderia mallei NCTC 10247]
 gi|126453581|ref|YP_001065301.1| hypothetical protein BURPS1106A_1021 [Burkholderia pseudomallei
           1106a]
 gi|134281291|ref|ZP_01768000.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167003639|ref|ZP_02269425.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167737554|ref|ZP_02410328.1| hypothetical protein Bpse14_05785 [Burkholderia pseudomallei 14]
 gi|167814688|ref|ZP_02446368.1| hypothetical protein Bpse9_06062 [Burkholderia pseudomallei 91]
 gi|167823142|ref|ZP_02454613.1| hypothetical protein Bpseu9_05663 [Burkholderia pseudomallei 9]
 gi|167844706|ref|ZP_02470214.1| hypothetical protein BpseB_05398 [Burkholderia pseudomallei B7210]
 gi|167893241|ref|ZP_02480643.1| hypothetical protein Bpse7_05715 [Burkholderia pseudomallei 7894]
 gi|167901698|ref|ZP_02488903.1| hypothetical protein BpseN_05425 [Burkholderia pseudomallei NCTC
           13177]
 gi|167909937|ref|ZP_02497028.1| hypothetical protein Bpse112_05556 [Burkholderia pseudomallei 112]
 gi|167917974|ref|ZP_02505065.1| hypothetical protein BpseBC_05423 [Burkholderia pseudomallei
           BCC215]
 gi|217419643|ref|ZP_03451149.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226194506|ref|ZP_03790104.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|242317338|ref|ZP_04816354.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177868|ref|ZP_04884523.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254190839|ref|ZP_04897346.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196871|ref|ZP_04903295.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254199348|ref|ZP_04905714.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254205664|ref|ZP_04912016.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254258333|ref|ZP_04949387.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254357822|ref|ZP_04974095.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52209020|emb|CAH34960.1| putative permease protein [Burkholderia pseudomallei K96243]
 gi|52429034|gb|AAU49627.1| permease, putative [Burkholderia mallei ATCC 23344]
 gi|76580540|gb|ABA50015.1| permease, putative [Burkholderia pseudomallei 1710b]
 gi|121229870|gb|ABM52388.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124292007|gb|ABN01276.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126227223|gb|ABN90763.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126243233|gb|ABO06326.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134247597|gb|EBA47682.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147748944|gb|EDK56018.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147753107|gb|EDK60172.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148026949|gb|EDK84970.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|157938514|gb|EDO94184.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698907|gb|EDP88877.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169653614|gb|EDS86307.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|217396947|gb|EEC36963.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225933591|gb|EEH29580.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|238521610|gb|EEP85060.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|242140577|gb|EES26979.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243060865|gb|EES43051.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254217022|gb|EET06406.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 365

 Score = 39.7 bits (91), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEHGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|312879634|ref|ZP_07739434.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
 gi|310782925|gb|EFQ23323.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
          Length = 337

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 37/199 (18%), Positives = 91/199 (45%), Gaps = 9/199 (4%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           +LV     SL +++++  Y +P V+ +  P    +        ++ N E++ +   G + 
Sbjct: 14  DLVIQRGVSLGVVVRLFLYYLPGVVVLTIPMGSLLAALLGFGRLSANVEIVALKAAGVAF 73

Query: 97  ITLIKPVLFLAILLSIF-LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
             +++PV++ ++L+S+  + ++E ++    R+ +  L  +  +  T    +E +F + + 
Sbjct: 74  QRIVRPVIWASLLVSLGSMALNETLVPLAERAAVNLLRYEV-MQETPPLFKERIFLKEEK 132

Query: 156 DLYIK----ISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR 210
           D ++K    I++  P +  +  I + +  + +  +I  A  G  +  R    + DG+V  
Sbjct: 133 DGHLKRVIYINRMRPRSGKMADILVQEFEEDRLSRIIAAPRG--EWVRGEWWIEDGKVFE 190

Query: 211 KSPISKDISIMKFKSYTLQ 229
                K   +  F+   LQ
Sbjct: 191 VDAQGKVRLLFTFRKQGLQ 209


>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 363

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 12/136 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLIPT 59
           K F + IL      F ++ L I F+ +V ++L+      VS+ T +L  LL+I     P 
Sbjct: 13  KRFAITILGV----FFVTLLLIFFVDFV-EVLRSGARKDVSAGTLALITLLRI-----PI 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              +  PF   + T     S++R +EL I+   G S    ++P L +AI   +F     N
Sbjct: 63  FAELTLPFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVYN 122

Query: 120 IIEPKCRSTIKQLSAK 135
            +    ++  +++ A+
Sbjct: 123 PVASAMKAKSEKIQAE 138


>gi|127511874|ref|YP_001093071.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
 gi|126637169|gb|ABO22812.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 1/180 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R +  +  +  L +  ++ +I+ + +I LV   T ++        +LIP  
Sbjct: 1   MRILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVGRGTYTMVDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR  +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      K+L A  +L+    +      +  D DL++ I +    N+L  I + +  D
Sbjct: 121 GAPVAERHGKELQA-VKLSGGSLFKSSRGIWAKDGDLFVNIGEIEDINSLHNIVLYEFDD 179


>gi|242008257|ref|XP_002424923.1| sodium antiporter, putative [Pediculus humanus corporis]
 gi|212508537|gb|EEB12185.1| sodium antiporter, putative [Pediculus humanus corporis]
          Length = 670

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           P+ I +   FG+ WGF      ++ +P+ IP+  L LFC  +I +L
Sbjct: 376 PVSIIMGFGFGILWGFLSKFVPVKDDPFVIPLRVLLLFCGGTIAVL 421


>gi|317477113|ref|ZP_07936354.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906656|gb|EFV28369.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 12/212 (5%)

Query: 1   MKSFELYILR--CIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLI 57
           +K  +++IL+  C+     M   FI    +++Q L + ++ +      +N+L +   Y  
Sbjct: 4   IKKLDIFILKSFCL---LFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMNVLAQFFFYSA 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
            T++P   P    +       +     ELL +   G S + +++P++F   L+    F  
Sbjct: 61  LTLVPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYF 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGIFI 175
           +N+I PK ++ +  L    +       + E +F+   D  +LY+K  K      L  + I
Sbjct: 121 QNVIGPKAQTKLWTLLVSMKQKSPEVDIPEGVFYDEIDGYNLYVK-HKNRETGMLYDVLI 179

Query: 176 VD-SRDTQTHKIYYAQSGSIDL--DRQAIILN 204
            +  +  +  +I  + SG +++  D+Q + L+
Sbjct: 180 YNFEKGFENAQIIKSDSGRLEMTADKQHLYLH 211


>gi|239948137|ref|ZP_04699890.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922413|gb|EER22437.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 233

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL-DRQAI 201
           S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG++++ D   I
Sbjct: 15  SMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPI 74

Query: 202 I-LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             LN G + ++  ++ +++ + F S  ++ ++ N
Sbjct: 75  FELNKG-IRQEYDVNGNLTQLTFDSLMIKLQNDN 107


>gi|157413956|ref|YP_001484822.1| putative permease [Prochlorococcus marinus str. MIT 9215]
 gi|157388531|gb|ABV51236.1| Permease [Prochlorococcus marinus str. MIT 9215]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 20/196 (10%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           LK+  + +P+ L +  P    + T      ++ N+ELL + + G     +I P + L+I 
Sbjct: 75  LKVLFFSLPSFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIF 134

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE--ENLFF-----RLDDD------ 156
           ++   F   + + PK  + + + + +A +  +FS  E  EN+ F     R++        
Sbjct: 135 MTGLTFYFNDNLVPKS-NKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTK 193

Query: 157 -----LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
                 +I  +++  N  +  + ++D       +I  A S   D    + I + G +   
Sbjct: 194 NYSQLTHIFYAQWYKNKLMGNVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSI 253

Query: 212 SPISKDISIMKFKSYT 227
           +P  +  +I +FK YT
Sbjct: 254 TPSGQTTNI-QFKEYT 268


>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
 gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 367

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           L I F+    Q+  R ++ +S   +L +L        P+++ ++ PFCF          +
Sbjct: 31  LLIQFVELSSQVGTRADVGASGIFALTLLRA------PSLIQILLPFCFLFGGIGAFVGL 84

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           NR +EL+ +   G S    I P   LA +L +
Sbjct: 85  NRKSELVAMRAAGVSAWRFILPSAALAAILGV 116


>gi|253583477|ref|ZP_04860675.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834049|gb|EES62612.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 15/169 (8%)

Query: 1   MKSFELYILRCIGRSFLMSC---LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  E YIL  +    L       FI  I  ++ +++  N++      ++I+  +S YL 
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMME--NIIVKGISIIDIMRILSFYL- 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L    P    +      +   R +E   + + G     ++KP+  LA + ++F+F  
Sbjct: 58  PPILSQTIPMGIFLGVMLTFSKFTRTSESTAMSSIGMDLREIVKPIFILACITTLFIFFL 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYN 165
           +  I P+  + ++ ++ K           EN  F+L +  +I ++ +YN
Sbjct: 118 QESIIPRSFTKLQYITTKIAY--------ENPVFQLKEKTFIDEVDEYN 158


>gi|293393093|ref|ZP_06637408.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
 gi|291424239|gb|EFE97453.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
          Length = 393

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 15/236 (6%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
           N++L +    +P +  ++ P    +     L  +   +E+ ++   G  + TLI   + L
Sbjct: 75  NLVLSLLALGVPKMAQLILPLSLFLGLLMTLGRLYTESEITVMHACGLGKRTLIIAAMVL 134

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP 166
           A+L S+    +   I P   S   ++ A+A+   + + L E  F    D   +       
Sbjct: 135 ALLTSLVAAANVFWIGPWASSHQDEVIAEAKANPSIAGLAEGQFQPSQDGNAVLFVGNVK 194

Query: 167 NNTLQGIFIVDSR--DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIM 221
            NT   +F+   R    Q   +  A+ G I+      Q + L+ G     + + +D  I 
Sbjct: 195 GNTFNNVFLAQLRPNGNQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRIT 254

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
            F  Y  +    + +  +     + +S L     ++        +  R+EFH RLT
Sbjct: 255 DFSDY--KAVVGHRAVAMDNTQAEQMSMLTLWQSDD--------QEARAEFHWRLT 300


>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 359

 Score = 39.3 bits (90), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 25/114 (21%), Positives = 46/114 (40%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           + IP ++    P    + +  V   MNR  E+  + ++G    +L KP   + +   + L
Sbjct: 55  FKIPLIVVQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAVVGVGCCVLL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
            I   I+ P+  S    +  +     T S  ++N  +  DD   + I  Y P  
Sbjct: 115 LIVSEIVVPRTISRANYIWLQQVRQKTSSVDQKNNIWLKDDRTIVHIRHYQPRE 168


>gi|167618242|ref|ZP_02386873.1| permease, putative [Burkholderia thailandensis Bt4]
          Length = 365

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    IL++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVG----WPWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F     +  +  I K +P+   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEHGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ ++    +         
Sbjct: 190 QTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQNKQVVSQPTTTGTST 249

Query: 247 LSFLLNPNPNN 257
              L NP   N
Sbjct: 250 PDLLRNPTNQN 260


>gi|307728896|ref|YP_003906120.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
 gi|307583431|gb|ADN56829.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
          Length = 365

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIIILIMFFVFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  + + + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTENGKLN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           ++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES
Sbjct: 190 KNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVRIES 235


>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
 gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
          Length = 360

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+    ++FI    ++  R++ +   T S  +L+  + + IPT+L    PF        
Sbjct: 21  FLVGIFALIFIIDFSELASRMSALPHYTVSGALLM--TTFRIPTILQQTVPFVALFSAMA 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            L S+NR  EL++    G S    ++P +  A L+ +   ++ N +        + L A+
Sbjct: 79  ALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVALNPLAAWGTKRAEALEAE 138


>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 363

 Score = 39.3 bits (90), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 10  RCIGRSFLMSCL--FIVFIAWVIQILQRINLVSSSTE----SLNILLKISGYLIPTVLPM 63
           R +GR FL   L  F VFI  +I +++ + L+  S +    +  +++ I+   +P +   
Sbjct: 9   RYLGRQFLGVVLLTFGVFIV-LIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIGAQ 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF            ++RN EL++    G S    I P L +A ++  F+    N +  
Sbjct: 68  TLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPVSA 127

Query: 124 KCRSTIKQLSAK 135
              +  +QL +K
Sbjct: 128 TLTTRAEQLESK 139


>gi|123969132|ref|YP_001009990.1| putative permease [Prochlorococcus marinus str. AS9601]
 gi|123199242|gb|ABM70883.1| possible permease [Prochlorococcus marinus str. AS9601]
          Length = 401

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           LK+  + +P+ L +  P    + T      ++ N+ELL + + G     +I P + L+I 
Sbjct: 73  LKVLFFSLPSFLVLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIF 132

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS--YLEENLFF-----RLDDD------ 156
           ++   F   + + PK  + + + + +A +  +FS    +EN+ F     R++ +      
Sbjct: 133 MTGLTFYFNDNLVPKS-NKLAETTLRAGIGSSFSEEKGKENIMFSRYGSRINSETKKPTK 191

Query: 157 -----LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                 +I  S++  N  ++ + ++D       +I  A SG  D    + I ++G +
Sbjct: 192 NNSKLTHIFYSQWYENKIMKNVTVLDFSREDFQQILKANSGRFDKKSSSWIFSNGSI 248


>gi|301058944|ref|ZP_07199913.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446940|gb|EFK10736.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 358

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 121/299 (40%), Gaps = 36/299 (12%)

Query: 41  SSTESLNILLKIS---GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
            ST  L +LL+I+     L+PT L +     F             N E+  +   G S +
Sbjct: 45  GSTVILLVLLRIAISLEVLLPTTLYLSVMIAFG--------RFYMNAEMTGMSACGISMV 96

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD- 156
            ++KPV+ LA+   + +      I P   +   +L   A++    + ++   F+ ++D  
Sbjct: 97  RVLKPVMLLAVTAGMIVACFSLYIRPWAWNQFFELKTGAKVDFDITRMKGGNFYEIEDGE 156

Query: 157 --LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHR 210
             L+     +  +  L  +F+   R  +  +I YA+S +           ++  +G ++ 
Sbjct: 157 RVLFADKVDHGKHRALH-VFMQIKRHGEL-EIVYAESATQRFRNTTPEPVLVFQNGRLYT 214

Query: 211 KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
            S   K   I++F++  +   S N   +  KA   +   L + +       PE L    +
Sbjct: 215 FSETEKTWKILQFRNLEMSLTSNNVEPLKQKAKAFSTEQLWHSD------HPEAL----A 264

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH-PIFISLSISFGVFWGFSYIIHK 328
           E   RLT     ++  L+ +  +  R+  RQ K    P+ I   + F V++  S I  K
Sbjct: 265 ELQWRLTAPFSTILLALLGVPLS--RSFPRQGKYTKVPLGI---LVFAVYYNLSAITKK 318


>gi|300973447|ref|ZP_07172203.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|301048206|ref|ZP_07195242.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299964|gb|EFJ56349.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300410789|gb|EFJ94327.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291259|gb|EFU50619.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 359

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 27/227 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWGASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK----- 222
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K    K+          
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKKWLNGKETQETSDYLAW 226

Query: 223 ---FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
              F S  L+  S   +T  ++  +  + +L      +  YR  L E
Sbjct: 227 QSTFTSMNLEELSMPGNTFSVRQLNHYIHYLQETGQPSSEYRLALWE 273


>gi|255038424|ref|YP_003089045.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
 gi|254951180|gb|ACT95880.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
          Length = 360

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/189 (20%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-------ILLKISGYLIPTVLP 62
           R + ++FL++ +F+ F+  ++ I+  I+      + L+       I++     LIP  + 
Sbjct: 8   RYLIKNFLITYVFVAFV--IVLIICMIDYTEKVDDFLDKKAPLREIIIDYYLNLIPYWIN 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            ++P    + T    + +   TE++ + ++G S   +++P +  A++L I  FI    + 
Sbjct: 66  YISPLMVFIATVFFTSRIAARTEIIAMLSSGISFGRMLRPYMAGAVVLGILTFIQVGWVL 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS-RDT 181
           PK  + I+    K  +   F +   N+   +  D+Y  +  YN        F +++ + T
Sbjct: 126 PKA-NKIRNSFEKTYVKNEFYFSGHNVHITIAPDVYAYLESYNTTTQTGNKFTMETIKGT 184

Query: 182 QTHKIYYAQ 190
           +  + +YA 
Sbjct: 185 KLLQKFYAD 193


>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
 gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
          Length = 355

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/306 (18%), Positives = 127/306 (41%), Gaps = 23/306 (7%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +VF+      LQ I  ++S    L+ ++      +P  L  + P    +     +  ++ 
Sbjct: 22  LVFLFAFFDFLQEIGNLNSGKYDLSKIIVFITLSMPGHLYEIIPLSCLIGAMFTVGQLSG 81

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
           N+EL+++  +G S + +   ++ +++   +  F+  N+I P      +Q+   +      
Sbjct: 82  NSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLITPVSEKNAQQIKISSTDGSVT 141

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQSG-------SI 194
           +  +  ++ + D + ++ I    P+ +L+ I I +   D     I  A+ G        +
Sbjct: 142 TDFKSGVWMK-DGNNFVNIENVLPDASLRNIHIYEFDNDFSLRSIVDAEKGRYENGIWEL 200

Query: 195 DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPN 254
           +  +Q+ IL++G   +  P     S++K        E  N   ++L + D+   F LN  
Sbjct: 201 EKIKQSFILDEGFDVKTLPSGTWKSMIK-------PEMMN---VLLISPDRMSIFDLNDF 250

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            N      +    Y   F +++ Q + P+I     I+ A      ++R     + + L I
Sbjct: 251 INYLKKNNQKTSRYEVSFWEKIIQPVMPIIM----ILFAVPFGFFQERSGGKYLKMFLGI 306

Query: 315 SFGVFW 320
            FG+ +
Sbjct: 307 IFGIIY 312


>gi|255533443|ref|YP_003093815.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
 gi|255346427|gb|ACU05753.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
          Length = 480

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 92/216 (42%), Gaps = 4/216 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L +++   R F ++   ++FI  ++ + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHLLLVKAFIRPFFVTFFIVMFILLMLFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L I L+I  F+    
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGVSLQKAMMPLLVLIIFLAISSFLFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + PK       L    +       ++E +F        I++ K   +  +L  + I D +
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNNSIPGYSIRVDKKGSDGISLHNVMIYDHT 180

Query: 179 RDTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKS 212
            +    KI  A+SG  S + D   + L+DG  + +S
Sbjct: 181 SNNGIAKIIIAKSGKMSKNDDYLLLTLHDGVRYEES 216


>gi|16125010|ref|NP_419574.1| hypothetical protein CC_0757 [Caulobacter crescentus CB15]
 gi|221233731|ref|YP_002516167.1| hypothetical protein CCNA_00794 [Caulobacter crescentus NA1000]
 gi|13421992|gb|AAK22742.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962903|gb|ACL94259.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
          Length = 397

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 18  MSCLFI-VFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           MS + I   +A++++ L R  +L+S +TE L  L ++   L P  + +  P  F +    
Sbjct: 19  MSAVLISTMVAFLMERLMRSFDLLSQTTEGLRYLAELLVNLTPHYVGLTLPGGFFIGLFV 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           V+  +N+++E+  I  +GTS      P + + +LL +   I    ++P  R     +   
Sbjct: 79  VVNGLNKSSEIDAILASGTSLTRFTAPFVAMGVLLMVLSVILFGFVQPYSRYAYHAVLHA 138

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFI 175
           A+ A     +          D ++   + + +   LQ +FI
Sbjct: 139 AENAGWNGDVRPKALLSAGSDFFLTADRTDASGRYLQQVFI 179


>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/236 (18%), Positives = 95/236 (40%), Gaps = 15/236 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-----LVSSSTESLNILLKISGY 55
           MK  + Y++   GR+       ++ I  ++   +R++      + +      +LLKI   
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDNFLDAGLGTGGAVRYLLLKI--- 57

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
             P ++  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++   
Sbjct: 58  --PLIIEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGM 115

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN--LFFRLDDDLYIKISKYNPNNTLQGI 173
            S   + P   S + +L  +         +E    +++R  + +Y      +  N L   
Sbjct: 116 ASSQWLLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADF 175

Query: 174 -FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            ++   RD +  ++ +A   +   D +  +L +G++  K+    D  +  F+   L
Sbjct: 176 SYLTWDRDYRLAQLIFAARAT--WDGRKWLLEEGQLKEKANGDDDFVVDYFERRQL 229


>gi|312884631|ref|ZP_07744334.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367723|gb|EFP95272.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 367

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 9/230 (3%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYL---IPTVL 61
           + I+R + R  L S   I FI +++ + Q+ I +++ +T+       ++ Y+   +P++ 
Sbjct: 1   MIIVRYLIRETLKSQFAIFFILFLVFLSQKLIRVLADATDGDIPASLVANYVALSMPSMG 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +        +   +E+ +++ TG     LIK  L+LAI+  +    +    
Sbjct: 61  LIMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIKAALYLAIITGLLAAANAFFF 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SR 179
            P  ++ +  L  +A        L++  F    D   +          LQ +F+     R
Sbjct: 121 APYSQNQLVHLQEEAAAENNVELLQKGHFQPSPDGSSVVFIDDIDKKKLQNVFVAQLRPR 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           D+    + ++Q G +      RQ I + DG  +   P   D  +  F  Y
Sbjct: 181 DSILPSVSFSQYGEVKELSDGRQVIRMYDGTRYEGIPTRLDYMVTNFDQY 230


>gi|167646492|ref|YP_001684155.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348922|gb|ABZ71657.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 378

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 4/164 (2%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           L   +++    +S  + LKI    +P +L ++ P    +     L  ++   E+++    
Sbjct: 33  LSEFDVLIEQRQSAMVFLKIIALALPQLLSVILPIALFVAALVALNRLHTEQEIVVCFAG 92

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ--LSAKAQLALTFSYLEENLF 150
           G SR  +I P + LA+L ++        + P     I++     K+ LA T   +    F
Sbjct: 93  GMSRWRVISPAMRLAVLATLISLAMSLWVAPWSSRAIRETFFDMKSDLASTL--VRPGEF 150

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
                 L +     + +  +  +FI   +       Y A+SG I
Sbjct: 151 TEPGPGLTVYAQVIDRDQIIHNVFIHQEKPNGAAVTYTARSGVI 194


>gi|258544322|ref|ZP_05704556.1| membrane protein [Cardiobacterium hominis ATCC 15826]
 gi|258520402|gb|EEV89261.1| membrane protein [Cardiobacterium hominis ATCC 15826]
          Length = 350

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+LR I  + L++  F++ + +++QI    + +     +L ILL     ++P  
Sbjct: 1   MTRFDRYLLRTILATSLIALAFLLAVDYIVQISVDADDLGQGNYTLAILLLQLLLVLPEK 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + TP    + T   L  +    E+ ++   G SR+ L +  +  A+++ +   ++   
Sbjct: 61  LLLYTPAAVLIGTIMGLGQLAAQNEIAVVRAAGISRLRLARAGIAFALIVGVLNIVNGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
           + P+     + L  +A    +    E+ ++ +   + +I I   NP+ +L
Sbjct: 121 LAPQLADRSRLLRNQALGQSSDPGREQGIWLK-QQNTHIHIGALNPDGSL 169


>gi|320195129|gb|EFW69758.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 -FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             I E +  P  +  ++  S    L      +   L+ R  ++ ++ +   N      G+
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNE-FVTVKSLNEQGQPVGV 173

Query: 174 FIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
            I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 174 EIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|82701536|ref|YP_411102.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
 gi|82409601|gb|ABB73710.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
          Length = 358

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 58/303 (19%), Positives = 129/303 (42%), Gaps = 28/303 (9%)

Query: 38  LVSSSTESLNILLKISGYLIPTV--LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           L  + T+SL ++  +    + T+  L ++ P    +     L  ++R+ E++++ + G S
Sbjct: 36  LAGAVTDSLGLIPVLRLVFLKTLIALEVLMPIALYVAVIMGLGRLHRDQEIVVLRSAGVS 95

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
              +I  VL +AI + +   +      P        L+A+A+  L         F+  + 
Sbjct: 96  EHRIIYAVLIVAIPMGLISGLFSIFARPWAYEESYLLNAQAEAELNTDRFRAGRFYGSEK 155

Query: 156 D---LYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL---DRQAIILNDGEVH 209
               +Y++ +K +    +  +F   ++   +  I   ++   +L    R  I L DG ++
Sbjct: 156 KGRVIYVQ-AKDSSGKQMGEVFHYLNKHDSSEIILAKKAHQPELVFGQRPQIHLLDGSIY 214

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
           R S   K  ++++F+     T+S N +    KA     + + +  P +            
Sbjct: 215 RLSHTGKGDTVVQFEKLVYFTDSGNVTDYRRKAAS-TAALMQSDQPRDT----------- 262

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           +E   RL++ L  ++  LI++  +  RA  RQ K     +++ ++ F ++    YI+  +
Sbjct: 263 AELQWRLSRPLATILLALIAVPFS--RASPRQTKGDKTYYLA-ALVFAIY----YILSGL 315

Query: 330 EQN 332
            Q 
Sbjct: 316 AQT 318


>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
 gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 27/227 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMK---- 222
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K    K+ + I+     
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKKWLNGKETLEILDNLAW 226

Query: 223 ---FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
              F S  L+  S   ++  ++  +  +++L      +  YR  L E
Sbjct: 227 QSTFTSMNLEELSMPGNSFSVRQLNHYINYLQETGQPSSEYRLALWE 273


>gi|283954397|ref|ZP_06371917.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794014|gb|EFC32763.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 341

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 22/210 (10%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   S   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIQISFLDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P  F +  T  L  +++  E +++   G S + L K  L +A L+S  + +   ++ P 
Sbjct: 65  LPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISALMLVVALVMIPI 124

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTH 184
                        + + F+Y               K  ++     L  +  ++ +D+  +
Sbjct: 125 VFELQDNFVNYKSIQVKFNY---------------KTGEFG-QKFLDWMIFIEKQDSGKY 168

Query: 185 K--IYYAQSGSIDLDRQAIILNDGEVHRKS 212
           +  I Y      D   Q II  +  V RK 
Sbjct: 169 ENIIMYHPKHKADDKEQLIIAKEAHVQRKD 198


>gi|323978946|gb|EGB74026.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|134302362|ref|YP_001122331.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050139|gb|ABO47210.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 351

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 24/221 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI--P 58
           M   + YI R +  SFL+  +    + ++   L +   VS++T +++    I   LI  P
Sbjct: 1   MNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQ---VSNNTANVSNFELIINTLIQLP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +  
Sbjct: 58  GILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVD 177
             I P  +   +Q+          +Y   +L+F+  D  ++ I+   P N    GI    
Sbjct: 118 GYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNIANIEPTNGKAYGIRKFM 168

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
            +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 VQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 209


>gi|323966510|gb|EGB61943.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251763|gb|EGE63449.1| hypothetical protein ECSTEC7V_3615 [Escherichia coli STEC_7v]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGTIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|302338545|ref|YP_003803751.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635730|gb|ADK81157.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 381

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 93/240 (38%), Gaps = 20/240 (8%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           Y +P +L    PF   + T   +   + + E+      G S + L  PV+ L ++LS   
Sbjct: 64  YSLPAILAFTFPFSALLGTVMAIGRFSSDNEITAFRALGVSHLRLFFPVMLLGLILSGIS 123

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           F S +++ P+      +L      +     LE     R  D   + ++    +  +  + 
Sbjct: 124 FFSNDVLLPRGTVQFGRLYRDILYSNPALELEPYAVRRYKDT--VLVTGAISDREISDLV 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMKFKSYTLQ-- 229
           I+D  + Q  ++  A+   ++ D +    I L   EV   +   ++     F + T++  
Sbjct: 182 ILDHDEDQNERMLSAKRAYLEQDEKENGVISLRLEEVFGHTAKKREGDFDYFTADTMEYN 241

Query: 230 ------TESANS------STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
                 T S N+      ST  L    Q +      + N   +    L+ Y+ EF+K+L 
Sbjct: 242 ILLSSFTYSINNLTPREMSTAALYGEIQTMEAKKKEDQNKKRF-DRTLQLYKIEFYKKLA 300


>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
 gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|313203466|ref|YP_004042123.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
           WB4]
 gi|312442782|gb|ADQ79138.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
           WB4]
          Length = 493

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/132 (20%), Positives = 58/132 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI +     FLM+ L  +FI  +  + + ++ +       ++L +   Y I +V
Sbjct: 4   IKKIDSYIFKRFITQFLMTFLICIFILLMQFLWKHVSELIGKGVGWSVLAEFFIYAIFSV 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++  N EL  +   G S   +I+P++     + +  F   N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGENFELTAMKAAGISLFRIIRPLIIFISFVCVGAFFFSNY 123

Query: 121 IEPKCRSTIKQL 132
           + P  ++ +  L
Sbjct: 124 VLPVAQTKLYTL 135


>gi|311281181|ref|YP_003943412.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
 gi|308750376|gb|ADO50128.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
          Length = 366

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/203 (20%), Positives = 79/203 (38%), Gaps = 23/203 (11%)

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ ++   G S+  L+K  + LA+   I   ++     P       ++ A+A+     +
Sbjct: 83  SEITVMHACGLSKAVLVKAAMILALFTGIVAALNVMWAGPWSSRHQDEVLAEAKANPGMA 142

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLDR--- 198
            L +  F +  D   +   +       + +F+   R     +  +  A SG+I   +   
Sbjct: 143 ALAQGQFQQASDGNSVLFIESVDGKKFRDVFLAQIRTKGNARPSVVVADSGNITQQKDGS 202

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTL----QTESANSSTIVLKANDQNLSFLLNPN 254
           Q + LN+G     + + +D  +  FK+Y      QT S + S         N+  L N +
Sbjct: 203 QVVHLNEGTRFEGTAMLRDFRVTDFKNYQAIIGHQTVSLDPS----DTEQMNMLTLWNTD 258

Query: 255 PNNPNYRPELLETYRSEFHKRLT 277
            N            R+E H RLT
Sbjct: 259 TNGA----------RAELHWRLT 271


>gi|291284362|ref|YP_003501180.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764235|gb|ADD58196.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|320656363|gb|EFX24270.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661734|gb|EFX29142.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666885|gb|EFX33861.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 359

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|296162276|ref|ZP_06845070.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
 gi|295887430|gb|EFG67254.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
          Length = 365

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  + + + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTENGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           ++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ +S
Sbjct: 190 KTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQS 235


>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
 gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
          Length = 386

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWVASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|313674434|ref|YP_004052430.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941132|gb|ADR20322.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 357

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L I+ I  VI   ++ +        L  +L   G  IP +
Sbjct: 1   MKILDKYILKKFLSTFVFVVLIILAIVTVIDYTEKNDDFMEHNLGLIDVLPYYGAFIPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++TP    +    V + M  +TE++ +  +G S   L+ P +  A L+++  F     
Sbjct: 61  GNLITPITIFIAAVFVTSKMAGHTEIVAMLASGMSFRRLLVPYMIGAGLVALSSFYLNAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           + P           K ++A   +Y+++  +F  + D+++KI+
Sbjct: 121 VIPDAN--------KTRIAFETAYIKKPFYFT-ERDIHLKIA 153


>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
          Length = 813

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 27/146 (18%)

Query: 7   YILRCIGRSFLM-----SCLFIVF-----IAWVIQILQRINLVSSSTESLNILLKISGYL 56
           YI+R  G +F +     S +F++F     I  +I+   RI  V+     LN        L
Sbjct: 428 YIMREFGATFALVLAAFSMVFLIFTFFELIGDIIR--NRIAFVTVGDYLLN--------L 477

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP +L  VTP C  +       S+ + +E   +  +G S   ++ PVL L  +++  LF 
Sbjct: 478 IPYILYNVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLVLTAVIACSLFA 537

Query: 117 SENIIEPKC-------RSTIKQLSAK 135
            +    P+        RS IK   A+
Sbjct: 538 FDEFYLPQANRRQEALRSVIKGKPAQ 563


>gi|91782195|ref|YP_557401.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
 gi|91686149|gb|ABE29349.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
           LB400]
          Length = 365

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 14/166 (8%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++  ++G S    IKP+   A    IL+  F+F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F        +  I K +P+   ++ +F+  + + + + +  +
Sbjct: 131 IRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTENGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           ++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ +S
Sbjct: 190 KTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQS 235


>gi|126175308|ref|YP_001051457.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|153001630|ref|YP_001367311.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217972441|ref|YP_002357192.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998513|gb|ABN62588.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|151366248|gb|ABS09248.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217497576|gb|ACK45769.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 352

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 1/173 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             P       +L A      +       ++ + D DL++ I +    N L  I
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK-DGDLFVNIGEVENINKLNNI 172


>gi|302338546|ref|YP_003803752.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635731|gb|ADK81158.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 360

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 84/208 (40%), Gaps = 27/208 (12%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +L +LR       +S +F  F+  ++++   +     +  +L  +L  S    P  
Sbjct: 1   MKKLDLMVLRAFFHILFLSLMFFSFVVVLVELFSNLWRYLQNDAALAEILFTSLLYYPKA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISEN 119
           + +  P          L S   N ELL + ++G S +    P++ L+ LLS+   F  E 
Sbjct: 61  ITLALPPSILFAIAFTLGSYQANNELLALFSSGVSLLRFTVPIIVLSALLSVGSYFFQEY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++ PK        SA+ Q+              L D L  + S  N NN    + I+   
Sbjct: 121 LVIPK--------SAQKQI--------------LTDRLSGRSSVGNNNN----VVILSGE 154

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGE 207
               +KI Y  + +  L   ++++ D +
Sbjct: 155 GRFLYKIDYYNAKNRSLTGVSVLIRDSQ 182


>gi|332753041|gb|EGJ83425.1| hypothetical protein SF434370_3220 [Shigella flexneri 4343-70]
 gi|332998924|gb|EGK18515.1| hypothetical protein SFVA6_3889 [Shigella flexneri VA-6]
 gi|333000167|gb|EGK19750.1| hypothetical protein SFK218_4002 [Shigella flexneri K-218]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWVL--HGVNHKK 210


>gi|296125162|ref|YP_003632414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
 gi|296016978|gb|ADG70215.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
          Length = 356

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 48/114 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
              + P      +T VL +  +N E+L I+N+G S      P+  + I+L + L
Sbjct: 61  TYYIFPVALMFASTYVLGTFVKNKEMLAIENSGISLFKFSMPMFVIVIMLCLIL 114


>gi|24114287|ref|NP_708797.1| hypothetical protein SF3026 [Shigella flexneri 2a str. 301]
 gi|30064334|ref|NP_838505.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|24053443|gb|AAN44504.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042591|gb|AAP18315.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|281602370|gb|ADA75354.1| putative permease, YjgP/YjgQ family [Shigella flexneri 2002017]
 gi|313648097|gb|EFS12543.1| hypothetical protein SF2457T_3697 [Shigella flexneri 2a str. 2457T]
 gi|332752655|gb|EGJ83040.1| hypothetical protein SFK671_3613 [Shigella flexneri K-671]
 gi|332754439|gb|EGJ84805.1| hypothetical protein SF274771_3586 [Shigella flexneri 2747-71]
 gi|332765461|gb|EGJ95679.1| hypothetical protein SF293071_3543 [Shigella flexneri 2930-71]
 gi|333014735|gb|EGK34080.1| hypothetical protein SFK304_3819 [Shigella flexneri K-304]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWVL--HGVNHKK 210


>gi|291279033|ref|YP_003495868.1| hypothetical protein DEFDS_0631 [Deferribacter desulfuricans SSM1]
 gi|290753735|dbj|BAI80112.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 344

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/247 (20%), Positives = 101/247 (40%), Gaps = 36/247 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+L+ +   FL+  LF +FI  + +I+    L+ +       + ++    IP+ 
Sbjct: 1   MRITEKYVLKELVPVFLVGNLFFIFILLIDKIVDLSELILAKNVPFFFVAELIIAYIPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP-------VLFLAILLSIF 113
           L +  P    +    V   ++ ++EL+ + + G  +  + KP        L LA+L+S++
Sbjct: 61  LVITIPTSTLLSALIVYGRLSDDSELVAMKSLGADKYNIFKPSILLGFISLVLALLMSLY 120

Query: 114 LFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
           L        PK      +   +    ++ +  +EN  +       +   K    N   G+
Sbjct: 121 LM-------PKGNDFAIERLMQISKYVSINDFKENELYTEIPGFVLYTDKRVDKNKFLGL 173

Query: 174 FIVDSRDTQTHKIYYAQSGSI----------DLDRQAIILNDGEVHRKSPISKDISIMKF 223
            I++ +D   H +  A+ G I          +LD   +I   GE+  K         ++F
Sbjct: 174 IIINKKD---HIVIQAKKGEIVNTTEGSLVFNLDNGVLIDTKGEIPSK---------LEF 221

Query: 224 KSYTLQT 230
           KS+ +  
Sbjct: 222 KSFVVNV 228


>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
 gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
          Length = 386

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWVASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|260845739|ref|YP_003223517.1| hypothetical protein ECO103_3663 [Escherichia coli O103:H2 str.
           12009]
 gi|257760886|dbj|BAI32383.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|113474402|ref|YP_720463.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
 gi|110165450|gb|ABG49990.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
          Length = 392

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 17/226 (7%)

Query: 24  VFIAWVIQILQRINLVSSSTES-LNILLKISGYLI--PTVLPMVTPFCFAMETTNVLTSM 80
           +F +  I +     LV   TES L I + I  +L+  P  + +  P    + T  V + M
Sbjct: 40  LFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPEFIGLAFPMAMILTTLMVYSQM 99

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           + ++E++ + + G S   +I P + L++ ++   F    II P        +  K     
Sbjct: 100 SGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNEIIVPSANYQASLILEKTLEQE 159

Query: 141 TFSYLEENLFF----------RLDDDLYIKI---SKYNPNNTLQGIFIVDSRDTQTHKIY 187
              + EEN+F+             DD   ++    K++    +QG+ I+D       +I 
Sbjct: 160 NPPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFD-GKYMQGVTILDRSQYGVDQIV 218

Query: 188 YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            ++S + +       L +G ++  SP     +I+KF    L+  +A
Sbjct: 219 SSESATWNSAENIWDLFNGTIYLVSPDGSYRNIVKFDHKKLKLSTA 264


>gi|313672806|ref|YP_004050917.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939562|gb|ADR18754.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 345

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 25/158 (15%)

Query: 76  VLTSMNR---NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP--------K 124
           V+T+ NR   + EL+++ + G S ++L+KP ++  IL ++  F++   + P         
Sbjct: 73  VMTAHNRLSSDAELVVMKSLGLSPMSLLKPTIYFGILATLLAFLTSFYLLPYGNKYAIYN 132

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD---- 180
            + T++ +S K         ++EN F++    + I + K   +N    I ++D +     
Sbjct: 133 LKRTVEYVSLKD--------IKENEFYKEIPSIAIYVKKKVDDNKFLQITLIDEKGGSLI 184

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISK 216
           T      Y + G++  DL   AII    + + K    K
Sbjct: 185 TAAEADAYQKFGAVVFDLKNGAIIQGKNDRYGKIEFKK 222


>gi|260857119|ref|YP_003231010.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257755768|dbj|BAI27270.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+  VL   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--VLVAGILWTVSL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 174

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I  D+  ++   G  H+K
Sbjct: 175 IFHYRDDLSLESYIYARSATIKDDKTWVL--HGVNHKK 210


>gi|256019097|ref|ZP_05432962.1| hypothetical protein ShiD9_09284 [Shigella sp. D9]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|191172563|ref|ZP_03034103.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|190907231|gb|EDV66830.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|324011926|gb|EGB81145.1| hypothetical protein HMPREF9533_04084 [Escherichia coli MS 60-1]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWGASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|300993118|ref|ZP_07180204.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
 gi|300305133|gb|EFJ59653.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWGASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|281180020|dbj|BAI56350.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330909040|gb|EGH37554.1| permease Ygh-P2, YjgP/YjgQ family [Escherichia coli AA86]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWGASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|331648770|ref|ZP_08349858.1| putative permease [Escherichia coli M605]
 gi|331042517|gb|EGI14659.1| putative permease [Escherichia coli M605]
          Length = 386

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWGASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|160876366|ref|YP_001555682.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861888|gb|ABX50422.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268556|gb|ADT95409.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 352

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 1/173 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             P       +L A      +       ++ + D DL++ I +    N L  I
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK-DGDLFVNIGEVENINKLNNI 172


>gi|294508120|ref|YP_003572178.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
 gi|294344448|emb|CBH25226.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
          Length = 492

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 10/190 (5%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           +++++++  Y +  ++ +  P    +        +  +    +I +TG S   ++ P L 
Sbjct: 66  VSVIVELIAYNLAYMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALV 125

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
           +A LL   +    N++ P+     +QL +  +       L   +F+   +D  I +    
Sbjct: 126 VAALLMGGMLYFNNVMLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRP 185

Query: 166 PN-NTLQGIFIVD---SRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKD 217
           P  N L  + I D    RD Q   +  A+ G I+      R  + L +GE+HR  P   +
Sbjct: 186 PGTNKLIDVTIYDYTQGRDRQA--VIKAERGVIESSAGGARLTLTLRNGEMHRPLPPDAN 243

Query: 218 ISIMKFKSYT 227
               +++  T
Sbjct: 244 NQSERYERLT 253


>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 365

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           I++++R + ++S+  S  ++ + S + +P +L  + PFC  +       +++R  EL++ 
Sbjct: 37  IEMVRRTSGLASA--SALMVAETSLFRVPQLLEKMMPFCVLIGAMTCYLALSRRLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              G S    I P L  AI+L +      N +    R   K++ A+
Sbjct: 95  RAAGVSAWQFIAPALASAIVLGLMATTLYNPMSANLRELSKRMEAE 140


>gi|332280200|ref|ZP_08392613.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|332102552|gb|EGJ05898.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 386

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 141

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 142 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 201

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 202 IFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|300900316|ref|ZP_07118495.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300356206|gb|EFJ72076.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 315

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 174

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 175 IFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|222034702|emb|CAP77444.1| hypothetical protein LF82_487 [Escherichia coli LF82]
 gi|312947540|gb|ADR28367.1| hypothetical protein NRG857_14785 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWVL--HGVNHKK 210


>gi|170681358|ref|YP_001745244.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|170519076|gb|ACB17254.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKK 210


>gi|326336103|ref|ZP_08202275.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691612|gb|EGD33579.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 137/344 (39%), Gaps = 45/344 (13%)

Query: 1   MKSFELYILRCIGRSFLM-SCLFIVFI--AWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK  + YIL+   R FL  S LF++FI    ++   ++   ++ +      ++K     +
Sbjct: 1   MKIIDRYILK---RYFLTYSALFLMFIPIGILVDFAEKNQKMTDNHAPTEAIIKYYANFV 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                ++ P    +      + +   TE++ + ++G S    ++P  + A +LS+F+ I 
Sbjct: 58  IHFANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLIM 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-------LDDDLYIKISKYNPNNTL 170
              + P       +           +YL  NL+ +       ++ + YI +S ++ NN  
Sbjct: 118 GMFVVPYSSGVYNEFYG--------TYLSPNLYSKGSRLYNQVNKNEYIYVSSFDANNNQ 169

Query: 171 QGIFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT- 227
              F+++  D    T KI  +    I+ D           HRK     DI     +  T 
Sbjct: 170 GSDFVLERFDGLKMTDKITASNIQWIENDSIKTYRLSYYTHRKVGEFDDIYEQVIQKDTL 229

Query: 228 LQTESANSSTIVLKANDQNLSFLLNP------NPNNPNYRPELLETYRSEFHKRLTQWLF 281
           L  ++ +   I   A  +N  F LN          +PN R      Y   +++R      
Sbjct: 230 LNFKTTDLLPIEYAAETKNF-FELNKFIAEERQKGSPNIR-----IYELVYYRRWAAIFN 283

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
             I  +I +  +     V++R       + ++++FGV  GFSY+
Sbjct: 284 VFILTIIGVAVSS----VKKRGG-----MGVNLAFGVLIGFSYV 318


>gi|300931863|ref|ZP_07147160.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331664593|ref|ZP_08365499.1| putative permease [Escherichia coli TA143]
 gi|300460286|gb|EFK23779.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331058524|gb|EGI30505.1| putative permease [Escherichia coli TA143]
          Length = 359

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKK 210


>gi|298374434|ref|ZP_06984392.1| permease [Bacteroides sp. 3_1_19]
 gi|298268802|gb|EFI10457.1| permease [Bacteroides sp. 3_1_19]
          Length = 651

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 19  FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 74

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  +  +  
Sbjct: 75  ASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVKLYT 134

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-SRDTQTHKIYYA 189
           L    +       + E  F++      + + K +P +  L+ + I D S      ++  A
Sbjct: 135 LLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNARVIVA 194

Query: 190 QSGSI 194
            SG +
Sbjct: 195 DSGRL 199


>gi|150010074|ref|YP_001304817.1| hypothetical protein BDI_3493 [Parabacteroides distasonis ATCC
           8503]
 gi|256838884|ref|ZP_05544394.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149938498|gb|ABR45195.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256739803|gb|EEU53127.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 651

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 19  FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 74

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  +  +  
Sbjct: 75  ASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVKLYT 134

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-SRDTQTHKIYYA 189
           L    +       + E  F++      + + K +P +  L+ + I D S      ++  A
Sbjct: 135 LLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNARVIVA 194

Query: 190 QSGSI 194
            SG +
Sbjct: 195 DSGRL 199


>gi|86131956|ref|ZP_01050553.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
 gi|85817778|gb|EAQ38952.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
          Length = 552

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 1/169 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI     ++FL     ++FI  +  +   I  ++      +++LK   + +P++
Sbjct: 1   MKILDRYIFFTFVKTFLSIFTILMFIFVLQSVWLYIQELAGRDLDFDVILKFLLFAMPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +     +   N E   + +TG S    +K V+F  I L I  F+  N 
Sbjct: 61  VTLVLPLSVLLTSIMTFGNFAENYEFAAMKSTGISLQRAMKSVIFFIIFLGIASFLFANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNN 168
           + P  +   + L            +    F  + DD  ++++ KY   +
Sbjct: 121 VIPASQYEFRNLRNNIGKMKPAMLIRSGQFNEVGDDFNMRVAEKYGDRD 169


>gi|301308106|ref|ZP_07214060.1| putative permease [Bacteroides sp. 20_3]
 gi|300833576|gb|EFK64192.1| putative permease [Bacteroides sp. 20_3]
          Length = 651

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 19  FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 74

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  +  +  
Sbjct: 75  ASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVKLYT 134

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-SRDTQTHKIYYA 189
           L    +       + E  F++      + + K +P +  L+ + I D S      ++  A
Sbjct: 135 LLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNARVIVA 194

Query: 190 QSGSI 194
            SG +
Sbjct: 195 DSGRL 199


>gi|301017326|ref|ZP_07182090.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300400299|gb|EFJ83837.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKK 210


>gi|188994506|ref|YP_001928758.1| hypothetical protein PGN_0642 [Porphyromonas gingivalis ATCC 33277]
 gi|188594186|dbj|BAG33161.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 651

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 12/205 (5%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRI-----NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           ++FL   L    I W + ++Q +     ++V     ++ IL K+  Y   T++PM  P  
Sbjct: 15  QTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAI-ILSKMLFYAAMTLVPMALPLG 73

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     ++    ELL + + G     ++KP+ F  + ++  LFI +N +  + +  
Sbjct: 74  VLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQNDLMIQSQVK 133

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTHKI 186
              +   A+ A     + E  F+       + ++K +     L  + I D S+     +I
Sbjct: 134 FYTILFSARRATPELEIPEGSFYNGIHGYNLFVAKKDRRTGMLHDMMIYDHSQGFADARI 193

Query: 187 YYAQSGSIDLDRQ----AIILNDGE 207
             A SG + +D       ++L+ GE
Sbjct: 194 IVADSGKLKMDEGKTFLTLMLHSGE 218


>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
 gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 360

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 21/198 (10%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+    ++FI    ++  R++ +   T S  +L+  + + IPT+L    PF        
Sbjct: 21  FLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLM--TTFRIPTILQQTVPFVALFAAMA 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA- 134
            L S+NR  EL++    G S    ++P +  A+L  +   +   +I P      K+  A 
Sbjct: 79  ALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVV---VINPLAAWGTKKAEAL 135

Query: 135 KAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ---THKIYYAQ 190
           +A+   T S    ++ + R           Y+  +T+ G   V +  T+      I++  
Sbjct: 136 EAEWGSTRSAAANSIPWLR---------QIYDGTDTIIGARSVQNGGTELINVTVIHFDP 186

Query: 191 SGSIDL--DRQAIILNDG 206
            G+I L  D ++  L DG
Sbjct: 187 QGAITLRQDAKSAKLEDG 204


>gi|293416424|ref|ZP_06659063.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
 gi|291431780|gb|EFF04763.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 115 GAIDEWVASPLQQQAMQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 174

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 175 IFHYRDDLSLESYIYARSATIKDDKMWIL--HGVNHKK 210


>gi|194431684|ref|ZP_03063975.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|194420040|gb|EDX36118.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|320180990|gb|EFW55911.1| Permease Ygh-P2, YjgP/YjgQ family [Shigella boydii ATCC 9905]
 gi|332086635|gb|EGI91775.1| hypothetical protein SB521682_3569 [Shigella boydii 5216-82]
 gi|332088218|gb|EGI93339.1| hypothetical protein SD15574_3351 [Shigella dysenteriae 155-74]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWVL--HGVNHKK 210


>gi|110643218|ref|YP_670948.1| putative permease [Escherichia coli 536]
 gi|47155053|emb|CAE85252.1| putative permease [Escherichia coli]
 gi|110344810|gb|ABG71047.1| putative permease [Escherichia coli 536]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKS-------PISKDISI 220
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K          S +++ 
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKKWLNGKETLETSDNLAW 226

Query: 221 M-KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
              F S  L+  S   +T  ++  +  + +L      + +YR  L E
Sbjct: 227 QSAFTSMDLEELSMPGNTFSVRQLNHYIHYLQETGQPSSDYRLALWE 273


>gi|83816098|ref|YP_446193.1| hypothetical protein SRU_2087 [Salinibacter ruber DSM 13855]
 gi|83757492|gb|ABC45605.1| membrane protein, putative [Salinibacter ruber DSM 13855]
          Length = 473

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 10/176 (5%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           +++++++  Y +  ++ +  P    +        +  +    +I +TG S   ++ P L 
Sbjct: 47  VSVIVELIAYNLAYMVVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALV 106

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
           +A LL   +    N++ P+     +QL +  +       L   +F+   +D  I +    
Sbjct: 107 VAALLMGGMLYFNNVMLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRP 166

Query: 166 PN-NTLQGIFIVD---SRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSP 213
           P  N L  + I D    RD Q   +  A+ G I+      R  + L +GE+HR  P
Sbjct: 167 PGTNKLIDVTIYDYTQGRDRQA--VIKAERGVIESSAGGARLTLTLRNGEMHRPLP 220


>gi|285019432|ref|YP_003377143.1| permease [Xanthomonas albilineans GPE PC73]
 gi|283474650|emb|CBA17149.1| putative yjgp/yjgq family permease protein [Xanthomonas
           albilineans]
          Length = 361

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 12/184 (6%)

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           R++E+ +I   G     L++P+L L + +   + +    + P    T  QL  +A  +L 
Sbjct: 82  RDSEMAVITAIGVGPRRLLRPILMLVVPVVTLVGLCSLWLGPWADRTSDQLVNEANHSLL 141

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
            + LE   F  L D   + +S  + + T L  +F+   +D +   +   Q G++  + +A
Sbjct: 142 MAGLEAGRFTSLPDGSIVYVSTLSGDGTRLSKVFVQRQKDGRLD-VVTGQRGAMFFEGKA 200

Query: 201 ---IILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNL----SFLLN 252
              + L DG  +R + P++ D    +   +     + +  +   K +D  L    + + +
Sbjct: 201 ERYLRLEDG--YRFEGPLAGDGLDYRMMRFANNDVALSERSAARKDDDPALLTTAALIGD 258

Query: 253 PNPN 256
           P P 
Sbjct: 259 PRPQ 262


>gi|255012652|ref|ZP_05284778.1| hypothetical protein B2_02000 [Bacteroides sp. 2_1_7]
          Length = 641

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 9   FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 64

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  +  +  
Sbjct: 65  ASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVKLYT 124

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-SRDTQTHKIYYA 189
           L    +       + E  F++      + + K +P +  L+ + I D S      ++  A
Sbjct: 125 LLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNARVIVA 184

Query: 190 QSGSI 194
            SG +
Sbjct: 185 DSGRL 189


>gi|218701754|ref|YP_002409383.1| hypothetical protein ECIAI39_3474 [Escherichia coli IAI39]
 gi|227887686|ref|ZP_04005491.1| inner membrane protein [Escherichia coli 83972]
 gi|301019929|ref|ZP_07184064.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371740|emb|CAR19591.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835082|gb|EEJ45548.1| inner membrane protein [Escherichia coli 83972]
 gi|299882027|gb|EFI90238.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555074|gb|ADN47849.1| putative permease [Escherichia coli ABU 83972]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKK 210


>gi|194436708|ref|ZP_03068808.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|256024435|ref|ZP_05438300.1| hypothetical protein E4_13754 [Escherichia sp. 4_1_40B]
 gi|194424190|gb|EDX40177.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S SI+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSASIEDDKTWIL--HGVNHKK 210


>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 360

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 119/280 (42%), Gaps = 26/280 (9%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP ++    P    M T   L +++  +EL  I + G S   +  P+L +++L+S+ +  
Sbjct: 57  IPEMIIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLA 116

Query: 117 SENIIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQG 172
               + PK    R+ I+++  + + A  F + ++N++FR ++   ++ S + P  N L+G
Sbjct: 117 IGEFVLPKSFAQRTYIQEVLIQKKSASAF-FRQQNIWFR-EEGTVLRASLFEPARNELKG 174

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH--RKSPISKDISIMKFKSYTLQT 230
           I + D +      +   ++    L  +  +L D  V   R   +S   +  K++   +Q 
Sbjct: 175 ITLWDLQPGTGEPLKRTEADLALLGPKGWVLRDAVVRQFRDGEVS---ATQKYRELPVQL 231

Query: 231 ESANSSTIVLKANDQNLSFL-LN---PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           +   +    L     ++S + LN          Y P     Y ++ H R++      +  
Sbjct: 232 QLKPADLKTLGKYSDSMSLVELNRYCRKLRASGYDP---TRYVTQMHSRISMPFGCAVMA 288

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
            + I  A +        +   I   + +S GV  GF Y+I
Sbjct: 289 FLGIPFALRGG------RSSGIAFGVGLSIGV--GFLYVI 320


>gi|219871563|ref|YP_002475938.1| permease [Haemophilus parasuis SH0165]
 gi|219691767|gb|ACL32990.1| permease, inner membrane protein yjgP [Haemophilus parasuis SH0165]
          Length = 366

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 11/226 (4%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES----LNILLKISGYLIPTVLPMVT 65
           R + +    S + I+FI  VI   Q++  V SS  S     +++L + G  +PT+  ++ 
Sbjct: 5   RYLTKEIFKSQIAILFILLVIFFCQQLVRVLSSAVSGKVPTDLVLSLLGLGMPTMAQLML 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L      +E+ ++   G  +  L+K  LFL+I  +     +   + P  
Sbjct: 65  PLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVFWLTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
            +   ++ A+A+    F+ L    F       Y+       +NT+  I++      + +K
Sbjct: 125 INKQSEMLAEAKANPRFAALAAGQFMSAGG--YVLFIDNIKDNTINDIYVFQPEQQKKNK 182

Query: 186 --IYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSY 226
             +  A+SG +       Q + L +   +  +P + D  I  F +Y
Sbjct: 183 PSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNY 228


>gi|293406596|ref|ZP_06650522.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382335|ref|ZP_06991932.1| predicted protein [Escherichia coli FVEC1302]
 gi|291426602|gb|EFE99634.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277475|gb|EFI18991.1| predicted protein [Escherichia coli FVEC1302]
          Length = 342

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 141

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 142 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 201

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 202 IFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|160887737|ref|ZP_02068740.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|317478670|ref|ZP_07937825.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
 gi|156862768|gb|EDO56199.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|316905181|gb|EFV26980.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
          Length = 633

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 65/353 (18%), Positives = 143/353 (40%), Gaps = 33/353 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPT 59
           +K  ++++L+     F M   FI    +++Q L R ++ +      + +L +   Y   +
Sbjct: 4   IKKLDIFVLKSFCMLF-MGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALS 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++P   P    +       +     ELL +   G S + +++P++     +    F  +N
Sbjct: 63  LVPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGIFIVD 177
           +I PK ++ +  L    +       + E +F+   D  +LY+K  K      L  + I +
Sbjct: 123 VIGPKAQTKLWTLLISMKQKSPEVDIPEGVFYDEIDGYNLYVK-HKNRKTGMLYDVLIYN 181

Query: 178 -SRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEV---------------HRKSPISKD 217
             +  +  +I  + SG +++  D+Q + L+   GE                +R+    + 
Sbjct: 182 FEKGFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFREK 241

Query: 218 ISIMKFKS------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR-- 269
            +I++F S        + +  +NS  + +   D +   L N +     Y+  +  TY+  
Sbjct: 242 HAIIEFNSDFNMVDAGIMSNQSNSKDMRMLQADIDSMKLQNDSVGRGYYKEAMAGTYKVT 301

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +   K  T  +     G  ++ +    A + Q++K+    +S + S G  W F
Sbjct: 302 ASLSKEDTLKIEKAYLGEYNVDSLYNVATLMQKQKVISTAVSRAESAGSDWSF 354


>gi|301325677|ref|ZP_07219138.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847532|gb|EFK75292.1| conserved hypothetical protein [Escherichia coli MS 78-1]
          Length = 359

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  + +N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLAKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|167752154|ref|ZP_02424281.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
 gi|167660395|gb|EDS04525.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
          Length = 492

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 107/239 (44%), Gaps = 12/239 (5%)

Query: 20  CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             FI+    ++ +L R I+ +         ++++  Y    ++PM  P    +     + 
Sbjct: 19  TFFIIMFVLMMNVLWRYIDELVGKGLDPGTIIELLCYATINMIPMALPLATLLAAIMTMG 78

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF-LFISENIIEPKCRSTIKQLSAKAQ 137
           ++  N ELL + + G S   +++P+L +  +L++   FI+ N++    +   + +    Q
Sbjct: 79  NLGENYELLAMKSAGMSLPKIMRPLLVVVSILAVGSFFIANNLVPYANKKFFRTIYDIRQ 138

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTH-KIYYAQSGSID 195
           +  T  + ++ LFF   D + I++   N     L  + I D+R+   +     A SG I 
Sbjct: 139 MNQTLEF-QDGLFFNGIDGMSIRVGHQNQETGLLTDVLIYDNRNASGNMTTTVADSGYIR 197

Query: 196 L--DRQ--AIILNDGEVH---RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNL 247
           L  D++   I L +GE +   R S    + S ++   + LQ  + + S   ++  D +L
Sbjct: 198 LSDDKRFLEITLFNGERYEQTRNSSQWYNKSSLQRNKFELQKANISISGFEMQRTDADL 256


>gi|194426241|ref|ZP_03058796.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415549|gb|EDX31816.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183222|dbj|BAG66767.1| putative permease [Escherichia coli O111:H-]
          Length = 285

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N      G+ 
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVE 174

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
           I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 175 IFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|262382624|ref|ZP_06075761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295502|gb|EEY83433.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 658

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 19  FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 74

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  +  +  
Sbjct: 75  ASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQVKLYT 134

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-SRDTQTHKIYYA 189
           L    +       + E  F++      + + K +P +  L+ + I D S      ++  A
Sbjct: 135 LLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNARVIVA 194

Query: 190 QSGSI 194
            SG +
Sbjct: 195 DSGRL 199


>gi|325267813|ref|ZP_08134463.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
 gi|324980694|gb|EGC16356.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
          Length = 374

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----KCR 126
           + T  VLT   R++E+ I  ++G      +KPV+  A+ L + + + +  + P    + R
Sbjct: 70  ISTLTVLTRYWRDSEMAIWLSSGLGLRQWVKPVMTFALPLMLLIAVLQIFVLPWAELRSR 129

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRL---DDDLYIKISKYNPN-NTLQGIFIVDSRDTQ 182
              + L  K  L+L    +E+  F  L   +  +Y  + +++ +   L  +F+ +  D  
Sbjct: 130 EYAELLKQKQNLSL----VEQGKFTELGKKNGRIYF-VEQFDAHAGQLNHLFLREIGDDG 184

Query: 183 THKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            +++ +A+SG   L+     + ++L++G  +  +    D   + FK   L T +
Sbjct: 185 KNQVIFAESGQFTLEGSDQHRTLVLHNGYRYLGNAGQGDFEQIAFKELRLATNT 238


>gi|78184805|ref|YP_377240.1| permease [Synechococcus sp. CC9902]
 gi|78169099|gb|ABB26196.1| possible permease [Synechococcus sp. CC9902]
          Length = 384

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP+ L +  P      T    + ++ N+EL  + + G S I L+ P L L+ILL+   F+
Sbjct: 68  IPSFLVLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTIRLVVPALALSILLTGLTFV 127

Query: 117 SENIIEPKC 125
             ++I P+ 
Sbjct: 128 FNDVIVPRA 136


>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
 gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
          Length = 365

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 93/209 (44%), Gaps = 10/209 (4%)

Query: 7   YILRCIGRSFLMSCLF--IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           +I + +  SF+   +   +VF+A  + + Q  +++     S+ ++L++  Y +P V+ + 
Sbjct: 10  FIWKEMAGSFVFGVMAFTMVFVAGDL-LFQIASMIIEKGISIGVVLRLFIYSLPEVIILT 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        ++ N+E++ +  +G S   ++KPV+  ++L+ +   I    + P 
Sbjct: 69  LPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGLSALILNETVVPF 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNP-NNTLQGIFIVDSR 179
                + L     +    S L+E +F R +     +  I I K  P   T+  + + +  
Sbjct: 129 SNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMTNVLVQEFE 188

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
             +  +I   ++G     +  I  +DGEV
Sbjct: 189 KGKLKRITVGKTGLWKDGKWWI--DDGEV 215


>gi|149280024|ref|ZP_01886149.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
 gi|149229221|gb|EDM34615.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
          Length = 472

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 90/216 (41%), Gaps = 4/216 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   + +L+   R F ++   ++FI  +  + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHVLLLKAFIRPFFVTFFIVMFILLMFFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L   +SI  F   + 
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGISLQKAMMPLLVLITCISISSFFFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + PK       L    +       ++E +F     +  I++ K   +  TL  + I D +
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNSSIPNYSIRVDKKGADGVTLHNVMIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKS 212
            +    KI  A+ G +  D + ++  L DG  + +S
Sbjct: 181 SNNGIAKIIIAKEGKMASDDKYLLLKLKDGVRYEES 216


>gi|306816678|ref|ZP_07450810.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|331659261|ref|ZP_08360203.1| putative permease [Escherichia coli TA206]
 gi|305850243|gb|EFM50702.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|315297644|gb|EFU56921.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053843|gb|EGI25872.1| putative permease [Escherichia coli TA206]
          Length = 359

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 -FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             I E +  P  +  ++  S    L      +   L+ R  ++ ++ +   N      G+
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNE-FVTVKSLNEQGQPVGV 173

Query: 174 FIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
            I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 174 EIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 210


>gi|24213806|ref|NP_711287.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24194638|gb|AAN48305.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 631

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LPM
Sbjct: 132 LDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLPM 191

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
             P    M        ++ ++E+  I + G S
Sbjct: 192 TIPMACLMSGIMAAGRLSGDSEITAIRSAGVS 223


>gi|237736826|ref|ZP_04567307.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420688|gb|EEO35735.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 358

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 12/145 (8%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           FI  I  ++ +++  N++      ++++  +S YL P +L    P    +      +   
Sbjct: 25  FIFLIDIIVAMME--NIIVKGISIIDVMRILSFYL-PPILSQTIPMGMFLGIMLTFSKFT 81

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           R +E   +   G S   ++KP+   A  +++F+F  +  I P+  + ++ L+AK      
Sbjct: 82  RTSEATAMSAVGMSLRDIVKPIFVAACCVTLFIFFLQESIIPRSVAKLQFLTAK------ 135

Query: 142 FSYLEENLFFRLDDDLYI-KISKYN 165
            +Y  EN  F+L +  +I ++ +YN
Sbjct: 136 IAY--ENPVFQLKEKTFIDEVDEYN 158


>gi|45658408|ref|YP_002494.1| hypothetical protein LIC12569 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601651|gb|AAS71131.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 631

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LPM
Sbjct: 132 LDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLPM 191

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
             P    M        ++ ++E+  I + G S
Sbjct: 192 TIPMACLMSGIMAAGRLSGDSEITAIRSAGVS 223


>gi|57167826|ref|ZP_00366966.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
 gi|57020948|gb|EAL57612.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
          Length = 341

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   +   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFADLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
            P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   ++ P
Sbjct: 65  LPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALVMIP 123


>gi|34540406|ref|NP_904885.1| hypothetical protein PG0598 [Porphyromonas gingivalis W83]
 gi|34396719|gb|AAQ65784.1| hypothetical protein PG_0598 [Porphyromonas gingivalis W83]
          Length = 651

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 12/205 (5%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRI-----NLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           ++FL   L    I W + ++Q +     ++V     ++ IL K+  Y   T++PM  P  
Sbjct: 15  QTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAI-ILSKMLFYAAMTLVPMALPLG 73

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +     ++    ELL + + G     ++KP+ F  + ++  LFI +N +  + +  
Sbjct: 74  VLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQNDLMIQSQVK 133

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-SRDTQTHKI 186
              +   A+ A     + E  F+       + ++K +     L  + I D S+     +I
Sbjct: 134 FYTILFSARRATPELEIPEGSFYNGIRGYNLFVAKKDRRTGMLHDMMIYDHSQGFADARI 193

Query: 187 YYAQSGSIDLDRQ----AIILNDGE 207
             A SG + +D       ++L+ GE
Sbjct: 194 IVADSGKLKMDEGKTFLTLMLHSGE 218


>gi|167622904|ref|YP_001673198.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
 gi|167352926|gb|ABZ75539.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
          Length = 352

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 3/184 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  ++ L +  ++ +I+ + ++ LV   T ++        +LIP  
Sbjct: 1   MRILDFYIARTLISTSSLALLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ + G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITMSAMKTAIPLMIIVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P      K++  K       S ++ N   +  D DL++ I      N L+ I + +  
Sbjct: 121 VAPVAELRAKEI--KRTNISGGSLIDSNRGIWAKDGDLFVNIGGAADINNLRDITLYEFD 178

Query: 180 DTQT 183
           DT T
Sbjct: 179 DTTT 182


>gi|269468373|gb|EEZ80038.1| permease [uncultured SUP05 cluster bacterium]
          Length = 360

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 74/163 (45%), Gaps = 1/163 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + + +  L   + +V I    + L+ +  +  ++ +L   L   G LIP++
Sbjct: 1   MKILDRYIAKTLLKYSLSVMVVLVGIFAFFKFLEEVGDIGRASYTLFDALAYVGLLIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  ++     +     L  +  N+EL+I+   G S + + K  L ++++  + + I    
Sbjct: 61  VYALSSLIILLGCILGLGYLAGNSELIIMRGAGISVVEITKTTLKVSLVFIVIMIIFGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
           I P      K+  A+A      S  ++  + R D + +I++ K
Sbjct: 121 ISPLFSDYAKKYRAQALGESVISSSQQGFWLR-DGNNFIQVDK 162


>gi|218691270|ref|YP_002399482.1| hypothetical protein ECED1_3629 [Escherichia coli ED1a]
 gi|218428834|emb|CAR09635.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
          Length = 386

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 141

Query: 115 -FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             I E +  P  +  ++  S    L      +   L+ R  ++ ++ +   N      G+
Sbjct: 142 GAIDEWVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNE-FVTVKSLNEQGQPVGV 200

Query: 174 FIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
            I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 201 EIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 237


>gi|117925962|ref|YP_866579.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
 gi|117609718|gb|ABK45173.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
          Length = 392

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 117/271 (43%), Gaps = 20/271 (7%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           QIL  ++L  + + S+++L K+   ++P  L    P    +     L  + +++EL++I 
Sbjct: 31  QILMLVDLWVNKSVSVSVLGKMVLLIMPKFLVASLPMALLVGILIGLGRLAQDSELIVIK 90

Query: 91  NTGTSRITLIKPV-LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
            +G S + +  P+ + + ++ +  L+++  ++ P   +  + +        TFS ++   
Sbjct: 91  ASGISLLRIFYPLSVPIVVVTACSLYLNWFLV-PDSHTLFQNIRVALLSQNTFS-IKTQT 148

Query: 150 FFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSI---DLDRQAIILND 205
           F      L I +++ +     L+G+ I D RD        A+SG +        A++L +
Sbjct: 149 FNNTIPGLTIYVNRQSHGGKLLEGLLIHDERDPDMPVTVIAKSGMLHRGSTGETALLLKE 208

Query: 206 GEVHRKSPISKDISIMKFKSYTL------QTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
           G  H+ +P       + F +Y L      +TES++    +   +  +L            
Sbjct: 209 GSRHQMAP-GNAYRRLNFSTYDLELGIAFETESSSGDRAIRSYSIADL------EQARIA 261

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             P L      E+H+R    L  ++ G ++I
Sbjct: 262 QDPLLASEAEREWHRRFAIPLATLLLGFLAI 292


>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
 gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
          Length = 365

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            LY  R    +FLM  LF+ F I ++I +++++   SS++  +    +++    P  L  
Sbjct: 4   HLYFARKFITNFLM-ILFVFFGIIFLIDMVEQLRRFSSNSVGMKEAAQLALLNAPGNLYR 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    + T  +  ++ R +EL+I   +G S +  +   L +   L +F     N I  
Sbjct: 63  ILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWNPIGA 122

Query: 124 KCRSTIKQLS----AKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNTLQGIFIV 176
              +  + +S     +A  AL+     E L+ R   ++    I  ++ N N T+ G    
Sbjct: 123 ATANLYETISDRHLGRASNALSIG--AEGLWLRQGNVEGQTVIHANETNQNGTILGNVTF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILND 205
            + D  +  IY  ++ +  L+    +LND
Sbjct: 181 LAFDINSQVIYRIEAKTAKLETGGWVLND 209


>gi|89891008|ref|ZP_01202516.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
 gi|89516652|gb|EAS19311.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
          Length = 357

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 141/338 (41%), Gaps = 49/338 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS----TESLNILLKISGYL 56
           +K  + YILR    +FL+     + I   + I ++I  + S     TE +  LL  + Y 
Sbjct: 2   LKILDRYILRQYLGAFLLLLCLFIPIMITVHIAEKIGKILSKDIPFTEVMMYLLDFTIYF 61

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
              + P+   F F + T    + +  NTE++   ++G S    ++P +  A+L+ +   +
Sbjct: 62  SNFLFPI---FLF-ISTMFFTSKLANNTEIVAFLSSGVSYNRFLRPYIIGAVLVCVTALV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEE-------NLFFRLDDDLYIKISKYNPNNT 169
              +  P   +   +          F Y +        N+F R+ DD Y+ +S YN    
Sbjct: 118 FSTVFVPDAAAGFNEFQ--------FKYFKSEKERQTNNVFRRISDDDYVYVSNYNSGRK 169

Query: 170 LQGIFIVD--SRDTQTHKIYYAQSGSID----LDR--QAIILNDGEVHRKSPISKDISIM 221
               F ++  + +   +KIY  +    D    L R  + ++  +GE+   +  +K  +I+
Sbjct: 170 TGYDFTLEHFNGNELEYKIYAERIAFKDSVYTLSRYKKRVLQENGEIL--TTKAKLDTIL 227

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
            F    L   S  + T+   +  + L F+    +  N N     +  Y  E HKR +  +
Sbjct: 228 NFDIDELTPSSYVAETL---SYQKLLDFIETEESRGNGN-----MNVYYVEKHKRTSIPV 279

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
             +IF +I++        V   KK   + ++L+I  G+
Sbjct: 280 SALIFTIIAVA-------VSSVKKRGGMGVNLAIGLGI 310


>gi|257454352|ref|ZP_05619615.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
 gi|257448255|gb|EEV23235.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
          Length = 385

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 2/181 (1%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ + +  +  +  LF++ +    ++++   + +     + +L  I GY IPT L ++ P
Sbjct: 14  YMTQQVAANTAIVLLFLMALMLGGRLIRYFGIAAEGRLDVGLLFAIIGYNIPTFLELILP 73

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
             F +    VL  M  + E+ ++  +G SR  L + ++ L   L IF      + +P   
Sbjct: 74  LSFFIALMLVLGRMYVDQEMSVLFASGISRGRLTRLMIPLITGLFIFQMGISLLAKPWGL 133

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHK 185
           S  KQ+     L      +    F     + ++ + ++N     L+ +++V  +  ++ K
Sbjct: 134 SNSKQIWQTQSLGSLLDLVRPKTFIS-SGNYHLYVDEFNKEKRELKNLYVVQQQTDKSGK 192

Query: 186 I 186
           I
Sbjct: 193 I 193


>gi|169656684|ref|YP_001428997.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290954454|ref|ZP_06559075.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312116|ref|ZP_06802927.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|164551752|gb|ABU62041.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 353

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +
Sbjct: 58  LPGILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
               I P  +   +Q+          +Y   +L+F+  D  ++ I+   P N    GI  
Sbjct: 118 FGGYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNIANIEPTNGKAYGIRK 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
              +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 FMVQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 211


>gi|254369661|ref|ZP_04985671.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122620|gb|EDO66749.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 353

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +
Sbjct: 58  LPGILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
               I P  +   +Q+          +Y   +L+F+  D  ++ I+   P N    GI  
Sbjct: 118 FGGYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNIANIEPTNGKAYGIRK 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
              +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 FMVQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 211


>gi|156935580|ref|YP_001439496.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156935598|ref|YP_001439514.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533834|gb|ABU78660.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533852|gb|ABU78678.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
          Length = 370

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+L  I   ++     P       ++ A+A+     
Sbjct: 82  ESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAGPWSSRHQDEVLAEAKANPGM 141

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLDR-- 198
           + L +  F +  D   +   +    +    +F+   R     +  +  A SG +   +  
Sbjct: 142 AALAQGQFQQATDGNAVLFIESVNGSKFNDVFLAQLRPKGNARPSVVVADSGELSQRKDG 201

Query: 199 -QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  FK Y         +     A   ++  L   N   
Sbjct: 202 SQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVALDPDDAEQMDMKTLWQANS-- 259

Query: 258 PNYRPELLETYRSEFHKRLT 277
                   ++ R+EFH RLT
Sbjct: 260 --------KSARAEFHWRLT 271


>gi|33519519|ref|NP_878351.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
 gi|33517182|emb|CAD83564.1| putative inner membrane protein; predicted permease [Candidatus
           Blochmannia floridanus]
          Length = 370

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 10/163 (6%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           IP +  ++ PF   +        ++ + E+L + +   ++  LI+ +   + +++I   I
Sbjct: 54  IPDLGKLIIPFSLFLSVLISCYRLHMHNEILAMYSCAVNKYVLIQSICMYSTVIAILSLI 113

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI- 175
           +   + P C    + +  K +    F  L E  F+ L D+  +       N  L  +FI 
Sbjct: 114 NLAYLAPHCEQYKENIFFKMKKNTYFIELIEKKFYLLFDEHLVLFIDNIKNGMLNHVFIL 173

Query: 176 --VDSRDTQTHKIYYAQSGSIDLD----RQAIILNDG---EVH 209
             V + D     I  A  GSI  +     Q IIL  G   E+H
Sbjct: 174 KRVQNIDKNVFSIITADQGSIHYNFNDKSQLIILQSGMYYEIH 216


>gi|323188591|gb|EFZ73876.1| hypothetical protein ECRN5871_3010 [Escherichia coli RN587/1]
          Length = 359

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLEQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 210


>gi|254456522|ref|ZP_05069951.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083524|gb|EDZ60950.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 362

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/177 (18%), Positives = 75/177 (42%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL++ +    + WV Q +  ++++     S ++ +  S    P ++  + PF        
Sbjct: 4   FLIALISAGIVIWVFQAVNFLDIMIEDGRSYSVYISYSLLNFPKIINKLFPFILFFSLFY 63

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           V      N EL+I  N G ++I LI  +   +++L +   I   II PK +   +     
Sbjct: 64  VTIKYENNNELIIFWNFGINKIQLINFIFKFSVILMLIQLIFSAIIVPKSQDLARSFLRS 123

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
           + +    ++++   F     ++ I   + + +  L  +++    +    +I YA+ G
Sbjct: 124 STVNFYENFIKPKRFNDTIKNVTIFSERKDIDGNLYNLYLKKEINENNFQITYAKKG 180


>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 366

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 19/136 (13%)

Query: 2   KSFELYILRC-IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI-------LLKIS 53
           +   LY+ R  + R+F +  + +V       +LQ ++L+ +S + L         L    
Sbjct: 9   RQISLYMARLFLTRTFAVLAMLVV-------VLQTLDLLGNSGDILAYPGNSDAQLWHYV 61

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           G   P ++    PF   + T  +L ++N+N+E++ +   G S   ++ P++  A+ +SI 
Sbjct: 62  GLRAPQIIATFLPFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSII 121

Query: 114 LFI-SENIIEPKCRST 128
            F+ +E I+    RST
Sbjct: 122 SFVFNERIV---VRST 134


>gi|56708377|ref|YP_170273.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256770|ref|YP_514132.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670847|ref|YP_667404.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315161|ref|YP_763884.1| hypothetical protein FTH_1435 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010911|ref|ZP_02275842.1| hypothetical protein Ftulh_09398 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931970|ref|YP_001891955.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457507|ref|ZP_03665980.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371000|ref|ZP_04987003.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875200|ref|ZP_05247910.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604869|emb|CAG45953.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144601|emb|CAJ79920.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321180|emb|CAL09336.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130060|gb|ABI83247.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|151569241|gb|EDN34895.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712879|gb|ACD31176.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841199|gb|EET19635.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159996|gb|ADA79387.1| hypothetical protein NE061598_09765 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 353

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +
Sbjct: 58  LPGILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
               I P  +   +Q+          +Y   +L+F+  D  ++ I+   P N    GI  
Sbjct: 118 FGGYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNIANIEPTNGKAYGIRK 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
              +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 FMVQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 211


>gi|117625285|ref|YP_854457.1| putative permease [Escherichia coli APEC O1]
 gi|115514409|gb|ABJ02484.1| putative permease [Escherichia coli APEC O1]
 gi|294491111|gb|ADE89867.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625417|gb|ADN69721.1| hypothetical protein UM146_01460 [Escherichia coli UM146]
 gi|315288788|gb|EFU48186.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951498|gb|EGB47373.1| YjgP/YjgQ permease [Escherichia coli H252]
 gi|323957870|gb|EGB53584.1| YjgP/YjgQ permease [Escherichia coli H263]
          Length = 359

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAII 202
              G+ I   RD  + + Y YA+S +I+ D+  I+
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL 203


>gi|218555553|ref|YP_002388466.1| hypothetical protein ECIAI1_3128 [Escherichia coli IAI1]
 gi|218362321|emb|CAQ99943.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
          Length = 386

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWVASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 237


>gi|157162459|ref|YP_001459777.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|188495921|ref|ZP_03003191.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209920455|ref|YP_002294539.1| hypothetical protein ECSE_3264 [Escherichia coli SE11]
 gi|300815539|ref|ZP_07095763.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|157068139|gb|ABV07394.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
 gi|188491120|gb|EDU66223.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209913714|dbj|BAG78788.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300531468|gb|EFK52530.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201893|gb|EFW76468.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323183568|gb|EFZ68965.1| hypothetical protein ECOK1357_3348 [Escherichia coli 1357]
 gi|323946694|gb|EGB42715.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018178|gb|EGB87397.1| hypothetical protein HMPREF9542_03233 [Escherichia coli MS 117-3]
 gi|324119791|gb|EGC13671.1| YjgP/YjgQ permease [Escherichia coli E1167]
          Length = 359

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 210


>gi|307310386|ref|ZP_07590034.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|306909281|gb|EFN39776.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062298|gb|ADT76625.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|323377117|gb|ADX49385.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 359

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWIL--HGVNHKK 210


>gi|54113817|gb|AAV29542.1| NT02FT0415 [synthetic construct]
          Length = 353

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 19/163 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +
Sbjct: 58  LPGILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
               I P  +   +Q+          +Y   +L+F+  D  ++ I+   P N    GI  
Sbjct: 118 FGGYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNIANIEPTNGKAYGIRK 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
              +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 FMVQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 211


>gi|91212393|ref|YP_542379.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218560054|ref|YP_002392967.1| hypothetical protein ECS88_3361 [Escherichia coli S88]
 gi|237706274|ref|ZP_04536755.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073967|gb|ABE08848.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218366823|emb|CAR04593.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|226899314|gb|EEH85573.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 386

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 141

Query: 115 -FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
             I E +  P  +  ++  S    L      +   L+ R  ++ ++ +   N      G+
Sbjct: 142 GAIDEWVASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNE-FVTVKSLNEQGQPVGV 200

Query: 174 FIVDSRDTQTHKIY-YAQSGSIDLDRQAII 202
            I   RD  + + Y YA+S +I+ D+  I+
Sbjct: 201 EIFHYRDDLSLESYIYARSATIEDDKTWIL 230


>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
 gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
          Length = 360

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F +  L +VF+    ++  R   +   T    +   ISG  +P ++    PF        
Sbjct: 20  FFLGLLALVFLIDFTELSGRTTGLPGFTYGTAV--AISGLRMPMIMLQTVPFVGLFSAMA 77

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
            L S+NR  EL+I  + G S    + P    A+L   F F+S  +I P
Sbjct: 78  TLVSLNRRYELVIARSAGVSAWQFLLPCCIGALL---FGFVSVGLINP 122


>gi|324005416|gb|EGB74635.1| hypothetical protein HMPREF9532_04926 [Escherichia coli MS 57-2]
          Length = 359

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWGASPLQQ--QALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAII 202
              G+ I   RD  + + Y YA+S +I+ D+  I+
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL 203


>gi|260596296|ref|YP_003208867.1| lipopolysaccharide ABC transporter permease LptF [Cronobacter
           turicensis z3032]
 gi|260215473|emb|CBA27590.1| Lipopolysaccharide export system permease protein lptF [Cronobacter
           turicensis z3032]
          Length = 370

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 15/200 (7%)

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+L  I   ++     P       ++ A+A+     
Sbjct: 82  ESEITVMHACGLSKAVLVKAAMVLALLTGIIAAVNVMWAGPWSSRHQDEVLAEAKANPGM 141

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDLDR-- 198
           + L +  F +  D   +   +    +  + +F+   R     +  +  A SG +   +  
Sbjct: 142 AALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPKGNARPSVVVADSGELSQRKDG 201

Query: 199 -QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  FK Y         +     A   ++  L   +   
Sbjct: 202 SQVVTLNQGTRFEGTAMLRDFRITDFKDYQAIIGHQAVALDPDDAEQMDMQTLWQADS-- 259

Query: 258 PNYRPELLETYRSEFHKRLT 277
                   ++ R+EFH RLT
Sbjct: 260 --------KSARAEFHWRLT 271


>gi|157155522|ref|YP_001464443.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|193067447|ref|ZP_03048415.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|260869741|ref|YP_003236143.1| hypothetical protein ECO111_3808 [Escherichia coli O111:H- str.
           11128]
 gi|157077552|gb|ABV17260.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|192959404|gb|EDV89839.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|257766097|dbj|BAI37592.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323178688|gb|EFZ64264.1| hypothetical protein ECOK1180_2420 [Escherichia coli 1180]
          Length = 359

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWVL--HGVNHKK 210


>gi|326796829|ref|YP_004314649.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
 gi|326547593|gb|ADZ92813.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
          Length = 369

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 22/244 (9%)

Query: 36  INLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           +N +  + E   S   L  I G+ +P+ + M+ P  F +        +    E+ I+ ++
Sbjct: 32  VNYLGRAAEGKMSFEFLFIILGFHVPSFIQMILPLAFFLSLLLAYGRLYIENEMSILFSS 91

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT-FSYLEENLF- 150
           G S++ L    L +A LL++        + P       +L+ + Q  LT F +++   F 
Sbjct: 92  GISKVKLTVYTLGIAGLLTLTSAFVNFWLSPYSEYQ-AELARQEQDQLTAFDFIQPGRFQ 150

Query: 151 FRLDDDLYIKISKYNPNNT-LQGIFIVD-----SRDTQTHKIYYAQSGSIDLDRQA---- 200
            R     Y+  + + P    +  IF+ D      RD     I    +  I L+ +     
Sbjct: 151 GRGQQTTYV--ASFTPEEGWMNNIFLSDFVRKNGRDIPVQTIA-KNAEQIRLETEGGLNY 207

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
           +I  DG  +  +P + +  IM+F +Y ++ E     TI  KA     + L   N +NP Y
Sbjct: 208 LIFKDGVRYEGTPGAANYRIMEFDTYAIRLEDKAPGTID-KAYAVPTTALF--NSDNPKY 264

Query: 261 RPEL 264
             EL
Sbjct: 265 IAEL 268


>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
 gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
          Length = 359

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/76 (19%), Positives = 39/76 (51%)

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   + T   L  +N + EL+ +  +G S   +++P +FL +L ++ ++ +   + 
Sbjct: 66  VLVPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANTEFLL 125

Query: 123 PKCRSTIKQLSAKAQL 138
           P   +  + L  + ++
Sbjct: 126 PNAMAASRHLRNQKEI 141


>gi|224368911|ref|YP_002603073.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691628|gb|ACN14911.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 391

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 25/317 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           M +   YI R +   F +S +F+  I  + +I +  N+V + +T   ++LL I+  L P 
Sbjct: 2   MTTINRYIFRELIPPFAISAVFLTSIFIMTRIPEITNMVVNYNTGIFSVLLLIACTL-PR 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    +        M+ + E++ +   G +   L+ PVL   +L +        
Sbjct: 61  FMEFTIPMSVMISVLLTFMRMSGDNEIIALKGGGITIYRLLPPVLIFCLLGTAVTLWITI 120

Query: 120 IIEPKCRSTIKQLS---AKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFI 175
           I  P    + K L    A++ L +  S    N  F+   D+ I IS  +     L+ +FI
Sbjct: 121 IGVPLGNMSFKTLGIAMARSNLNVALSDGTFNSSFK---DVMIYISSMDVKTKKLRDLFI 177

Query: 176 VDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            D R      I  A  G +  D      A+ L  G V++    S+ I+ + F +Y +  +
Sbjct: 178 EDRRTKDRVTISVAPEGVLVKDAVTGSYALRLYGGSVNQVDLKSRSINNVGFDTYDINLD 237

Query: 232 SAN---SSTIVLKANDQ----NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
            A    SS +  K  D+     L   L      P     L+     EFH++ +  +  + 
Sbjct: 238 FAQVQKSSKVGNKDFDEMTLNELRAFLKKTSEKPELNAALM-----EFHEKFSIPIACIA 292

Query: 285 FGLISIVAADKRALVRQ 301
            G++++    + A  R+
Sbjct: 293 MGILAMALGLQAASSRK 309


>gi|163756953|ref|ZP_02164060.1| putative permease [Kordia algicida OT-1]
 gi|161323072|gb|EDP94414.1| putative permease [Kordia algicida OT-1]
          Length = 639

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 24/249 (9%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
           C+FI+   W+      I  ++       ++ K   Y  P ++P+V P    + +      
Sbjct: 2   CIFILQTVWLF-----IGELAGKGLDAGVIFKFLLYTTPKLIPLVLPLSILVSSIMTFGR 56

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
              + E   + +TG S    ++ ++   ++L +  F   N + P   S  KQ + +  LA
Sbjct: 57  FAESYEFAAMKSTGISLQRAMRSLIIFIVILGVGTFFFSNSVIP--WSEFKQYNLRKNLA 114

Query: 140 LTFSYLE--ENLFFRLDDDLYIKI-SKYNPNNTLQGIFIV--DSRDTQTHKIYYAQSGSI 194
                L   E +F  +  ++ IK+ +KY  N+ L    I+   S D +   +  ++ G +
Sbjct: 115 KKKPALAIGEGVFNDI-GNINIKVDNKYGDNDQLLDKVIIHQKSNDKKNRIVMKSKKGEL 173

Query: 195 ----DLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
               D D   ++L DG  +        KS +    + + F  Y +  +  + + + L A 
Sbjct: 174 KSSPDSDILQMVLFDGNRYEDVKSNDPKSVLRMQHAKVSFDKYIMNVDLRDINKVDLDAT 233

Query: 244 DQNLSFLLN 252
           D N   + N
Sbjct: 234 DYNTYKMFN 242


>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 368

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTPFC 68
            C+    LM+   I+    ++ +++++  V + TE SL    +++    P ++    PF 
Sbjct: 13  ECVA-GLLMTLGIILGAILLVDMVEQLRTVGARTELSLLGAFQLTALKAPQLILETMPFA 71

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             + +    + +NR++EL  I  +G S    + P  FLA  L     I+  II+P
Sbjct: 72  ILVGSMLAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGC---IAMTIIDP 123


>gi|154174487|ref|YP_001408138.1| permease YjgP/YjgQ [Campylobacter curvus 525.92]
 gi|153793102|gb|EAU00183.2| permease YjgP/YjgQ [Campylobacter curvus 525.92]
          Length = 342

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 140/338 (41%), Gaps = 62/338 (18%)

Query: 17  LMSCLFIVF-IAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTPFCFAMETT 74
           L S LF++  I + IQI +    V+S  E +   LLK+  +++P VL  V P  F +   
Sbjct: 19  LFSTLFLIMSIVFFIQIAR----VTSYIEITFGELLKLYMFMLPRVLLFVVPIAFFVALA 74

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP----------K 124
             L  +++  E ++I   G+S  ++ K  L  +  LS  L I   ++ P           
Sbjct: 75  MTLFRLSKENESIVIFTLGSSPNSIAKFFLAFSAALSALLLIVAIVMIPIASELNSNFID 134

Query: 125 CRSTIKQLSAK-AQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSRD 180
            + T+ +L+ K  Q    FS     +     D+   +Y  I  +NP       FI DS+ 
Sbjct: 135 YKKTVAKLNLKPTQFGQKFSDWMVYVGSEGSDENGTIYKNIVMFNP-------FIKDSQR 187

Query: 181 ---TQTHKIYYAQSG-SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               Q  K+   +S   + L+   I    G+V+ +S          FKS T++T  +   
Sbjct: 188 LIVAQNAKMINTKSNIELSLNNGKIYDMRGKVYHQS---------NFKSMTIRTAQSE-- 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR-LTQWLFPVIFGLISIVAADK 295
               K ND +            + +   LE   S   K+ L+ ++   +F L + + A  
Sbjct: 237 ----KINDVD------------SIKEYWLEAKTSTKRKKDLSTYVLVALFPLATTLFAIS 280

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
             +V  R +   +++    +FG+ +G+  +I  +   P
Sbjct: 281 FGIVTYRYEKGAVYLG---TFGILFGYFTLIMLLSPRP 315


>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 360

 Score = 37.0 bits (84), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           + ISG  +P ++    PF         L S+NR  EL+I  + G S    + P    A+L
Sbjct: 52  MAISGLRMPMIMLQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALL 111

Query: 110 LSIFLFISENIIEP 123
             +   +S  II P
Sbjct: 112 FGV---VSVGIINP 122


>gi|305432149|ref|ZP_07401315.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
 gi|304444814|gb|EFM37461.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
          Length = 341

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 9   LRCIGRSFL---MSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           LR +   FL   +S  F++F I  ++  +Q   L SS   +   LLK+ G+++P +L   
Sbjct: 5   LRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFVDLLKLYGFMLPRILIFT 64

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
            P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   ++ P
Sbjct: 65  LPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALVMIP 123


>gi|71279918|ref|YP_267491.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71145658|gb|AAZ26131.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 388

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 29/293 (9%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL--NILLKISGYLIPTVLPMV 64
           Y+L+ + ++ L +  F++   ++ Q   R+ L  +S  S+   +++      IP +   +
Sbjct: 6   YLLKEVAKTQL-AVFFVLMTIFISQKFVRV-LGDASEGSIPGQLVMTFIALKIPDLAGFI 63

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++E+ ++   G S   +++  L LA++ +IF  I    + P 
Sbjct: 64  LPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYLAPL 123

Query: 125 CRSTIKQLSAKAQLAL--TFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIV---- 176
                 Q   K +LA     S L    F +    D +     K    N+   +F+     
Sbjct: 124 ASEY--QYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDKDRETNSFNKVFVAQLPK 181

Query: 177 -DSRDTQ--THKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
            D+ D       + YA++G +   D   Q ++L DG  + +   SK+   + F  Y +Q 
Sbjct: 182 GDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYYIQI 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
           +        ++   + LS +      N N  PEL   YR+    R+    FP+
Sbjct: 242 KDQE-----VEHQHRKLSAISTLELYN-NMPPELESAYRATIQWRIA---FPL 285


>gi|328948914|ref|YP_004366251.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449238|gb|AEB14954.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 447

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 4/155 (2%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           +N +LK+  Y +P V+    PF   +     L  +  + E+LI   +G     ++K VL 
Sbjct: 125 INSVLKLILYCLPNVISQSAPFATLVGFLMCLGRLVTDNEILIFRASGQRYSLILKSVLA 184

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
           + +L+S+F FI  +   P       +L  +  ++     LE     R++D   + I   +
Sbjct: 185 MGLLISVFSFIMNDYFLPIGTLKYNRLFKQIIVSNPAIELESKSIKRMNDSTLV-IGNVS 243

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
            NN +  I + DS      +I  A  G+ D+ + +
Sbjct: 244 KNN-VSDIVLFDSEKDGVQRIIMA--GNSDVKKSS 275


>gi|166154183|ref|YP_001654301.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|166155058|ref|YP_001653313.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335428|ref|ZP_07223672.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
 gi|165930171|emb|CAP03655.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|165931046|emb|CAP06609.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 354

 Score = 37.0 bits (84), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 82/183 (44%), Gaps = 4/183 (2%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + 
Sbjct: 48  VFKVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASG 107

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNPN 167
           +L  F F + + +   CR   +   A A +A+T  + L + L  + +D ++I I      
Sbjct: 108 VLCCFNFYTCSELASICR--FQTGKAIANIAMTSPALLLQTLQKKENDRIFIAIDHCG-K 164

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           +    + I    + +   I + ++   D+++ ++   +  V  K P+  +        + 
Sbjct: 165 SKFDNVIIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEFY 224

Query: 228 LQT 230
           L+T
Sbjct: 225 LET 227


>gi|300905894|ref|ZP_07123627.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|301304160|ref|ZP_07210276.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|300402363|gb|EFJ85901.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|300840573|gb|EFK68333.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|315256878|gb|EFU36846.1| putative permease [Escherichia coli MS 85-1]
          Length = 344

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I  D+  ++   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIKDDKTWVL--HGVNHKK 210


>gi|255349244|ref|ZP_05381251.1| putative membrane transport protein [Chlamydia trachomatis 70]
 gi|255503781|ref|ZP_05382171.1| putative membrane transport protein [Chlamydia trachomatis 70s]
 gi|255507462|ref|ZP_05383101.1| putative membrane transport protein [Chlamydia trachomatis
           D(s)2923]
 gi|289525885|emb|CBJ15367.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
 gi|296435471|gb|ADH17649.1| putative membrane transport protein [Chlamydia trachomatis E/150]
 gi|296439188|gb|ADH21341.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
          Length = 354

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 84/184 (45%), Gaps = 6/184 (3%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + 
Sbjct: 48  VFKVTAYQIPYLLPFILPVSCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASG 107

Query: 109 LLSIFLFISENIIEPKCR-STIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNP 166
           +L  F F + + +   CR  T K++   A +A+T  + L + L  + +D ++I I     
Sbjct: 108 VLCCFNFYTCSELASICRFQTGKEI---ANIAMTSPALLLQTLQKKENDRIFIAIDHCG- 163

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            +    + I    + +   I + ++   D+++ ++   +  V  K P+  +        +
Sbjct: 164 KSKFDNVIIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEF 223

Query: 227 TLQT 230
            L+T
Sbjct: 224 YLET 227


>gi|254360524|ref|ZP_04976673.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261492350|ref|ZP_05988912.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496136|ref|ZP_05992544.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153091064|gb|EDN73069.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261308238|gb|EEY09533.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312033|gb|EEY13174.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 369

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/202 (18%), Positives = 86/202 (42%), Gaps = 7/202 (3%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+++ ++   S     ++++ + G  +PT+  ++ P    +     L      +E+ ++ 
Sbjct: 30  QLVRVLSSAVSGKVPADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMR 89

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
             G  +  L+K  +FL+I  +     +   + P   +   ++ A+A+    F+ L    F
Sbjct: 90  ACGIGQGLLVKVAMFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQF 149

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK--IYYAQSGSIDL---DRQAIILND 205
                  Y+       NN+L  I++      + +K  +  A+SG++       Q + L +
Sbjct: 150 MSAGG--YVLFIDKIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAE 207

Query: 206 GEVHRKSPISKDISIMKFKSYT 227
            +    +P S D  I  F++Y+
Sbjct: 208 SKRFEGTPQSADFRISHFENYS 229


>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 361

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + PFC  +       +++R+ EL++    G S    I P L+ AI + I    
Sbjct: 59  VPQLLERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATT 118

Query: 117 SENIIEPKCRSTIKQLSAK 135
             N +    +   KQ+ A+
Sbjct: 119 IFNPLSAHMQERAKQMEAE 137


>gi|330818019|ref|YP_004361724.1| Permease, putative [Burkholderia gladioli BSR3]
 gi|327370412|gb|AEA61768.1| Permease, putative [Burkholderia gladioli BSR3]
          Length = 363

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLA----ILLSIFLFISENIIEPKCRSTIKQ 131
           VLT   +++E+++   +G S   LIKP+   A    +L++ F F+      P      K 
Sbjct: 75  VLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW----PWSNQQSKL 130

Query: 132 LSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           + A+ Q     S L    F      +    I K + +   +Q +F+  +   + + +  +
Sbjct: 131 IKARFQQRDEVSLLAPGQFRESPSTNRVFFIEKMSADQAAVQNVFVTTTEQGKVN-VVVS 189

Query: 190 QSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           Q+G  +  +     I+L +G  +   P   +  IM+F+ Y ++ +S    T     +   
Sbjct: 190 QTGHTETAQNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQPTTTSTPT 249

Query: 247 LSFLLNPNPNN 257
           L  L +P   N
Sbjct: 250 LDLLRDPTDEN 260


>gi|293412357|ref|ZP_06655080.1| predicted protein [Escherichia coli B354]
 gi|291469128|gb|EFF11619.1| predicted protein [Escherichia coli B354]
          Length = 359

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y +A+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIFARSATIEDDKTWIL--HGVNHKK 210


>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
 gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 362

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS-IFLFI 116
           P ++  V P    M     L    R+ EL+ +   G S   +  P+L + +L S I L  
Sbjct: 59  PLIITQVAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAA 118

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGI 173
           +E I+ P  +     L+ + +      Y ++ ++ R +  + + I +  P   TL+GI
Sbjct: 119 NEVIVPPSIQRARHILTTEVRGGPAVHYKQDKIWLRHNRSI-LNIRQIEPVQQTLKGI 175


>gi|304410147|ref|ZP_07391766.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302142|ref|ZP_07581900.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351556|gb|EFM15955.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914180|gb|EFN44601.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 352

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 1/163 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             P       +L A      +       ++ + D DL++ I +
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAK-DGDLFVNIGE 162


>gi|189461471|ref|ZP_03010256.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
 gi|189431805|gb|EDV00790.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
          Length = 635

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 22/234 (9%)

Query: 1   MKSFELYILRCIGRSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGY 55
           +K  ++++L+    SFL+      FI    +++Q L R    LV    E +N+L +   Y
Sbjct: 4   IKKLDIFVLK----SFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLE-INVLAQFFFY 58

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
              T++P+  P    +       +     ELL +   G   + +I+PV+   + L    F
Sbjct: 59  SGLTLIPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPVVLFCVFLGGISF 118

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGI 173
             +NII P+ +  +  L    +       + E +F+   D  ++Y+K  K      L+ I
Sbjct: 119 FFQNIIGPRAQKQLWTLLVSMKQKSPEVDIPEGVFYSDIDGYNIYVK-HKDRKTGLLKDI 177

Query: 174 FIVDSRDT-QTHKIYYAQSGSIDL--DRQAIILN--DGE----VHRKSPISKDI 218
            I +  D  +   I +A  G ++L  D+Q + L+  +GE    +  +S IS+++
Sbjct: 178 LIYNFSDGFENAHIIWAAEGKLELTADKQHLFLHLYNGEQFENLKSQSVISRNV 231


>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
 gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
          Length = 366

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL----NILLKISGYL---IPTVLPMV 64
           + + FL+    I+F   ++ +LQ ++++S S   L    N   ++  Y+    P ++  +
Sbjct: 16  MAKMFLLRTFAILFA--LVIVLQALDILSESGAILATPGNGEAQVWRYVSLRAPQIIAFI 73

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            PF   + T     +MN+N+E++ +   G S   ++ P+L  +  +++  F   + I P+
Sbjct: 74  LPFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLSFAFNDRIVPR 133

Query: 125 CRSTIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIK--ISKYNPNNTLQGIFIVDSRDT 181
             +T+          +   S    N++ R  DDL     +     N  L G+ + D +  
Sbjct: 134 ATATLSAWQKVDYGPIPIDSGDRSNVWVRDGDDLISVDLVQGRGANTQLGGVTLYDRKGG 193

Query: 182 QT 183
            +
Sbjct: 194 GS 195


>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 365

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           I+++++ + ++S+  S  ++ + S + +P +L  + PFC  +       +++R  EL++ 
Sbjct: 37  IEMVRKTSGLASA--SALMVAETSLFRVPQLLEKMMPFCVLIGAMTCYLALSRRLELVVA 94

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              G S    I P L  AI+L +      N +    R   K++ A+
Sbjct: 95  RAAGVSAWQFIAPALASAIVLGLMATTLYNPMSANLRELSKRMEAE 140


>gi|332088227|gb|EGI93348.1| hypothetical protein SD15574_3353 [Shigella dysenteriae 155-74]
          Length = 109

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
           L M+ P    +     L  M  ++E+  I   G  R    KP
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGAVRDACTKP 102


>gi|307139669|ref|ZP_07499025.1| hypothetical protein EcolH7_16278 [Escherichia coli H736]
          Length = 359

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|89891367|ref|ZP_01202873.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
 gi|89516398|gb|EAS19059.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
          Length = 481

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 53/123 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL    ++FL   + I+FI  +  I   I  ++     +  + K   Y IP +
Sbjct: 1   MKILDRYILTSFIKTFLSVFIVIMFILILQAIWLYIKDLAGKDLDMITIAKFMMYTIPVI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +  V  +M  N E   + + G S    ++ ++ +   L +  F   N 
Sbjct: 61  VPLALPLSIILASIMVFGNMAENYEFAAMKSNGISLQRAMRSLMIVVGTLGVTSFFFANT 120

Query: 121 IEP 123
           + P
Sbjct: 121 VIP 123


>gi|157960740|ref|YP_001500774.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
 gi|157845740|gb|ABV86239.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
          Length = 352

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 82/182 (45%), Gaps = 3/182 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  ++ L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MKILDLYIARILISTSSLALLVLTGLSGIIKWVDQLRVVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSSGLSRLQITMSAMKTAIPLMILVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P      K++  K       S +E N   +  D  L++ I     +N L+ I + +  
Sbjct: 121 VAPVAELRAKEI--KRTKVSGGSLIESNRGIWAKDGPLFVSIGGVVDSNHLRDITLYEFS 178

Query: 180 DT 181
           DT
Sbjct: 179 DT 180


>gi|328948913|ref|YP_004366250.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449237|gb|AEB14953.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 356

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVLPMVT 65
           Y+L+     F+ + +F V +  +  +   + N +S +  S ++ L I  Y IP  +    
Sbjct: 6   YMLKRFFPVFIGAVMFFVLVLCLTDLFMNLWNYISKNVSSRDVAL-ILIYYIPKAVWYAV 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE-NIIEP 123
           P      T  +L+      ELL +  +G S      P+L +A+ +S  LFI E NI+ P
Sbjct: 65  PIAMLFATAYMLSDFYARNELLAVFASGISLFKFSVPLLTVAVAMSFALFIFEDNIVVP 123


>gi|229496640|ref|ZP_04390354.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229316537|gb|EEN82456.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 358

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 33/278 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVLPMVT 65
           YI+R    ++  S L I+ +A V  I +RI+   +   SL  I+       +P    M +
Sbjct: 8   YIIRLFLGTYFSSILLILSVAIVFDINERISKFLNPECSLYEIVFHYYLNFVPYYANMFS 67

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF-ISENIIEPK 124
           P    +      + +   TE++ I  +G S   L++P LF A ++++  F +S  +I P 
Sbjct: 68  PLFVFLSVIFFTSKLAEKTEIIAILASGVSFKRLLRPYLFSAAIVALLTFLLSSFVIPPG 127

Query: 125 CRS----TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            R       K    K Q   T++   E++  ++   L+  I  Y+ +N     F++D  +
Sbjct: 128 SRVRNDFQNKYFRDKRQ---TYA---ESVQIQVSPSLFAYIHSYSADNKTGYNFMLDKFE 181

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSST 237
             T K    AQ+   D       LN   ++       D SI ++  K  TL+  +   +T
Sbjct: 182 HNTIKSRLTAQTAEYD------TLNTWRLY-------DYSITRYGAKRDTLERGTQLDTT 228

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           I LK  D    FL++   +   Y   +L  Y  E   R
Sbjct: 229 INLKPQD----FLISA-VDAETYTTPVLHQYIGELKSR 261


>gi|91792233|ref|YP_561884.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
 gi|91714235|gb|ABE54161.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
          Length = 351

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 82/188 (43%), Gaps = 2/188 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            +LYI R I  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  + M
Sbjct: 3   LDLYIARAILATSSLCLLILTGLSGIIKWVDQLRLVGRGSYTMIDAGIYVLFLIPRDIEM 62

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +     +  +  ++EL+++  +G SR+ +    +  A+ L + + +      P
Sbjct: 63  FFPMAVLLGALIGMGMLASSSELVVMQASGMSRLQISMSAMKTAVPLMLLVMVLGEWGAP 122

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQ 182
               + K+L A      +       ++ + D DL++ I +    N+L  I + +     +
Sbjct: 123 VAERSAKELQATKLSGGSLIKSHRGIWAK-DGDLFVNIGEVETVNSLNNITLYEFDEAMK 181

Query: 183 THKIYYAQ 190
             K+ +AQ
Sbjct: 182 LVKVIHAQ 189


>gi|325300373|ref|YP_004260290.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
 gi|324319926|gb|ADY37817.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
          Length = 636

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 22/234 (9%)

Query: 1   MKSFELYILRCIGRSFLM---SCLFIVFIAWVIQILQRI--NLVSSSTESLNILLKISGY 55
           +K  +++IL+    SFL+      FI    +++Q L R    LV    E +NIL +   Y
Sbjct: 4   IKKLDIFILK----SFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLE-INILAQFFFY 58

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
              T++P+  P    +       +     ELL +   G   + ++ PV+     L +  F
Sbjct: 59  SGLTLIPISLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMCPVILFCAFLGLMSF 118

Query: 116 ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGI 173
           I +N I P+ +  +  L    +       + E +F+   D  ++Y+K  K      L+ +
Sbjct: 119 IFQNEIGPRAQKKLWTLLVSMKQKSPEVDIPEGVFYSEIDGYNIYVK-HKDRETGMLKDV 177

Query: 174 FIVDSRDT-QTHKIYYAQSGSIDL--DRQAIILN--DGE----VHRKSPISKDI 218
            I +  D  +   I +A+ G +++  D++ + L+  +GE    +  +S IS+++
Sbjct: 178 LIYNFSDGFENAHIIWAEEGKLEMTADKKHLYLHLYNGEQFENLKSQSVISRNV 231


>gi|56461046|ref|YP_156327.1| permease [Idiomarina loihiensis L2TR]
 gi|56180056|gb|AAV82778.1| Predicted permease [Idiomarina loihiensis L2TR]
          Length = 356

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
           N+EL+++   G SR+ +I  V+  AI++ + +      I P   +  + + ++A    + 
Sbjct: 84  NSELVVMMAAGRSRLNIIGAVMKSAIIMMVAVMAIGEWIAPPMEAQGRAIRSQAISGGSL 143

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT-QTHKIYYAQSGSIDLDR 198
              ++ ++ + D   +I I +      L  + I D  D  +  K+ YA++ +   D+
Sbjct: 144 ISAQQGVWAK-DGSDFINIGEVEDTGRLNDVLIYDFNDNRELQKVTYARTANFSGDK 199


>gi|331643680|ref|ZP_08344811.1| putative permease [Escherichia coli H736]
 gi|331037151|gb|EGI09375.1| putative permease [Escherichia coli H736]
          Length = 386

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWVASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|237736827|ref|ZP_04567308.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420689|gb|EEO35736.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 360

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 24/233 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI +   +SF++S +  + I  V Q+ + +  +S    +    +    Y I T+
Sbjct: 1   MKIIDKYISKNFIKSFMLSLMAFMGIFIVSQLFRVVKYLSDGRFTPGDAV----YYIITL 56

Query: 61  LPM----VTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           LP     V P    + +   ++SM  N E++ +  +G    RI L  P++  AI+  +  
Sbjct: 57  LPRTFIDVAPLAVLLGSMMTISSMASNLEIISLKTSGIKFRRIVLF-PIIISAIISGVVF 115

Query: 115 FISENI--IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTL- 170
           F+++ +  I  K    ++    + ++A      + N F R +D  YI +  K N      
Sbjct: 116 FVNDTLYPISLKINRDLRSGEVQKRVA---PLEKRNAFLRGEDSNYIYLMQKVNRETGFA 172

Query: 171 QGIFIVDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVH----RKSPISKD 217
           + I IVD   +  +  +I  A  G  +  ++  +L D  ++     K P +K+
Sbjct: 173 ENIEIVDLNKSFDKIERIITAPEGRYNFGKKVWMLKDVNIYYGDDNKKPETKE 225


>gi|238897461|ref|YP_002923138.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465216|gb|ACQ66990.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 364

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 23/216 (10%)

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E++ +   G  +  LIK  L LA L S+F  I+     P      K++  + ++    S
Sbjct: 83  SEIIAMYACGVGKTRLIKVALVLAALTSLFATINVFYFSPWSVKHEKKIINEERVNPGLS 142

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRDTQTHKIYYAQSGSIDLDR--- 198
            L +  F    D   +   +   N     IF+   +S  TQ   +  A SG I       
Sbjct: 143 ALVKGQFQSSPDGKIVLFIQDIQNKKFHKIFLAQRESNHTQRPTVVVANSGYISAPAPGI 202

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSY----TLQTESANSSTIVLKANDQNLSFLLNPN 254
           Q + LN G  +   P   D  I  F  Y    + ++ + NS+T    A   ++S L    
Sbjct: 203 QLLTLNHGMNYEGIPPLGDFRITYFNHYQAVISRKSVTKNSNT----AQQMSMSSLW--E 256

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            N+P+ R EL        H RLT  +  VI   +++
Sbjct: 257 ANDPDTRAEL--------HWRLTLIVSVVIMAFMAV 284


>gi|297172254|gb|ADI23232.1| predicted permeases [uncultured nuHF2 cluster bacterium
           HF0770_13K08]
          Length = 351

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%)

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           + T    +S+N+N ELL I ++G     L  PVL ++ L++ F + S+N +      T  
Sbjct: 73  LATIATYSSLNKNAELLAIRSSGIGGWRLAFPVLAVSALIASFAYFSQNYMYTWMHQTWV 132

Query: 131 QLSAKAQLALTFSYLEEN 148
           +    A+L   +   EE 
Sbjct: 133 KQENSARLPPLWKVGEEQ 150


>gi|323173776|gb|EFZ59405.1| hypothetical protein ECLT68_2094 [Escherichia coli LT-68]
          Length = 359

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 360

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+    ++FI    ++  R++ +   T S  +L+  + + IPT+L    PF        
Sbjct: 21  FLIGIFALIFIIDFSELTSRMSNLPHYTVSGALLM--TTFRIPTILQQTVPFVALFAAMA 78

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA- 134
            L S+NR  EL++    G S    ++P +  A+   IF  ++  +I P      K+  A 
Sbjct: 79  ALISLNRRYELVVTRAAGISVWQFLRPFVVGAL---IFGALAVVVINPLAAWGTKKAEAL 135

Query: 135 KAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ---THKIYYAQ 190
           +A+   T S    ++ + R           Y+  +T+ G   V +  T+      I++  
Sbjct: 136 EAEWGSTRSAAANSIPWLR---------QIYDGTDTIIGARSVQNGGTELINVTVIHFDP 186

Query: 191 SGSIDL--DRQAIILNDG 206
            G+I L  D ++  L DG
Sbjct: 187 QGAITLRQDAKSAKLEDG 204


>gi|288940756|ref|YP_003442996.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
 gi|288896128|gb|ADC61964.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
          Length = 380

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 7/233 (3%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R   + FL   L +V I   +  L+ +  V+     ++++ +     I   +  + P  F
Sbjct: 17  REAAQVFLAIVLVLVLILASLMFLRTLEEVNLGGLGVDVVFRYLSLQIQRDISSLLPPAF 76

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L    R++EL+ +   G     L +  L LA+ ++         ++P   + I
Sbjct: 77  FLAILVTLARFARDSELIAMQACGVGPPRLYRTFLLLAVPVAFVTGWVALDLKPHAAAGI 136

Query: 130 KQ--LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           +Q  L  K Q A          +      + + I + + +  L  +F++D R  +T ++ 
Sbjct: 137 QQIRLQQKEQAAQIAGLQAGRFYVEEQGKVVVYIGEIDQHKLLGDVFVLDRRGEKT-RLV 195

Query: 188 YAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + SG   ++       + L  G        S    I  F+ Y ++   A S+
Sbjct: 196 VSDSGRHRIEESTGDHLVTLTQGHRFDGQAGSGAYLIGDFERYEIRLADAGSA 248


>gi|170018762|ref|YP_001723716.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|297517383|ref|ZP_06935769.1| hypothetical protein EcolOP_07055 [Escherichia coli OP50]
 gi|300916914|ref|ZP_07133617.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923636|ref|ZP_07139664.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300950817|ref|ZP_07164703.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958360|ref|ZP_07170501.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|312972760|ref|ZP_07786933.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|169753690|gb|ACA76389.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378535|emb|CAQ33321.1| ybl135 [Escherichia coli BL21(DE3)]
 gi|284923006|emb|CBG36098.1| putative permease [Escherichia coli 042]
 gi|300314944|gb|EFJ64728.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|300415884|gb|EFJ99194.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420077|gb|EFK03388.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300449912|gb|EFK13532.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|310332702|gb|EFP99915.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936016|gb|EGB32311.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941919|gb|EGB38098.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|332344938|gb|AEE58272.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 359

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|78060332|ref|YP_366907.1| ATPase AAA_5 [Burkholderia sp. 383]
 gi|77964882|gb|ABB06263.1| ATPase AAA_5 [Burkholderia sp. 383]
          Length = 400

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLA 107
           P V P+   + F    TNVL  +  N  +L+I +TGT + +LI+    LA
Sbjct: 127 PLVPPLNPAYLFTARATNVLEDIVENRRILLIGHTGTGKTSLIEQAAALA 176


>gi|294670275|ref|ZP_06735168.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308012|gb|EFE49255.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 370

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 49/259 (18%), Positives = 109/259 (42%), Gaps = 10/259 (3%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTE---SLNILLKISGYLIPTVLPMVTPFCFAM 71
           +F    +F+V +A V+   Q INL+  + +   +++ +  + G+    + P++      +
Sbjct: 12  TFTAIGIFVVILA-VLVSTQAINLLGRAADGRVAVDAVAALIGFWTLGMTPLLLVLTAYI 70

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            T  VLT   R++E+ +  + G S    ++PVL  A+  +  +   +  + P      ++
Sbjct: 71  STLTVLTRFWRDSEMSVWLSCGLSLRQWVRPVLSFALPFAALVAAMQLSVLPWAELRSRE 130

Query: 132 LSAKAQLALTFSYLEENLFFRL---DDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
            +   +     S +E   F  L   +  +Y   +    +  ++ +F+ +  D     I +
Sbjct: 131 FAEILKQKQELSMVEAGEFRTLGKKNGRVYFVGTFDTGSGIMKNLFLREQDDKGRENIIF 190

Query: 189 AQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           A+ G   L  +++ + L  G  +   P   D + + F+   L   SA    I    + + 
Sbjct: 191 AKEGRFSLTDNKRTLELTQGYRYGGIPGEADYNQVSFEHLNLII-SATPKIINPIDHRRT 249

Query: 247 LSFLLNPNPNNPNYRPELL 265
           +        +NP +R EL+
Sbjct: 250 IPTAKLIGSDNPQHRAELM 268


>gi|15605574|ref|NP_220360.1| hypothetical protein CT839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76789584|ref|YP_328670.1| permease [Chlamydia trachomatis A/HAR-13]
 gi|237803271|ref|YP_002888465.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805192|ref|YP_002889346.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311680|ref|ZP_05354250.1| putative membrane transport protein [Chlamydia trachomatis 6276]
 gi|255317981|ref|ZP_05359227.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
 gi|3329310|gb|AAC68436.1| hypothetical protein CT_839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76168114|gb|AAX51122.1| predicted permease [Chlamydia trachomatis A/HAR-13]
 gi|231273492|emb|CAX10408.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274505|emb|CAX11301.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436395|gb|ADH18569.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
 gi|296437326|gb|ADH19496.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
 gi|296438254|gb|ADH20415.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
 gi|297140755|gb|ADH97513.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
 gi|297748967|gb|ADI51513.1| Predicted permease [Chlamydia trachomatis D-EC]
 gi|297749847|gb|ADI52525.1| Predicted permease [Chlamydia trachomatis D-LC]
          Length = 354

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +I PVL  + 
Sbjct: 48  VFKVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPVLIASG 107

Query: 109 LLSIFLFISENIIEPKCR-STIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNP 166
           +L  F F + + +   CR  T K++   A +A+T  + L + L  + +D ++I I  +  
Sbjct: 108 VLCCFNFYTCSELASICRFQTGKEI---ANIAMTSPALLLQTLQKKENDRIFIAID-HCG 163

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            +    + I    + +   I + ++   D+++ ++   +  V  K P+  +        +
Sbjct: 164 KSKFDNVVIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEARTSNPNEF 223

Query: 227 TLQT 230
            L+T
Sbjct: 224 YLET 227


>gi|301643655|ref|ZP_07243696.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301078039|gb|EFK92845.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 349

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 110

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q     Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 111 TVSLGAIDEWVASPLQQ--QALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 168

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 169 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 210


>gi|300870020|ref|YP_003784891.1| putative permease [Brachyspira pilosicoli 95/1000]
 gi|300687719|gb|ADK30390.1| putative permease, YjgP/YjgQ family [Brachyspira pilosicoli
           95/1000]
          Length = 356

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 48/114 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F+ S +  V +  +  +  +++  +   E++   +       P  
Sbjct: 1   MKKLNSYLLKEFLSMFVGSLILFVILVTIADLSSKLSYYTEHPENMKYFITYHAARTPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           L  + P      +T VL +  +N E+L + N+G S      P+  + I L + L
Sbjct: 61  LYYLFPIALMFSSTYVLGTFVKNKEMLAVQNSGISLFKFSSPIFIIVIALCLGL 114


>gi|78212778|ref|YP_381557.1| permease [Synechococcus sp. CC9605]
 gi|78197237|gb|ABB35002.1| possible permease [Synechococcus sp. CC9605]
          Length = 386

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 44/81 (54%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           + I +++  + IP  L    P    M +  V T ++ N+EL  + + G + + +I   L 
Sbjct: 59  ITIAVQVLLFSIPRWLAFSVPIGTLMASLFVFTRLSANSELTALRSLGITTVRMISAALA 118

Query: 106 LAILLSIFLFISENIIEPKCR 126
           L++++++F F+  +++ P+ +
Sbjct: 119 LSMVMTLFTFVLNDVVVPRSQ 139


>gi|189464158|ref|ZP_03012943.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
 gi|189437948|gb|EDV06933.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
          Length = 632

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 66/354 (18%), Positives = 150/354 (42%), Gaps = 35/354 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPT 59
           +K  +++IL+     F M   FI    +++Q L + ++ +      +++L +   Y   T
Sbjct: 4   IKKLDIFILKSFCTLF-MGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALT 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++P   P    +       +     ELL +   G S + +++P++   I +    F  +N
Sbjct: 63  LVPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIIFICGVSFYFQN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGIFIVD 177
           +I PK ++ +  L    +       + E +F+   D  +LY+K  K      L  + I +
Sbjct: 123 VIGPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVK-HKNRKTGMLYDVLIYN 181

Query: 178 -SRDTQTHKIYYAQSGSIDL--DRQAIILN--DGEV---------------HRKSPISKD 217
             +  +  +I  + SG +++  D+Q + L+  +GE                +R+    + 
Sbjct: 182 FEKGFENAQIIKSDSGRLEMTADKQHLYLHLYNGEQFENLKSQNMNQKNVPYRREAFREK 241

Query: 218 ISIMKFKS-------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR- 269
            +I++F S         + ++S +    +L+A   +++ + N +     ++  +  TY+ 
Sbjct: 242 HAIIEFNSDFNMVDAGIMSSQSNSKDMAMLQAGIDSMT-VQNDSVGRAYFKEAMNGTYKI 300

Query: 270 -SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
            ++  K  T  +     G  ++ +    A + Q++KI    +S + S G  W F
Sbjct: 301 TADLKKADTLKIEQAHLGEYNVDSLFNVATLSQKQKIISTAVSRAESAGSDWSF 354


>gi|26249547|ref|NP_755587.1| hypothetical protein c3716 [Escherichia coli CFT073]
 gi|254162933|ref|YP_003046041.1| hypothetical protein ECB_02855 [Escherichia coli B str. REL606]
 gi|26109955|gb|AAN82160.1|AE016766_248 Hypothetical protein c3716 [Escherichia coli CFT073]
 gi|253974834|gb|ACT40505.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978989|gb|ACT44659.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|309703415|emb|CBJ02754.1| putative permease [Escherichia coli ETEC H10407]
          Length = 386

 Score = 36.2 bits (82), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 19/164 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I + G S  RI L+      A++  I  
Sbjct: 84  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALV------ALVAGILW 137

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN 168
            +S   I+    S ++Q +   Q+  T + L E      N+ +    + ++ +   N   
Sbjct: 138 TVSLGAIDEWVASPLQQQA--LQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQG 195

Query: 169 TLQGIFIVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRK 211
              G+ I   RD  + + Y YA+S +I+ D+  I+   G  H+K
Sbjct: 196 QPVGVEIFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKK 237


>gi|297170682|gb|ADI21706.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
           HF0130_14P10]
          Length = 392

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
           +L+P+ LP + P    + T  V+ ++ RN E+ ++   G + + L + +L  A+LLS
Sbjct: 55  WLVPSYLPWLLPIALFVSTLFVVATLRRNNEIAVLRACGVNVLRLSRSLLVTALLLS 111


>gi|218264803|ref|ZP_03478497.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221776|gb|EEC94426.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
          Length = 655

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 16  FLMS---CLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           FLM+   CLFIV    ++Q L R I+ +      + +L ++  Y    ++PM  P    +
Sbjct: 19  FLMTFGICLFIV----LMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPLAILL 74

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
            +     ++    ELL + + G S + +++P++    ++SI  F  +N   P
Sbjct: 75  ASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISMISIGAFFFQNYAMP 126


>gi|320539289|ref|ZP_08038959.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
 gi|320030681|gb|EFW12690.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
          Length = 396

 Score = 36.2 bits (82), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 15/199 (7%)

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ ++   G  + TLI   + LAIL S    ++     P   S    + ++A+   + +
Sbjct: 115 SEITVMHACGLGKRTLIIAAMILAILTSAVAAVNVFWANPIASSYQDVVVSEAKANPSIA 174

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGSIDLDR--- 198
            L E  F    D   +        +T   +F+   R   TQ   +  A+ G+I+  +   
Sbjct: 175 GLVEGQFKPSQDGNAVVFIGNVKGSTFNNVFLAQLRTNGTQRPSVVVAEHGNINPQKDGS 234

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           Q + L+ G     + + +D  I  F +Y  +    + +  V     + +S       ++P
Sbjct: 235 QVVTLDKGTRFEGTALLRDFRITDFNNY--KAVIGHRAVAVDNTQSEQMSMKTLWQSDDP 292

Query: 259 NYRPELLETYRSEFHKRLT 277
           +         R+EFH RLT
Sbjct: 293 D--------ARAEFHWRLT 303


>gi|302392908|ref|YP_003828728.1| permease [Acetohalobium arabaticum DSM 5501]
 gi|302204985|gb|ADL13663.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
          Length = 364

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P V+ +  P    + T      ++ ++E++ +   G S I LI PVL +A+LLS    +
Sbjct: 58  LPEVIVLTFPMSMLLATLLSFGRLSGDSEVVALKAGGVSFIRLIIPVLIVALLLSGLTIL 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS----KYNPNN---T 169
           +   I P+ +   +++    +        ++NL     D    KI      Y+ +    T
Sbjct: 118 ANETIVPQSKDAYRRIVWNIKHQEKMPTTQKNLRIAPLDKKTGKIDYIFYAYHFDGSDLT 177

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTL 228
           ++ + + D ++ +  ++  A+      +R   I  DG ++  +  SKD +  M+F++YT+
Sbjct: 178 MEEVSLQDYQNGKLVQVIEAKRARWTDERWQFI--DGTIYNVN--SKDKVPTMEFETYTV 233

Query: 229 Q 229
           +
Sbjct: 234 K 234


>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 359

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +V+I    +I  R   +   T S    L ++   +P ++    PF   +     L S+NR
Sbjct: 28  LVYIVTFTEITGRAGDLEGFTTSWA--LGLAALQLPIIMQQAVPFIGLVAAIATLISLNR 85

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             EL+I    G S    + P+ F A +  +   +  N I  +  ++ + L A  + A T 
Sbjct: 86  KYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNPIAARAFASAQMLEATVRGADTS 145

Query: 143 SYLEEN 148
           +  +E 
Sbjct: 146 NNAKER 151


>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 362

 Score = 36.2 bits (82), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           ++++  ++++L+R      +T SL   L       P+V   + PFC    T     ++ R
Sbjct: 29  MIYVIDLVEMLRRAGNRPGATASLIAFLSF--LRAPSVSEQILPFCVLFGTMATFINLTR 86

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
             ELL+    G S   L+ P L +A+ + IF
Sbjct: 87  RLELLVARAAGISIWQLMMPPLGIALAIGIF 117


>gi|270295684|ref|ZP_06201885.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274931|gb|EFA20792.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 617

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 62/337 (18%), Positives = 134/337 (39%), Gaps = 32/337 (9%)

Query: 17  LMSCLFIVFIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
            M   FI    +++Q L R ++ +      + +L +   Y   +++P   P    +    
Sbjct: 3   FMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPLAILLAALI 62

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              +     ELL +   G S + +++P++     +    F  +N+I PK ++ +  L   
Sbjct: 63  TFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQTKLWTLLIS 122

Query: 136 AQLALTFSYLEENLFFRLDD--DLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQSG 192
            +       + E +F+   D  +LY+K  K      L  + I +  +  +  +I  + SG
Sbjct: 123 MKQKSPEVDIPEGVFYDEIDGYNLYVK-HKNRKTGMLYDVLIYNFEKGFENAQIIKSDSG 181

Query: 193 SIDL--DRQAIILN--DGEV---------------HRKSPISKDISIMKFKS------YT 227
            +++  D+Q + L+   GE                +R+    +  +I++F S        
Sbjct: 182 RLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFREKHAIIEFNSDFNMVDAG 241

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIF 285
           + +  +NS  + +   D +   L N +     Y+  +  TY+  +   K  T  +     
Sbjct: 242 IMSNQSNSKDMRMLQADIDSMKLQNDSVGRGYYKEAMAGTYKVTASLSKEDTLKIEKAYL 301

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           G  ++ +    A + Q++K+    +S + S G  W F
Sbjct: 302 GEYNVDSLYNVATLMQKQKVISTAVSRAESAGSDWSF 338


>gi|160881617|ref|YP_001560585.1| hypothetical protein Cphy_3495 [Clostridium phytofermentans ISDg]
 gi|160430283|gb|ABX43846.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
          Length = 617

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL--------LNPNPNNPNYRPELLE 266
             +IS+ + K+YT Q+ S  +S ++L      ++ L         NP  N  ++ P    
Sbjct: 14  GDNISMTRKKTYTYQSRSNTNSVLLLFPLFLIITILPLIVSIHSFNPGLNQFDWYPN--T 71

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
              ++F     QW F  I GL +++   +  L ++  K H IFI L I
Sbjct: 72  DLANDFFLYYKQWFFVFISGLCALILVIRAFLNKKEVKFHKIFIPLVI 119


>gi|254372627|ref|ZP_04988116.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570354|gb|EDN36008.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
          Length = 353

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 19/163 (11%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P +L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +
Sbjct: 58  LPGILYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMV 117

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
               I P  +   +Q+          +Y   +L+F+  D  ++ IS   P      GI  
Sbjct: 118 FGGYIAPILQ---RQVDTN-----MVTYNTHDLWFKTPDG-FMNISNIEPTQGKAYGIRK 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVH 209
              +D +  +I YA+S +   D  A + N         DG+ H
Sbjct: 169 FMVQDNKVREIRYAESATYINDASANVFNIRKIIFPASDGQKH 211


>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
 gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
          Length = 388

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 89/208 (42%), Gaps = 15/208 (7%)

Query: 37  NLVSSSTES---LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTG 93
            LV   TE+   L I L++    IP  +    P    +      + ++ ++EL+ + + G
Sbjct: 50  ELVRKVTEAGLPLGIALQVLLLQIPQFISYALPMSMLLAALMAYSRLSSDSELIAMRSFG 109

Query: 94  TSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF-- 151
            S   L+ P + +++L++   F+   ++ P      K    KA      S+ E N+F+  
Sbjct: 110 VSIYRLVIPAVVVSLLVTSLTFVFNELVVPAANYQSKITLDKALKKERPSFQERNIFYPE 169

Query: 152 ----RLDDDLYI-KISKY-----NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI 201
               +L +   + KI ++          ++G+ I+D   T   +I  ++S   +      
Sbjct: 170 YQKVKLPNGKKVNKIKRWFYAEQFDGKQMRGLTILDFSQTGLEQIVTSESAVWNPTENLW 229

Query: 202 ILNDGEVHRKSPISKDISIMKFKSYTLQ 229
              DG ++  SP +   +I++F+   LQ
Sbjct: 230 DFLDGTIYIISPDASYRNILRFQKQKLQ 257


>gi|300871686|ref|YP_003786559.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
 gi|300689387|gb|ADK32058.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
          Length = 431

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 21/202 (10%)

Query: 1   MKSFELYI-LRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIP 58
           MK  + YI L  IG  F+   LF  FI +VIQ+L  +  L+ ++   +   L+I  Y++P
Sbjct: 1   MKKIKKYIILEAIG-PFIAGVLFFTFI-FVIQLLPELFKLILNNGAPIWTSLEIFVYMLP 58

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    M        ++ + E++++   G S + +  P++ L     +F     
Sbjct: 59  FNVAITIPMSILMAGIMGYGRLSSDNEIIVMRALGFSHMRIYAPIIILGFFTFLFSLFFN 118

Query: 119 NIIEPKCRSTIKQL--------SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
           N++  +     + L         + A   L F+Y+        D +L I  + Y+ NN +
Sbjct: 119 NVVMTESNYRYRALFSYIINIRPSIAVGKLEFAYIS-------DINLSIG-AYYSDNNGM 170

Query: 171 QGIFIVDSRDTQTHKIYYAQSG 192
             + I D  ++Q  +I  A+SG
Sbjct: 171 SNVVIYDG-NSQARRIITAKSG 191


>gi|170725440|ref|YP_001759466.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
 gi|169810787|gb|ACA85371.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
          Length = 352

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 47/264 (17%), Positives = 109/264 (41%), Gaps = 17/264 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  +  L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MRILDFYIARTLVSTSALCLLILTGLSGIIKWVDQLRVVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITLSAMKTAVPLMLIIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A      +       ++ + D DL++ I +    N L+ I +   + 
Sbjct: 121 GAPAAEQKAYELQATKISGGSLIKSSRGIWAK-DGDLFVNIGEVEDINNLRNITLYKFNS 179

Query: 180 DTQTHKIYYAQSG-------------SIDLDRQAIILNDGEVHR-KSPISKD-ISIMKFK 224
           D    +  +A+ G               DL  + + L D  ++R +S ++ D +S++  K
Sbjct: 180 DLALTRTIHAERGVFSKDHWRLLDVRQTDLTDERVTLTDLTLYRWESTLTPDKLSVVSVK 239

Query: 225 SYTLQTESANSSTIVLKANDQNLS 248
             +L  +        L+ N+Q+ S
Sbjct: 240 PESLSIQGLIGYLDYLEVNNQDAS 263


>gi|242279362|ref|YP_002991491.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122256|gb|ACS79952.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 386

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 132/330 (40%), Gaps = 54/330 (16%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLI-KPVLFLAILLSIF 113
           YL P  L M+TP    +        MN + E+  + + G S   L+  P++F  +     
Sbjct: 55  YLCPFFLLMLTPIATMLSIFLTFLRMNADNEITALKSGGLSLYRLLPAPIIFCLLCTGAD 114

Query: 114 LFIS--------ENIIEPKCRSTIKQLS-AKAQLALTFSYLEEN---LFFRLDDDLYIKI 161
            + S        EN      R+ + + +  ++QLA+      +N   L F  D       
Sbjct: 115 FYFSLYGLSWGTENF-----RNALMEFARTQSQLAIQPGVFNKNFPGLVFYAD------- 162

Query: 162 SKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKD 217
                +  ++ +F+ D+          A  G I  D    R  I L +G+++++      
Sbjct: 163 GVDEKSGIMRSVFVRDNTRKGMTATIVAPLGEIRTDPKMGRLLIHLENGKIYQQE--KDQ 220

Query: 218 ISIMKFKSYTLQTESANSSTIVLKAND-----------QNLSFLLNPNPNNPNYRPELLE 266
           +S++KFK+Y ++   AN    +LK  D           + L  +        +  P   +
Sbjct: 221 LSVLKFKNYDVRIPLAN----ILKGYDVDELRPKEMSWKKLVRISRAGDRAGDIDPGFFK 276

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
             + E  KRL   +  ++ G+ ++  A    + R  K+ + + IS+ + F V++    + 
Sbjct: 277 KVQVEVQKRLALPVACLVLGMFAVPIA---CIFRGLKQQYGLIISMGL-FLVYYTMLSLG 332

Query: 327 HKIEQNPYYIPILYLFL----FCISSIFLL 352
               ++    P++ L+L    F I S+ LL
Sbjct: 333 VTFGESGVLTPVIGLWLPNITFAIISVVLL 362


>gi|15834847|ref|NP_296606.1| hypothetical protein TC0227 [Chlamydia muridarum Nigg]
 gi|270285013|ref|ZP_06194407.1| hypothetical protein CmurN_01133 [Chlamydia muridarum Nigg]
 gi|270289036|ref|ZP_06195338.1| hypothetical protein CmurW_01188 [Chlamydia muridarum Weiss]
 gi|301336411|ref|ZP_07224613.1| hypothetical protein CmurM_01210 [Chlamydia muridarum MopnTet14]
 gi|7190266|gb|AAF39099.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 354

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           + +++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +I P+L  + 
Sbjct: 48  VFRVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMIIFPILITSG 107

Query: 109 LLSIFLFISENIIEPKCR-STIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNP 166
           +L  F F + + +   CR  T K++   A +A+T  + L + L  + +D ++I I  +  
Sbjct: 108 ILCCFNFYTCSELASICRFQTGKEI---ANIAMTSPALLLQTLQKKENDRIFIAID-HCG 163

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            +    + I    + +   I + ++   D+++ ++   +  V  K P+  +        +
Sbjct: 164 KSKFDNVIIALKHNQEISNIGFVETIIPDVNKDSVQAKNVLVISKVPLFSEARTSNPNEF 223

Query: 227 TLQT 230
            L+T
Sbjct: 224 YLET 227


>gi|300718541|ref|YP_003743344.1| permease [Erwinia billingiae Eb661]
 gi|299064377|emb|CAX61497.1| putative permease [Erwinia billingiae Eb661]
          Length = 366

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 17/226 (7%)

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +  ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  +I   ++
Sbjct: 57  PEMAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTAIVAAVN 116

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
              + P       +++  A+     + L    F +  D   +   +    N    +F+  
Sbjct: 117 VAWLGPWSSRYQSEVTQNAKANPGAAALAAGQFQQSGDGQSVMFIENVKGNNFGNVFLAQ 176

Query: 178 SRDTQTHK--IYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            R     +  +  A  G +       Q + L+ G     + + +D  I  F++Y      
Sbjct: 177 LRPKGNARPSVVLADKGHMTQGPDGSQIVTLDKGTRFEGTAMLRDFRITDFENYQ---AI 233

Query: 233 ANSSTIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
                +VL  ND + + F      + P +R        SEFH RLT
Sbjct: 234 VGHQDVVLDPNDAEQMDFKTLAQSDKPEFR--------SEFHWRLT 271


>gi|312968689|ref|ZP_07782898.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312286907|gb|EFR14818.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 359

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 15/221 (6%)

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS--RITLIKPVLFLAILLSIFL 114
           +P  L  ++PF   +     L  +++N+EL  I +TG S  RI L+   L   IL ++ L
Sbjct: 57  LPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV--ALVAGILWTVSL 114

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              +  +    +    Q+ + A        +  N+ +    + ++ +   N       + 
Sbjct: 115 GAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVE 174

Query: 175 IVDSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKS 225
           I   RD  + + Y YA+S +I+ D+  I+   G  H+K    K+             F S
Sbjct: 175 IFHYRDDLSLESYIYARSATIEDDKTWIL--HGVNHKKWLNGKETQETSDYLAWQSTFTS 232

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
             L+  S   +T  ++  +  + +L      +  YR  L E
Sbjct: 233 MNLEELSMPGNTFSVRQLNHYIHYLQETGQPSSEYRLALWE 273


Searching..................................................done


Results from round 2




>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254547819|gb|ACT56866.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV
Sbjct: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI
Sbjct: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD
Sbjct: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL
Sbjct: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR
Sbjct: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK
Sbjct: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360

Query: 361 I 361
           I
Sbjct: 361 I 361


>gi|150395989|ref|YP_001326456.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027504|gb|ABR59621.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 390

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 209/360 (58%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALANVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFTIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R +++++ A A   L  S ++EN F ++ D LY+++        L GIF+ D+RD
Sbjct: 121 VEPYSRVSVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLHGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                +YYA+ G++D  R A+++ DGEVHRK P   D+SI+KF SY       +  +   
Sbjct: 181 PNFELVYYAREGAVDEGRSALVMKDGEVHRKLPD-GDVSIIKFDSYAFDLTDLTRMTGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +LL+P+P++  Y+      + +E H+R T+W FP++FGLI++VA+     
Sbjct: 240 NIRAKDRDLFYLLDPDPDDEAYK-RAPRAFAAELHRRFTEWTFPLLFGLIALVASSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  ++HP+  +L  +  + W   Y  +  E + +++P++YL      ++ +  +    
Sbjct: 298 SHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLIPLATGALAIQQLASNR 357


>gi|190891136|ref|YP_001977678.1| permease [Rhizobium etli CIAT 652]
 gi|190696415|gb|ACE90500.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 403

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 133/361 (36%), Positives = 221/361 (61%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILVRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      + +    
Sbjct: 191 PAYELIYYAKEGAVDDSGTTLIMHDGEVHRKTPD-GNVSVINFDSYSFDLSDMTESRGQA 249

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LKA+D++L FL NP+PN+ +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 250 TLKASDRDLWFLFNPDPNDKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 307

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIKK 356
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY       I SI  L + K
Sbjct: 308 SHREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLYGLPIVSSIVSIIFLSLHK 367

Query: 357 K 357
           +
Sbjct: 368 R 368


>gi|86357092|ref|YP_468984.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281194|gb|ABC90257.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 393

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 129/356 (36%), Positives = 218/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  L++P+L LA ++S+F F  +NI
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRTILVRPILLLAAVISVFSFFVDNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+      + +    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTPD-GNVSVINFDSYSFDLSDMTESRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LKA+D++L FL NP+PN+ +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLKASDRDLWFLFNPDPNDKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L  +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALGYAFALRWAAFYAANQIDTDPEYIAVLYALPIVSSIVSIIFL 353


>gi|241203949|ref|YP_002975045.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857839|gb|ACS55506.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 393

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 128/356 (35%), Positives = 219/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA  +S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAAISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+      + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPD-GNVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FL+NP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLINPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353


>gi|15964907|ref|NP_385260.1| hypothetical protein SMc00584 [Sinorhizobium meliloti 1021]
 gi|307300977|ref|ZP_07580746.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317712|ref|ZP_07597150.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074086|emb|CAC45733.1| Hypothetical transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896474|gb|EFN27222.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903932|gb|EFN34518.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 390

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 210/360 (58%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLMGIVWTTQALTNVNLVTDSGQSIIAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L++MN ++EL ++   G+SR+++I+PV+FLA  LS+  F  +N 
Sbjct: 61  VPIILPFALVIGVTQTLSAMNTDSELTVLSAAGSSRMSIIRPVMFLAAGLSVLSFAIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F ++ D LY+++        LQGIF+ D+RD
Sbjct: 121 VEPYSRVAVRKMIATAHADLLASVVQENAFRKITDGLYVQVGARRSGGVLQGIFVADARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                +YYA+ G++D +R A+++ DGEVHRK P   D+SI+KF SY       +  +   
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLPD-GDVSIIKFDSYAFDLTDLTRMAGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +LL+P+P++  Y+   L  + +E H+R T+W FP++FGLI++V +     
Sbjct: 240 NIRAKDRDLFYLLDPDPDDEAYKRAPL-AFTAELHRRFTEWTFPLLFGLIALVVSSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  ++HP+  +L  +  + W   Y  +  E + +++P++YL      ++ +  +    
Sbjct: 298 SHREARVHPMVSALGAALVIRWMTFYAANSAEDSVWFVPLMYLVPLVTGALAIQQLASNR 357


>gi|240850232|ref|YP_002971625.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
 gi|240267355|gb|ACS50943.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
          Length = 396

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 213/362 (58%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YIL+ +   F    +  V ++W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIEFYILKRVLVLFSSVMIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T +L++M++++EL +I+ +G  + T+ KP+L LAI+ S   F   N 
Sbjct: 61  VFLVIPFALVIAITTILSAMHQDSELAVINASGFPKSTVWKPILLLAIVASCISFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D RD
Sbjct: 121 VVPQARLHMRQMLASAHFDLINLFINEGSFQKLANNLYIEIGERNPNGTLERLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   YYA   SI  ++    ++LN+GE+ R +  +  +SI++F SYT        +  
Sbjct: 181 PKTDLFYYATDASIVSNKNGSFLVLNNGEIERVNHQNNSVSIVQFSSYTFSLGEFIPSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   D++LS+L NP+P +P Y+ + L+ Y++EFH+RLTQWL+P++F LI++ AA   
Sbjct: 241 APTLYPKDRSLSYLQNPDPKDPYYQRKPLQ-YKAEFHRRLTQWLYPIVFSLIALAAAGDV 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +     F ++++SF V+W   +   K + +  YIP+LY+     S+    M+  
Sbjct: 300 CSHRQARH-SANFSAIALSFLVYWIGYFFAEKAKNDLAYIPLLYIMPIGTSAFVFFMLLT 358

Query: 357 KY 358
            +
Sbjct: 359 NH 360


>gi|227821476|ref|YP_002825446.1| putative permease protein [Sinorhizobium fredii NGR234]
 gi|227340475|gb|ACP24693.1| putative permease protein [Sinorhizobium fredii NGR234]
          Length = 390

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 213/360 (59%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R     FL + L ++ I W  Q L  +NLV+ S +S+   LK++  ++P+V
Sbjct: 1   MKLIERYIFRRATIMFLATLLPLLGIVWTTQALSNVNLVTDSGQSIFAFLKLATLILPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +  T  L+ MN ++EL +++  G+SR+++I+PV++LA+ LS+  F+ +N 
Sbjct: 61  VPIILPFALLIGVTQTLSVMNTDSELTVLNAAGSSRMSVIRPVIYLAVGLSVLSFVIDNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++++ A A   L  S ++EN F R+ D LY++++       L GIF+ DSR+
Sbjct: 121 VEPYSRVAVRKMIATAHADLLSSVVQENAFRRITDGLYVQVAARRSGGVLHGIFVADSRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                +YYA+ G++D +R A+++ DGEVHRK P    +S++KF SY       +  +   
Sbjct: 181 PNFELVYYAREGAVDEERSALVMKDGEVHRKLPDGG-VSVIKFDSYAFDLTDMTRTAGEA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++A D++L +L++P+PN+P+Y+   L  + +E H+RL++W +P++FGLI++V +     
Sbjct: 240 TIRAKDRDLFYLIDPDPNDPSYKRSPL-AFTAELHRRLSEWTYPLLFGLIALVVSSDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +  ++HP   ++  +  + W   Y  +  E + +++P++YL      ++ +  +    
Sbjct: 298 SHREARVHPTISAVGAALVIRWMTFYAGNSAEDSIWFVPLMYLVPLMTGALAIRQLASNR 357


>gi|116251335|ref|YP_767173.1| hypothetical protein RL1569 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255983|emb|CAK07064.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 393

 Score =  323 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 126/356 (35%), Positives = 218/356 (61%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVISVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I++ GEVHRK+P   ++S++ F SY+      + +    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHQGEVHRKTPD-GNVSVINFDSYSFDLSDMTESRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FL NP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLFNPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY      S + ++ +
Sbjct: 298 SHREARLHPMVSALAYAFAMRWAAFYAANQIDTDPEYIAVLYAIPIVSSIVSIVFL 353


>gi|222085453|ref|YP_002543983.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722901|gb|ACM26057.1| permease protein [Agrobacterium radiobacter K84]
          Length = 391

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 138/363 (38%), Positives = 226/363 (62%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE YI+R +G  FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++PT+
Sbjct: 1   MKLFETYIVRRVGMMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATLILPTI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +++  G  R  +I+P++ LAI +S+F F  +N+
Sbjct: 61  IPVVLPFALVIGITQTLTAMNSDSELTVMEAAGARRSIIIRPIMILAIAISVFSFFVDNM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EPK R   +Q+ A+A   L  + +EE  F R++D LY++I++      L+G+F+VDSRD
Sbjct: 121 VEPKARVAARQMVAEAYADLLSTVIEEKNFRRIEDGLYVQITQRMSGRILKGLFVVDSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D    ++++ DGEVHRK+    D+S++KF SY+      + +    
Sbjct: 181 PAFDLIYYAKEGAVDASGSSLLMRDGEVHRKTSD-GDVSVIKFDSYSFDLSDMTQSRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A D++L FLLNP+PN+ +Y+ +    YRSE H+RLT W  P IF LIS+V A     
Sbjct: 240 TLRAGDRSLGFLLNPDPNDADYKAKPSG-YRSELHRRLTDWALPAIFALISLVIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS--SIFLLMIKK 356
             +  ++HP+  +L+I+F + W   Y  ++IE  PY++ ILY      +  +IFLL   +
Sbjct: 298 SHREARLHPMVSALTIAFALRWADFYAANQIETAPYFVGILYGINIAATLIAIFLLFRNR 357

Query: 357 KYT 359
           + +
Sbjct: 358 RMS 360


>gi|209548671|ref|YP_002280588.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534427|gb|ACI54362.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 393

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 128/342 (37%), Positives = 215/342 (62%), Gaps = 5/342 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 1   MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 61  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++ ++Q+ A+    L  S +EE  F +LD+ LY++ISK      L+G+F+ D RD
Sbjct: 121 VEPRAKTVVRQMIAETYADLLSSVIEEKTFRKLDEGLYVQISKRMAGRMLKGLFVADERD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTI 238
                IYYA+ G++D     +I+++GEVHRK+P   ++S++ F SY+      + N    
Sbjct: 181 PAYELIYYAKEGAVDDTGTTLIMHEGEVHRKTPD-GNVSVINFDSYSFDLSDMTENRGQA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L+A+D++L FLLNP+P + +Y     ++YR+E H+RLT W+ PV+F L S+  A     
Sbjct: 240 TLRASDRDLWFLLNPDPADKDYTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR- 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             +  ++HP+  +L+ +F + W   Y  ++I+ +P YI +LY
Sbjct: 298 SHREARLHPMVSALAYAFALRWAAFYAANQIDTDPEYIAVLY 339


>gi|222148153|ref|YP_002549110.1| hypothetical protein Avi_1543 [Agrobacterium vitis S4]
 gi|221735141|gb|ACM36104.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 399

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 121/359 (33%), Positives = 209/359 (58%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR + + FL + L ++ I W  Q+L RINLV+ + +S+     ++  ++PT+
Sbjct: 6   MKLLESYILRRVAQMFLTALLPVLAIIWTTQVLARINLVTDTGQSIGSFATLATLILPTI 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G SR  +++P+L  A+ +S+   +  N 
Sbjct: 66  IPIVMPFALVIGITQSLTAMNNDSELAVIDAAGASRAVILRPILLFALAISVITLVITNE 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++PK +   +Q+ A A   L  + +EE  F +++D LY++IS+      L+G+F+ D RD
Sbjct: 126 VQPKVKVAARQMIANAYADLLSTVIEEKTFRKVEDGLYVQISQRLAGRVLKGLFVADYRD 185

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--I 238
                IYYA+ G++D    A+I++DGEV RK+P    +SI++F SY         +    
Sbjct: 186 PAYSLIYYAREGAVDETGTALIMHDGEVQRKAPG-GTVSIVRFDSYAFDLSDLTETRGKA 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            ++ +D++LSFLLNP+ N+ +Y+      YR+E HKR+T+WL P  F LIS+  A     
Sbjct: 245 KMRPSDRSLSFLLNPDTNDDDYKDH-PGEYRAELHKRMTEWLLPFAFALISLAIAGDAR- 302

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +  ++HP+  +L+++  + W   Y  +K E N  +I ++Y      ++I  LM+ ++
Sbjct: 303 SHREARLHPMVSALTLALVLRWLTFYAANKSESNAAFIVLMYATPLASAAIATLMLMRQ 361


>gi|163868028|ref|YP_001609232.1| hypothetical protein Btr_0827 [Bartonella tribocorum CIP 105476]
 gi|161017679|emb|CAK01237.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 396

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 125/362 (34%), Positives = 211/362 (58%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YIL+ +   F    +  V ++W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIEFYILKRVFFLFSSVLIAAVGVSWTVQILARINFLTTSKQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T  L++MN+ +EL +I+ +G  + T+ KPVL LAI+ S   F   N 
Sbjct: 61  IFLVIPFALVIAVTTTLSAMNQESELAVINASGFPKSTVWKPVLLLAIVASCISFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NPN TL+ +FI D RD
Sbjct: 121 VVPQARLHMRQMLASAHFDLINLFISEGSFQKLANNLYIEIGERNPNGTLERLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   YYA   SI  ++    +ILN+GE+ R +  +  +SI++F +YT        +  
Sbjct: 181 PKTDLFYYATKASIVSNKNGRFLILNNGEIERVNHENNSVSIVQFSAYTFSLGEFIPSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L   D++LS+L NP+P +P Y+ + L+ Y++EFH+RLTQWL+P++F LI++ AA   
Sbjct: 241 TPTLYPKDRSLSYLQNPDPKDPYYQRKPLQ-YKAEFHRRLTQWLYPIVFSLIALAAAGNV 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +     F ++++SF V+W   +   K + +  Y+P+LY+     S     M+  
Sbjct: 300 GSHRQARYCA-NFSAIALSFLVYWIGYFFAEKAKNDLAYVPLLYITPIGTSLFVFFMLLT 358

Query: 357 KY 358
            +
Sbjct: 359 NH 360


>gi|319404056|emb|CBI77644.1| putative permease, YjgP/YjgQ family [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 382

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 206/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FELYIL+ I   F    L  V I+W +QIL R+N ++++ ++   +L  S  LIP+V
Sbjct: 1   MRIFELYILKRIFILFSAVLLGAVGISWTVQILARVNFLTTNGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L +MN+++EL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLIMPFALVVAITTILLTMNQDSELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNP++P+Y+ + L+ YR+E H+R T+ L+P++F LI+I  A   
Sbjct: 241 TPNIYPKDRPLSYLFNPNPSDPHYQRKPLQ-YRAELHRRFTECLYPIVFALIAIAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ  +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+ K
Sbjct: 300 HSYRQ-ARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYVIPIGISLLTFFMLLK 358

Query: 357 KY 358
            Y
Sbjct: 359 DY 360


>gi|49475339|ref|YP_033380.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
 gi|49238145|emb|CAF27353.1| hypothetical protein BH05450 [Bartonella henselae str. Houston-1]
          Length = 396

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 207/363 (57%), Gaps = 6/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAIGISWTVQILARINFLTTSKQTLLTILQFSISLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II  +G  + T+ +P+L +A + S   F   N 
Sbjct: 61  IFLVIPFALLIAITSTLSAMNQDSELAIISASGFPKSTVWRPILLIAFVASCASFFIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VIPQARLNMRQMLATTHYDLINLFISEGSFQKLANNLYIEIGQRNPDGTLAHLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   S+  ++    ++LN+GE+ R +  +  +SI++F SYT        N  
Sbjct: 181 PKIDLFYYATKASVVSNKNGHFLVLNNGEIERINHQNDSVSIVQFSSYTFSLGEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  L   D+ LS+L NPNP +  Y+ + L+ YR+EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 TPTLYPKDRPLSYLRNPNPKDLYYQRKPLQ-YRAEFHRRLTEWLYPIVFSLIALAAAGDT 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ       F +++ SF V+W   +   K + +  Y+P+LY+    +S +   M+  
Sbjct: 300 RSYRQVGN-SANFSAIAFSFLVYWIGYFAAEKAKSDLAYVPLLYIIPIGVSILVFFMLLT 358

Query: 357 KYT 359
             T
Sbjct: 359 NRT 361


>gi|319405494|emb|CBI79113.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 382

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 133/362 (36%), Positives = 204/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVMLGAIGISWTVQILARINFLTTSGQTFLTILYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN++TEL +I  +G S+  + KP+L LAIL S   F   N 
Sbjct: 61  TSLVIPFALVIAITIILSTMNQDTELAVISASGISKNIVWKPILLLAILASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A A   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQMLANAHSDLISLFIREGSFQELAKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF SYT        N  
Sbjct: 181 HQLGLFYYAAKGAIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSYTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NP+PN+P+Y+ +  + YR+EFH+R T+ L+P++F LI+IV     
Sbjct: 241 TPNIYPKDRPLSYLSNPSPNDPHYQRKPFQ-YRAEFHRRFTECLYPIVFALIAIVIVGNA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ   I   F +++ S  ++W   +   K E NP YIP+LY+    I S+   M+  
Sbjct: 300 RSYRQ-AHIFETFSTITFSLLIYWLGYFFAQKAENNPSYIPLLYIIPIGICSLTFFMLIT 358

Query: 357 KY 358
            +
Sbjct: 359 DH 360


>gi|49474101|ref|YP_032143.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
 gi|49239605|emb|CAF25962.1| hypothetical protein BQ04630 [Bartonella quintana str. Toulouse]
          Length = 396

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 208/362 (57%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++L  +L+ S  L+P+V
Sbjct: 1   MRIIELYILKRILILFSAVMIAAISISWTVQILARINFLTTSRQTLLTVLQFSLSLVPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +  T+ L++MN+++EL II   G  + T+ KP+L LA++ S   F+  N 
Sbjct: 61  IFLVIPFALVIAITSTLSAMNQDSELAIISAAGFPKSTVWKPILLLALIASCASFLIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A A   L   ++ E  F +L ++LYI+I + NP+ TL  +FI D RD
Sbjct: 121 VAPQARFHMRQMLANAHSDLINLFINEGSFQKLANNLYIEIGERNPDGTLGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +    YYA   SI  ++    ++LN+GE+ R +  +  +SI++F  YT        N  
Sbjct: 181 PKIDFFYYATKASIVSNKSGNFLVLNNGEIERINHQNDSVSIVQFSFYTFSLSEFIPNDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+LLNP+P +P Y+   L+ YR+EFH+RLT+WL+ ++F LI++ AA   
Sbjct: 241 TPTIYPKDRPLSYLLNPDPKDPYYQRRPLQ-YRAEFHRRLTEWLYSIVFSLIALAAARDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ +     F +++ S  V+W   +   K + +  Y+P+LY+    +S +   M+  
Sbjct: 300 RSYRKTRNFA-NFSAIAFSLLVYWIGHFFAEKAKSDLAYVPLLYITPIGVSILVFFMLLT 358

Query: 357 KY 358
            +
Sbjct: 359 NH 360


>gi|319408320|emb|CBI81973.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 396

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 206/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ +   F    +  + I+  +Q+L RI+ +++S ++   +L  S  L+P V
Sbjct: 1   MRIIELYILKRVFILFSAVMVAAIGISLTVQVLARIDFLTTSGQTFLTVLYFSSLLVPPV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF   +  T +L++MN+++EL II  +G S+ T++KP+L LAI  +   F   N 
Sbjct: 61  ISLIIPFALVIAITTILSTMNQDSELAIISASGFSKNTVLKPILLLAIFTACTSFSIANF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++Q+ A     L   ++ E  F  L ++LYI+I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLNMRQMLANTHSDLINLFIREGSFQALTNNLYIEIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
           ++   +YYA+ G+I  ++    ++LNDGE+ R +  +  +SI+KF SYT        N+ 
Sbjct: 181 SKIDLLYYAKKGAIVSNKNGNFLVLNDGEIERVNYQNDSVSIIKFNSYTFSLSEFIPNNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +   D+ LS+LL+P+P +P Y+   L+ Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 VPTIYPKDRPLSYLLHPDPYDPYYQRNPLQ-YKAEFHRRLTEWLYPIVFALIAVAAAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ      I  +++ S  ++W   +   K + +  Y+P+LY+    +S +   M+  
Sbjct: 300 RSHRQ-AHTSAIVFTITFSLLIYWIEYFFAEKTKNDLTYVPLLYITPIGVSVLIFFMLLT 358

Query: 357 KY 358
             
Sbjct: 359 NR 360


>gi|319407069|emb|CBI80706.1| putative permease, YjgP/YjgQ family [Bartonella sp. 1-1C]
          Length = 382

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 203/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    L  V I+W +QIL RIN ++++ ++   ++  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVLLGAVGISWTVQILARINFLTTNGQTFLTIVYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ PF   +  T +L++MN+++EL +I  +G S+  + KP+L LA+L S   F   N 
Sbjct: 61  TSLIIPFALVVAITTILSTMNQDSELAVISASGISKNIVWKPILLLAVLASFTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A +   L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPHARLNMRQILASSHSDLISLFIREGSFQELTKNLYIEIGERNANGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA  G+I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 PQLGLFYYATKGAIVNNKKGKFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFIPNKK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NPNPN+ +Y+ + L+ YR+E H+R T+ L+P++F LI I  A   
Sbjct: 241 TPNIYPKDRPLSYLFNPNPNDSHYQRKPLQ-YRAELHRRFTECLYPIVFALIVIAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ  +I   F +++ S  ++W   +   K E NP YIP+LY+    IS +   M+  
Sbjct: 300 HSYRQ-ARISATFSTITFSLLIYWLGYFFARKTENNPSYIPLLYIIPIGISLLIFFMLLT 358

Query: 357 KY 358
            Y
Sbjct: 359 DY 360


>gi|121602513|ref|YP_988823.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
 gi|120614690|gb|ABM45291.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
           KC583]
          Length = 396

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 126/364 (34%), Positives = 204/364 (56%), Gaps = 8/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F       V I W +QIL RIN +++S ++    L  S  LIP+V
Sbjct: 1   MRILELYILKRIFILFSAVITATVCIIWTVQILARINFLTTSGQTFLTALYFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +     L+ MN+++EL II  +G  + T+ KP+LFLAIL S   F   N 
Sbjct: 61  ISLVIPFALMIAIITTLSRMNQDSELTIISASGIPKTTIWKPILFLAILASCASFFITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R  ++++ A A   L   ++ E  F +L ++LYI I +  P+ T+  +FI D RD
Sbjct: 121 VAPQARLHMREMLASAHSDLINLFIHEGSFQKLTNNLYIGIGERYPDGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +   +YYA  G+I  ++    ++LN+GE+ R +  +  +SI+KF SYT        N  
Sbjct: 181 PKIDLLYYATKGAIVSNKSGNILVLNNGEIKRLNHQNDSVSIIKFSSYTFNLSEFIPNDR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +   D+ LS+L  P+P++PNY+ + L+ Y++EFH+RLT+WL+P++F LI++ AA   
Sbjct: 241 IPTIYPKDRPLSYLYRPDPDDPNYQRQPLQ-YKAEFHRRLTEWLYPIVFALIAVAAAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL--LMI 354
              RQ  +I   F ++  S  ++    + + K E N  YIP+LY+     S +    L+I
Sbjct: 300 RSYRQ-ARISTTFFAIIFSLLIYLVRYFFVEKTENNLAYIPLLYITPLGTSILIFFRLLI 358

Query: 355 KKKY 358
            +K 
Sbjct: 359 NRKM 362


>gi|13476526|ref|NP_108096.1| hypothetical protein mll7866 [Mesorhizobium loti MAFF303099]
 gi|14027287|dbj|BAB54241.1| mll7866 [Mesorhizobium loti MAFF303099]
          Length = 400

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 210/363 (57%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     FL + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFLAALVWTLAIVWTTQVLAKIDLVTDSGQSSLTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL++++  G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELVVVNAAGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAQSRADLLSLIIQEGTFRKIEDGLFLQIGERLPDNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
              + +YYA++GS+      + +++NDG +HRK+ ++ D+S+++F SY     +  A +S
Sbjct: 181 EGVNLVYYAKTGSVVERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAAS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   DQ   +LLNPN N+  Y+ +  + YR+E  +R ++WL+ ++F LI++  A   
Sbjct: 240 EVTLLPKDQTTQYLLNPNVNDKLYQ-QAPQQYRAEIDQRFSEWLYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I  
Sbjct: 299 R-SHREARVNPLITAITISLFVRWLGFFAASKADEVPQYAYMVYGVPIVASAVAIWFIVS 357

Query: 357 KYT 359
             T
Sbjct: 358 NRT 360


>gi|319898731|ref|YP_004158824.1| permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
 gi|319402695|emb|CBI76241.1| putative permease, YjgP/YjgQ family [Bartonella clarridgeiae 73]
          Length = 385

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 130/358 (36%), Positives = 203/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYIL+ I   F    +  + I+W +QIL RIN +++S ++   +L  S  LIP+V
Sbjct: 1   MRILELYILKRIFLLFSAVMIGAIGISWTVQILARINFLTTSGQTFLTVLHFSSLLIPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V PF   +  T +L++MN+++EL +I  +G  +  + KP+L LAIL S+  F   N 
Sbjct: 61  TSLVMPFGLVIAITIILSTMNQDSELAVISASGIPKNIIWKPILLLAILTSLTSFSITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P  R  ++Q+ A     L   ++ E  F  L  +LYI+I + N N T+  +FI D RD
Sbjct: 121 IAPNARLNMRQMLANTHSDLINLFIREGSFQELTKNLYIEIGETNTNGTIGRLFIADQRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            Q    YYA+ G I  +++   +ILNDGE+ R    + ++SI+KF S+T        N  
Sbjct: 181 RQFGLFYYAKKGIIVNNKKGNFLILNDGEIERIDYKNDNVSIIKFSSHTFSLSEFITNKR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  +   D+ LS+L NP+PN+P+Y+ + L+ YR+EFH+RLT+ L+P++F LI++  A   
Sbjct: 241 TPNIYPKDRPLSYLSNPDPNDPHYQRKPLQ-YRAEFHRRLTECLYPIVFALIAVAIAGDA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ   I   F  +S S  ++W   +   K E NP YIP+LY+    IS +   M+
Sbjct: 300 RSYRQT-HISSTFSVISFSLLIYWLGYFFAKKTENNPVYIPLLYIIPIGISILTFFML 356


>gi|153009928|ref|YP_001371143.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561816|gb|ABS15314.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 402

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 204/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIIQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY       ++   
Sbjct: 181 PSLDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A   
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPL-RYKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  ++   F ++S +  V+W   +   + +++  YI ++YL    +  +    +  
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVVMYLVPAAVILVTGFALAT 358

Query: 357 KY 358
             
Sbjct: 359 GR 360


>gi|260466946|ref|ZP_05813128.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029243|gb|EEW30537.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 400

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 209/363 (57%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MTVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVASLILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++ +G SR T+++P++ LA+  S+F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNASGASRWTIVRPIMLLALAASVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A+++  L    ++E  F +++D L+++I +  P+N L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVAESRSDLLSLIIQEGTFRKIEDGLFLQIGERLPDNKLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
              + +YYA++GSI      + +++NDG +HRK+ ++ D+S+++F SY     +  + ++
Sbjct: 181 EGVNLVYYAKTGSIIERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMSAAN 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   DQ   +LLNP+ N+ NY+ +  + YR+E  +R ++W + ++F LI++  A   
Sbjct: 240 QVTLLPKDQTTQYLLNPSANDKNYQ-QNPQEYRAEIDQRFSEWTYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I  
Sbjct: 299 R-SHREARVNPLITAIAISLFVRWLGFFAASKADEIPQYGYMVYGVPIVASAVAIWFIVS 357

Query: 357 KYT 359
             T
Sbjct: 358 NRT 360


>gi|239831521|ref|ZP_04679850.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823788|gb|EEQ95356.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 402

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 204/362 (56%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   FL      V I W +Q+LQRI+ +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFLAVLGAAVGITWTVQVLQRIDFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA ++S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAAVISVVSFLVANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VDPYARMNMRAMIANASADLMNVIVQEGNFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                IYYA  G+I        +++ +GEV R+      +SI+KF SY       ++   
Sbjct: 181 PALDLIYYAADGAIASTPTGDMLLMQNGEVQRRDVSDGTVSIIKFNSYAFDLSQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ LS+LLNP+PN+P  +   L  Y++E H+RLTQWL+PV+F +I++  A   
Sbjct: 241 DFVIYAKDRPLSYLLNPDPNDPILQTRPL-RYKAELHRRLTQWLYPVVFAMIALAFAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  ++   F ++S +  V+W   +   + +++  YI ++YL    +  +    +  
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDAGYIVLMYLVPAAVILVTGFALAT 358

Query: 357 KY 358
             
Sbjct: 359 GR 360


>gi|254718823|ref|ZP_05180634.1| hypothetical protein Bru83_04675 [Brucella sp. 83/13]
 gi|265983808|ref|ZP_06096543.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306838745|ref|ZP_07471579.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
 gi|264662400|gb|EEZ32661.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306406147|gb|EFM62392.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
          Length = 402

 Score =  313 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|23501574|ref|NP_697701.1| hypothetical protein BR0687 [Brucella suis 1330]
 gi|254701470|ref|ZP_05163298.1| hypothetical protein Bsuib55_11511 [Brucella suis bv. 5 str. 513]
 gi|254704017|ref|ZP_05165845.1| hypothetical protein Bsuib36_08829 [Brucella suis bv. 3 str. 686]
 gi|256060812|ref|ZP_05450972.1| hypothetical protein Bneo5_10667 [Brucella neotomae 5K33]
 gi|261324804|ref|ZP_05964001.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261752013|ref|ZP_05995722.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261754672|ref|ZP_05998381.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306845288|ref|ZP_07477864.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
 gi|23347487|gb|AAN29616.1| membrane protein, putative [Brucella suis 1330]
 gi|261300784|gb|EEY04281.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261741766|gb|EEY29692.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261744425|gb|EEY32351.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|306274447|gb|EFM56254.1| permease YjgP/YjgQ family protein [Brucella sp. BO1]
          Length = 402

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|256369122|ref|YP_003106630.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|255999282|gb|ACU47681.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
          Length = 402

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFTMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|163842957|ref|YP_001627361.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|163673680|gb|ABY37791.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
          Length = 402

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +++LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVRVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|161618656|ref|YP_001592543.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260566734|ref|ZP_05837204.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|161335467|gb|ABX61772.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|260156252|gb|EEW91332.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
          Length = 402

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/358 (31%), Positives = 205/358 (57%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFVLIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+PN+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDPNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|148559016|ref|YP_001258669.1| hypothetical protein BOV_0679 [Brucella ovis ATCC 25840]
 gi|254707609|ref|ZP_05169437.1| hypothetical protein BpinM_11726 [Brucella pinnipedialis
           M163/99/10]
 gi|254709808|ref|ZP_05171619.1| hypothetical protein BpinB_05961 [Brucella pinnipedialis B2/94]
 gi|256031299|ref|ZP_05444913.1| hypothetical protein BpinM2_11718 [Brucella pinnipedialis
           M292/94/1]
 gi|256159413|ref|ZP_05457191.1| hypothetical protein BcetM4_10693 [Brucella ceti M490/95/1]
 gi|256254707|ref|ZP_05460243.1| hypothetical protein BcetB_10510 [Brucella ceti B1/94]
 gi|261221887|ref|ZP_05936168.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261315099|ref|ZP_05954296.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317346|ref|ZP_05956543.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|265988384|ref|ZP_06100941.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|265997850|ref|ZP_06110407.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|148370273|gb|ABQ60252.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|260920471|gb|EEX87124.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261296569|gb|EEY00066.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261304125|gb|EEY07622.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|262552318|gb|EEZ08308.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|264660581|gb|EEZ30842.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
          Length = 402

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|225627184|ref|ZP_03785222.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|260168438|ref|ZP_05755249.1| hypothetical protein BruF5_08728 [Brucella sp. F5/99]
 gi|261757900|ref|ZP_06001609.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|225618019|gb|EEH15063.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|261737884|gb|EEY25880.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
          Length = 402

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|62289649|ref|YP_221442.1| hypothetical protein BruAb1_0706 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699577|ref|YP_414151.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
 gi|189023899|ref|YP_001934667.1| permease [Brucella abortus S19]
 gi|237815139|ref|ZP_04594137.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254688959|ref|ZP_05152213.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
           str. 870]
 gi|254697093|ref|ZP_05158921.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729989|ref|ZP_05188567.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
           str. 292]
 gi|256257207|ref|ZP_05462743.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
           str. C68]
 gi|260545599|ref|ZP_05821340.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260754448|ref|ZP_05866796.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260757667|ref|ZP_05870015.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260761494|ref|ZP_05873837.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883477|ref|ZP_05895091.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297248057|ref|ZP_06931775.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
 gi|62195781|gb|AAX74081.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615678|emb|CAJ10665.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
           Abortus 2308]
 gi|189019471|gb|ACD72193.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
 gi|237789976|gb|EEP64186.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|260097006|gb|EEW80881.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260667985|gb|EEX54925.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260671926|gb|EEX58747.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674556|gb|EEX61377.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260873005|gb|EEX80074.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297175226|gb|EFH34573.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
          Length = 402

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|254713812|ref|ZP_05175623.1| hypothetical protein BcetM6_10745 [Brucella ceti M644/93/1]
 gi|254717130|ref|ZP_05178941.1| hypothetical protein BcetM_12054 [Brucella ceti M13/05/1]
 gi|261218945|ref|ZP_05933226.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261321556|ref|ZP_05960753.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
 gi|260924034|gb|EEX90602.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261294246|gb|EEX97742.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
          Length = 402

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 203/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R   ++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAAMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|294852049|ref|ZP_06792722.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
 gi|294820638|gb|EFG37637.1| hypothetical protein BAZG_00965 [Brucella sp. NVSL 07-0026]
          Length = 402

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASMPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|17987545|ref|NP_540179.1| hypothetical protein BMEI1262 [Brucella melitensis bv. 1 str. 16M]
 gi|225852207|ref|YP_002732440.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|256044380|ref|ZP_05447284.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113223|ref|ZP_05454091.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264285|ref|ZP_05466817.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563732|ref|ZP_05834218.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990798|ref|ZP_06103355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994634|ref|ZP_06107191.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983248|gb|AAL52443.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
           str. 16M]
 gi|225640572|gb|ACO00486.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|260153748|gb|EEW88840.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765747|gb|EEZ11536.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001582|gb|EEZ14157.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094545|gb|EEZ18354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
          Length = 402

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 203/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAIMFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI+I++   + ++ G+FI DS D
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|254693441|ref|ZP_05155269.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 3
           str. Tulya]
 gi|261213694|ref|ZP_05927975.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915301|gb|EEX82162.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 402

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  ELYILR +   F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ 
Sbjct: 1   MRLIELYILRRVAFMFFAVLGAAVGITWAVQVLQRINFLTTSGQTFQTIVQFSSLLIPSA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N 
Sbjct: 61  IPLVMPFALIIAITQTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L    ++E  F +L D+LYI++++   + ++ G+FI DSRD
Sbjct: 121 VEPYARINMRAMIANASADLMHVIIQEGTFRKLADNLYIQVAERRADGSIGGLFIADSRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                IYYA  G+I        +++ +GEV R++     +SI+KF SY       ++   
Sbjct: 181 PTLDLIYYAADGAIASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V+ A D+ L++LLNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A   
Sbjct: 241 DFVIFAKDRPLTYLLNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDS 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  ++   F ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 300 R-SHREARVSASFSAISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 356


>gi|319784423|ref|YP_004143899.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170311|gb|ADV13849.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 400

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 206/363 (56%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R     F+ + ++ + I W  Q+L +I+LV+ S +S     +++  ++P++
Sbjct: 1   MKVVERYIMRRAFVVFMAALVWTLAIVWTTQVLAKIDLVTDSGQSALTFFEVAALILPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +     L+ MN ++EL +++  G SR T+++P++ LA+  ++F F  +N 
Sbjct: 61  IPIVVPFALVVAVAQTLSVMNSDSELAVVNAAGASRWTIVRPIMLLALAAAVFSFAVDNG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  R   + L A ++  L    ++E  F ++DD L++++ +  PNN L GIF+ DSR+
Sbjct: 121 IDPYARQKNRALVASSRADLLSLIIQEGTFRKIDDGLFLQVGERLPNNRLGGIFVADSRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESANSS 236
              + +YYA++GSI      + +++NDG +HRK+ ++ D+S+++F SY        A +S
Sbjct: 181 EGVNLVYYAKTGSIIERGGEKVLMMNDGVIHRKT-LTGDLSVIRFTSYAFDMSAFMAAAS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   DQ   +LLNP+ N+  Y+ +    YR+E ++R ++W + ++F LI++  A   
Sbjct: 240 AVTLLPKDQTTQYLLNPSANDKYYQ-QSPYEYRAEVNQRFSEWTYSMVFALIALAVAGDA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  +++P+  +++IS  V W   +   K ++ P Y  ++Y      S++ +  I  
Sbjct: 299 R-SHREARVNPLITAITISLFVRWLGFFAASKADEIPQYAYMVYGVPIVASAVAIWFIVS 357

Query: 357 KYT 359
             T
Sbjct: 358 NRT 360


>gi|15888448|ref|NP_354129.1| hypothetical protein Atu1108 [Agrobacterium tumefaciens str. C58]
 gi|15156140|gb|AAK86914.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 389

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 131/362 (36%), Positives = 209/362 (57%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T + T+MN ++EL IID  G  R  + +PVL LA +LS+F F   N 
Sbjct: 61  IPVVLPFALVIGITQIFTTMNNDSELAIIDAAGAPRSVMYRPVLILAAVLSLFSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++      L+G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRTIQDGLYVQIAQR-QGRILKGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES---ANSST 237
                IYYA+ G ID    ++ + DGEV +K+P    +SI+KF SY     +      S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPD-GKVSIVKFLSYAFDLSTMSEKQDSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L   D +L FLL+P+ NN +Y+    ET+RSE HKRL+ W+F   F LIS+  A    
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPETFRSELHKRLSDWMFAFSFALISLAIAADSR 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIK 355
              +  ++HP+  +L  +F + W   Y+ ++++Q+  +IP++Y        ++ F+LM  
Sbjct: 298 -SHREARLHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYAVPGLSGAAAAFVLMTG 356

Query: 356 KK 357
           +K
Sbjct: 357 RK 358


>gi|27379218|ref|NP_770747.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352369|dbj|BAC49372.1| bll4107 [Bradyrhizobium japonicum USDA 110]
          Length = 389

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 158/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+  ++P +
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLVVPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L  P  +   ++++ +      
Sbjct: 61  VLIISPIALMIAISHTLNKLATDSEIIVMNAAGFSPFRLFYPFFYATCVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D RD
Sbjct: 121 LAPDGMRRIKQWDAEITADVLTNILQPGRFAQLDKNLTIRIRERLPGGILAGIFIDDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                   A+ G +  +     ++L  G + R     +D +++ F  Y       S    
Sbjct: 181 PNERVSIVAEHGEVMKNDTGSFLVLETGNLQRFEVGKRDPALVAFGRYGFDMSKFSGQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L +P+ ++P Y+ ++   +RS  H  L   ++P  F +++       
Sbjct: 241 DVTLGIRERYLWELFSPSEDDPVYK-QIPGQFRSALHDSLLAPIYPFAFAVLTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    I  S+   FG+            ++P  + + Y  +     + + MI
Sbjct: 300 RTTRQSRNFS-IGSSIVAVFGLRMAGFACSVMAVKSPAAVLVQYAMVLGAIGVGMWMI 356


>gi|85716329|ref|ZP_01047302.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696845|gb|EAQ34730.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 390

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 168/361 (46%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDRYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVIVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
           +       A  G++  + +   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 SDERLSIIADHGTVMKNDKGSFLVLEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P+ N+P  + +L   +R+E H R T  ++P +F  ++       
Sbjct: 241 DVVYGIRERYLWELIVPDQNDPVVQ-QLQGQFRAELHDRFTAPIYPFVFAALTFAFLGTP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    +  +++  FG+      +     ++P    + YL LF    I L +I  
Sbjct: 300 RTTRQSRNFS-MGAAIAAVFGLRMAGFALSVMTVKSPLAALLQYLLLFGAIGISLRVIVA 358

Query: 357 K 357
            
Sbjct: 359 G 359


>gi|148255228|ref|YP_001239813.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407401|gb|ABQ35907.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 389

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 164/358 (45%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFAVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   +++I +      
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVAILVTFIAAF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     IKQ  A+    +  + L+   F +LD +L I+I +  P   LQGI I D RD
Sbjct: 121 FAPDGLRRIKQWDAEITADVLANILQPGRFAQLDQNLTIRIRERQPGGELQGILIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
            +      A+ G++  + D   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 PKERITIIAEKGTVVKNPDGSFLVLEDGNLERFEVGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ L  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYLWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +        L++      GF+  +  + + P    + YL LF +  + + +I
Sbjct: 300 RTTRQSRNFSFGSAILAVFGVRMAGFACSVMTV-KTPVAALVQYLMLFGVLGLSIWII 356


>gi|325292487|ref|YP_004278351.1| permease protein [Agrobacterium sp. H13-3]
 gi|325060340|gb|ADY64031.1| putative permease protein [Agrobacterium sp. H13-3]
          Length = 389

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 211/368 (57%), Gaps = 11/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR   + FL++ L ++ I W IQ+LQRINLV+ + +S+   + ++  ++PT+
Sbjct: 1   MKLLENYILRRTTQMFLVALLPVLAIIWTIQVLQRINLVTDTGQSMGSFMALATMILPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T   T+MN ++EL IID  G+SR  + +PV+ LA +LS   F   N 
Sbjct: 61  IPVVLPFALVIGITQTFTAMNNDSELAIIDAAGSSRSVMFRPVIILAAVLSALSFTITNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           IEP  R++ +Q+ A A   L  S +EE  F  + D LY++I++      L+G+F+ D RD
Sbjct: 121 IEPPARNSARQMVAAAYADLLSSVIEEKTFRAVQDGLYVQIAQR-QGRILKGLFVADRRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANSST 237
                IYYA+ G ID    ++ + DGEV +K+P    +SI+KF SY           +S 
Sbjct: 180 PNFDLIYYAKEGMIDESGTSLTMRDGEVQQKTPD-GKVSIVKFLSYAFDLSTMSEKQTSE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L   D +L FLL+P+ NN +Y+    E++RSE HKRL+ W+F   F LIS+V A    
Sbjct: 239 PSLSPGDASLGFLLSPDENNASYK-RSPESFRSELHKRLSDWMFAFAFALISLVIAADAR 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLM-- 353
              +  ++HP+  +L  +F + W   Y+ ++++Q+  +IP++Y        ++ F+L+  
Sbjct: 298 -SHREARMHPMVAALVTAFMLRWLGFYVTNQVKQSAAFIPLVYAVPGLSGAAAAFILITG 356

Query: 354 IKKKYTKI 361
            K +  KI
Sbjct: 357 RKPRMPKI 364


>gi|220925665|ref|YP_002500967.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
 gi|219950272|gb|ACL60664.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
          Length = 388

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 154/307 (50%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++L+++  ++L I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALSAFLACLAGLTGVIWVTQALRELDLITAKGQTLLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++ + +      
Sbjct: 61  LTIVAPVALFMAVLHALNRLNGDSELIVMSAAGMSPRHLMRPFLTLALIVGLAVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD  +     +  P  TL GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDSGITFHFRERGPGGTLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G ++DLD Q  ++L  G +HR+ P S+D SI+ F  Y +     +   +
Sbjct: 181 AGRSVVYLAERGQAVDLDGQTYLVLEKGSIHRQQPNSRDASIITFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN   Y+  +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNEHYYKL-VKGRFRAELHDRLTAWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|218672884|ref|ZP_03522553.1| putative permease protein [Rhizobium etli GR56]
          Length = 380

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/323 (36%), Positives = 198/323 (61%), Gaps = 5/323 (1%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P+++P+V PF   +  T
Sbjct: 2   MFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSIIPVVLPFALVIAIT 61

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI+EP+ ++  +Q+ A
Sbjct: 62  QTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNIVEPRAKTVARQMIA 121

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +    L  S +EE  F ++D+ LY++ISK      L+G+F+ D RD     IYYA+ G++
Sbjct: 122 ETYADLLSSVIEEKTFRKIDEGLYVQISKRLAGRMLKGLFVADERDPAYELIYYAKEGAV 181

Query: 195 DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKANDQNLSFLLN 252
           D     +I++DGEVHRK+P   ++S++ F SY+      + N     LKA+D++L FL N
Sbjct: 182 DDTGTTLIMHDGEVHRKTPD-GNVSVINFDSYSFDLSDMTENRGQATLKASDRDLWFLFN 240

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
           P+PN+ ++     ++YR+E H+RLT W+ PV+F L S+  A       +  ++HP+  +L
Sbjct: 241 PDPNDKDFTIR-PQSYRAELHRRLTDWILPVVFALFSLAIAGDAR-SHREARLHPMVSAL 298

Query: 313 SISFGVFWGFSYIIHKIEQNPYY 335
           + +F   W   Y  ++I+ +P  
Sbjct: 299 AYAFAFRWAAFYAANQIDTDPGI 321


>gi|75675869|ref|YP_318290.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420739|gb|ABA04938.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 390

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 166/358 (46%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P L+  +++++ +      
Sbjct: 61  VLIISPIALMIAVSHTLHKLATDSEIIVMNAAGLSPFRLFRPFLYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +KQ  A+    +  + L+   F +LD +L I+I +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKQWDAEITADVLANVLQPGRFAQLDPNLTIRIRERQPGGQLAGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
           +       A  G++  + Q   +IL DG + R     ++ +++ F  Y       S    
Sbjct: 181 SNERLSIIADHGTVMKNDQGSFLILEDGHLERFETGKREPAMVAFDRYAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P+  +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPDEKDPLVQ-QLRGQFRAELHDRFTAPIYPFAFAALTFAFLGSP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +    +  +++  FG+      +     ++P    + YL LF    I L +I
Sbjct: 300 RTTRQSRNFS-MGAAIAAVFGLRMAGFALSVMTVKSPMAALLQYLLLFGAIGISLRVI 356


>gi|146340304|ref|YP_001205352.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193110|emb|CAL77121.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 389

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 167/358 (46%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +  + +  + W+ Q L+ I+L++S  +++   L I+G +IP++
Sbjct: 1   MGSIDRYIFRTTLASFALVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITGLVIPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +  ++ L  +  ++E+++++  G S I L  P  +   ++++ + +  + 
Sbjct: 61  LGVIAPIALMIAVSHTLNKLATDSEIIVMNAAGMSPIRLFVPFAYATCVVALLVTLLASY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     IKQ  A+    +  + L+   F +LD +L I+I +  P   L+ I I D RD
Sbjct: 121 IAPDGLRRIKQWDAEITADVLTNILQPGRFAQLDQNLTIRIGERQPGGELKNILIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
            +      A+ G++  + D   ++L DG + R     ++ +++ F  Y       S    
Sbjct: 181 PKERITIIAEKGTVVKNADGSFLVLEDGNLERFEIGKREPAMVAFARYAFDMSKFSNQGR 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L   ++ +  L+ P  ++P Y+ ++   +R E H R    ++P  F  ++       
Sbjct: 241 DVTLGIRERYVWELMAPAEDDPIYK-QIPGQFRQELHDRFLAPIYPFAFAALTFAFLGAP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +        L++      GF+  +  + + P    I Y+ LF + ++ + +I
Sbjct: 300 RTTRQSRNFSFGSAILAVFGVRMAGFACSVMTV-KTPIAALIQYVMLFGVLALSIWII 356


>gi|90423816|ref|YP_532186.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105830|gb|ABD87867.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 388

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 160/360 (44%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTGMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P +F +++++I +      
Sbjct: 61  VLVIAPIALMIAVAHTLNRLANDSEIIVMNAAGLSPLRLVRPFMFASVVVAILVGFISAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I +  ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINRWDSEITADILANILQPGRFSQLETNLTIRVRERQPGGVLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                   A  G++  + D   ++L DG + R     +D +++ F  Y       + +  
Sbjct: 181 PNERISIIADHGTVLKNNDGSFLVLEDGTLQRFESGKRDPALVAFGRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P P++  Y   L   +R+E H R+   ++P +F  ++        
Sbjct: 241 VSYGIRERYLWELLWPEPDDALY-ARLPNQFRAEMHDRVLAPIYPFVFAALTFAFLGLPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    +  +++  F V              P      YL L    +  L +I + 
Sbjct: 300 TTRQSRNFS-MAGAIAAVFVVRLAGFACSIVASSTPAVAIAQYLLLAAALAGSLWVIARN 358


>gi|170746990|ref|YP_001753250.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653512|gb|ACB22567.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 386

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 175/358 (48%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YI R    + L   + +    W+ Q L+ ++LV++  ++L + L ++G  +PT+
Sbjct: 1   MRQIERYIFRIALGATLACLIGLTGTIWLTQALRELDLVTAKGQTLLVFLFVTGLSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T   L  +N ++EL+++   G    +L++P L LA+ +S  +     +
Sbjct: 61  VVVIAPVALFIGTIYALNKLNGDSELIVMSAAGMPPRSLLRPFLTLALFVSFLVGFLVVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F +LD+ +     +  P  TL+G+FI D R+
Sbjct: 121 VMPASFQELRDVITRVRGDFIANVVKEGQFTQLDNGITFHFRERGPGGTLKGLFIQDRRE 180

Query: 181 TQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
               K+Y A+ G ++D+D Q+ +IL +G VH++   S+D SI+ F+ YT+     +   S
Sbjct: 181 AGKTKVYLAERGNAVDVDGQSYLILENGSVHQQQRESRDSSILTFERYTIDLAAFAPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  +++ + LL P+     Y+ +    +R+E H RL+  L+P+    I+  A    
Sbjct: 241 DTIYKPRERSTAQLLFPDTTEGYYKLQK-GRFRAELHDRLSACLYPLALVFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      +++   +  G    +    ++P  +  +Y        +  L+I
Sbjct: 300 RTTRQGRGVAIAGAIVAVV-ALRIGGFAAVSAAARSPAAVLAVYSVPLVAILLSSLLI 356


>gi|170743203|ref|YP_001771858.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
 gi|168197477|gb|ACA19424.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
          Length = 388

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/307 (28%), Positives = 152/307 (49%), Gaps = 5/307 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R    +FL     +  + WV Q L+ ++LV++  +++ I   I+G  IP +
Sbjct: 1   MKQIERYIFRIALGAFLACLAGLTGVIWVTQALRELDLVTAKGQTVLIFFLITGLSIPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    M   + L  +N ++EL+++   G S   L++P L LA+++S  L      
Sbjct: 61  LTVVAPVALFMAVVHALNRLNGDSELIVMSAAGMSPRQLLRPFLTLALIVSAALGFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ L  + +     + ++E  F  LD+ +     +  P   L GIF+ D R+
Sbjct: 121 VLPSSFQELRDLLTRVRGDFIANVVQEGQFTSLDNGITFHFRESAPGGVLLGIFMQDRRE 180

Query: 181 TQTHKIYYAQSG-SIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                 Y A+ G ++DLD Q  ++L  G +HR+   S+D SI+ F  Y +     +   +
Sbjct: 181 AGRSVTYLAERGQALDLDGQTYLVLEKGSIHRQQQNSRDASIISFARYAVDLAAFTPPDT 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++ + LL P+PN   Y+  +   +R+E H RLT WL+P+   LI+  A    
Sbjct: 241 DTVYKPRERSTAQLLFPDPNEHYYKL-VKGRFRAELHDRLTSWLYPLAMALIAFAALGDP 299

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 300 RTTRQGR 306


>gi|118590094|ref|ZP_01547497.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
 gi|118437066|gb|EAV43704.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
          Length = 395

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 173/360 (48%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTIERYIIRRTVYAFTLTIAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL S++ ++EL++ID +G SR  ++KPV+  ++++ +        
Sbjct: 61  IVIVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVMLFSLVVMLLTASMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  ++D L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFITVEDGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A +G I    DR  +++ +G + R+     DISI++F+SY     +    + 
Sbjct: 181 PETAFTYQADTGQIVEAADRTLLVMQNGTIQRRPKQQGDISIVRFQSYAFDLSNLIPEAG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V KA++++   L++P  ++  Y  +  +    E H+R +Q L+ + FGLI      K 
Sbjct: 241 EPVYKASERSTLNLMSPGRHDE-YALKNPDKLVQELHERFSQPLYCLAFGLIVFAFLGKA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    +    S       GF         +   + +LY+     + + L+ I +
Sbjct: 300 RTTRQGRGFAVLGAICSCVLLRTTGFGVTA-ISGTSTVLLSLLYVVPITGAVLALISIFR 358


>gi|188583150|ref|YP_001926595.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346648|gb|ACB82060.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 389

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 160/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFVTLALAVSVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   +
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTLALLFPDTGEGYYRLQK-GRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      L +   +            ++P  +  +Y       ++   +I
Sbjct: 300 RTTRQGRGLAVAGAVLGVV-ALRIAGFAASSAAVRSPGAVAAVYAAPLGAIALSCFII 356


>gi|298291096|ref|YP_003693035.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
 gi|296927607|gb|ADH88416.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
          Length = 385

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 166/362 (45%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R    +FL + L +  + W+ Q L+ ++++++  +++   + I+   +P +
Sbjct: 1   MNRLDRYVFRSAASAFLGTLLVLTLMIWITQALRELDIMTTQGQTILAFVFITSLALPAL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    M     L  MN ++E+++    G S    ++P++ LA++++    +    
Sbjct: 61  ILGLAPAALFMAVAYTLFRMNSDSEIVVSSAAGISTWRFLRPLVILALIVAACCSVLSLE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   ++ +  +     +   F  L D +   + + N N  L GIFI D+RD
Sbjct: 121 LVPAAMRQFRYEISRVRADVVAFIAQPGRFTTLADGMVFHVRERNANGVLGGIFINDARD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
            +    Y A+ G +  + D   +IL +G +HR++P   D ++++F+ Y       ++N  
Sbjct: 181 PKQTNTYLAERGQVVDNKDGTFLILEEGAIHRRTPGKPDSNVVEFQRYAFDLSPFTSNGE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +A +++   LLNP+P +  Y  E    +  E H+RL+  L+ + F  I+  A  + 
Sbjct: 241 NAVYRAPERSFRELLNPDPKDYVYILES-GRFTEELHRRLSLPLYVLAFFGIACAALAEP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ + +     +      +      +I++I  NP  IP +YL          L +  
Sbjct: 300 RTTREGRGLALAATT-PFVIVLQVTSFGLINQIRGNPSVIPFVYLVPAVFIVGSALSLSG 358

Query: 357 KY 358
           ++
Sbjct: 359 RF 360


>gi|92117863|ref|YP_577592.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800757|gb|ABE63132.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 389

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 164/361 (45%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF++  + +  + W+ Q L+ I+L++S  +++   L I+   IP +
Sbjct: 1   MGSIDKYIFRTTLASFVVVLVSLTGVIWITQALRGIDLMTSQGQTILTFLGITSLAIPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    +  ++ L  +  ++E+++++  G S   L +P ++  +++++ +      
Sbjct: 61  VLIISPIALMIAISHTLHKLATDSEIIVMNAAGLSPFRLFRPFIYATVVVALLVAFIAAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K+  A+    +  + L+   F +LD +L I++ +  P   L GIFI D R+
Sbjct: 121 LAPDGMRRLKRWDAEITADVLANVLQPGRFAQLDPNLTIRVRERQPGGLLVGIFIDDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                   A  G++  + +   +IL DG + R     ++ +++ F+         S    
Sbjct: 181 PNERLSIVADHGTVMKNDNGSFLILEDGHLERLEAGKREPNMVAFRRNAFDMSKFSNRGH 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V    ++ L  L+ P P +P  + +L   +R+E H R T  ++P  F  ++       
Sbjct: 241 DVVYGIRERYLWELIAPEPTDPLVQ-QLPGQFRAELHDRFTAPIYPFAFAALTFAFLGTP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    +  ++   FG+      +     ++P    + YL LF    + L +I  
Sbjct: 300 RTTRQSRNFS-MGAAIVTVFGLRMAGFALSVMAVKSPTAPLLQYLLLFAAIGVSLRVIVA 358

Query: 357 K 357
            
Sbjct: 359 G 359


>gi|240140389|ref|YP_002964868.1| putative permease [Methylobacterium extorquens AM1]
 gi|240010365|gb|ACS41591.1| putative permease [Methylobacterium extorquens AM1]
          Length = 389

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 159/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + L+E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVLKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQK-GRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      + +   +            ++P  +  +Y       ++  L+I
Sbjct: 300 RTTRQGRGLAVAGAVVGV-IALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLI 356


>gi|91977434|ref|YP_570093.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683890|gb|ABE40192.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 388

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 160/359 (44%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGAIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P ++  I +++ + +    
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFVYATIAVAVLVTLIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                   A  G++  + D   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNDRVSIIADHGTVVKNSDGSFLVLEDGHLERFQAGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +  L  L+ P+P +P    ++   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIREHYLWELIWPDPKDPLL-AQVPTQFRAEMHDRLLAPIYPFFFAAVTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             RQ +    +  +++ +F V      +       PY   I YL L     + L +I++
Sbjct: 300 TTRQSRNFS-MVGAVACAFVVRLAGFALSVVANHTPYIAGIQYLLLAVAIGVSLWLIRR 357


>gi|163853056|ref|YP_001641099.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218531866|ref|YP_002422682.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254562993|ref|YP_003070088.1| permease [Methylobacterium extorquens DM4]
 gi|163664661|gb|ABY32028.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218524169|gb|ACK84754.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|254270271|emb|CAX26267.1| putative permease [Methylobacterium extorquens DM4]
          Length = 389

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 159/358 (44%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+   +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITALSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P   LA  +S+ +      
Sbjct: 61  ITVIAPVALFIACVYALNKLNGDSELIVMSAAGMPPRQLLRPFATLAFAISVVVAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD+ +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDNGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVSEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     YR +    +R+E H RL+ WL+P+    I+  A    
Sbjct: 241 ETVYKPRERSTMALLFPDTGEGYYRLQK-GRFRAELHDRLSAWLYPLALAFIAFAALGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +      + +   +            ++P  +  +Y       ++  L+I
Sbjct: 300 RTTRQGRGLAVAGAVVGV-IALRIAGFAASSAAVRSPGAVVAIYAAPLGAIALSCLLI 356


>gi|316933708|ref|YP_004108690.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601422|gb|ADU43957.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 388

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 160/360 (44%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + +    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLAVDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVTVIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+RD
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEPGLTIRVRERQPGGILVGVFIDDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNERISIIADHGTVLKNEKGSFLVLEDGHLERFQAGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  ++P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VSYGIRERYLWELLFPPADDPLL-ARLPTEFRSEMHDRLLAPIYPFFFATVAFAFLGLPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    I   L ++F V      +     + PY   + YL L    +I L +IK+ 
Sbjct: 300 TTRQSRNFSMIGAVL-VAFVVRLAGFALSVIANKTPYVAGLQYLLLAVAIAICLWLIKRN 358


>gi|39936124|ref|NP_948400.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|192291842|ref|YP_001992447.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649978|emb|CAE28502.1| possible permease [Rhodopseudomonas palustris CGA009]
 gi|192285591|gb|ACF01972.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 388

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/360 (21%), Positives = 157/360 (43%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDRYIFRTTLVSFAVVMGSLTGVIWITQALRGIDLMTSQGQTIITFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S I L +P  +  ++++  + I    
Sbjct: 61  VLVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPIRLFRPFFYATMVVAALVIIIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  ++    +  + L+   F +L+  L I++ +  P   L G+FI D+R 
Sbjct: 121 IAPDGLRRIARWDSEITADVLANVLQPGRFAQLEQGLTIRVRERQPGGLLVGVFIDDARA 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                   A  G++  + +   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PNERVSIIADHGTVVKNDKGSFLVLEDGHLERFQTGKQEPALVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  LL P  N+P     L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VAYGIRERYLWELLWPAENDPLL-ARLPTEFRSEMHDRLLAPIYPFFFAAVAFAFLGLAR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +        L ++F V      +     + PY   + YL LF  +   L +I + 
Sbjct: 300 TTRQSRNFSMAGAVL-VAFVVRLAGFALSVIANKTPYVAGLQYLLLFVATGTCLWLINRN 358


>gi|254473376|ref|ZP_05086773.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
 gi|211957492|gb|EEA92695.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
          Length = 415

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 177/344 (51%), Gaps = 6/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R    +F+++   +  + W  Q L++++LV+S  ++L     I+   +P +
Sbjct: 19  MKTIERYIIRRSFTAFIVTLAAMTGVVWSTQALRQLDLVTSKGQTLLQFGYITALALPFL 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL SM+R++EL++I+ +G S+  +++P++  ++ ++  ++     
Sbjct: 79  ILIVAPFAMMLAFIIVLNSMSRDSELIVINASGASKWLVLRPIMTFSLCVTALMYFLSIY 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + ++ L  + ++   F  ++++L   I   + +  L+G+ + D+RD
Sbjct: 139 LSPTGLAELRSELTRVRVDLVANIIKPGRFIPIEENLTFHIRNRSGDGVLEGLLLDDARD 198

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +T   Y A++G I    D+  +++ DG + R+    +D+SI+ F+SY     S    + 
Sbjct: 199 PETSFTYTAETGRIIEAADKTLLVMLDGTIQRRPKGGQDMSIVSFESYGFDLSSMIPEAR 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               KA+++    LL+ +P++ +Y  +  +    EFH RL+  L+P+ FGLI        
Sbjct: 259 EPTFKASERPTFDLLSASPDD-SYAAKHWDKLIVEFHDRLSVPLYPIAFGLIIYAFLGSP 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
              RQ + +  I  +++++  +          +   P   P+LY
Sbjct: 318 KTTRQDQGLA-ITTTIAVATLLRTAGFGATLIVSSAPDMFPLLY 360


>gi|326408706|gb|ADZ65771.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
 gi|326538430|gb|ADZ86645.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
          Length = 388

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 104/344 (30%), Positives = 194/344 (56%), Gaps = 6/344 (1%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
            F       V I W +Q+LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T
Sbjct: 1   MFFAVLGAAVGITWTVQVLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAIT 60

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
             L++MN+++EL++I+ +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A
Sbjct: 61  QTLSTMNQDSELVVINASGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIA 120

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
            A   L    ++E  F +L D+LYI+I++   + ++ G+FI DS D     IYYA  G+I
Sbjct: 121 NASADLMHVIIQEGTFRKLADNLYIQIAERRADGSIGGLFIADSCDPTLDLIYYAADGAI 180

Query: 195 DLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSSTIVLKANDQNLSFL 250
                   +++ +GEV R++     +SI+KF SY       ++     V+ A D+ L++L
Sbjct: 181 ASTPSGDMLLMENGEVQRRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYL 240

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           LNP+ N+P  +   L TY++E H+R TQW++P+IF +I++  A       +  ++   F 
Sbjct: 241 LNPDSNDPMLQTRPL-TYKAELHRRFTQWIYPLIFAMIALAIAGDSR-SHREARVSASFS 298

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++S +  V+W   +   + +++P YI ++YL    +  +   ++
Sbjct: 299 AISTALLVYWAGYFASDRADKDPSYILVMYLVPLVVFLVTGFIL 342


>gi|115525294|ref|YP_782205.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519241|gb|ABJ07225.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 388

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 160/359 (44%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++   +P +
Sbjct: 1   MGSTDSYIFRTTLASFAVILASLTGVIWITQALRGIDLMTSQGQTILTFLGLTSMAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L++P ++ A ++++ +      
Sbjct: 61  ILVIAPLALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLMRPFMYAAAVVALLVGFIGAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    I    ++    +  + L+   F +L+ +L I++ +  P   L G+FI D RD
Sbjct: 121 VAPEGLRRINNWDSEITADILANILQPGRFAQLEQNLTIRVRERQPGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
            +      A  G++  + D   ++L DG + R     +D +++ F  Y       + +  
Sbjct: 181 PKERVSIIADHGTVLKNADGSFLVLEDGTLQRFELGKRDPALVAFGRYAFDMSKFSKARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     ++ L  L+ P P +P     L   +R+E H RL   ++P  F  ++        
Sbjct: 241 VTYGIRERYLWELIWPQPGDPLV-ARLPNQFRAEMHDRLMAPIYPFAFAALTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             RQ +         ++      GF+  I     NP++  + YL L    ++ + +  +
Sbjct: 300 TTRQSRNFSVAGAIAAVFLLRLAGFACSIMT-NTNPWFAALQYLLLAGAIALGMWISAR 357


>gi|86749600|ref|YP_486096.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572628|gb|ABD07185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 388

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 158/360 (43%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + YI R    SF +    +  + W+ Q L+ I+L++S  +++   L ++G  +P +
Sbjct: 1   MGSIDSYIFRTTLTSFAVVMASLTGVIWITQALRGIDLMTSQGQTIVTFLGLTGLAVPVL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +   + L  +  ++E+++++  G S + L +P ++  I ++  + +  + 
Sbjct: 61  ILVIAPIALMIAVAHTLNRLATDSEIIVMNAAGLSPLRLFRPFVYATIFVAALVTLIGSY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     I +  A+    +  + L+   F +L+ +L I++ +      L G+FI D RD
Sbjct: 121 IAPDGLRRIARWDAEITADVLANVLQPGRFAQLEQNLTIRVRERQAGGLLVGVFIDDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSST 237
                   A  G++  + D   ++L DG + R     ++ +++ F  Y       + +  
Sbjct: 181 PADRVSIIADHGTVLKNKDGSFLVLEDGHLERFQGGKQEPTLVAFSRYAFDMSKFSRARD 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     +  L  L+ P+P +P    +L   +RSE H RL   ++P  F  ++        
Sbjct: 241 VAYGIREHYLWELIWPDPKDPLL-AQLPTQFRSEMHDRLLAPIYPFFFAAVTFAFLGMPR 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ +    I   L  +F V      +       PY   + YL L    +  + +I++ 
Sbjct: 300 TTRQSRNFSMIGAVL-CAFVVRLAGFALSVVANHTPYIAGLQYLLLAVAIAASVWLIRRN 358


>gi|110634108|ref|YP_674316.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285092|gb|ABG63151.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 416

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 186/363 (51%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR     F  S  +++ I W  Q+L R++LV+SS +S      ++   +P+V
Sbjct: 24  MKVIERYILRRTLAIFAASLAWLLVIVWTTQVLNRLDLVTSSGQSAATFFTVAFLTLPSV 83

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ PF   +     L +MN ++EL++I   G+ R T+I P+L +AI+ SI  F   N 
Sbjct: 84  VPVIMPFVIGIAVAQTLATMNADSELVVISAAGSPRSTIIWPILIIAIIASIAAFAINNT 143

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP  R  ++ + A A   L  + L E  F ++ D ++++IS+  PN  L GIF++DSRD
Sbjct: 144 LEPYSRQKMRTILANANADLITTVLREGSFRKVVDGIFVQISERLPNGELGGIFVIDSRD 203

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y A+ G+         ++L +GEV R    + D+S+++F SY        +   
Sbjct: 204 PNLKLAYRAERGATVKRDGGNILVLLEGEVQR-QVANGDVSVIRFDSYAFDLSQFTNGEG 262

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   D+ LS LL P+PN+  +  +  +++R+E H R ++WL+P++F LI I  A   
Sbjct: 263 VPTLFPKDRYLSELLEPDPNDKFF-AKNPQSFRAELHTRFSEWLYPIVFALIGIAVAGDA 321

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R   ++HP+  +L+I   V W   Y  ++ E  P Y  +LY        +    I  
Sbjct: 322 RSFR-ETRLHPMVTTLTIGLLVRWAGFYASNEAETVPAYTYLLYAAPLGTILLCCWFIAT 380

Query: 357 KYT 359
              
Sbjct: 381 NRV 383


>gi|23008753|ref|ZP_00050063.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 339

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 151/341 (44%), Gaps = 6/341 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    +FL   + +    WV Q L+ ++LV++  ++L + L I+G  +PT+
Sbjct: 1   MTQIERYIFRIALGAFLTCLIGLTGTIWVTQALRELDLVTAKGQTLLVFLFITGLSLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +N ++EL+++   G     L++P + LA+ +S+        
Sbjct: 61  ITVIAPVALFIACVYALNRLNGDSELIVMSAAGMPPRQLLRPFVTLALAISVVTAFLTIQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++ +  + +     + ++E  F  LD  +     +   + +LQG+FI D R+
Sbjct: 121 VMPSSFQELRDVLTRVRGDFVANVVKEGQFTALDSGITFHFRERGADGSLQGLFIQDKRE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
                +Y A+ G +     +  ++L  G +HR+   S+D SI+ ++ Y +     +   S
Sbjct: 181 AGKAVVYLAERGRVTEVDGQTYLVLEKGSIHRQQKDSRDSSIVSYERYAVDLAAFTPPDS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K  +++   LL P+     Y  +    + +E  +RL+ W +P++   I+       
Sbjct: 241 ETVYKPRERSTLALLFPDTREGYYVLQK-GRFWAELDERLSAWFYPLVLAFIAFDRLGDP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
              RQ + +      L +  G+  G         + P  + 
Sbjct: 300 RTTRQGRGMAVAGAVLGVV-GLRIGGFDASSADVRKPGAVG 339


>gi|254501938|ref|ZP_05114089.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
 gi|222438009|gb|EEE44688.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
          Length = 395

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 170/362 (46%), Gaps = 6/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI+R    +F ++   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MNTLERYIIRRTAYAFTLTLAAMTGVVWATQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V PF   +    VL S++ ++EL++ID +G SR  ++KPVL  A ++ + +      
Sbjct: 61  IVTVAPFALMIALILVLNSLSGDSELIVIDASGGSRFLVLKPVLAFATIIMLLVSALSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++    + +  L  + ++   F  +++ L   I   +   TL G+ + D+RD
Sbjct: 121 VAPAGLAQLRTEITRVRADLVANIVKPGRFINVEEGLTFHIRNRSGKGTLDGLLMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
             T   Y A++G+I     R  +++ +G + R+     D+SI++F+SY     +    +S
Sbjct: 181 PDTAFTYQAETGNIVEAAGRTLLVMQNGTIQRRPKQVGDMSIVRFQSYAFDLSNLIPEAS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V K ++++ + LL P P N  +     E  R+E H+R +  L+ + F LI        
Sbjct: 241 EPVFKPSERSTANLLGP-PGNDYFAVTHPERLRAEIHERFSLPLYCLSFALIVFAFLGVA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ + +  +  +++    +      I      +     + Y+       + L+ I +
Sbjct: 300 RTTRQGRGMAIVG-AITCCVLLRTTGFGITAISNDSAVLYAMRYVVPVLGGGLALVSILR 358

Query: 357 KY 358
            +
Sbjct: 359 GH 360


>gi|307946743|ref|ZP_07662078.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
 gi|307770407|gb|EFO29633.1| permease YjgP/YjgQ family protein [Roseibium sp. TrichSKD4]
          Length = 395

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/358 (24%), Positives = 169/358 (47%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI +     F M+   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTLERYIFKRAIGVFFMAMAAMAGVVWSTQALRQLDLVTSKGQTIVQFIGITMLALPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V PF   +    VL +++ ++EL++ID TG SR  ++KPVL     ++         
Sbjct: 61  LVIVAPFALMIALVLVLNALSGDSELIVIDATGGSRFLVLKPVLIFTAAVTALTATLSIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++   + +  L  + ++   F  +D  L   I   + N TL G+ + D RD
Sbjct: 121 VAPLGLGELREEITRVRADLVANIVKPGHFINMDAGLTFHIRNRSGNGTLDGLLLHDVRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
             T   Y + +G I    DR  +++ +G + RK   + +ISI++F+SY     +    +S
Sbjct: 181 KDTAFTYQSDTGHIVEVADRTLLVMQNGTIQRKPKGAGEISIVRFQSYAFDLSNLIPEAS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V KA++++   LLNP PN+  Y  +  +   +E H+R +Q L+ + F L+      K 
Sbjct: 241 EPVYKASERSTMNLLNPPPND-AYALQHPDKLLAELHERFSQPLYCLAFALVVFAFLGKA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + I  +  +++    +      +          + +LY+      ++ +  I
Sbjct: 300 RTTRQGRGIAILG-AITTCILLRTAGFGVTAIASGFTGLLLLLYVVPIAAMAVSVWSI 356


>gi|328544011|ref|YP_004304120.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
 gi|326413755|gb|ADZ70818.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
          Length = 395

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 171/358 (47%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E YI+R  G +F+M+   +  + W  Q L++++LV+S  +++   + I+   +P +
Sbjct: 1   MKTLERYIVRRAGIAFVMTLAAMTGVVWATQALRQLDLVTSKGQTIVQFVGITMLAMPFL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   +    VL +++ ++EL++I+ +G SR  +++PV+  +  + +        
Sbjct: 61  VLVVAPFALMIALILVLNALSSDSELIVINASGGSRFLVLRPVVLFSAAIMLLSATLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+ ++ L  + +    F  ++D L   I     + +L G+ + D RD
Sbjct: 121 VAPLGLAQLRDEIARVRVDLVANIVRPGRFITVEDGLTFHIRNRRGDGSLDGLLLHDRRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            QT   Y A  G I    DR  +++ DG + R+     DISI++F+SY     +    +S
Sbjct: 181 PQTVFTYQADVGRIVEAADRTLLLMQDGTIQRRPKTDGDISIVRFQSYAFDLSALIPETS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T + KA+++    LL     + +Y  +  +  R+E H RL+Q L+P+ FGLI      + 
Sbjct: 241 TPIYKASERPTLALLLGTHQD-DYARQNADRLRAELHDRLSQPLYPLAFGLIVFAFLGQA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ + +  +  +L    G+      +   I          YL       + L  I
Sbjct: 300 RTTRQGRGMA-MLGALVACIGLRTAGFGVSTLISGQASLTLGYYLVPLIGIGVALWTI 356


>gi|209885016|ref|YP_002288873.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873212|gb|ACI93008.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 385

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 166/361 (45%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + S + Y++R    SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +
Sbjct: 2   LGSIDAYVVRSTLLSFLIVLISLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +  T+ L  +  ++E+++++  G S    ++P ++  ++++  +      
Sbjct: 62  ALIIAPLAILLAVTHTLNRLATDSEIIVMNAAGLSPWRFLRPFMYSTVIVACLISFLAVF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+C   +++   +    +  + L+   F RL D L +++ +  P   L G+FI D R+
Sbjct: 122 LAPECLRALRRWHTEIGADVLANVLQPGQFIRL-DKLVLRVQERRPGGVLVGVFIDDQRN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                   AQ+G +    +   ++L+DG + R     KD  I+ FKSY       S    
Sbjct: 181 PAERINITAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T    A ++ +S L++P P +       L  +R+E H RL   L+P +F +++       
Sbjct: 241 TYNYNARERFISELISP-PKDDQVAQRSLGQFRAELHDRLLAGLYPFVFVILAFAFLGPP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    I + + +   V  G           P  I + Y  L  ++++   MI K
Sbjct: 300 RTTRQGRNFA-ISMLILVVLVVRIGGYACSTIAVSQPAAIAVQYAMLLAVAALSGWMIVK 358

Query: 357 K 357
            
Sbjct: 359 G 359


>gi|296532233|ref|ZP_06894980.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
 gi|296267440|gb|EFH13318.1| permease YjgP/YjgQ [Roseomonas cervicalis ATCC 49957]
          Length = 381

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 162/373 (43%), Gaps = 14/373 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +G   L   + +  + W+ Q L+ I LV     SL + ++++G L+P+ 
Sbjct: 1   MTRLDRYLFRQLGIGLLAVTIGLAALVWLTQSLRFIELVLDRGLSLAVFVELTGLLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T      +N + EL+++   G S   L +P L +A L + F    +  
Sbjct: 61  FAVILPITTFVVTLFSYVRLNGDRELVVMRAAGLSDWQLSRPALLIATLATGFCLFLQLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +    + +  +    L+E +F  L DDL +   +   + TL+GI + D R+
Sbjct: 121 LVPVSHAAFRSWQFEIRNEMAAILLQEGVFSSLGDDLTVYARRREADGTLRGILVHDMRE 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESAN 234
             T     AQ G +        +IL +G+  +  P +      +S++ F   ++   S++
Sbjct: 181 PGTPVTIMAQEGRLVSTPAGPRVILLNGQREQLEPATATHPARLSVLSFAENSVDLASSS 240

Query: 235 SST----IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            S         + ++ +  LLNP+P   N     +  +R+E H+RL      +   ++ +
Sbjct: 241 RSPVDVARNRDSRERFVPELLNPDPA-ENLPERDIRKFRAEGHQRLASPFTALSMAMVGL 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISS 348
             A      R+     P  I +++   +      I +   ++  YIP+++L      + +
Sbjct: 300 AVALASGF-RRHGDWRPAAIGVALVVALLALGLAIGNLAARDNRYIPLIWLHTLGPVLGA 358

Query: 349 IFLLMIKKKYTKI 361
            ++L  +  + KI
Sbjct: 359 AWVLSGRPGWPKI 371


>gi|306842048|ref|ZP_07474721.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
 gi|306287889|gb|EFM59309.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
          Length = 371

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/332 (31%), Positives = 192/332 (57%), Gaps = 9/332 (2%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +LQRIN +++S ++   +++ S  LIP+ +P+V PF   +  T  L++MN+++EL++I+ 
Sbjct: 1   MLQRINFLTTSGQTFQTIVQFSSLLIPSAIPLVMPFALIIAITQTLSTMNQDSELVVINA 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G  R  +++P+L LA  +S+  F+  N +EP  R  ++ + A A   L    ++E  F 
Sbjct: 61  SGAPRSAVMRPILILAATVSVTSFLIANYVEPYARINMRAMIANASADLMHVIIQEGTFR 120

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVH 209
           +L D+LYI++++   + ++ G+FI DSRD     IYYA  G+I        +++ +GEV 
Sbjct: 121 KLADNLYIQVAERRADGSIGGLFIADSRDPTLDLIYYAADGAIASTPSGDMLLMENGEVQ 180

Query: 210 RKSPISKDISIMKFKSYTLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
           R++     +SI+KF SY       ++     V+ A D+ L++LLNP+PN+P  +   L T
Sbjct: 181 RRNVSDGTVSIIKFDSYAFDLNQFASAGDDFVIFAKDRPLTYLLNPDPNDPMLQTRPL-T 239

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           YR+E H+R TQW++P+IF +I++  A       +  ++   F ++S +  V+W   +   
Sbjct: 240 YRAELHRRFTQWIYPLIFAMIALAIAGDSR-SHREARVSASFSAISTALLVYWAGYFASD 298

Query: 328 KIEQNPYYIPILYLFL---FCISSIFLLMIKK 356
           + +++  YI ++YL     F ++   LL  ++
Sbjct: 299 RADKDSSYILVMYLVPLVVFLVTGFILLTGRR 330


>gi|300023217|ref|YP_003755828.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525038|gb|ADJ23507.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 398

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 167/362 (46%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  Y+ R    SF +  + +  I W+   L++ N+V+S  +   +L+K++   +P +
Sbjct: 1   MRIFSKYVFRQAAGSFALIMVSLTGIVWIALALRQFNVVTSQGQDTWMLIKMTSLAVPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF F +   + L  +N ++EL++I  +G    T  +P+L LA+L+SIFL    + 
Sbjct: 61  MAVIAPFSFLIAALHTLNRLNTDSELIVISASGAKVWTAARPLLLLALLVSIFLAFVSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P     ++    + +  L    ++   F   +  L   I   + N  L G+ + D+RD
Sbjct: 121 AQPWSMRQLRDYMVQVRSDLLTQVIQPGRFTSPETGLMFHIRDRDANGELLGLVMHDTRD 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANS 235
               + Y A+ G++        +++  G + R++  +    I+ F  Y +     E  + 
Sbjct: 181 KAQSQSYLAEHGTLVKQDGTAYLVMTVGHIIRRTDANGPPQIVAFDKYIVDLDRFEPQDG 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               LK  ++  S L+NP+P + +Y+ +    +RSE H+R    L+P+ F  + I    +
Sbjct: 241 GPGDLKPRERYFSELINPDPESSSYKNQ-PGQFRSELHERFVTPLYPLAFAFLIIAFVGQ 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               R   ++  + ++  I+         I + + +NP  + + Y          L+++K
Sbjct: 300 AQSTR-TSRMQSLVVTFVIAATCRLAGLAITNAMVRNPSMVAVAYGLPIGAIVYSLIVLK 358

Query: 356 KK 357
           + 
Sbjct: 359 RS 360


>gi|163746448|ref|ZP_02153806.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
 gi|161380333|gb|EDQ04744.1| hypothetical protein OIHEL45_13625 [Oceanibulbus indolifex HEL-45]
          Length = 377

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 141/371 (38%), Gaps = 15/371 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL  +   F    L +V + W+ + +   + +    +S  + L+ +   +P +
Sbjct: 1   MARIDRYILSQLLVMFGFFALVLVALFWINRAVVLFDRLIGDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V   M+  +EL ++   G+    L +PV    + + + +    + 
Sbjct: 61  IVTVLPIATFAASVYVTNRMSGESELTVLQAAGSGPWRLARPVFVFGLCVGLMMTALSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +KQ  A+    LT   L E  F    D++       + +  L+ +F+ D R 
Sbjct: 121 LVPMAQGQLKQREAEISRNLTAQLLTEGTFLHPSDEVTFYTRAIDNDGVLRDVFLSDRRK 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                IY A    +  + D   +I+ +G   R       ++  KF+ ++       S+  
Sbjct: 181 ADEGVIYTAAEAYLARNGDNTTLIMLNGMAQRLDTEQNRLATAKFRDFSFDISPLVSTD- 239

Query: 239 VLKANDQNLSFLLNPN--PNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              A DQ++S ++ P+   +      +L         E H RL Q LF ++  +I     
Sbjct: 240 --DATDQSVSSMVTPDLLWDWAGLAAQLDTAPGIIAEELHSRLAQPLFCIVAAMIGFATL 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 R         I+  +   +      ++ +I +     P+ YL     + + L M
Sbjct: 298 ILGGFSR-FGVWREAVIAFGLLIAIDGLRGTLVVQIRETAALWPLAYLPSLIGAVLTLAM 356

Query: 354 I----KKKYTK 360
           +      ++ +
Sbjct: 357 LWQAAHPRWIR 367


>gi|330993929|ref|ZP_08317859.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
 gi|329758875|gb|EGG75389.1| hypothetical protein SXCC_03824 [Gluconacetobacter sp. SXCC-1]
          Length = 388

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 158/357 (44%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y+LR +  + + +   +V + W+ Q L  ++LV     SL + L+++G LIP+ 
Sbjct: 15  LSILDGYMLRQLLLALVATTGALVTLIWLTQSLHFVSLVVGRGLSLRVFLELTGLLIPSF 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    +   +  + EL ++   G S   + +P L  A + ++   +    
Sbjct: 75  VAVILPITTFVVVQFIYQRLGGDRELTVMQAAGLSPALMARPGLMCAAIATLVCLVLNVW 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      +Q   + +  +    +++ +F ++ D++ + I   + + TL GI + D R 
Sbjct: 135 IVPVSYHAFRQYEFQIRNRMAAFLIQDGVFTQVSDNMTVYIRARDKDGTLHGIMVEDDRT 194

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
                   A+ G++    D+  ++L +G        +  ++++ F   T+   S +++ T
Sbjct: 195 PGAEATILAEEGNLVIINDQPRVVLFNGSRQEIDSHTGRLNVLTFTRNTIDLSSPHTAHT 254

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +  AN+ +++ LL+P+ +   Y          E  +RL+       F +I +V A   +
Sbjct: 255 RLPDANELSIAQLLHPDLHQ--YSRRDESKMFIEAWRRLSTPFCAFSFAMIGLVGAMGGS 312

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ   + P+   L++   V      + +   +N   +P+++L       +  +M+
Sbjct: 313 HSRQAGIVRPVLAILAVV-AVQALTLLVQNLASRNLQLMPLMWLCTVGPGIVCAIML 368


>gi|110680306|ref|YP_683313.1| hypothetical protein RD1_3119 [Roseobacter denitrificans OCh 114]
 gi|109456422|gb|ABG32627.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
          Length = 375

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 140/358 (39%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L  +   F    L +V I W+ + +   + + S  +S  + L+ +   +P +
Sbjct: 1   MVRLDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDELISDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V   MN  +EL ++  TG+  + L +PVL   +++ +   +  ++
Sbjct: 61  ITTVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGLIVFLMASMLHHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +     +     T   L E  F    + +     + + +  L+ +F+ D R 
Sbjct: 121 LMPLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQEIDDDGVLRDVFLSDRRS 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +   IY A    +  D +R ++I+ DG   R +  +  ++   F+ ++    +   N  
Sbjct: 181 VEEGVIYTAAHAYLIRDDERTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  L  +      LL P           +      FH R+   LF ++  LI        
Sbjct: 241 SQRLDPDKMTTFQLLTPWDELSRETGRSIGKITQSFHARIADPLFCIVAALIGFSTLMIG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R       + ++  +   +    S +   + ++P   P+LYL  F  + + + M+
Sbjct: 301 GFSRFG-VWREVGVAFVLLVAIDGLRSTLQSPVRRDPELWPLLYLPTFISALLVIAML 357


>gi|260427478|ref|ZP_05781457.1| permease YjgP/YjgQ [Citreicella sp. SE45]
 gi|260421970|gb|EEX15221.1| permease YjgP/YjgQ [Citreicella sp. SE45]
          Length = 379

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 5/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + W+ + +   + + ++  +  I L+ +   +P V
Sbjct: 1   MQRFDRYMLSQLMVVFGFFALVLVMVYWLNRSVGLFDELIANGHTAGIFLEFTLLALPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   M+  +EL ++  TG S   L +PVL    ++   + I  ++
Sbjct: 61  VAIVLPMAAFGAAVYVTNRMSNESELTVLQATGLSPWRLARPVLVFGAIIGAMMAILSHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++  ++   +++   L E  F      +   I    P   L+ +F+ D RD
Sbjct: 121 LVPASIGQLRERESEISGSVSARLLHEGTFLHPTRGVTFYIRDITPEGELRDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 Y AQS  +  D D   + +  G         + +S   F++ T         + 
Sbjct: 181 PDRAIAYTAQSAYVLRDDDGPKLTMRSGLAQTLRAEDQTLSTTDFENLTYDISGLVTQNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +A   +   LL           + +     E H R  Q L  V+  LI   A    
Sbjct: 241 PPRRRARQISTWELLTDTEAVSEEVKDSVGEVLEEAHMRFEQPLLCVVAALIGYAALMTG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       +     + F +    S +   +  N    P++YL       I  +++++
Sbjct: 301 GFSRFGVTKQIVGAIFLLVF-IKIVESMVTTPVHANAALWPLIYLPSIVGLIIAGVLLQR 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|162149095|ref|YP_001603556.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545162|ref|YP_002277391.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787672|emb|CAP57268.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532839|gb|ACI52776.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 398

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 143/354 (40%), Gaps = 6/354 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR +  + L +   +  + W+ Q L  ++LV     SL + + ++  L+P+ + +
Sbjct: 21  LDRYVLRQLLVALLATTGGLSALIWLTQSLHFVSLVVERGLSLRVFIGLTSLLVPSFVAV 80

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +    V   +  + EL ++   G S   + +  L  A +  +   I    I P
Sbjct: 81  ILPITTFIVVQFVYQRLAGDRELTVMRAAGLSPFFIARAGLLCATISVVSCMILNIWIVP 140

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 KQ   + +  +    L+E +F  +   + + +   + + TL GI + D R    
Sbjct: 141 LSFHAFKQYEFQIRNRMAAFMLQEGVFTPVSPTMTVYVRSRDRDGTLHGIVVEDDRQPDN 200

Query: 184 HKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                AQ G+  +  ++  ++L DG        S  ++++ F   T+   S+       +
Sbjct: 201 PSTVLAQRGTMLVVDNQPRVVLYDGSRQEIDRKSGRLNVLTFSRNTIDLTSSRGDQARFR 260

Query: 242 -ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A + +L  LL+P+P      P     +  E  +RLT       F ++ +VA  + A  R
Sbjct: 261 DATEMSLHELLHPDPQE--VAPRDRGKFAVEAWRRLTAPFTAFSFAMVGLVAVLRGAFSR 318

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I P    LS+   +      + +   +N   IP++++          LM+
Sbjct: 319 HGNIIRPAVAILSVV-SLLALSLMVQNLASRNTSLIPLMWVEAILPGIACALML 371


>gi|58038773|ref|YP_190737.1| hypothetical protein GOX0298 [Gluconobacter oxydans 621H]
 gi|58001187|gb|AAW60081.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 390

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 146/355 (41%), Gaps = 6/355 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR +  + L        + W+ Q L  +++V     SL + ++++  ++P+ + 
Sbjct: 15  LLDRYILRQLLIALLALTGGATALIWLTQSLHFVSMVVQHGLSLRVFIQLTSLMLPSFIA 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M  + EL ++   G S + L +P L  A    +  ++    + 
Sbjct: 75  VILPITTFLVVLFTYQRMVGDRELTVMRAAGRSPLELARPGLLCAFFSVVLCYVLTLWLA 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +   + +  +    L++ +F  L +D+ + +     +  L G+ + D RD  
Sbjct: 135 PVSYHAFHRYEFQIRNRMAAFLLQDGVFTSLSNDMTVYVRGRTSDGQLHGVLVEDDRDPD 194

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI-V 239
           +H    A+ G+  +  D+  ++L DG        +  ++++ F   T+   S+       
Sbjct: 195 SHTTILAERGTMVVVNDQPRVVLYDGSREEIDRHTGRLNVLTFGRNTIDLTSSRQHNHED 254

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              ++ +L  L +P+P+  + R            +RLT  L  + F +I +V   + A  
Sbjct: 255 RDPDEMSLRELFHPDPHEVSERDR--GKNIVVGWRRLTSPLTALSFAMIGLVTVLRGAFS 312

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R      P+   L++  G+      + +   ++   +P+++L     + +   M+
Sbjct: 313 RHGNITRPLIAILTVV-GLLAISLMLQNLAGRHLALVPLIWLEAILPAVVCAAML 366


>gi|154246777|ref|YP_001417735.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
 gi|154160862|gb|ABS68078.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
          Length = 405

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 171/386 (44%), Gaps = 29/386 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +FL   + +  + W  Q L++++LV+S  +++   + I+   +PT+
Sbjct: 1   MGRLDRYIFSTAAVAFLGVVVVLAGMIWATQALRQLDLVTSQGQTIIAFVAITSLTMPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T   L  +N ++E++++ + G     L++P++ LA+L+S F  +    
Sbjct: 61  VLVIAPAALFIATAYTLLKLNGDSEIVVMASAGMGPWRLLRPLIILALLVSAFCALLAIK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T ++   K +  +     +   F  L   L   + +  PN  ++GIFI D+RD
Sbjct: 121 VVPASLATFREQVTKVRADVVSFVAQPGRFVNLSQGLVFHVRERAPNGVMRGIFINDARD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISK---------------------D 217
                 Y A  G I        ++L +G + R+   +K                     +
Sbjct: 181 DGV-STYLADRGQIIESDAGIFLVLENGSIQRRGGAAKEAEKDASEANKDAGKDKGKSSN 239

Query: 218 ISIMKFKSYTLQTES--ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
            S+++F+ Y     S   NS    +K  ++ LS+++NP P +  Y       YR E HKR
Sbjct: 240 SSVVEFQRYAFDLSSLAPNSQGQDVKPMERPLSYVMNP-PQDDLYVRFFPGRYREELHKR 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L+  L+P+ F  I+  A       RQ  ++  +   +     V  G   I  +++     
Sbjct: 299 LSAGLYPMAFFAIAAAALASPRTTRQS-QVAALGAIIPAMGLVQIGNFAIAGQLKTQAAA 357

Query: 336 IPILYLFLFCISSIFLLMIKKKYTKI 361
           +P++YL      ++   M+ + + ++
Sbjct: 358 VPLIYLLPIVTVALC-AMVVQGWIRL 382


>gi|258542097|ref|YP_003187530.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633175|dbj|BAH99150.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636232|dbj|BAI02201.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639287|dbj|BAI05249.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642341|dbj|BAI08296.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645396|dbj|BAI11344.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256648451|dbj|BAI14392.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256651504|dbj|BAI17438.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654495|dbj|BAI20422.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 401

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 156/357 (43%), Gaps = 11/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L +  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALARAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 A  GS  I  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 241 K-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           + A + +L  LL+P+P   + R      ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSERD--TGKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-----LFCISSIFL 351
           R      P+   L++  G+      + +   +N   IP++ L      L C   +F+
Sbjct: 331 RYGNIKRPLAAVLTVV-GLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGILFI 386


>gi|163735795|ref|ZP_02143224.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
 gi|161390881|gb|EDQ15221.1| hypothetical protein RLO149_00570 [Roseobacter litoralis Och 149]
          Length = 375

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 140/358 (39%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L  +   F    L +V I W+ + +   + + S  +S  + L+ +   +P +
Sbjct: 1   MVRLDRYMLSQLLVLFGFFALVLVAILWINRGVSLFDQLISDGQSALVFLEFTALGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V   MN  +EL ++  TG+  + L +PVL   +++ +   +  ++
Sbjct: 61  ITTVLPIATFAAAVYVTNRMNNESELTVLQATGSGPVRLARPVLVFGVIVFLMASVLHHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  +     +     T   L E  F    + +     + + +  L+ +F+ D R 
Sbjct: 121 LMPLAQQQLGHRQNEIAQNATSRLLTEGRFLHPSEGVTFYTQQIDDDGVLRDVFLSDRRH 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +   IY A    +  D DR ++I+ DG   R +  +  ++   F+ ++    +   N  
Sbjct: 181 VEEGVIYTAAHAYLIRDEDRTSLIMVDGLAQRLTTATDRLATANFRDFSFDISALVQNDV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  L  +      LL P           + T    FH R+   LF ++  LI        
Sbjct: 241 SQRLDPDRMTTFQLLTPWDQLSRETGRSIGTISQSFHARIADPLFCIVAALIGFSTLMIG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R       +  +  +   +    S +   + ++P   P+LYL  F  + + + M+
Sbjct: 301 GFSRFG-VWREVAFAFVLLVAIDGVRSTLQSPVRRDPELWPLLYLPTFISALLVIAML 357


>gi|254488881|ref|ZP_05102086.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
 gi|214045750|gb|EEB86388.1| permease YjgP/YjgQ family protein [Roseobacter sp. GAI101]
          Length = 376

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 139/368 (37%), Gaps = 9/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSKFDRYMLSQFLTLFSFFALVLVAIFWINRAVILFDRLIGDGQTALVFLEFTVLGLPRL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         V+  M   +EL ++  TGT    L +PV    I +++ + +  ++
Sbjct: 61  ITTVLPIATFAGAAYVINRMTSESELTVLQATGTGPWRLARPVFAYGICVALMMSVLTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++ + Q  A+    +T   L E  F      +         +  L+ +F+ D R+
Sbjct: 121 LVPMTKAELNQREAEISQNVTARLLTEGTFLHPTSKVTFYTRLIGNDGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +  + +   +I+ DG   R     K ++  KF+ ++    +  +NS+
Sbjct: 181 PDEGVIYTAAEAYLVRNGNGTTLIMVDGLAQRLQVEGKQLATAKFRDFSFDISALVSNST 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +      LL    +      +       E + R    LF +I  +I        
Sbjct: 241 DESQSIDSMVTFDLLKNWDDLAAKTGQTHGDIAEEVNARFADPLFCIIAAMIGYATLIMG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI-- 354
              R       I I+  +   +    S ++  + Q+    P+LY+     + + L MI  
Sbjct: 301 GFSR-FGVWREIVIAFGLLIAIDGFSSTLVETVRQDASRWPVLYVPSLVGAMLVLAMIWQ 359

Query: 355 --KKKYTK 360
                +TK
Sbjct: 360 TAHPGWTK 367


>gi|329114150|ref|ZP_08242912.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
 gi|326696226|gb|EGE47905.1| Hypothetical protein APO_0930 [Acetobacter pomorum DM001]
          Length = 401

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 156/357 (43%), Gaps = 11/357 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+   +  + L +   +  + W++Q L+ ++LV     SL + ++++  LIP+ + 
Sbjct: 33  TLDRYVFHQLLVALLATTGGLAALIWLMQSLRFVSLVVDRGLSLRVFIELTSLLIPSFVA 92

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  V   +  + EL ++   G S+  L K  L  A++ +I  F+    I 
Sbjct: 93  VVLPITTFVVSLFVYQRLAGDRELTVMQAAGLSQFALAKAGLGCALMATIMGFLLNLWIV 152

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q     +  +    L+E +F ++ D + + I   + + TL GI + D R   
Sbjct: 153 PTSYHAFRQYEFDIRNKMAAFMLQEGVFTKVSDAMTVYIRSRSHDGTLHGIMVEDDRQPG 212

Query: 183 THKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 A  GS  I  D   +IL DG        +  ++++ FK  ++   SA+      
Sbjct: 213 NQATILANHGSMMIVNDTPRVILYDGSRQVIDHKTGRLNMLVFKQDSMDLSSAHQEDARF 272

Query: 241 K-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           + A + +L  LL+P+P   + R      ++ E  +RLT  L    F ++ +VA  + A  
Sbjct: 273 RDAAEMSLGELLHPDPQQVSVRD--TGKFKVEGWRRLTSPLTCFSFAMVGLVAVLRGAFS 330

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-----LFCISSIFL 351
           R      P+   L++  G+      + +   +N   IP++ L      L C   +F+
Sbjct: 331 RYGNIKRPLAAVLTVV-GLLAINLLLQNLASRNMALIPLIPLVALLPGLICAGILFI 386


>gi|299135068|ref|ZP_07028259.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298590045|gb|EFI50249.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 381

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 163/354 (46%), Gaps = 7/354 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R    SFL+  + +  + WV Q L+ I+L+++  +++ + L I+G  IP +  ++ P 
Sbjct: 1   MVRLTLLSFLIVLVSLTGVIWVTQALRGIDLMTAQGQTVLVFLGITGLAIPVLALIIAPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +  T+ L  ++ ++E+++++  G S    ++P +   ++++  +      + P+C  
Sbjct: 61  AMLLAVTHTLNRLSADSEVIVMNAAGLSPWRFLRPFMVSTVIVACLISFLAIFLAPECLR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +++   +    +  + L+   F RL D L +++ +  P   L G+FI D R+       
Sbjct: 121 ALRRWHTEIGADVLANVLQPGQFIRL-DKLVLRVQERRPGGVLVGVFIDDQRNPAERINI 179

Query: 188 YAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKAN 243
            AQ+G +    +   ++L+DG + R     KD  I+ FKSY       S    T    A 
Sbjct: 180 TAQNGVVQKTDKGSFLVLSDGNLQRFQADKKDPLIVAFKSYAFDMSQFSQAPQTYNYNAR 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           ++ +  L++P P +       L  +R+E H RL   L+P +F +++          RQ +
Sbjct: 240 ERFIGELISP-PKDDAVAQRSLGQFRAELHDRLLAGLYPFVFVILAFAFLGPPRTTRQGR 298

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 + L +      G++     + + P  I + Y  L  ++ + + MI K 
Sbjct: 299 NFAVSALVLLVLVVRIGGYACSTIGVSR-PGAIVVQYAMLMIVAGVSIWMILKG 351


>gi|312113656|ref|YP_004011252.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218785|gb|ADP70153.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 387

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 164/357 (45%), Gaps = 6/357 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R    + +M  + +  I W+  +L+ I L+++  ++  + L+I+   IP+++ 
Sbjct: 2   LISRYIFRQTASALIMILVSLTLIVWLTSLLREIKLLTAQGQTFLLFLQITALAIPSLIV 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +   + L  ++ ++EL+++   G+S   L  P LFLA+++S+ +  +   + 
Sbjct: 62  TVAPVAFLIAALHSLNRLSGDSELIVLSAAGSSVWRLFSPYLFLAVVVSMCVLTANLFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +    ++ +  +    ++   F  L+  L   +     N  L G+ + D RD +
Sbjct: 122 PNAARLLGDTVSQVRADVLSQVIQPGEFSDLEPGLTFHMRAKGDNGELLGVVVRDERDPK 181

Query: 183 THKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSSTI 238
                 A+ G I  D  R +++L+DG++ R+        ++ F SY       SA     
Sbjct: 182 AVTTVIAEQGQILQDGGRASMMLHDGQIIRQQAEKTAAQVVVFTSYAFDIGDFSAKKGPR 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K  ++++  LL P+  +P Y      ++RSE H+R +  L+P+ F +I+++   +   
Sbjct: 242 ERKPRERDIGELLFPDKESPAYT-NTKGSFRSEIHERFSGALYPIAFAIIAVLYLGRPKT 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R   +   +F + ++   +       ++ + +  + + ++Y     +    L+M++
Sbjct: 301 TR-EGRTGNLFTAFTLGAAIRIAGIAGVNIVGKKAWALGLIYGIPVAVIVAGLVMLR 356


>gi|23016381|ref|ZP_00056138.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 372

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 150/360 (41%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R +    +     +  + W+ Q L+ + ++ +   S+   LK++  L+P  
Sbjct: 1   MSGITRYMMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +  + EL+++   G S ++L +P + L + +S   ++    
Sbjct: 61  LVVIIPISLFAVVLFTYNRLIADRELIVLRAAGLSHLSLARPAIILGLAVSAVGYLLSCW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P    +  ++    +  +    L+E +F +  + L I +    PN  L G+ + D R 
Sbjct: 121 IIPHTVRSFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRH 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
            Q      A+ G++    Q   +++ +G     +P +  +S++ F +YT    T + N  
Sbjct: 181 PQRAVTLMAERGALVYTEQGPRVLMINGNRQEVTPGTGKLSLLYFDNYTVDFNTATGNKP 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A +++   LL+ +  +       L  ++SE H RL   L+ + F L++       
Sbjct: 241 DRFRDARERSTLELLSMD--DSMENKGELRRFKSELHSRLASPLYNLGFPLLAAAVLLTS 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ + +  +  + ++   V        +    N  ++P++YL      +  L ++ +
Sbjct: 299 GFDRRGQTVQVMVSA-ALMVAVQALALGASNLSSGNLAFVPLIYLNATLPIAFGLWVLAR 357


>gi|144897578|emb|CAM74442.1| conserved hypothetical protein, membrane [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 373

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 144/358 (40%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y LR +    L     +  + W+ Q L+ I ++ +   S+   LK++G L+P+ 
Sbjct: 1   MTGITRYFLRQLAVGMLFVSAALTCVLWLTQSLRLIEMIVNQGISVTTFLKLTGMLMPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +N + EL+++   G S   L KP L LA + +I  ++    
Sbjct: 61  LVVIIPIALFAVILFTYNKLNTDRELVVLRAAGLSNWALAKPALILAGIATIMGYVLSVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+     +++    +  ++   L+E  F +    + I +        L G+ + D R 
Sbjct: 121 IIPQTVQNFREVQWSIRNDISNLLLQEGTFNKFGKGVTIYVRTRTSEGELLGLLVHDKRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
                   A+ G++        I++ +G   +    +  +S++ F SYT+    +     
Sbjct: 181 PTKPVTLMAEKGALVFTETGPRILMVNGNRQQLPDGTGQLSVLNFDSYTVDLSMSGGDNG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +    A + +++ LLN +              + E H+RLT  L+ + + LI++      
Sbjct: 241 SRFRDARELSMAELLNADEAQMGVTD--YRRAKGELHQRLTSPLYSLGYTLIALATLLTA 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R+ + +  I  ++ +  GV      + +     P ++P LY+       +    +
Sbjct: 299 GFDRRGQTV-TILTAIGLMVGVQAAVLGLANLSASKPIFLPFLYVLAVLPLVLGPWWL 355


>gi|296116656|ref|ZP_06835266.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976868|gb|EFG83636.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 386

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 155/357 (43%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y+LR +  + + +   +  + W+ Q L  ++LV     SL + ++++  LIP+ 
Sbjct: 15  LSILDRYVLRQLLLALVATTGALALLIWLTQSLHFVSLVVGRGLSLRVFVQLTSLLIPSF 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    +   +  + EL ++   G S   + +P L  A++  +  +     
Sbjct: 75  VAVILPITTFVVVQFIYQRLGSDRELTVMQAAGLSPFMMARPALLCALVSVLACYALNLW 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +Q   + +  +    +++ +F ++ D++ + I   +P+  L GI + D R 
Sbjct: 135 VVPTAYHGFRQYEYQIRNKMAAFLIQDGVFTQVSDNMTVYIRARDPSGMLHGIMVEDDRQ 194

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
                   A+ GS  I  D+  I+L +G        +  ++++ F+  T+   + + + T
Sbjct: 195 PDAQATILAEEGSFVITNDQPRIVLFNGSRQEIDRKTGRLNMLSFERNTIDLSAPHGTQT 254

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               AN+  ++ LL+PN     + P   +    E  +RLT  L    F +I +++A    
Sbjct: 255 RQPDANELPITALLHPNLRQ--FSPRDEKKMIIEAWRRLTSPLCAFSFAMIGLLSALGGG 312

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R    + P+  +L++          + +   +N   +P++++       + + M+
Sbjct: 313 FSRHGNIVRPVAATLAVVAVQAL-TLLVQNLASRNLALMPLMWVSAVLPGMVCMAML 368


>gi|83942394|ref|ZP_00954855.1| membrane protein, putative [Sulfitobacter sp. EE-36]
 gi|83846487|gb|EAP84363.1| membrane protein, putative [Sulfitobacter sp. EE-36]
          Length = 376

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 132/368 (35%), Gaps = 9/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +  + D   +I+ DG   R     K +S  KF+ ++    +  ++  
Sbjct: 181 PDEGVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISALVSSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +    + +                    E   R     F +I  +I        
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGEIAEELTARFASAAFCMIAAMIGYATLVLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI-- 354
              R       I I+  +   +      ++  +  +    P+L+L     + I + MI  
Sbjct: 301 GFSRFG-VWREIVIAFGLLIAIDGLRGTLVETVRDDASRWPLLFLPSLIGAVIVIGMIWQ 359

Query: 355 --KKKYTK 360
                +TK
Sbjct: 360 TAHPGWTK 367


>gi|158425949|ref|YP_001527241.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
 gi|158332838|dbj|BAF90323.1| putative permease precursor [Azorhizobium caulinodans ORS 571]
          Length = 387

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 166/361 (45%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI      +F+   L +  + W  Q L++++LV+S  +++   L I+   +PT+
Sbjct: 1   MGRLDRYIFSTSAVAFVGVTLVLTGMIWATQALRQLDLVTSQGQTILAFLAITSLTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T+  L  +N ++E++++   G S   +++ ++ LA+L S+F       
Sbjct: 61  IMVIAPAALFIATSYTLLKLNGDSEIVVMAAAGMSPWRVLRSLMLLAVLASVFCSALSIH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P    + +   ++ +  +     +   F  L   L   +     N  + G+FI D+R+
Sbjct: 121 IVPASLRSFRDQVSRVRADVVSFVAQPGRFVNLAPGLVFHVRDRAKNGVMSGVFINDARE 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISK-DISIMKFKSYTLQTES----A 233
            +    Y A  G I        ++L +G +HR+ P +  + S+++F+ Y     +     
Sbjct: 181 KEV-STYVADRGQIVEADNGIFLVLENGSIHRRVPGAASNGSVVEFQRYAFDLSALTPGG 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           + S   ++ N+++ +++ NP  ++P Y       +R E+HKRL+  L+P+ F  I+  A 
Sbjct: 240 SQSGADIRPNERSFAYISNPPKDDP-YMIVQPGRFREEYHKRLSAGLYPLAFFAIAAAAM 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    R+ + +  +   + I   +      +  ++    + +P +YL       +  L+
Sbjct: 299 ARPRTTRESRGLA-LAAIVPIMTALQIANFAVAGQLRTAAWAVPAIYLIPLLTIIVSALV 357

Query: 354 I 354
           +
Sbjct: 358 L 358


>gi|83953614|ref|ZP_00962335.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841559|gb|EAP80728.1| membrane protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 376

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 134/368 (36%), Gaps = 9/368 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ + +   + +    ++  + L+ +   +P +
Sbjct: 1   MAKFDRYMLSQFLILFSFFALILVAIFWINRAVVLFDRLIGDGQTALVFLEFTVLGLPKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      +  V+  M   +EL ++  TGTS   L +PV    + ++I + +  ++
Sbjct: 61  ITTVLPIATFAGSVYVINRMTSESELTVLQATGTSPWRLARPVFVYGLCVAIMMSVLTHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     + +  A+    +T   L E  F      +       + +  L+ +F+ D R+
Sbjct: 121 LLPLSNGQLSEREAEISQNVTARLLTEGTFLHPTSKVTFYTRVIDADGVLRDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                IY A    +  + D   +I+ DG   R     K +S  KF+ ++    S  ++  
Sbjct: 181 PDESVIYTASEAYLIRNGDGTTLIMVDGMAQRLEMAGKRLSTAKFRDFSFDISSLVSSDK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +    + +                    E  +R +   F +I  +I        
Sbjct: 241 PRTQSIDAMTTAEMFAQWDQLETITKSSAGDIAEELAQRFSSAAFCMIAAMIGYATLVLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI-- 354
              R       I I+  +   +      ++  +  +    P+L+L     + I + MI  
Sbjct: 301 GFSR-FGVWREIVIAFGLLIALDGLRGTLVDTVRDDASRWPLLFLPSLIGAVIVIGMIWQ 359

Query: 355 --KKKYTK 360
                +TK
Sbjct: 360 TAHPGWTK 367


>gi|86138693|ref|ZP_01057266.1| membrane protein, putative [Roseobacter sp. MED193]
 gi|85824753|gb|EAQ44955.1| membrane protein, putative [Roseobacter sp. MED193]
          Length = 387

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 128/358 (35%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V + WV + +   + +    ++  + L+ +   +P +
Sbjct: 1   MSRFDRYVLSQYLLFFSFFALILVAVFWVNRAVVLFDRLIGDGQTAIVFLEFTALALPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P         V   +   +EL ++  TGTS   + +P L   ++ ++ + +  + 
Sbjct: 61  IRMVLPVAVFASAVWVTNRLQSESELTVLRATGTSPWQMARPALAFGVITALMMSVLTHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +     +    +T   L E  F      +   I + + N TL  +F+ D RD
Sbjct: 121 LLPSSISQLALREQEVSRNVTAKLLTEGHFLHPVKGVTFYIRQIDSNGTLNDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y      +  D     +I+ +G   R    ++ +S   F  ++    S    S+
Sbjct: 181 PNQTMTYTGARAFLVRDGENTHLIMVNGMAQRLEHRTQQLSTTNFSDFSYDISSLANQST 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +    + +   LL    N              EFH R  + L  V   LI        
Sbjct: 241 AAIRNIREISSWELLQDRENISLTEGYSRGALAEEFHLRFARALICVAVALIGFSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R         ++  +   V      +   +  NP    ++YL  F   +I +  +
Sbjct: 301 SYSRLG-VWRQALVAFLLLILVEGLRGVVSEPVRSNPDLWLLIYLPAFIGLAIAVGFL 357


>gi|288962055|ref|YP_003452365.1| predicted permease [Azospirillum sp. B510]
 gi|288914335|dbj|BAI75821.1| predicted permease [Azospirillum sp. B510]
          Length = 385

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 137/361 (37%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +  + L S   +    W+ Q L+ I +V S+   + + L +    +PT 
Sbjct: 1   MNRLQRYLFRNLLIATLYSTAGLTLTIWLSQSLRLIEIVVSAGAPMGMFLWLLLLTVPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P             M  ++EL+++   G    +L  P L LA+ +   + +    
Sbjct: 61  LGVVLPLALVGAILFTYNKMTTDSELVVMRAAGVGPFSLSTPALVLAVAVMAIVLVLNVW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     + ++    +   +  +L E +F  + D   + +   + +  L  + I D R 
Sbjct: 121 ITPAAHRELVRMEYAVRSDYSQLFLREGVFNEVGDRFSVFLRDRDSDGNLHKVLIHDGRQ 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                        +    D    ++ DG        +  +S + F+ Y +  +  +  ++
Sbjct: 181 PDKPVTIMGDRALMQTGADGTRFVVYDGNRQELDRKTNRLSQLFFERYAVDLKAVAPQAA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A +++   L++ N   P     +     +E H R +  L  + F L+++ A    
Sbjct: 241 DRWPDARERSTEDLMSGNV--PAQDDRMRRGLIAELHHRFSSPLLALTFALVALSALLSG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ +    + I++ +  G+  G   +     +   ++P++Y          L ++ +
Sbjct: 299 EFNRRGQSSR-VTIAVLLVMGLQAGALGLTSLAGKATVFVPLMYAMPVVALLPALWVMSR 357

Query: 357 K 357
            
Sbjct: 358 G 358


>gi|260576761|ref|ZP_05844746.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
 gi|259021013|gb|EEW24324.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
          Length = 376

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 160/367 (43%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + +    +S  + L+ S   +P+V
Sbjct: 1   MSRFDRYLLSQLLALFGFFSLVLVAVYWINRAVLLFDKLIGDGQSALVFLEFSLLTLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V PF   + T   +  + R++EL+++  TG S + L +PV    ++++  + +  ++
Sbjct: 61  IMLVLPFSAFVATVYGINRLTRDSELVVMQATGFSPLRLARPVAIFGLIVAAMMAVLLHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ R+T+ Q + +    L   +L +  F      + + I + +P   L+ +F+ D+R 
Sbjct: 121 LVPESRATLAQRTLEVSENLAARFLMDGQFMHPAKGITLYIREISPKGELRDVFLADTRS 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +H  Y A    +        +++ DG V   +     +S+ +F  +T    +  +   
Sbjct: 181 PTSHATYTASRALLVKGDSGPKLVMLDGMVQNLNNKEGRMSVTRFADFTYDLATLIAGPK 240

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           VLK  A+  +   LL P+        E  E    + H RL Q +  +   LI   A    
Sbjct: 241 VLKRNASALSTYDLLWPSAEILQETAETPEALWFQAHNRLAQPILGLAAALIGFSALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF--LLMI 354
           A  R       I +++++   V    + ++    + P + P+ Y       ++   LL +
Sbjct: 301 AFSR-FGLWRQIAVAVALMITVQGIATTMLSLGLKQPEFWPLAYAAPLAGLAMAAGLLWL 359

Query: 355 KKKYTKI 361
            ++  ++
Sbjct: 360 AQRPQRL 366


>gi|254477380|ref|ZP_05090766.1| permease YjgP/YjgQ [Ruegeria sp. R11]
 gi|214031623|gb|EEB72458.1| permease YjgP/YjgQ [Ruegeria sp. R11]
          Length = 388

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 130/358 (36%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S  +  + +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFFEFTALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +N  +EL ++  TGTS   + KP L   I+ +I + I  + 
Sbjct: 61  IRMVLPVAAFASSVWVTNRLNSESELTVLRATGTSPWQMAKPALAFGIITAIMMSILTHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T++Q   +    +T   L E  F      +   I + +P+ TL  +F+ D R+
Sbjct: 121 LLPTSIATLEQRETEISRNVTAKLLSEGDFLHPTRGVTFYIGRIDPDGTLNDVFLSDRRN 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y      +  D DR  +++ DG   R    ++ +S   F  ++    S    + 
Sbjct: 181 PDQVVTYTGGKAYLVRDEDRTHLVMVDGMSQRIDMQTRRLSSTIFSDFSYDISSLANKAE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        LL          P        E H R  + L  V   LI   A    
Sbjct: 241 EKTRNIRAIPSLELLQDRARLIAEGPYSAGALAEELHLRFARALVCVAVALIGFSALMVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R         ++  +   V      +   + +N    P++YL      +  L+ +
Sbjct: 301 GFSRFG-VWRQALVAFVLLIFVEGLRGVVSEPVLENADMWPLIYLPTAVGLAAALIFL 357


>gi|197105168|ref|YP_002130545.1| hypothetical protein PHZ_c1705 [Phenylobacterium zucineum HLK1]
 gi|196478588|gb|ACG78116.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 378

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 143/363 (39%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +    +++ L +  +A + Q L  ++L+ +  +S  + LK++   +P +
Sbjct: 1   MRLIDRYLLRQLLGPVILATLALTGVALLSQTLSGLDLIVNQRQSALVFLKVTLLAMPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    +     L  ++   E+++    G SR  +I P + LA  ++    +    
Sbjct: 61  INMVLPIAVFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAIRLACTVAFLALLMNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++   + +  L  + + E  F      L +     +    L+ +FI   RD
Sbjct: 121 VQPAAYREMRRELFQVRTDLASTLVREGEFTEPAPGLTVYAQGVDGAGNLENLFIHQMRD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
             +   Y A+ G +     R  +++ +G     S  +  ++ + F  Y     +  SS  
Sbjct: 181 DGSATTYTAEQGRVGRSQGRPVLVMRNGSNQEFS-STGVLNYLTFDEYIFDLSALTSSDE 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K +D+    L  P+      R   L+   +E H R++  L+ + F  +++ A    
Sbjct: 240 LVHYKPSDRYPHELFFPDLQQDWERRNRLD-LLAEGHARISSPLYNIAFMAMALSAIIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R       I    + +  V      +    E   +     YL     +++    I +
Sbjct: 299 GFSRLG-YGRRIAAMGAAAAIVRILGFQVQAASEDAAWLNVFQYLIPLAATALAFRSIFR 357

Query: 357 KYT 359
           +  
Sbjct: 358 QRV 360


>gi|304392005|ref|ZP_07373947.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
 gi|303296234|gb|EFL90592.1| permease YjgP/YjgQ family protein [Ahrensia sp. R2A130]
          Length = 402

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 158/359 (44%), Gaps = 7/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   E Y+ +        +   +V + WV++ +Q ++++ S  + +   L I+   +P++
Sbjct: 3   LSLLERYVFKKALVMVATALAGLVGVIWVVRAVQEVDVIMSKGQGIMTYLTITTLGVPSL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     ++++N  +E++++  +G SR +L +P L+LA L++I ++     
Sbjct: 63  IAAVAPLALMIGMVRTISALNDESEMVVMHASGASRWSLARPFLWLAGLMAIMIYFLSLY 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + +++     +  L    +++  F +L   L   I+   P   L+G+FI D+RD
Sbjct: 123 GGPHSLTKMRETVNTMRADLISVVVKDGEFQQLGGGLMFHIATRLPGGELKGVFITDTRD 182

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              H  Y A SG+I    +   ++L  G+V R +  + + S + F SY     + +  T 
Sbjct: 183 ENEHLTYLADSGTISKIGEDAYLVLRQGQVQRTTVKTNNSSFIDFDSYAFNLSTFSGGTG 242

Query: 239 VLKANDQ---NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             K+  +     S L +P+P +  ++      +R EFH R T  L+  +  ++ +V    
Sbjct: 243 DGKSRSRGELRTSELFSPDPADEMFK-RAPHRFRVEFHTRFTSGLYAFMVAIVILVCMGN 301

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               RQ   +  I  ++ +   +      + + ++  P     ++            ++
Sbjct: 302 PQSHRQGLTV-LITSTVVLVILLRGAGILVENNLKATPLLWVAVWGIPLLAIGNSFRLL 359


>gi|114328863|ref|YP_746020.1| hypothetical protein GbCGDNIH1_2199 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317037|gb|ABI63097.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 400

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 160/358 (44%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + Y++R +  + +     +V + W+ Q L+ I LV +   S+ + LK++G LIP+ 
Sbjct: 18  LTTLDRYVMRQLLVALVACTCGLVALIWLTQSLRFIELVVNRGLSVFVFLKLTGLLIPSF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +    V   +  + EL ++   G S   + +P L +A+L  +  F+    
Sbjct: 78  VAVIIPITTYVVVQFVYQRLAGDRELTVMRAAGLSSWVMARPALLVALLTMLLSFVLNLW 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S  ++   + +  +    L++ +F  + DD+ + I K + + TL GI I D+R 
Sbjct: 138 IVPAAFSAFREYQWEIRNKMAAFLLQDGVFTPVSDDMIVYIRKRDADGTLHGILIDDARK 197

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
             +H    AQ G ++        ++L  G        +  ++I+ F   T+  E S    
Sbjct: 198 ADSHATIIAQRGRMEQGSNGAPQVVLESGSRQELDRHTGRLNILTFNENTISLEQSGKDE 257

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                AN+ +L+ LL+P+P+    R   +   R E H+RL+  L  + F ++++V+    
Sbjct: 258 QRSRDANEMSLTELLHPDPSQVMARD--IPKLRVEAHRRLSGPLNVLSFAVVALVSVLNG 315

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           A  R    + P   +  +   +      + +   + P  IP++++           ++
Sbjct: 316 AFRRHGGLLRPGVAA-LVVVALLAVGLAVANAAAKLPQLIPLIWIAAVAPGMAGAWIM 372


>gi|126739399|ref|ZP_01755092.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
 gi|126719499|gb|EBA16208.1| hypothetical protein RSK20926_20820 [Roseobacter sp. SK209-2-6]
          Length = 376

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 136/367 (37%), Gaps = 7/367 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + WV + +   + +    +S  + ++ +   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWVNRAVVLFDRLIGDGQSALVFVEFTALTLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +   +EL ++  TGTS   + +P L   ++ ++ +    ++
Sbjct: 61  IRMVLPVAVFASSVWVTNRLQSESELTVLRATGTSPWQMARPALVFGLVAALMMSALTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S ++    +    +T   L E  F      +   I K   + TL+ +F+ D RD
Sbjct: 121 LLPASISQLEIREREVSRNVTARLLTEGNFLHPAKGITFYIRKIESDGTLKDVFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +   Y      +  D  +  +I+ +G   R +  ++ +S   F  ++    +    + 
Sbjct: 181 PNSSVTYTGSEAFLVRDGEKTHLIMVNGMAQRFTKDTRRLSTTNFSDFSYDISALARKSA 240

Query: 239 VLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               N + +  L  L       N           E H R  + L  V   LI   A    
Sbjct: 241 DRSRNIRAIPSLEILTAREQITNTDGYSAGALAEELHLRFARALVCVTVALIGFSALMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF--CISSIFLLMI 354
              R         ++  +   V      +   + ++P   P++YL      I +   L +
Sbjct: 301 TFSR-FGVWRQALLAFLLLILVEGLRGVVSEPVLKDPTLWPLIYLPAVTGLIIAAGFLQL 359

Query: 355 KKKYTKI 361
             + T+I
Sbjct: 360 AARPTRI 366


>gi|126728787|ref|ZP_01744602.1| Predicted permease [Sagittula stellata E-37]
 gi|126710717|gb|EBA09768.1| Predicted permease [Sagittula stellata E-37]
          Length = 376

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 137/358 (38%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F+ Y+L  +   F    L +V + WV + +   + + +   S  I+L+ +   +P V
Sbjct: 1   MQRFDRYVLSQLMVLFGFFALVLVSVYWVNRAVVLFDRLINDGHSARIVLEFTALSLPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   ++ ++EL ++  TG S   L +PVL   I++++ + +  ++
Sbjct: 61  IALVLPMATFAAAVYVTNRLSGDSELTVVKATGFSPWRLARPVLVFGIMVTLMMSVLTHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    ++    +   +++   L E  F      +   I    P  TLQ + + D R+
Sbjct: 121 LVPQSLKQLRMREQELSSSVSARLLREGTFLHPSKGITFYIRDITPEGTLQDVLLSDRRE 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A    +  D +   +++  G     +     +S   F  +T       +++ 
Sbjct: 181 PEREVIYTADRAYLIRDDEGPKMVMLAGLAQTMNTTDMRLSTTNFSDFTYDLTGLITASP 240

Query: 239 --VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K +    + LL           + +     E H R    L  V+  LI   A    
Sbjct: 241 QKRRKLDAIPTTELLLNTDGIAAETGQQIGEVLEEAHMRFQGPLLCVVAALIGYSALMVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R       I  ++ +   V    S +   + +NP   P++Y         F  ++
Sbjct: 301 VFSRFG-VTRQIVFAIFLLVVVKLVESAVTDPVVRNPRLWPLVYA-PSVTGLAFTWIL 356


>gi|304321348|ref|YP_003854991.1| putative permease [Parvularcula bermudensis HTCC2503]
 gi|303300250|gb|ADM09849.1| putative permease [Parvularcula bermudensis HTCC2503]
          Length = 426

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 150/353 (42%), Gaps = 6/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI + +   FL+       + W  Q+LQR++L+     SL   L+++  LIP++
Sbjct: 46  LTLLDRYIFKQVAVPFLLILACTTAVIWFTQMLQRVDLMVEDGGSLLSFLRVTVLLIPSL 105

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF         L     ++EL  +   G SR+ L +PVL L+IL ++        
Sbjct: 106 VGVILPFAVFAAVLYALNLFVTDSELPAMRAAGASRLRLARPVLVLSILAALVSLYINAD 165

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++PK    ++Q     +  +  S + E +F +    + +   +  P     G+FI DS D
Sbjct: 166 LQPKTYRQLRQTVEDVRSDIAQSLIREGVFVQPTAQITVFAQEVRPGGQFIGLFINDSSD 225

Query: 181 TQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
            +  K Y A+ G   +      ++L +G V  +   +  + + ++    +   + +  + 
Sbjct: 226 PRETKTYTAERGLFQMAETGPKLLLIEGTVQYRDRETGRVDVFRYIETAVDLAAFDRGSG 285

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L   ++ +S LLNP+ ++P+    L + YR+  H RL   L+     ++++      
Sbjct: 286 GRSLDETERTVSQLLNPDLSDPSI-ARLADRYRAAGHARLATPLYCPALAVVALCFLLSP 344

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            + R+      + +++  +  +  G   +            + Y+    +  +
Sbjct: 345 PISRRG-YGQQVLMAIGCALLLRTGGFLLQGLAADLGALNGLQYIVPLAVILL 396


>gi|154253775|ref|YP_001414599.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157725|gb|ABS64942.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 388

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 153/361 (42%), Gaps = 9/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +KS   Y+       F+++ + +  I W+ Q L+ ++++ +  ++L    +++   +P+ 
Sbjct: 2   LKSLSRYLFFQTLGPFVVASVVLSGIIWLTQALRMLDVLITQGQTLLTFFELTVLALPST 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P          L  +  ++E++++   G SR  +  P+L +A+  S+ +      
Sbjct: 62  LMIVLPISLFCAVLYSLHKLISDSEIVVMFAAGVSRWVVALPLLAIAMGTSVIILAFSIY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K    + +  +  + + E  F      L + + +   + T  G+ + D R 
Sbjct: 122 IAPAGMRELKSRLVEIRSDVATAMIREGTFSNPATGLTVFVRERAADGTTYGVLVHDGRI 181

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKF-----KSYTLQTESA 233
                 Y A++GS+    +   +++ +G + R S    + S   F      +Y L     
Sbjct: 182 PSAPVTYMAETGSLVRGPNGPLLVMFNGNIQRASRSGTETSAATFLYFDKYTYDLSQYME 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  T+  +  ++    L+NP  ++  Y  +  +   ++ H+RL +  +PV+  LI + A 
Sbjct: 242 DEPTLSYEGRERYFHELVNPASDD-LYGQQNRDKLLADAHERLVEGFYPVMLTLIGLAAL 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 R+      +  + +++  V      + + +  N    P++Y+    +  I L +
Sbjct: 301 LPAPFNRRG-YASRMATAAAMALTVRILGFALSNAVGNNLALAPLMYILPIAVCGICLAV 359

Query: 354 I 354
           I
Sbjct: 360 I 360


>gi|254460553|ref|ZP_05073969.1| permease YjgP/YjgQ family protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206677142|gb|EDZ41629.1| permease YjgP/YjgQ family protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 381

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 133/365 (36%), Gaps = 6/365 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  F+ Y+L  +   F    L +V + W+ + +   + + +  +  ++ L+ +   +P V
Sbjct: 5   LARFDRYVLSQLFVLFGFFSLVLVSVYWINRAVILFDRLIADGQPASVFLEFTALSLPNV 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      +  V   +   +EL+++  TG S   L +PV+    ++  F+ +    
Sbjct: 65  IRMVLPMSAFAASVYVTNRLASESELVVMQATGYSPWRLARPVVMFGFIVGTFMMVLTQY 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++    +   +L+   L E  F      +   I +  P   L+ +F+ D R+
Sbjct: 125 LVPSSLEQLRFRENEITGSLSSQLLREGEFMNPTKGVTFYIREITPEGVLKDVFLSDRRN 184

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 Y +  G +  +     +++  G  H  +  ++ ++  KF  ++    S   N  
Sbjct: 185 EGRTTTYSSVDGFLVNEPTGPKLVMVSGVTHTLNEDTRKLTKTKFTDFSYSISSLIDNPG 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +     N      LL           +       E H R  Q +  V+  LI        
Sbjct: 245 SFYKSLNQYQTLELLLATDVVQKRSGQSTGRILEEAHSRFNQPILCVVAALIGFSTLLLG 304

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIK 355
              R       I   L +   V    S +   I  N    P++Y   +F   ++F ++  
Sbjct: 305 GFSRFGVGRQIIGAILLLVM-VKLVESIVTDPIRANAQLWPLVYAQSVFGFGAVFTMLYL 363

Query: 356 KKYTK 360
               +
Sbjct: 364 AARPR 368


>gi|209964866|ref|YP_002297781.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209958332|gb|ACI98968.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 372

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 140/360 (38%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR +  + +     +    W+ Q L+ + +V     SL I  +++    PT 
Sbjct: 1   MNQIDRYLLRNLAVATVFVTAGLSAAIWLTQSLRLVEMVVEGGASLGIFFRLALLTFPTF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P             +  ++EL+++   G S + L +P L LA ++++  +     
Sbjct: 61  LSLILPVGLLAAVLFTYNRLIMDSELVVMRAAGLSPMALARPALILAAVVALLCYTLTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +  + +L    +  ++   L E  F  +   L + + +      L G+ I D R 
Sbjct: 121 AGPAAQRELVRLRQAVRSDVSAVLLREGTFNDVGTGLTVYVRERGREGALSGLLIHDLRS 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
                   A+ G +    D   +++ +G   +          ++F  YT+  ++      
Sbjct: 181 PGVATTVVAERGRLVEVDDVPHVVVFNGTQIKFHQDDGRTEWLEFARYTVDLQALRKELG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++  +++L  L+N    +     +     R+E H RL   L P+ F  + + A    
Sbjct: 241 PRWIEPRERSLRDLVNLT--DDPLDRQFFGRLRAELHSRLATPLLPLAFTAVGLAALLPG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R+ +       ++  +  +      I + + +NP   P+LY  +   ++  L  + +
Sbjct: 299 EFSRRGQGRRIALAAVG-ALVLQSAVLGISNLVGKNPALTPLLYGAVLLPAAAALWYMVR 357


>gi|260432791|ref|ZP_05786762.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416619|gb|EEX09878.1| permease YjgP/YjgQ [Silicibacter lacuscaerulensis ITI-1157]
          Length = 379

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 133/366 (36%), Gaps = 6/366 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +     V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFERVISGGQSAMVFLEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P             ++R +E+ ++  TG+S   L + V+   ++  + + +   +
Sbjct: 61  IRTVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLSRGVILFGLIAGLMMAVISVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++  A+    +T   L E  F      + + I + + + TL  +F+ D RD
Sbjct: 121 LRPASVEQLERRQAEVAGDVTAQLLNEGEFMHPAPGVTVYIGRIDLDGTLNEVFVSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
                 Y + S  +  D     +++ DG   R       +S  +F+  SY +   +    
Sbjct: 181 RNNPATYSSTSAYLLSDDTGVHLVMVDGVALRLDREGNTLSSTQFQDASYDVSELTRKGD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                      S LL                   E H+R +     V   ++        
Sbjct: 241 IGRRSIEAVPTSELLRDLDAVAASDGYPRGELVEELHQRFSWIAICVAVAMVGYATLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIK 355
           +  R       IF + +I   +     ++   + ++    P+LY   L  I    + ++ 
Sbjct: 301 SFSR-FGLWPQIFAAFTILVLLEGVRGFVSPIVIKDARLWPVLYGPALLGIVISCVFLVI 359

Query: 356 KKYTKI 361
                I
Sbjct: 360 AGRPLI 365


>gi|83312813|ref|YP_423077.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82947654|dbj|BAE52518.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 368

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 148/353 (41%), Gaps = 7/353 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R +    +     +  + W+ Q L+ + ++ +   S+   LK++  L+P  L ++ P 
Sbjct: 1   MMRQMLVGMIFVSAALACVLWLTQSLRFVEMIVNKGLSIGAFLKLTILLMPGFLVVIIPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                       +  + EL+++   G S + L +P + L + +S   ++    I P    
Sbjct: 61  SLFAVVLFTYNRLIADRELVVLRAAGLSHLALARPAVILGLAVSAVGYMLSCWIIPVTVR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           +  ++    +  +    L+E +F +  + L I +    PN  L G+ + D R  Q     
Sbjct: 121 SFHEMQWTIRNDIGNVLLQEGMFNKFGEGLTIYVRSRTPNGELTGLLVHDKRHAQRPVTL 180

Query: 188 YAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSSTIVLKAN 243
            A+ G++    Q   +++ +G     +P +  +S++ F +YT    T +      V  A 
Sbjct: 181 MAERGALVYTEQGPRVLMVNGNRQEVTPGTGKLSLLYFDNYTVDFNTATGAKHDRVRDAR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +++   LL  + +  N     L  ++SE H RLT  L+ + F L++          R+  
Sbjct: 241 ERSTLELLAIDSSMEN--KGELRRFKSELHSRLTSPLYSLGFPLLAAAVLLTSGFDRRG- 297

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +   +  + ++   V        +    N  ++P++Y+      ++ L ++ +
Sbjct: 298 QTAQVITATALMVAVQALALGASNLSSGNLAFVPLIYINAALPIALGLWVLAR 350


>gi|114766153|ref|ZP_01445157.1| Predicted permease [Pelagibaca bermudensis HTCC2601]
 gi|114541613|gb|EAU44655.1| Predicted permease [Roseovarius sp. HTCC2601]
          Length = 371

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 122/356 (34%), Gaps = 7/356 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L +V + WV   +   + + +   S  I L+ S   +P V+ +V P 
Sbjct: 1   MLSQLMVVFGFFALVLVMVYWVNASVSLFDELITDGHSARIFLEFSLLSLPGVIALVLPM 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M+  +E+ ++   G S   L +PVL   +L+++ + +  + + P   +
Sbjct: 61  AAFGAAVYVTNRMSNESEMTVLQAGGLSPWRLGRPVLVFGVLIALMMSVLTHALVPASVA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++   ++   ++    L E  F      +   I +   +  L+ +++ D R+ Q    Y
Sbjct: 121 QLRDRESEISESVAARLLHEGTFLHPARGVTFYIREITDDGELRDVYLSDRRNDQRTVTY 180

Query: 188 YAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKAN 243
            A++  +  D     + +  G           +S   F   T        +  +   +A 
Sbjct: 181 TAETAYVTRDDGGPKLTMRSGLAQEVQTKDLTLSTTNFTDLTYDISGLITSGGSERRRAR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL           + +     E H R    L  V+  LI   A       R   
Sbjct: 241 QIPTLELLTQTEAVAEEVNDSIGEVLEEAHNRFQMPLLCVVAALIGYAALMTGTFSRFGV 300

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIKKK 357
               +     +   V    S I   +   P + P++YL        +  LL    +
Sbjct: 301 TKQIVGAIFLLVL-VKLVESAITEPVRSTPAFWPLVYLPSLVGFALAAVLLWRAAR 355


>gi|254437787|ref|ZP_05051281.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
 gi|198253233|gb|EDY77547.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
          Length = 379

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V I W+ + ++  + + +  +S  + L+++   +P+V
Sbjct: 1   MARFDRYMLSQLLVLFGFFSLILVVIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    +    V   M+ ++EL ++  TG S   L +P+++  ++++  + +  +I
Sbjct: 61  IRIVLPLSAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPIIYFGLIVAALMSVLTHI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    ++    +T   L    F    DD+   I +  P+  +  IFI +S D
Sbjct: 121 LVPLSTEQLTSRQSEISQTMTARLLTPGEFLTPSDDVTFYIRELTPSGEMLDIFISESTD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y A    +    +   +++ DG        +  +    F  +     +  +   
Sbjct: 181 PTRRTTYTAARAYLVRTENGPQLVMIDGLTQTLDHETNRLLTTGFADFVYDVGALMNDEF 240

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           V +   N  +   LL P+        +     +   H R+ Q     + GL+   A    
Sbjct: 241 VRRVSVNGLSTLALLRPSAAAIAATNKTGYELKLRGHDRIAQAALGFVAGLVGFSALVVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       I  ++ +   +    S        NP   P +YL       I  +++ 
Sbjct: 301 GFSR-FGLWRNILFAVGLVILLKILESTGTSIARANPALWPFVYLAGIGGVVISAILLH 358


>gi|315500012|ref|YP_004088815.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
 gi|315418024|gb|ADU14664.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
          Length = 384

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 144/362 (39%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++ E YI R +    L +   +  IA + Q L + +++    +SL+  LKI+   +P +
Sbjct: 1   MRTIEGYISRQMRTPILGAIAALTAIAILSQSLTQFDVIVERGQSLSTFLKITFLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    + T   L  M+ + E++     G S   +  PV+   + +++   +    
Sbjct: 61  SGLIFPVAIFVGTLVALNRMHNDHEIVAGYANGMSLWRIASPVVRFGVYITLMGLLMTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P     +++   K +  +  + + E  F      + I + + + +  L+ IFI     
Sbjct: 121 IQPAASRAMREELFKIKTDVIAAAVREGDFSTTPSGMTIYVQRIDQSGLLRQIFIRTPGP 180

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               + Y A+ G +       Q +IL DG   + SP    ++ + F  Y+        S 
Sbjct: 181 HGLDRTYLAREGRVITPVKGGQVLILRDGSTQQLSPE-GVLNHLTFAEYSFDISQYVISE 239

Query: 238 --IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +  K +D+    L  PN           +   +E H R++  L+ + F L++IV    
Sbjct: 240 DYLHFKDSDRFPHELFFPNRAMEWENGNWTKLM-AEGHARISGPLYNLGFCLLAIVGVLG 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            A  RQ        +S  I+ G+      I       P    + Y+    +  + L +I 
Sbjct: 299 GAFSRQGYGRRIATVSF-IAAGLRIVGFAIEAGCANTPVLNIMQYVVPVALIWVCLSIIH 357

Query: 356 KK 357
           K 
Sbjct: 358 KN 359


>gi|163792838|ref|ZP_02186814.1| Predicted permease [alpha proteobacterium BAL199]
 gi|159181484|gb|EDP65996.1| Predicted permease [alpha proteobacterium BAL199]
          Length = 369

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 143/362 (39%), Gaps = 7/362 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   I  + +   + +  + W+ Q L+ ++L+ +    +   + ++  L+PT L 
Sbjct: 2   RITRYLAGQILTAMVFIVVSMTCVIWLSQSLRFVDLIVNRGLPIPSFVYLTLMLMPTWLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P      T  V   +  + EL+++   G S + L  P + +A+   +  ++    + 
Sbjct: 62  IVLPIAAFAATVFVYNKLTNDRELVVLSAAGLSPLRLAGPAMVVAVATMLATYLMTLYLV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K+L  + +       L E  F  + D L + +        L GI + D  + +
Sbjct: 122 PMSYRGFKELQFQIRHNFDHLVLREGEFRSIGDGLTVYVRAREDTGQLAGIVVHDQSNAK 181

Query: 183 THKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                 A+ G++    +   +++ +G    +   +  +S++ F  YT+   +        
Sbjct: 182 KTVTLVAERGALITAPEGPRVVMANGSRQERDVETGRVSVLYFDRYTIDLGAMREEVQRT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +   N+  +  LL+P        P+  + Y +E H+RLT  L  +    I +        
Sbjct: 242 IRDQNELFIDDLLHPTEQ--ITDPKNFDEYIAEGHQRLTSPLLALSLTAIGVAVLLSGEF 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R+ + I  I  ++ ++           + + + P  +PI++  +     + L  + ++ 
Sbjct: 300 SRRGQTIR-IITAVLLAGCAEAMGLGSKYLVVRYPSMVPIMWFAVIVPFLLALASMTQRR 358

Query: 359 TK 360
            K
Sbjct: 359 LK 360


>gi|254294286|ref|YP_003060309.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042817|gb|ACT59612.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 385

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 154/357 (43%), Gaps = 7/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+   + R+ +     +V IA + Q L +I+L+  + +S    L +S    P V
Sbjct: 1   MDRFQQYLFGNVLRTMVSIVGGLVLIALLTQGLTQIDLIVENRQSAFTFLYVSMLAAPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L   +R++E+++    G SR+ +  PVL +A + ++        
Sbjct: 61  IGLLLPIALFVAAIATLNRAHRDSEIVVAQAAGMSRLQIASPVLRIAAIAALLHLCINLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++    A+  L  + ++   F     +L + I K      L+ + I D+RD
Sbjct: 121 VQPASYREMRETLTSARTDLAATLVKPGEFNSPAHNLTVYIGKSLGGGELRTLLISDARD 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
              +  Y A++G++       AI++ +  V +    +  +    F  Y  +  +   + +
Sbjct: 181 PDANTTYIARTGAVTEVEGVPAILMRNARVQKID-GNGQLWDGTFDQYIYELAAFVDSDT 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + VLKA+D+ L  LL P+ NN  Y  +  E + +E H RL   L  +   ++++VA    
Sbjct: 240 SYVLKASDRFLHELLYPDFNN-FYDRDNAEKFYAEGHSRLALPLMNMFMAMLAVVAVLGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R+  +   I ++  I           +   E NP    I YL      +I   M
Sbjct: 299 DFSRRGYQTR-ISVATGIGLFAQLLALASVSVGEDNPKLNFIQYLIPILSFTILAFM 354


>gi|84500989|ref|ZP_00999224.1| Predicted permease [Oceanicola batsensis HTCC2597]
 gi|84391056|gb|EAQ03474.1| Predicted permease [Oceanicola batsensis HTCC2597]
          Length = 385

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 135/371 (36%), Gaps = 11/371 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L      F    L +V I W+ Q ++  + +    ++  + L+ +   +P V
Sbjct: 1   MARFDRYLLSQFMVLFGFFSLVLVSIYWINQAVRLFDALIGDGQTAWVFLEFTALTLPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P         V   ++  +EL+++ +TG S   L +PVL+  +++ + + +  + 
Sbjct: 61  IRIVLPMATFAAVVYVTNRLSSESELVVMQSTGFSPWRLARPVLWFGVIVGLIMSVMSHF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +++     +  LT   L E  F      +   I + + + TL+ +F  D RD
Sbjct: 121 LVPVSISRLQERQDDLRQDLTARLLTEGSFLHPVAGITFYIRQIDADGTLRDVFFSDRRD 180

Query: 181 TQTHKIYYAQSGSI------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-- 232
            ++ + + A    +      D     +++ DG         + +    F+ +T       
Sbjct: 181 ARSPQTFTAARAYLIEGGGDDEGGAKLVMLDGLAQTLRAEDQRLFTTYFEDFTYDIGRLF 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +     +         L                    E H R  Q L  +   LI    
Sbjct: 241 GDRGLPHVHIRHLPTLRLFAHPEQVATLTGSSPGQIAEEAHGRFAQALLCLAAALIGFST 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--F 350
                  R       I +++ +   V          + ++P   P++Y+       I   
Sbjct: 301 LLTGGFSRFG-VWQQIVVAIVLVMIVKSIEGVASDPVRRDPSLWPLIYVAPLSGIGIGCV 359

Query: 351 LLMIKKKYTKI 361
           +L I  + +++
Sbjct: 360 MLWIASRGSRL 370


>gi|163759136|ref|ZP_02166222.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
 gi|162283540|gb|EDQ33825.1| hypothetical protein HPDFL43_05210 [Hoeflea phototrophica DFL-43]
          Length = 385

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/362 (24%), Positives = 177/362 (48%), Gaps = 14/362 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           +      S      +    Q+L R+++++++ ++    + ++  +IP+V+ +V PF   +
Sbjct: 1   MASLTFWSLTAATLLVMTTQVLIRVDVLTTTGQAFGAFMLLAATIIPSVISVVAPFALLI 60

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
             + VL+ MN ++EL++I+  G    T+++PV+ L++ LSI + +  N +EP     +  
Sbjct: 61  GVSQVLSGMNSDSELVVIEAAGARPATVLRPVMALSVALSIMVLLVANFVEPWSNRKLYD 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQS 191
           + A+AQ  L    +    F +L+D LY+++++  P   L GIF+ D+R   T  IYYA+S
Sbjct: 121 VLAQAQSDLFSVAVRSGTFMKLEDGLYVQVNEKLPGGALSGIFLSDTRTDGTEAIYYAKS 180

Query: 192 GSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQNL 247
           G I  + D   ++L DGE+ ++   +  ISI+ F SY L   +          +  +Q+ 
Sbjct: 181 GVIQPEGDTNILLLLDGELQQRDTSNDQISIVTFSSYALDMAAFVPAGQNAARRPKEQST 240

Query: 248 SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHP 307
            +LL P P++  Y        + E  +R + WL+P+ FGLI+     K    R  +  + 
Sbjct: 241 GYLLAP-PSDDYYAGNAPYIIKEELVQRFSTWLYPLAFGLIAFAFLGKARSNRHEQFQNG 299

Query: 308 IFISLSISFGVFWGFSYIIHKIEQNPYY------IPILYLFLFCISSIF--LLMIKKKYT 359
             ++  I+ G      Y + +   +         +P + + LF   ++    L I K + 
Sbjct: 300 ALVA-GIALGARGFGFYSVEEAGASSAMEVLSYLVPGMLIVLFGALAVTGHTLTIPKAWA 358

Query: 360 KI 361
           ++
Sbjct: 359 RL 360


>gi|315122195|ref|YP_004062684.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495597|gb|ADR52196.1| permease protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 283

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 187/283 (66%), Positives = 224/283 (79%), Gaps = 1/283 (0%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           MNRN EL IIDNTGTSRITLIKPVLF AILLSIFLFI EN +EPK R+ IK+L A+A L 
Sbjct: 1   MNRNAELFIIDNTGTSRITLIKPVLFFAILLSIFLFILENTLEPKYRTEIKRLGAQAYLN 60

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ 199
           LT S LEENLFF L+++ YIK+SK NPNNT+QGIF +DS D   H+IYYA+SG +DL+++
Sbjct: 61  LTLSSLEENLFFNLNNNFYIKVSKRNPNNTMQGIFAIDSSDPIIHRIYYAKSGFVDLEKK 120

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSSTIVLKANDQNLSFLLNPNPNNP 258
            IIL  GEVHRKS +SKDISIMKF SY L  +S      I LKA+DQNLSFLLNP+PNNP
Sbjct: 121 IIILQKGEVHRKSSVSKDISIMKFDSYALDMQSLLAKQDITLKAHDQNLSFLLNPDPNNP 180

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
           +YR   +  YRSE HKRLTQWLFP++FGLISI++ +K + +R  +K+HP  I+L +SF V
Sbjct: 181 SYRENFIGKYRSELHKRLTQWLFPIVFGLISILSIEKTSSLRHYRKVHPSLIALLLSFCV 240

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           F GFSYII  IEQ+P YIPILYLF F +SSI +L+IKKKY KI
Sbjct: 241 FSGFSYIIQGIEQSPSYIPILYLFFFVLSSILVLLIKKKYVKI 283


>gi|254465542|ref|ZP_05078953.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
 gi|206686450|gb|EDZ46932.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
          Length = 364

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 128/357 (35%), Gaps = 6/357 (1%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +      F    L +V + WV + +   + +  + +S  + L+ +   +P ++ MV P  
Sbjct: 1   MSQYLLFFGFFALILVAVFWVNRAVVLFDTLIGNGQSALVFLEFTALTLPNLIRMVLPIA 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
                  V   +N  +EL ++  TGTS   + +P L   I+ ++ +    + + P   + 
Sbjct: 61  AFGAAVWVTNRLNSESELTVLRATGTSPWQMARPALAFGIITALMMSALTHYLLPASINQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
           +++  ++    +T   L E  F    + +   I + +P+ TL  +F+ D RD      Y 
Sbjct: 121 LEERESEVSRNITAKLLSEGDFLHPAEGVTFYIRQIDPDGTLNDVFLSDRRDPAVTVTYT 180

Query: 189 AQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIVLKAND 244
                +  D  +  +I+ +G   R    ++ +S   F  ++      +  +         
Sbjct: 181 GTRAFLVRDEGSAHLIMVEGMAQRLDNETQRMSTTFFSDFSYDISALARKAENPARNIRA 240

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                L+                   E H R  + L  V   LI   A       R    
Sbjct: 241 IPSLELMTSTEAVTRTDGYSAGAQAEELHLRFARALVCVAVALIGFSALMLGTFSR-FGV 299

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKKYTK 360
               F++  +   V      +   +  NP   P++YL  L  ++   + +I     K
Sbjct: 300 WRQAFLAFVVLIFVEGLRGVVSEPVLDNPGLWPLIYLPTLLGLAVSLIFLILASRPK 356


>gi|114704779|ref|ZP_01437687.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
 gi|114539564|gb|EAU42684.1| hypothetical protein FP2506_07581 [Fulvimarina pelagi HTCC2506]
          Length = 398

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R    S + S + +  I W++Q L RI++V +S  +   +L I+  L+P +
Sbjct: 1   MTLLERYIFRRALISSVGSLVSLALIVWIVQALSRIDIVKTSASAAGNILWIALMLLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V PF   +    VL  +N ++E  +I  +G S   +++P+++L +   I +    + 
Sbjct: 61  AAGVVPFAILIGAIQVLNGLNADSERAVIAASGASMRVILRPIIYLGLAGGILVLTVAHG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P   S          +     +L    F R+  DL I + + N  + ++ +FI D+RD
Sbjct: 121 IGPLASSAFYNGIRSINVDTITLFLRPGRFERVSPDLVISVGESN-GSIIESLFIQDTRD 179

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
                 Y+A   SI    D+  ++L DG++HRK      +S+++F++Y     +   +  
Sbjct: 180 PNLDLTYFAAEASILDQGDQSVLMLFDGQLHRKPKTGNSVSVIEFQTYAFDLSNLRPADD 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               + ++ +   L+ P+P++  Y+ +    Y  E   R T WL+ V F L +IV A + 
Sbjct: 240 GDWTRTSELSTLTLIAPDPDDEIYQKK-PGRYVEEATDRFTSWLYCVAFALWAIVCAGQP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ      + + L+ +  +       +  +  NP     +YL          L+I +
Sbjct: 299 QTNRQASN-AAMTLGLAGAVALKAVAFLALSMVSPNPSMAIFVYLLPIAACVFNALLIMR 357

Query: 357 K 357
            
Sbjct: 358 G 358


>gi|119383653|ref|YP_914709.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
 gi|119373420|gb|ABL69013.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
          Length = 382

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 141/369 (38%), Gaps = 9/369 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL      F    L +V + W+ + +     + S  ++  ++L+ +   +P V
Sbjct: 1   MPRIDRYILSQFMTLFGFFALVLVSVYWINRAVSLFEQLISDGQTALVVLEFTALTLPLV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      +      ++  +EL+ +  TG S   + +PVL   +L+++ + +  + 
Sbjct: 61  ISVVLPIAAFAASAYGTNRLSSESELVAMQATGMSPWRMARPVLVFGVLVALMVALLVHA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R  +    A+    +T  +L    F      + + I     +  L   F+ D+R+
Sbjct: 121 VVPMARGRLADRQAEIAQNVTAQFLRAGAFQYPVRGVTLYIRDIAADGRLVDFFLEDARN 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVH--RKSPISKDISIMKFKS--YTLQTESAN 234
             +   Y +    +    +   +++  G V   R +   + +S+ +F    Y L T    
Sbjct: 181 PDSQTTYTSTEALLVRTDEGPRLVMMQGMVQNLRHAGNRQSLSVTRFSELAYDLGTLIDT 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +        +   LL+P+P          +   +E H+RL +     +  L+      
Sbjct: 241 GESRKRDLRAYSTLRLLDPDPELLAATGATRDRALAEAHERLAKPFQAPVAALLGFGMLL 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLL 352
                R       +  ++     V +  +   +++  N    P++Y+     ++I   +L
Sbjct: 301 LGGFSR-FGVWRQVVWAVVALIVVQFLSTAAENQVAGNASRWPLIYVSPLVGAAICCAVL 359

Query: 353 MIKKKYTKI 361
            +  +  ++
Sbjct: 360 WLAARPRRL 368


>gi|163743163|ref|ZP_02150545.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
 gi|161383580|gb|EDQ07967.1| hypothetical protein RG210_14720 [Phaeobacter gallaeciensis 2.10]
          Length = 376

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 129/351 (36%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P 
Sbjct: 1   MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                +  V   +N  +EL ++  TGTS   + KP L   ++ ++ + I  +++ P   +
Sbjct: 61  AAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPALVFGLITAVMMSILTHVLLPASIA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           T++Q  ++    +T   L E  F      +   I + +P+ TL  +F+ D R+      Y
Sbjct: 121 TLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTY 180

Query: 188 YAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAN 243
                 +  D  R  +++ DG   R +  ++ +S   F  ++    S    +        
Sbjct: 181 TGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISSLANKAEEKTRNIR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL          P        E H R  + L  V   LI   A       R   
Sbjct: 241 AIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 ++  +   V      +   + QN    P++Y+       + L+ +
Sbjct: 300 VWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLIYIPTLIGLLVGLVFL 350


>gi|163739704|ref|ZP_02147112.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
 gi|161386934|gb|EDQ11295.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
          Length = 376

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 129/351 (36%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V + W+ + +   + +    +S  + L+ +   +P ++ MV P 
Sbjct: 1   MLSQYLLFFGFFALILVAVFWINRAVVLFDRLIGDGQSALVFLEFTALALPNLVRMVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                +  V   +N  +EL ++  TGTS   + KP +   ++ ++ + I  +++ P   +
Sbjct: 61  AAFAASVWVTNRLNSESELTVLRATGTSPWQMAKPAMVFGLITAVMMSILTHVLLPASIA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           T++Q  ++    +T   L E  F      +   I + +P+ TL  +F+ D R+      Y
Sbjct: 121 TLEQRESEVARNVTAKLLSEGDFLHPARGVTFYIGRIDPDGTLNDVFLSDRRNAAESVTY 180

Query: 188 YAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSSTIVLKAN 243
                 +  D  R  +++ DG   R +  ++ +S   F  ++    S    +        
Sbjct: 181 TGGKAYLVRDGERTHLVMVDGMSQRINTETQRLSSTIFSDFSYDISSLANKAEEKTRNIR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 LL          P        E H R  + L  V   LI   A       R   
Sbjct: 241 AIPSLELLGDRAKLVADGPYSAGALAEELHLRFARALVCVAVVLIGFAALMLGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 ++  +   V      +   + QN    P++Y+       + L+ +
Sbjct: 300 VWRQALLAFVLLIFVEGLRGVVSEPVLQNAELWPLIYIPTLIGLLVGLVFL 350


>gi|99080790|ref|YP_612944.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
 gi|99037070|gb|ABF63682.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
          Length = 379

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 127/359 (35%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMVFGLLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F    + +   I    P+ TLQ +F+ D RD
Sbjct: 121 LLPASLAQMQFREAELSRSVSAKLLNAGSFLHPSEGITFFIGSIEPDGTLQNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
                 Y +    +    D   +IL DG   RK   +  +S   F   SY L   S   +
Sbjct: 181 PSVEITYTSDRAYLVREDDEAHLILVDGLAQRKEAHNDRLSTTAFSDFSYPLGDLSPARA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL    +              E H R  +        +I +      
Sbjct: 241 AGARPLRNIPTLDLLRERASITEEEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLMG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       +  +  +   +      +   + +N    P++YL       I +L + 
Sbjct: 301 GFSRFG-IWKQVLGAFVLLILIEGMRGVVADPVRENAAMWPLIYLPATLGVMISVLFLH 358


>gi|114569777|ref|YP_756457.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
 gi|114340239|gb|ABI65519.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
          Length = 373

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 138/367 (37%), Gaps = 10/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y    +   F+ +      +A + Q L  ++LVS  +E+    +K++   +P +
Sbjct: 1   MILVQRYFFNQLLWPFMTAIAAFAGLALLTQSLSNVDLVSGYSETALTFIKVTALALPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +   + L  +  ++EL+I    G SR  L+ P++ L + + I       +
Sbjct: 61  TALLVPIALFVAVLSSLNRLTGDSELVIASAAGVSRFGLLSPIMRLGVYVLIANLAVNLL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     +++     +  +  S +    F +L   + I   +   +  +Q I I DSR 
Sbjct: 121 LQPVAYREMRRSLHTLRSDVAASLVTPGAFSQLGQGVTIYARERGRDGRMQDILIHDSRG 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
           T     Y A+ G +    DR A++L DG + +    + ++    F  Y          + 
Sbjct: 181 TDGASTYSAREGVVVRSGDRSAMVLIDGNLQQID-SAGELYYANFDRYEFDLGEFVGPAD 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K +D+ L  LL P+      R    E   +E H RL+  L+ + F LI+       
Sbjct: 240 AMFFKESDRYLHELLWPSAA-EVARTGGPERAWAEAHYRLSAPLYNLAFALIAAACFLAG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLM 353
              R       + I++     +      +      +       YL        +   +  
Sbjct: 299 DHSRMG-YGRRVMIAVGAGLTLRLVGFAMQSASADDAAMNVAQYLVPVFGMVGAVAVIYW 357

Query: 354 IKKKYTK 360
             +   +
Sbjct: 358 PARNRPR 364


>gi|254510429|ref|ZP_05122496.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
 gi|221534140|gb|EEE37128.1| permease YjgP/YjgQ [Rhodobacteraceae bacterium KLH11]
          Length = 379

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 132/358 (36%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +   F    L +V + W+ + +   + V S  +S  + L+ +   +PT+
Sbjct: 1   MSRFDGYFLRQLLVLFGFFTLVLVGVFWITRSVSLFDRVISGGQSAFVFLEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P             ++R +E+ ++  TG+S   L + VL   +   + + +    
Sbjct: 61  IRTVMPMAVFAAAVYATNRLSRESEMTVMLATGSSPWRLARAVLMFGLSAGLMMAVISVF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++Q  A+    +T   L E  F    D + + IS+ + + TL  +F+ D RD
Sbjct: 121 LRPASVERLEQRQAEVAGDVTAQLLNEGEFLHPADGVTVYISRIDLDGTLHEVFVSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSS 236
           T     Y + +  +        +++ DG   R       +S   F+   Y +   + N+ 
Sbjct: 181 TVNPVSYSSTTAYLVNQASGIHLVMLDGVALRFDQQGNTLSSTLFEDAAYDVSELTNNTG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T            L+             L     E H+R +     +   L+        
Sbjct: 241 TDNRSREAIPTIELIRDRDTVAETDDHSLGQLVDELHQRFSWIAICIAVALVGYSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +  R       I  + +I   +     ++   + ++P    +LYL       +  L +
Sbjct: 301 SFSR-FGLWPQILGAFTILVLLEGVRGFVSPVVIEDPRLWVLLYLPAILGVVVSGLFL 357


>gi|294678216|ref|YP_003578831.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477036|gb|ADE86424.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 376

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 140/367 (38%), Gaps = 9/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L  +   F    L +V + WV + +   + +    ++  ++L+ +   +P V
Sbjct: 1   MKRLDRYLLSQLMAIFGFFALVLVSVYWVNRAVLLFDKLIGDGQTAWVVLEFTALTLPKV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P          +  ++  +EL+++ + G S   L +PV    ++++  +    + 
Sbjct: 61  ISLVLPVAAFAAVLYAINRLSGESELVVMQSAGASPWRLARPVAVFGLIVAALMLALVHE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+ + +  A+    +T  +L E  F      + + I + +    L  IF+ D+R 
Sbjct: 121 LVPASRARLAERQAQVSQDVTARFLTEGSFQTPTAGITVYIREISDLGELLDIFLYDARG 180

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   IY A+   I        +++ DG      P    +++ +F  +T     A  + +
Sbjct: 181 QRAETIYTAEKALIVPSEAGPKLVMFDGTAQTLRPSDGSLALTRFSDFTYDLGGAIGTGL 240

Query: 239 VLKAN--DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + +  +     L+ P P         +     E + RL Q L   +  LI+  A    
Sbjct: 241 RGRIDWEEVPSRDLIAPGPELLAATGSTVAAAHLELNDRLAQPLMAPVAALIAAAAMMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
              R       I +++    G+    +        +P    + Y+     L  ++     
Sbjct: 301 GFSRLG-LWRQIGLAVLALIGLQSLSNVATSMTRADPALWALHYMPALAGLAGVALALSW 359

Query: 353 MIKKKYT 359
             +++  
Sbjct: 360 AGRRRKA 366


>gi|126462312|ref|YP_001043426.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103976|gb|ABN76654.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 376

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 137/363 (37%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSS 236
                 Y A+   +        +++ DG     +   + + + +F    Y L      S 
Sbjct: 181 PARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL P                 E H R+ Q        LI   A    
Sbjct: 241 PKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLM 353
           +  R       I  ++ +   V             +    P+ Y      F I  + L +
Sbjct: 301 SFSR-FGLWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFVIGILLLWI 359

Query: 354 IKK 356
            ++
Sbjct: 360 GQR 362


>gi|77463457|ref|YP_352961.1| permease [Rhodobacter sphaeroides 2.4.1]
 gi|77387875|gb|ABA79060.1| Predicted permease [Rhodobacter sphaeroides 2.4.1]
          Length = 376

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 137/363 (37%), Gaps = 8/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MARFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F    D + + I +      L+ + +VD RD
Sbjct: 121 LVPASRATLSARSAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSS 236
                 Y A+   +        +++ DG     +   + + + +F    Y L      S 
Sbjct: 181 PARSTAYTARRALLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +     LL P                 E H R+ Q        LI   A    
Sbjct: 241 PKRRVLEELPTMTLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLM 353
           +  R       I  ++ +   V             +    P+ Y      F I  + L +
Sbjct: 301 SFSR-FGLWWQILFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWI 359

Query: 354 IKK 356
            ++
Sbjct: 360 GQR 362


>gi|16125936|ref|NP_420500.1| hypothetical protein CC_1691 [Caulobacter crescentus CB15]
 gi|221234699|ref|YP_002517135.1| hypothetical protein CCNA_01762 [Caulobacter crescentus NA1000]
 gi|13423102|gb|AAK23668.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963871|gb|ACL95227.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 379

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 137/363 (37%), Gaps = 7/363 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++   +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQRQSALVFLKIILLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA++ ++   IS   
Sbjct: 61  LGIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVIAALISLISGLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     I++ + + +  +  + ++   F      L +     + +N +Q +FI     
Sbjct: 121 LQPWSARQIRETAFQIKTDVAATLVQPGQFTEPGPGLTVYAQSIDRDNKIQNLFIHQELP 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA--NSS 236
                 Y ++   I        +I+  G   + S     +    F  YT    S   +  
Sbjct: 181 NGAASTYSSREAEIATRKGEPVLIMRHGSNQQFSRD-GVLQYTSFDEYTFDLSSLFHSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+      +    +   +E H R    L+ +    +++ A    
Sbjct: 240 LLHYKIADRYPHELFFPDLTQEWEQRNK-DKLLAEGHSRFAGPLYNIALMSMALAAVLGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R         +  + +     GF  +    E +P+   + Y+     ++  +  I +
Sbjct: 299 SFSRMGYGKRIAAVGAAAAIVRIVGF-GVQAACEDDPWLNVLQYIVPLAATAWAMSQIFR 357

Query: 357 KYT 359
           +  
Sbjct: 358 QRV 360


>gi|259419313|ref|ZP_05743230.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
 gi|259345535|gb|EEW57389.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
          Length = 379

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 129/359 (35%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L      F    L +V + W+ + +   + +    +S+   L+IS   +P +
Sbjct: 1   MSRYDRYVLSQYLLFFGFFALILVAVFWINRAVSLFDWLIGDGQSVLAFLEISALSLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P      T  V   +N  +EL ++  TG+S   L +P +   +L +  +      
Sbjct: 61  VRMVLPLAAFAATVWVTNRLNSESELTVLRATGSSPWQLARPAMAFGVLSAAMMSALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   + ++   A+   +++   L    F      +   +   +P+ TL  +F+ D RD
Sbjct: 121 LLPASLAQMQLREAELSRSVSAKLLNAGNFLHPSAGITFFVGSIDPDGTLNNVFLTDQRD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y +    +    D   +IL DG   RK   +  +S   F  ++      + +  
Sbjct: 181 PSVEITYTSDRAYLVREDDMAHLILVDGLAQRKEAHNDRLSTTAFADFSYPLGDLSPART 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPE--LLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +     +N+  L      +   + E         E H R  +        +I +      
Sbjct: 241 MGARPLRNIPTLDLLRDRDEITQNEGHSAGAQAEELHLRFARAAVTFAVVMIGVSTLLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       + ++  +   +      +   +  N    P++YL       I ++ + 
Sbjct: 301 GFSRFG-IWKQVLVAFVLLILIEGMRGVVSEPVRDNAQMWPLIYLPAAIGVLISMIFLH 358


>gi|254453241|ref|ZP_05066678.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
 gi|198267647|gb|EDY91917.1| permease YjgP/YjgQ family protein [Octadecabacter antarcticus 238]
          Length = 372

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 132/352 (37%), Gaps = 5/352 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L +V I W+ + ++  + + +  +S  + L+++   +P+++ +V P 
Sbjct: 1   MLGQLLVFFGFFSLILVLIYWINRAVRLFDRLIADGQSAWVFLELTSLSLPSLIRIVLPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    V   M+ ++EL ++  TG S   L +PV+   +++++ + I  NI+ P    
Sbjct: 61  SAFVAAVYVTNRMSSDSELTVVQATGYSPFRLARPVIVFGVIVAVLMSILTNILVPLSTE 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +    A+    +T   L    F    DD+   I +  P   +  IFI +S        Y
Sbjct: 121 RLITRQAEIAQTMTARLLTPGEFLTPTDDVTFYIRELPPGGEMLDIFISESTSPTQRTTY 180

Query: 188 YAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA--N 243
            A    +    +   +++ DG     +  +  +   +F+ +     +  +   V K   N
Sbjct: 181 TASRAYLVRTENGPQLVMVDGLTQTLNLETSRLLTTRFEDFVYNVSALMNDDPVRKTSVN 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   LL P+        +  +  +   H R+ Q     + GL+   A       R   
Sbjct: 241 GLSTMALLRPSAETIADTNQTGDQLKLRGHDRIAQAALGFVAGLVGFSALVVGGFSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               I  ++ +   +             N    P +YL       I  +++ 
Sbjct: 300 LWRNIIFAVGLVILLKLLEGTGTSIATTNAALWPFVYLAGIGGVVISAMLLH 351


>gi|149914658|ref|ZP_01903188.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
           AzwK-3b]
 gi|149811451|gb|EDM71286.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Roseobacter sp.
           AzwK-3b]
          Length = 380

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 131/353 (37%), Gaps = 6/353 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + L+ +   +P V+ ++ P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIGDGQPAWVFLEFTALTLPGVIGVILPM 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                T  V   ++  +EL ++  TG S   L++PV+   IL+++ + +  + + P   S
Sbjct: 61  AAFAATVYVTNRLSTESELTVVQATGYSPWRLMRPVIVFGILIALMMSLLTHFLIPSSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    +T   L E  F      +   I    P+  L  +F+ D RD++    Y
Sbjct: 121 QLRLRQDEVSQNITAKLLTEGEFLHPAPGITFYIRDITPDGELHNVFMSDRRDSENTMTY 180

Query: 188 YAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            +    +  D +    +++ DG           +    F  ++    +  +S        
Sbjct: 181 TSNRAYLIQDPEGGTKLLMVDGLAQTVRRDGNRLFTTHFNDFSYDISALIASEATSLDKV 240

Query: 245 QNLSFL-LNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                L +  +P     R    +     E + R +Q L  ++  +I   +       R  
Sbjct: 241 TFAHTLDIARDPRAVADRTLSTVSQVIFELNNRFSQPLLCIVAAVIGFASLLLGGFSR-F 299

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                I ++ ++   +    S +   +  +    P++YL     + +  +++ 
Sbjct: 300 GVWRQILLAFTLLIVIKLVESRVSGLVLAHSDLWPLMYLPAALGALVTAVLLH 352


>gi|83952306|ref|ZP_00961038.1| Predicted permease [Roseovarius nubinhibens ISM]
 gi|83837312|gb|EAP76609.1| Predicted permease [Roseovarius nubinhibens ISM]
          Length = 372

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 125/359 (34%), Gaps = 6/359 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + + S  +S  + L+++   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLISDGQSSFVFLELTALTLPGVIAVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   ++  +EL ++  TG S   L +PVL   ++++  + +  +++ P    
Sbjct: 61  AGFAGAVYVTNRLSTESELTVMQATGYSPWRLARPVLIYGVIVAAMMSLLTHVLVPTSLH 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++   A+    +T   L E  F      +   I +  P   L+ +F+ D RD Q   IY
Sbjct: 121 RLETRKAEVSRNVTAKLLTEGEFLHPAGGVTFYIREITPEGELRDVFLSDRRDIQAPVIY 180

Query: 188 YAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
            ++   +        +++ +G           +    F  ++       S  ++   + +
Sbjct: 181 TSKMAYLVQEGGGTKLVMVNGLAQTAQTKGNRLFTTFFTDFSYDISGLISDDVINLTHAR 240

Query: 246 N--LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 L+                   E H R  Q L  V+  LI           R   
Sbjct: 241 YASTPALMTRAAEIAQISGVSEGVVTLELHNRFAQALMCVVAALIGFATLLLGTYSRFG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-FCISSIFLLMIKKKYTKI 361
               I ++  +   V      +   I   P   P+ Y         + LL+      ++
Sbjct: 300 VWRQILLAFLLLVAVKLVEGTLTSPILSAPELWPLAYAPPAMGFVLVVLLLYMASRPRL 358


>gi|83594275|ref|YP_428027.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577189|gb|ABC23740.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 396

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 149/369 (40%), Gaps = 13/369 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   YILR +     +  + ++ + W+I  L+ ++   +   S+   L+++  L+P  L 
Sbjct: 5   TLHRYILRNLLVGLAVGSVALIVLIWLINSLKFLDWFVNKGLSVATFLRLTLLLMPGFLT 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P             +  + EL+++   G     L +P L L  +L+   +     + 
Sbjct: 65  VFIPIALFAVVLFTYNRLAADRELIVMRAAGMGPWQLARPALALCAVLTGVGYWLTLSVV 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      + +  + +  ++   ++E  F ++ D L +   +   +  L  + I D+    
Sbjct: 125 PAMEGAFEAIKYEVRGEVSSLVIKEGQFNQMKDGLIVYAGERAKDGRLIDLMIHDTTGKT 184

Query: 183 THKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--I 238
           +     A+SG++  + +   I+L +G    ++  +  ++ + F SY +      +ST   
Sbjct: 185 SDLTVMAESGALVREGEGARILLINGNRQERNRQTGKVNFLYFDSYAVDLGGKAASTEMR 244

Query: 239 VLKANDQNLSFLL------NPNPNNP-NYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +  ++ LS L+        +P+ P  Y    +   R E H RL + L  + F LI + 
Sbjct: 245 FREERERPLSELISLKAGDRIDPDYPFTYEERHIRRMRMEAHLRLLRPLAHIGFLLIGLA 304

Query: 292 AADKRALVRQRKKIHPIF-ISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           A       R+      I  ++L + F     G + +  K       + ++ L    +  I
Sbjct: 305 AVLTGEFDRRGGNKRVILAVALVVLFQAGSLGAATVAKKSLDGLLLLDLMTLLPILVGWI 364

Query: 350 FLLMIKKKY 358
           +L+   +++
Sbjct: 365 WLVWPSERW 373


>gi|255264665|ref|ZP_05344007.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
 gi|255107000|gb|EET49674.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
          Length = 380

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 134/352 (38%), Gaps = 5/352 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L  +   F    L ++ + WV + +   + + +  +S  + L+ +   +P V+ 
Sbjct: 9   RLDRYMLSQLMMLFGFFSLVLIMVYWVNRAVILFDQLIADGQSAGVFLEFTALSLPNVIR 68

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P      +  V   ++ ++EL ++  TG S + L +PV+   +L++  + +  +++ 
Sbjct: 69  LVLPLSAFAASVYVTNRLSTDSELTVMQATGHSAVRLARPVIVFGLLVTALMMVLTHVLV 128

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S +    A+    +T   L E  F      +   + + + +  L  IF+ D+R+ +
Sbjct: 129 PTSLSRLNDREAEIAENVTARLLTEGTFLNPASGITFYVREISASGELLDIFLTDTRNPK 188

Query: 183 THKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
               Y A+   +    D   +++ +G     +  ++ ++   F   T        + S  
Sbjct: 189 RQITYTAEQSFLVRSDDGPQLVMINGLTQTLTLETQRLTTTTFADSTFDIGGLIDSGSRG 248

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +   +     LL P     +       T   E H R  Q L  V+  L+          
Sbjct: 249 RVNIREVATMDLLYPTQEIRDLTRRDDATLIHEGHGRFLQALLAVVAALVGFSTLLIGGF 308

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            R       I I++ +   +    S  +  I    +  PI+Y  +     I 
Sbjct: 309 SRFG-ISKQIVIAIFLLIAIKTVESVAVGAIRGQAHLWPIIYTPIAVGLVIS 359


>gi|146277168|ref|YP_001167327.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555409|gb|ABP70022.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 376

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 132/347 (38%), Gaps = 5/347 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L +V + W+ + +   + + S  +S  + L+ S   +P V
Sbjct: 1   MSRFDRYLLSQLVALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P      T  ++  +++ +EL+++  TG S   L +PV+   +++++ + +  N+
Sbjct: 61  IRLVLPLSAFAATIYIVNRLSQESELVVMQATGFSAFRLARPVILFGLIVAMMMIVLMNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R+T+   SA+     T  +L +  F      + + I + +    L  + +VD RD
Sbjct: 121 LVPASRATLSARSAEISENATARFLRDGEFLHPVRGVTLYIREISETGELNDLLLVDDRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                IY A+   +        +++ DG     +   + + + +F   T    +   S  
Sbjct: 181 RARSTIYTARRALLVRTETTPRLLMIDGSAQTLTREGRRLELTRFADVTYDLGAFMKSDG 240

Query: 239 VLKA--NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +    + +   LL P                 E H R+ Q    +   LI   A    
Sbjct: 241 PKRRVLEELSTPDLLAPTEALLAETRSTRAAALYEGHSRIAQPFLGLASSLIGFAALLLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  R       I  ++ +   V             +    P+ Y   
Sbjct: 301 SFSR-FGLWWQILFAVVLLIVVQTINVAASGVGVTDEALWPLAYAAP 346


>gi|302383687|ref|YP_003819510.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194315|gb|ADL01887.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 376

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 137/360 (38%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    L +C  +  I  + Q L ++ ++    +S+ +LLK++   +P +
Sbjct: 1   MTLIQKYLFRQISLPVLAACASLAGIGILSQTLDQLEIIVERGQSVWVLLKLTLLAVPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     LT + R  EL     +G SR  +I P  +LA+ +++ + ++  +
Sbjct: 61  FSVILPIGLFVGALIALTRLQREQELTAAYASGMSRWQMIAPGAWLAVCVAVVMLLTNVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I+P  + T ++ +   +  L    +EE  F +  + L + + +   N  L+ +FI   ++
Sbjct: 121 IQPWSQRTAREQAFSIRTDLAALLVEEGRFVQGPNGLTVYVQQIEQNGLLKNLFIY-IQN 179

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 + A          +  + +  G   + S  +  +  + F  Y         +  
Sbjct: 180 GDEVTTWDASEARFGRVDGQPVLTMKQGSWQQYS-SAGVLQQLVFDGYVFPLGQYVTDDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I  K  D  +  L NP                +E H RL+  L+ +    +++ A    
Sbjct: 239 KIRYKPADLWMGQLFNPTDA-LVRDTGSRGELLAEAHSRLSSPLYALTAMAMALTAILGG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           A  R          S      V      ++     N +     Y+     +++ L ++ +
Sbjct: 298 AFSRTGYSARIAKAS-GAFLLVRVVGYAVVAASAWNGWLNVFQYVLPIVATAVALRLLFR 356


>gi|126725340|ref|ZP_01741182.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
 gi|126704544|gb|EBA03635.1| Predicted permease [Rhodobacterales bacterium HTCC2150]
          Length = 367

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 142/359 (39%), Gaps = 6/359 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +  +F      +V + WV + +     + S   +  + L+ +   +P V+ +V P 
Sbjct: 1   MLSQLTVTFGFFAFILVAVYWVNRAIVLFEDLISDGHTALVFLEFTALALPNVILLVLPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + +  V   +   +E++++ + G S   L+ P L   + + + + I  +I+ P  R+
Sbjct: 61  AGFVASIYVANRLISESEMVVMQSAGHSAKRLMVPALIFGVGIFVMMSILSHILVPISRT 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            + +   +    +T  +L    F    +DL I + +++    L+ I + D R      IY
Sbjct: 121 ALAEREGELSQDVTTQFLNAGRFVHPSNDLTIYVREFSETGELRDILLTDDRSANIQTIY 180

Query: 188 YAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKAN 243
            A    +        +++  G+    +  +  +S + F   T    +   +S   VL   
Sbjct: 181 TANRAFLIKTETGPRLVMLSGQTQTLNRTTDRLSFVTFTELTYDLSALIPSSKERVLNMR 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           +     LL  +  + +        ++++ H R ++ L  +I  L+ +         R   
Sbjct: 241 ELFTPALLRGDQADLDRTNSTTAIFKAQAHGRFSKPLLGMILPLLGVAVMLVGGFNRMG- 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIKKKYTKI 361
               I  S  I   V   F+   +    NP   P++YL  +F ++ +++L+       +
Sbjct: 300 VSRQILASAVIIILVQMLFNAGENAAISNPTMWPMIYLPIVFAVALLWMLLFLTARPSL 358


>gi|148265754|ref|YP_001232460.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
 gi|146399254|gb|ABQ27887.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
          Length = 389

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 155/370 (41%), Gaps = 16/370 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+  LYI + I   FL+      F+  + ++L+   +V +    L  +L++  YL+P+ L
Sbjct: 3   KTLYLYIFKEIPPPFLLGVATFTFVLLMGRLLRLAEMVVTKGVPLADVLRMVFYLLPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E+  +  +G S   L+ PV   A++  +         
Sbjct: 63  LVTIPMAFLLAILLAFGRLSGDSEITAMKASGVSLYGLLPPVFCFALIAYLAGAFITVYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P   ++ K+L  +   A     ++E +F      L I   +YN    T+ GI I D RD
Sbjct: 123 VPWGNTSFKKLLVEVVEARASLGIKEKIFNDDFPGLVIYTDRYNQQKQTMSGILIQDERD 182

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANS 235
                  YA+SG I+ D       + L++G +HR    +    +++F++Y L    +  +
Sbjct: 183 PLEPSTIYARSGVINSDPATKSIRLRLDNGSIHRTQGKTG-YRLVEFRNYDLNINLNQAA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            T+     D +L+ L   N  +  +  +++   R E+H+R +     +IF L+ +     
Sbjct: 242 QTVNKNELDMSLAEL-RANLASGRFDAKMMRDMRLEYHRRFSLPFACLIFALVGM---PL 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFL 351
               ++  K     +S+ +    +   S      E+     P+L ++    LF    I+L
Sbjct: 298 GIQNQRSGKAAGFTMSIGLLLAYYIVLSAGKALGEREL-LSPLLAVWAPNLLFVSLGIYL 356

Query: 352 LMIKKKYTKI 361
                   +I
Sbjct: 357 FKTTAAEERI 366


>gi|322418227|ref|YP_004197450.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
 gi|320124614|gb|ADW12174.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
          Length = 387

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 141/360 (39%), Gaps = 16/360 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++   YI   I   FL+  +   F+  + + L+   +V         +L++  YL+P+  
Sbjct: 3   RTLYRYIFNEIPPPFLVGMVAFTFVLLMGRFLKLAEMVVEKGVPFTDVLRMVSYLLPSFW 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P L  ++L S+         
Sbjct: 63  LFTIPMALLLSILLAFGRLSGDSEVTAMKSCGISLYGLLPPPLVFSLLASLACLWVTVYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   S+ K+L  +         ++E +F     D+ I     +     ++G+ + D RD
Sbjct: 123 VPWGNSSFKKLMLEIARNSASVSIKEKVFNNAFPDMVIYADTLDTKAQNMEGVIVHDERD 182

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +     +A SG++  D +A      L +G +HR S    +  +++F+ Y L+   A  +
Sbjct: 183 PKAPTTIFAASGALFSDPKAHSMEFQLKNGSIHR-SEDGANYRMVQFQEYILRVALAEPT 241

Query: 237 TI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                KA++  +  L++P         + +   R E H RL      ++F  + +     
Sbjct: 242 PKGPRKASEMTIDELVHPPQ---VAAAKDVLARRLELHSRLALPFSCIVFTFVGV---PL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               R+  K     +S+++    +    GF  +  K    P+        LF ++  +L 
Sbjct: 296 GIQNRRSGKASGFSLSIAVILCYYIALSGFDTLGEKALLPPFLSGWGPNLLFLLAGGYLF 355


>gi|90419502|ref|ZP_01227412.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
 gi|90336439|gb|EAS50180.1| possible permease [Aurantimonas manganoxydans SI85-9A1]
          Length = 392

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 174/362 (48%), Gaps = 7/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI +        S   +V I W++Q L RI++V +S  + + +  I+  L+P +
Sbjct: 1   MTILERYIFKRAFVYAASSLTSLVLIVWIVQALSRIDVVKTSASAASNIFWIALMLLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V PF   +     L S+N ++E  +I   G S+  + +P++ L +L  + + +  N+
Sbjct: 61  FAGVLPFALLIGAIQALNSLNSDSERAVISAAGASQAVIARPIVALGLLGGLIMLLIGNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  +         +   +L+   F ++ D + I I   N   T++ + I D+RD
Sbjct: 121 VGPASMSAFQNGIRSINADMITLFLKPGRFEQVQDGIVISIGDVN-GATVESLVIADTRD 179

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
             +   Y+A+   I  +  +  ++L DG++HR++     +S+++F++Y     +   +T 
Sbjct: 180 PASDLTYFAREAKIIDEDASSLLLLFDGQLHRRNTADNSVSVIQFQTYAFDLAALRPATD 239

Query: 238 -IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++A++++ + L+ P+PN+  Y+ E   ++  E   R+T WLF + F L +IV A + 
Sbjct: 240 NSWVRASERSTAALIWPDPNDGLYQ-ERPHSFTEELTDRMTNWLFAIAFVLWAIVVAGQP 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  RQ      + + L     +       + +IEQ  +++ I YL       +  ++I +
Sbjct: 299 STNRQGTG-PAMTVGLCGGLVLKAAGFVTLSQIEQGVFWVVISYLLPLAAIVLNSVLIWR 357

Query: 357 KY 358
            +
Sbjct: 358 NF 359


>gi|89054305|ref|YP_509756.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
 gi|88863854|gb|ABD54731.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
          Length = 371

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/341 (19%), Positives = 133/341 (39%), Gaps = 4/341 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ YILR +   F    L +V + WV Q  +  + + +  +++ + L+ S   +P +
Sbjct: 1   MGQYDRYILRQLVALFGFFSLVLVSVYWVNQAARLFDRLIADGQNIGVFLEFSALTLPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + T  +   M   +EL+++   G S + L++PV     LL+I L +  NI
Sbjct: 61  VQLILPVSAFVATLYIFNRMISESELVVLQTAGLSALRLLRPVFVFGCLLAILLAVLVNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R    Q  A+ Q  LT  +L    F      L + I + +     + +F+ D+  
Sbjct: 121 LAPTARGQFTQRQAEVQDDLTGRFLRAGEFIHPAAGLTVYIREISELGEFRDLFLQDAST 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
                 Y A +  +        +++ DG        +  +S + F  +T    +   +  
Sbjct: 181 PGVEVTYTANTALLVRSDTGPRLVMFDGVAQTLDLDTGRLSTISFSDFTYSVGTLGGTGA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +   +     LL  N          L     E H RL Q LF +   LI+  +    +
Sbjct: 241 RQIDVRELPTPLLLRANQQIAGALNLPLSHLVFEGHDRLAQSLFVLFVPLIAAASLMLGS 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
             R       I I++++   +    +     +  +    P+
Sbjct: 301 FSRFG-VWKQILIAVALVLPMQIVRNASEAAVRADIEAWPM 340


>gi|126736391|ref|ZP_01752133.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
 gi|126714212|gb|EBA11081.1| hypothetical protein RCCS2_01329 [Roseobacter sp. CCS2]
          Length = 369

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 124/351 (35%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +   F    L ++ I W+ + +   + + +  +S  + L+ +   +P+V+ +  P 
Sbjct: 1   MLSQLMVLFGFFSLVLILIYWINRAVVLFDQLIADGQSAGVFLEFTALSLPSVMRLALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M+  +EL ++  TG S   L +PVL+  I++++ +    + + P   +
Sbjct: 61  AAFAAAVYVTNRMSTESELTVVQATGYSPFRLARPVLYFGIIVALMMSALMHFLVPMSAA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +    A+    +T   L E  F    + +   I    P   LQ IF+ D+R       Y
Sbjct: 121 RLADRQAEIAQNITARLLTEGQFLEPINGVTFYIRDITPAGELQDIFLSDTRSDAEQVTY 180

Query: 188 YAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
            A    +  D     +++ DG V      ++ +    F  +                 D 
Sbjct: 181 TATKAFLVRDNDTIQLVMLDGMVQTLRTENQRLFTTTFDDFAYNISDLIRQPRNRGRRDA 240

Query: 246 NL--SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            L    LLNP P              S  H R +Q +  ++  L+   A       R   
Sbjct: 241 YLFTWELLNPTPALEAETGRDAARLISLGHDRFSQSILGIVAALLGFSALMVGGYSR-FG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I  ++ +   V    +  +     +P    + YL       +   ++
Sbjct: 300 VWKQIIGAIFLIIVVKAVETTGLRIARSDPQLWMVAYLQSAVGFVMIWFLL 350


>gi|218459006|ref|ZP_03499097.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 250

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 91/231 (39%), Positives = 148/231 (64%), Gaps = 1/231 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +NI
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILLLAAVISVFSFFVDNI 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP+ ++  +Q+ A+    L  S +EE  F +LD+ LY++IS+      L+G+F+ D RD
Sbjct: 131 VEPRAKTVARQMIAETYADLLSSVIEEKTFRKLDEGLYVQISQRLAGRMLKGLFVADERD 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                IYYA+ G++D     +I++DGEVHRK+P   ++S++ F SY+    
Sbjct: 191 PAYELIYYAKEGAVDDTGTTLIMHDGEVHRKTPD-GNVSVINFDSYSFDLS 240


>gi|222054621|ref|YP_002536983.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
 gi|221563910|gb|ACM19882.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
          Length = 389

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 143/366 (39%), Gaps = 8/366 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   YI + I   F +      F+  + ++L+  ++V +    L  +L++  YL+P+ L
Sbjct: 3   STLYRYIFKEIPPPFFLGVATFTFVLLMGRLLRLTDMVVTKGVPLGDVLRMILYLLPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E++ +  +G S   L+ PV  LA++  +         
Sbjct: 63  LVTIPMAFLLAILLAFGRLSGDSEIIAMKASGISLYGLLPPVFSLAVITYLAGAFITIYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            PK  S  K L            ++E +F      + I    Y+     + GI I D RD
Sbjct: 123 VPKGNSAFKDLLVTVVENRVSLGVKEKVFNGDFPGIVIYCDGYDERTQVMSGIIIQDERD 182

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   A  G+I+ D  +    + L  G +HR +   +   +++F  Y L    + +S
Sbjct: 183 PLEPSTIMAGHGTINADHASRSVRLHLASGSIHR-TAGREGYRLVQFSDYDLHINLSQAS 241

Query: 237 TIVLK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             V +   D +L+ L   N N+ ++  +     R E+H+R +     +IF L+ +    +
Sbjct: 242 QAVKRDERDMSLAEL-RTNWNSNHFDNKGRLEMRLEYHRRFSLPFACLIFTLVGMPLGIQ 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +          L + + +      +  K   NP+    +   LF    I+L    
Sbjct: 301 NQRSGKAAGFAISIFLLLLYYIILSACKTLGEKELLNPFLAAWVPNMLFVAFGIYLFRKT 360

Query: 356 KKYTKI 361
               KI
Sbjct: 361 AAEEKI 366


>gi|221639315|ref|YP_002525577.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
 gi|221160096|gb|ACM01076.1| Permease YjgP/YjgQ family protein [Rhodobacter sphaeroides KD131]
          Length = 364

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 131/351 (37%), Gaps = 8/351 (2%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
              F    L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      
Sbjct: 1   MALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   
Sbjct: 61  TIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSAR 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
           SA+     T  +L +  F    D + + I +      L+ + +VD RD      Y A+  
Sbjct: 121 SAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRA 180

Query: 193 SIDLDRQA--IILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSSTIVLKANDQNLS 248
            +        +++ DG     +   + + + +F    Y L      S        +    
Sbjct: 181 LLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTM 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            LL P  +              E H R+ Q        LI   A    +  R       I
Sbjct: 241 TLLAPTADVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSR-FGLWWQI 299

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLMIKK 356
             ++ +   V             +    P+ Y      F I  + L + ++
Sbjct: 300 LFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWIGQR 350


>gi|332558334|ref|ZP_08412656.1| permease [Rhodobacter sphaeroides WS8N]
 gi|332276046|gb|EGJ21361.1| permease [Rhodobacter sphaeroides WS8N]
          Length = 364

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 130/351 (37%), Gaps = 8/351 (2%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
              F    L +V + W+ + +   + + S  +S  + L+ S   +P V+ +V P      
Sbjct: 1   MALFGFFSLVLVLVYWINRAVGLFDDLISDGQSALVFLEFSLLALPNVIRLVLPLSAFAA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           T  V+  +++ +EL+++  TG S   L +PV++  +++++ + +  N++ P  R+T+   
Sbjct: 61  TIYVVNRLSQESELVVMQATGFSAFRLARPVIWFGLIVALMMIVLMNLLVPASRATLSAR 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
           SA+     T  +L +  F    D + + I +      L+ + +VD RD      Y A+  
Sbjct: 121 SAEISQNATARFLRDGEFLHPADGVTLYIREVTETGELRDLLLVDDRDPARSTAYTARRA 180

Query: 193 SIDLDRQA--IILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSSTIVLKANDQNLS 248
            +        +++ DG     +   + + + +F    Y L      S        +    
Sbjct: 181 LLVRTDTTPKLLMIDGSAQTLTREGRRLELTRFDDVTYDLGAFMTGSGPKRRVLEELPTM 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            LL P                 E H R+ Q        LI   A    +  R       I
Sbjct: 241 TLLAPTAEVLEETRSTRAAALYEGHSRIGQPFLGFASSLIGFAALLLGSFSR-FGLWWQI 299

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLMIKK 356
             ++ +   V             +    P+ Y      F I  + L + ++
Sbjct: 300 LFAVLLLIVVQTINVAASGVGVTDEQLWPLAYAAPVTGFAIGILLLWIGQR 350


>gi|167646492|ref|YP_001684155.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348922|gb|ABZ71657.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 378

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 127/350 (36%), Gaps = 7/350 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++ L +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATLALVALALLARSLSEFDVLIEQRQSAMVFLKIIALALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA+L ++        
Sbjct: 61  LSVILPIALFVAALVALNRLHTEQEIVVCFAGGMSRWRVISPAMRLAVLATLISLAMSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I++     +  L  + +    F      L +     + +  +  +FI   + 
Sbjct: 121 VAPWSSRAIRETFFDMKSDLASTLVRPGEFTEPGPGLTVYAQVIDRDQIIHNVFIHQEKP 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 Y A+SG I   +    +IL  G     S  +  +  + +  YT    S   +  
Sbjct: 181 NGAAVTYTARSGVIAERKGLPVLILRKGSNQEFS-STGVLQYLSWDEYTFDLSSLFQSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+      + +      SE H RL   L+ +    +++ A    
Sbjct: 240 LLHYKIGDRYPHELFFPDLAQEWEQ-QNRVKLLSEGHWRLASPLYNMAMMSMALAAVIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           +  R         +  + +     GF       + N +   + Y      
Sbjct: 299 SFSRMGYGKRIAMVGAAAAMVQIVGFGVKA-ACDNNVWLNGLQYAVPLAA 347


>gi|197119769|ref|YP_002140196.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089129|gb|ACH40400.1| membrane protein, YjgP-related protein [Geobacter bemidjiensis Bem]
          Length = 391

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 140/363 (38%), Gaps = 17/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + ++++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGIPFSDVVRMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P +  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPMLFAACATLACLWVTVYA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   S  K+L  +   +     ++E +F      + +     +    T+ G+ + D RD
Sbjct: 127 VPWGNSGFKKLMVEIAQSSAGIAIKEKIFNNAFPGMVVYTQSLDTKAQTMGGVIVHDERD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +T    +A +G++  D ++      L +G +HR         +++F+ Y L+   A+ S
Sbjct: 187 PRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAE-EQGGYRMVQFQEYNLRVALADGS 245

Query: 237 T-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K ++  L  LL+P       + + + +   E+H RL       +F L++I     
Sbjct: 246 NKATRKVSEMTLDELLHPPK---GTQQKEIISRDLEYHSRLALPFSCFVFTLLAI---PL 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
               R+  K     +S+ +    +   S     + +     P+L  +   L  + +   L
Sbjct: 300 GIQNRRSGKAAGFSLSIGVILLYYVTLSAF-DTLGERGTLPPLLAGWSPNLIFLLAGAYL 358

Query: 353 MIK 355
             K
Sbjct: 359 FKK 361


>gi|56698597|ref|YP_168974.1| hypothetical protein SPO3780 [Ruegeria pomeroyi DSS-3]
 gi|56680334|gb|AAV97000.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 131/359 (36%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y LR +          +V + W+ + +   + + SS ++  + L+ +   +PT+
Sbjct: 1   MSKFDGYFLRQLLVLCGFFAFVLVGVFWISKAVSLFDRLISSGQTAMVALEFTALTLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P      T  V   +NR +E+ ++  TG+S   L +PV+   ++ +  L      
Sbjct: 61  VRTVMPMAAFCATVYVTNRLNRESEMTVMLATGSSPFRLARPVILFGLVCAAMLATITLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++   A+    +T   L +  F      + + I K + + TL  +++ D R 
Sbjct: 121 LRPAAMLRLEARQAEVAGDMTAQLLNDGQFMHPVKGVTVYIGKIDRDGTLNDVYLSDRRA 180

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +    Y +    +    +  A+++ +G   +     + +S   F+ ++    +     I
Sbjct: 181 PERVVTYTSSKAFLARSGEQIALVMVEGTALQMETGRRTLSTTVFRDFSYDISALAKRDI 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPEL--LETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + + + +  L      +     E         E  +RL+     V   LI        
Sbjct: 241 ERRQDIRGMPTLALATAFDGEGLAETYSRGEISEELQERLSWIGVSVAVTLIGFSTLMLG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              R       +  + +    +    S     +  +P    + +       ++ +L +K
Sbjct: 301 TFSR-FGLWPQLIAAFAGLIALEGMRSTATAFVGSHPGLWWVQHAPALGGIALSILFLK 358


>gi|89070356|ref|ZP_01157663.1| Predicted permease [Oceanicola granulosus HTCC2516]
 gi|89044003|gb|EAR50178.1| Predicted permease [Oceanicola granulosus HTCC2516]
          Length = 370

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 131/342 (38%), Gaps = 5/342 (1%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
              F    L ++ + WV + +   + + S  +S  + L+ S   +P ++ +V P    + 
Sbjct: 1   MTLFGFFSLVLILLYWVNRAVVLFDQLISDGQSALVFLEFSALSLPAIIRIVLPLAAFIA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              V   +   +ELL++ +TG S + L +P     +++++      +++ P   + +   
Sbjct: 61  ALYVTNKLTTESELLVVQSTGFSPVRLARPAFVFGLIVTLLTGALTHVLVPVAAAQLGAR 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
             +    +T  +L    F    D + + +   N    LQ +F+ D+R++    IY A + 
Sbjct: 121 QDEIASNITARFLTPGQFLNPVDGITVYVRDINDAGALQDLFLADTRESGRQVIYTAATA 180

Query: 193 SID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF- 249
            +        +++ DG         + +   +F  +T        S    +  ++N+   
Sbjct: 181 YLVRSEGGPQLVMVDGLAQTLRGSDQRLYTTRFDDFTYDIGRLIVSEEPGRLRERNVWSG 240

Query: 250 -LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            LL  +P             R+E H R+ + L   +  ++   A       R       I
Sbjct: 241 PLLQASPALQAQIERPAVALRAEVHDRMNKALLGFVGPVLGFAALLIGGFSR-FGVWRQI 299

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            +++ +   V    S     ++ +P   P+LY+      +I 
Sbjct: 300 VVAVVLVVVVTSLESVSSTLVDADPTRWPLLYMPTLVGLAIA 341


>gi|310816137|ref|YP_003964101.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
 gi|308754872|gb|ADO42801.1| putative permease, YjgP/YjgQ family [Ketogulonicigenium vulgare
           Y25]
          Length = 379

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 138/362 (38%), Gaps = 4/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L  +   F    L ++ + WV + +   + + S  + + + ++ +   +P +
Sbjct: 1   MGRFDRYLLSQLMTLFGFFSLVLIMVYWVNRAVALFDQLISDGQGMWVFVEFTALSLPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +  V   ++  +EL+++ +TG S   +++ V+   ++  + + I  ++
Sbjct: 61  IKLVLPLSAFVASVYVANRLSGESELVVVQSTGFSPARVMRAVMVFGLIAVVMVQILAHV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +    A+     T   L    F      + + I    P   LQ +F+ DSR 
Sbjct: 121 LVPLSNQRLNIRQAEVTQTATARILRAGEFMTPIAGVTLYIRSITPEGELQDVFLSDSRA 180

Query: 181 TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +    IY A    I        +++ DG +   S  ++ +S   F  +     S   S  
Sbjct: 181 SLADTIYTASRAYIVRTERAPQLVMVDGSIQNLSHQTERMSFTTFSDFAYDLSSILPSVD 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               + +N + L      +        +  R+E H RL++ L  +I  L+          
Sbjct: 241 PAALSLRNATTLQLLLARDEMTLLFGADNIRTEIHDRLSEPLLGLIGPLLGFATLLIGGF 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKK 357
            R       I  ++ +   V    S     I ++      LYL  +F +    LL+    
Sbjct: 301 SR-FGLSRQIAAAVGLVILVKMIESTATGAIRRDAGLWWTLYLPAVFGLGITGLLLFLAA 359

Query: 358 YT 359
             
Sbjct: 360 RP 361


>gi|83945296|ref|ZP_00957645.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851466|gb|EAP89322.1| hypothetical protein OA2633_00975 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 375

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 146/348 (41%), Gaps = 8/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y  R     FL +   +  +A + Q L  ++L++   E+  +L+ I+   +P V
Sbjct: 1   MTLFQRYTFRQALWPFLGAMAALTGLAVLTQSLSNLDLMAERGETALVLITITVLAMPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +  ++EL +    G SR   + P L LAI + +   +    
Sbjct: 61  IALLLPIAVFLAVAIALNRLTSDSELTVAAAAGMSRFQRVSPFLRLAIYVVLVNLVINLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     ++Q   + +  L  S++ E  F  L D +   + + + ++ L  +FI+D R 
Sbjct: 121 VQPASFRLMRQQLFEIRTDLAASFMREGEFVPLGDQVTFYVREISDDSVLNDVFIMDDR- 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
           T     Y A+ G I    +  ++   DG   +    S  ++ + F S    L     N++
Sbjct: 180 TGQSAAYAARRGRIAATDRGPVMLLEDGVRTQVD-QSGVLTNLSFDSTKVELTLFVDNTA 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           ++  K +D+ L  LL P P +   R        +E H RL+  L+ + F LI++ A    
Sbjct: 239 SLFFKESDKYLPELLRPTPADIA-RAGGKGRLYAEGHYRLSAPLYNLAFALIALAAYMSG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
              R+      + I+ + +  +      I    E +     + YL   
Sbjct: 298 E-HRRIGYGRNLIIAGASAVVLRLTGFAIQAAAESDDAMNAVQYLVPL 344


>gi|159043739|ref|YP_001532533.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
 gi|157911499|gb|ABV92932.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
          Length = 380

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 128/344 (37%), Gaps = 6/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  ++ YIL  +  +F    L IV I W+ + ++    +S   + L +  ++S   +P +
Sbjct: 2   LARYDRYILGRLMVTFGFFTLIIVLIYWINRSIRLFERLSGDGQGLALFAQLSLLSLPYL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P        +    M  ++E + +   G S   +++P L++ ++ +  + +  ++
Sbjct: 62  IYLMLPLAAFASAVSTGNRMGSDSETVALQAAGISAFRIVRPALYMGVMAAALMLLLAHL 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R  I  L  +    ++   LE   F    D + + +++      L  + + D RD
Sbjct: 122 LVPMSRVAIADLEEQLADEVSARLLEPGKFQSPIDGVTVFVAEITGEGVLSKVLLSDQRD 181

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSS 236
                IY A    +        +++  G           +S ++F+ + L          
Sbjct: 182 PAEEVIYTANQALLVRSDTGPQLVMISGLAQ-FLRADGTLSTLQFEDFALGLGEVEVPED 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            ++      + + LL  +P +     +    + SE H+RL      +   L+   A    
Sbjct: 241 RVLRDLRGWDTARLLRADPADLESVGKSRGAFLSEAHRRLANPALAISTALLGFSALLVG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
              R           L++   +    +      + +    P+LY
Sbjct: 301 GFSRFGFWQQVAGAILAL-IVIQLSVNMSEEIAQSDAAAWPVLY 343


>gi|157804262|ref|YP_001492811.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
 gi|157785525|gb|ABV74026.1| hypothetical protein A1E_05575 [Rickettsia canadensis str. McKiel]
          Length = 360

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 158/364 (43%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y ++ I    ++    +  I W+ Q+L+ + L       +     +   ++PT+
Sbjct: 1   MLLYEKYFIKNILPLLIVVTFSVTSIVWITQVLKLLYLF-DKGIKVMDFFSLIVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +++I+  +G   + L  P L++A+++ +  +   + 
Sbjct: 60  LFILLPVITVIAVIYIYNNLKVERQIIILQASGVHNVQLALPALYVALIVMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K   +  +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 120 IMPLSHINLKSRLSFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-----A 233
                + +A SG+++   +     LN G       I+ +++ + F S  ++ ++      
Sbjct: 180 ADNLSVVFADSGTLNIYDNSPIFELNKGLRQE-HDINGNLTQLTFNSLMIKLQNDNPLIP 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 239 QRTKHNKEANEYYISELLAP-PHDLAVTKKI--KLIAEAHQRIIWPLYNFVLPFLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 296 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLNFIFACYSNLVIALTIGLYL 354

Query: 354 IKKK 357
             +K
Sbjct: 355 FVRK 358


>gi|39997020|ref|NP_952971.1| hypothetical protein GSU1922 [Geobacter sulfurreducens PCA]
 gi|39983908|gb|AAR35298.1| membrane protein, putative [Geobacter sulfurreducens PCA]
          Length = 399

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 127/343 (37%), Gaps = 9/343 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YI       F +      F+  + ++L+   +V +       + ++  Y++P+  
Sbjct: 14  RLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFARGVPFLDVTRLILYMLPSFF 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +     +  ++ ++E+  +  +G S  T+  PV+   ++            
Sbjct: 74  LVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVSVYA 133

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            P   +  K+             + E +F      L I +  ++P +  + GI I D R+
Sbjct: 134 LPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHDERN 193

Query: 181 TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +  + +     + LN+G +HR    +    +++F SY L        
Sbjct: 194 PDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGI-GTGGYRLVEFTSYDLSIALQREQ 252

Query: 237 T-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               L   D  L  LL     +P  +P+L+     E HKR       V+F +I++    +
Sbjct: 253 QKARLNEEDMTLGELLAR-MKSPGEQPKLVREMHFELHKRFALPFACVVFAVIAVPLGIQ 311

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
                +        I L + + +       +++    P ++ +
Sbjct: 312 NQRSGRAGGFAAGIILLMLYYILMSAGKT-VNEKGIAPAFVAV 353


>gi|15893268|ref|NP_360982.1| hypothetical protein RC1345 [Rickettsia conorii str. Malish 7]
 gi|15620488|gb|AAL03883.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 378

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 158/365 (43%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 19  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 78  LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 138 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 197

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
                + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N    
Sbjct: 198 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVS 256

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 257 QRTKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVF 313

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 314 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYL 372

Query: 354 IKKKY 358
             +K 
Sbjct: 373 FVRKR 377


>gi|238651117|ref|YP_002916975.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
 gi|238625215|gb|ACR47921.1| hypothetical protein RPR_07620 [Rickettsia peacockii str. Rustic]
          Length = 369

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 158/365 (43%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVITVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSN 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
                + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N    
Sbjct: 189 ADNPSVVFASSGTLNIYDNSPIFELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVS 247

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 248 QRTKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVF 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 305 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYL 363

Query: 354 IKKKY 358
             +K 
Sbjct: 364 FVRKR 368


>gi|165933910|ref|YP_001650699.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
 gi|165908997|gb|ABY73293.1| hypothetical protein RrIowa_1576 [Rickettsia rickettsii str. Iowa]
          Length = 369

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 158/365 (43%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVIMVITVIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
                + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N    
Sbjct: 189 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVS 247

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 248 QRTKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVF 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 305 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYL 363

Query: 354 IKKKY 358
             +K 
Sbjct: 364 FVRKR 368


>gi|149915564|ref|ZP_01904090.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
 gi|149810456|gb|EDM70299.1| hypothetical protein RAZWK3B_06402 [Roseobacter sp. AzwK-3b]
          Length = 376

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 129/354 (36%), Gaps = 5/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y++R +   F    L ++ I W+ + L+    +    +S  +LL++    +P V
Sbjct: 1   MTKFDQYVIRKLITLFAFFALILIAIFWLDKALRMFERLLGKGQSNWLLLELILLTLPPV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P        +V   ++   E+ I+  +G S   +I+P+    IL +  +    N 
Sbjct: 61  VASILPIASFASAVSVTNRLSSEAEITIMKASGCSTYRIIRPIFIFGILTTSLMAWLTNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +  L ++    +T S+L E  F      + + I K   +  L+ IF+ D RD
Sbjct: 121 ILPESGKRLSSLRSQVDQNITSSFLTEGEFLHPTPGVTLFIGKVTQDAELRRIFLSDRRD 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  A+    +       +++ DG           + + +F+ Y L       +T 
Sbjct: 181 LRETIIITAEKAYTEHSPTTVQLLMVDGTTQILRENDNKLFVGRFEEYALDISELVETTY 240

Query: 239 VLKA--NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +          L+             L     E H R  Q +   I  ++        
Sbjct: 241 STQKTVTQAKTVELIKQPSEVIASTKATLGEVAFELHNRFAQPILCAIAAVLGATTLLTG 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  R       I I+  +  G+    S +   +  +     ++Y+     + + 
Sbjct: 301 SYSR-FGVWRQIGIAFFLLVGLKLVESAVSAHVLNDSGLWFLMYVPSISGAVLI 353


>gi|295689676|ref|YP_003593369.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295431579|gb|ADG10751.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 380

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 129/352 (36%), Gaps = 7/352 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+ R +    L++   +V +A + + L   +++    +S  + LKI    +P +
Sbjct: 1   MRLIERYLFRQLLGPTLLATAALVALALLARSLSEFDVLVEQRQSAVVFLKIILLALPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++   E+++    G SR  +I P + LA++ ++   IS   
Sbjct: 61  LAIMMPLALFVAALVALNRLHTEQEIVVCFAGGMSRWAVISPAMRLAVMAALISLISGLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P     I++ +   +  +  + ++   F      L +     N +N +Q +FI     
Sbjct: 121 LQPWSARQIRETAFDIKTDVASTLVQPGQFTEPGPGLTVYAQSINRDNKIQNLFIHQEMP 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
                 Y ++   I     +  +I+  G   + S     +    F  YT    S   +  
Sbjct: 181 NGGASTYSSREAEIATRKGQPVLIMRHGSNQQFSRQ-GVLQYTSFDEYTFDLSSLFRSDE 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K  D+    L  P+      R +  +   +E H R    L+ +    ++I A    
Sbjct: 240 LLHYKIADRYPHELFFPDMTQDWER-QNRDKMLAEGHSRFAGPLYNLALMAMAIAAVIGG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              R       I    + +  V      +      +P    + YL      +
Sbjct: 299 PFSRMGYGKR-IAAVGAAAGVVRIAGFGVQAACADSPELNVLQYLVPLTAMA 349


>gi|149201833|ref|ZP_01878807.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
 gi|149144881|gb|EDM32910.1| permease YjgP/YjgQ [Roseovarius sp. TM1035]
          Length = 373

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 122/341 (35%), Gaps = 5/341 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + ++ +   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIFWINKAVRMFDRLIGDGQPAWVFVEFTALTLPGVIGVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V+  ++  +EL ++  TG S + L +PV    +++++ + +  + + P   S
Sbjct: 61  AAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVFVFGVIVAVMMSLLAHFLIPSSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    +T   L E  F      +   I +   +  L+ +F+ D RD +    Y
Sbjct: 121 QLRLRLDEVSRNITAKLLSEGEFLHPAPGVTFYIREITLSGELRDVFLSDRRDPEAPVTY 180

Query: 188 YAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV--LKAN 243
            +    +        +++  G           +    F  ++    S     +V   +  
Sbjct: 181 TSSRAYLVQEGGGTRLVMVSGLAQNIRAEQNRLFTTYFDDFSYDISSLVRRDVVNLDEVA 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 +L             +    ++ H R+T  L  VI  L+        A  R   
Sbjct: 241 FAGTLEMLRDPEAVAARTGVSMGAVMAQMHGRITAALLCVIAALVGFCTLLVGAHSR-FG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
               + ++  +  G+    S ++  +  +    P+LYL   
Sbjct: 300 VWRQVLLAFGLLVGLKIVESLVLAPVLASAVLWPLLYLPAL 340


>gi|78222463|ref|YP_384210.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193718|gb|ABB31485.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 418

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 135/361 (37%), Gaps = 12/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI +     F++      F+  + ++L+   +V +       + ++  Y++P+ L
Sbjct: 32  SILFRYIFKETAVPFVLGMAVFTFVLLMGRLLKLAEMVFAKGVPFLDVCRLILYMLPSFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ ++E+  +   G    +L+ PV   A+L  +         
Sbjct: 92  LVAIPMAFLLAVLLSFGRLSADSEVTAMKAGGVGLGSLLTPVFTFAVLAYLVTTFITVFA 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            P   ++ K+   +   +   + ++E +F      L + I  Y+  ++ + GI I D R+
Sbjct: 152 LPWGNTSFKRFLYEVIESRAATTIKEKVFIDDFPGLVVYIDDYDQTSHQISGILIHDERN 211

Query: 181 TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANS 235
                  +A +G I    +     + L +G +HR         +++F+SY L  +   N+
Sbjct: 212 PDEPMTIFASTGIIAAAPEEKNVRLHLVNGSIHRGI-DPGGYRLVEFRSYDLHVDLRQNA 270

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   D  L  L+  +  N     +       E HKR       ++F ++ +     
Sbjct: 271 KKNQFDEQDMTLKQLIA-SRGNRQNNEKFRRDVSIELHKRFALPFACIVFAMVGV---PL 326

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMI 354
               ++  +       + I    +   S      E+    IP+ ++L     ++  + ++
Sbjct: 327 GIQNQRSGRAGGFSAGIIILMLYYVVMSAGKTIAEKEILPIPLAVWLPNVFFTAFGVYLL 386

Query: 355 K 355
           +
Sbjct: 387 R 387


>gi|157826358|ref|YP_001494078.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
 gi|157800316|gb|ABV75570.1| hypothetical protein A1C_06735 [Rickettsia akari str. Hartford]
          Length = 360

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 155/365 (42%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVVTFSLTSIVWITQILKLLYLF-DKGIKVMDFFNLIVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 60  LFILLPVITVIAIIYIYNNLKVERQLIILQASGVNNVQLALPALYVALIVMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 120 IMPLSHINLKSHLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-----SA 233
                + +A SG+++   +     LN G       ++ +++ + F S  ++ +     ++
Sbjct: 180 ADNPSVVFAGSGTLNIYDNNPIFELNKGLRQEYD-VNGNLTQLTFDSLMIKLQNDNHLAS 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P  +    +        +E H+R+   L+  +   +++   
Sbjct: 239 QRTQHNKEANEYYISELLAPTHDLVITKKI---KLIAEAHQRIIWPLYNFVLPFLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 296 LRYPYSKKTTFMPVLFSTLTVLLVTSIHF-ILQNFASKNLDFIFACYSNLVIALTIGLYL 354

Query: 354 IKKKY 358
             +K 
Sbjct: 355 FVRKR 359


>gi|91206136|ref|YP_538491.1| putative permeases [Rickettsia bellii RML369-C]
 gi|91069680|gb|ABE05402.1| Putative permeases [Rickettsia bellii RML369-C]
          Length = 360

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 167/366 (45%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  + W+ Q+L+ + L       +   L +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLF-DKGIKVMDFLSLIILVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++++  +   + 
Sbjct: 60  LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K   +  +     S +EE  F ++  D+ + I K +  N ++G+ I D+R+
Sbjct: 120 VMPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
           T    + +A SG ++   +     L+ G       I+ +I+ + F S  ++ ++ N    
Sbjct: 180 TDNPSVVFANSGILNIHENDPIFELSKGSRQEYD-INGNITQLTFDSLMIKLQNDNPLIS 238

Query: 236 --STIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +T   +AN+  +  LL P  + NP  + +L+    +E H+R+   L+  +   +++  
Sbjct: 239 QRTTHNKEANEYYIEELLEPPVDLNPMKKIKLI----AEAHQRIIWPLYNFVLPFLALAV 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF-L 351
             K    ++   +  +F +LS+       F  + +   +N  +I   YL +F I SI   
Sbjct: 295 FLKYPYSKKTTFMPILFAALSVLIATSAHF-TLQNFASKNLAFITACYLNIFFILSIGLY 353

Query: 352 LMIKKK 357
           L I+K+
Sbjct: 354 LFIRKR 359


>gi|298506037|gb|ADI84760.1| membrane protein, YjgP-related [Geobacter sulfurreducens KN400]
          Length = 388

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 127/343 (37%), Gaps = 9/343 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YI       F +      F+  + ++L+   +V +       + ++  Y++P+  
Sbjct: 3   RLLFRYICTETAVPFALGLTVFTFVLLMGRLLKLAEMVFARGVPFLDVTRLILYMLPSFF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +     +  ++ ++E+  +  +G S  T+  PV+   ++            
Sbjct: 63  LVAIPMAFLLAVLLAMGRLSADSEVTAMKASGMSIGTIAVPVIAFGVITYAATTFVSVYA 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            P   +  K+             + E +F      L I +  ++P +  + GI I D R+
Sbjct: 123 LPWGNTAFKKFLHGVIETRAAMSITEKVFNDEFPGLVIYVDGFDPKSGRISGILIHDERN 182

Query: 181 TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +  + +     + LN+G +HR    +    +++F SY L        
Sbjct: 183 PDEPSTIFAASGQLATNPEERIVRLRLNNGGIHRGI-GTGGYRLVEFTSYDLSIALQREQ 241

Query: 237 T-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               L   D  L  LL     +P  +P+L+     E HKR       V+F +I++    +
Sbjct: 242 QKARLNEEDMTLGELLAR-MKSPGEQPKLVREMHFELHKRFALPFACVVFAVIAVPLGIQ 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
                +        I L + + +       +++    P ++ +
Sbjct: 301 NQRSGRAGGFAAGIILLMLYYILMSAGKT-VNEKGIAPAFVAV 342


>gi|229587242|ref|YP_002845743.1| Putative permease [Rickettsia africae ESF-5]
 gi|228022292|gb|ACP54000.1| Putative permease [Rickettsia africae ESF-5]
          Length = 369

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 158/365 (43%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L++A+++ +  +   + 
Sbjct: 69  LFILLPVIMVITVIYIYNNLKVERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSN 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
                + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N    
Sbjct: 189 ADNPSVVFAGSGTLNIYDNSPIFELNKGIRQEYD-VNGNLTQLTFDSLIIKLQNDNPLVS 247

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 248 QRTKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVF 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 305 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYL 363

Query: 354 IKKKY 358
             +K 
Sbjct: 364 FVRKR 368


>gi|329850877|ref|ZP_08265722.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
 gi|328841192|gb|EGF90763.1| hypothetical protein ABI_37960 [Asticcacaulis biprosthecum C19]
          Length = 385

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 137/355 (38%), Gaps = 12/355 (3%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           +      +   +  IA + Q L +  LV    +S    ++++   +P +  ++ P    +
Sbjct: 1   MIVPVAGAVAALTAIALISQSLTQFELVVERGQSAWTFIRVTLLSMPLLSGLIFPIALFV 60

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            T   LT +    E      +G S   +  P++ + +   +F   S   ++P    ++++
Sbjct: 61  GTLVALTRLQGEHEFTAAFASGMSLRQVSSPIIRIGVYFLLFSLASNLFLQPWSARSMRE 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQ 190
              K +  L  + ++E  F      L I + + + N+ L+ I+I   + +    + Y A+
Sbjct: 121 ELFKVKNDLVSTLVKEGEFSTSPSGLTIYVQRIDQNSLLRQIYIRIPATEGGADRTYVAR 180

Query: 191 SGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKANDQN 246
            G I        +IL +G     S    ++  + F   ++      A+  ++  K +++ 
Sbjct: 181 EGKITQVGTESLLILRNGSTQWVS--GGELDHITFDETSIPISDYFASDDSLNFKESERY 238

Query: 247 LSFLLNPNPNNP----NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           L  L  PN   P    NY  + +    +E H RL   L+ + F L++I+A       R  
Sbjct: 239 LHELFFPNLALPGDGGNYERKNVGKLMAEGHARLASPLYNLSFVLLAIMAVLGGGFSR-G 297

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                I I+  ++         +     +      + YL       + + ++ K+
Sbjct: 298 GYTQRIAIAAGVAVTARLLGVVMQTIGAEAAILNILQYLVPLIPIIMCVRLLNKR 352


>gi|157826432|ref|YP_001495496.1| putative permeases [Rickettsia bellii OSU 85-389]
 gi|157801736|gb|ABV78459.1| Putative permeases [Rickettsia bellii OSU 85-389]
          Length = 360

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 167/366 (45%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  + W+ Q+L+ + L       +   L +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIVITFSMTSLVWITQVLKLLYLF-DKGIKVMDFLSLIILVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++++  +   + 
Sbjct: 60  LFILLPIITVITIIYIYNNLKIERQLIILQTSGVGNLQLALPALYVALIVALLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +K   +  +     S +EE  F ++  D+ + I K +  N ++G+ I D+R+
Sbjct: 120 VMPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKDITVYIDKKSTGNVMKGVIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
           T    + +A SG ++   +     L+ G       I+ +I+ + F S  ++ ++ N    
Sbjct: 180 TDNPSVVFANSGILNIYENDPIFELSKGSRQEYD-INGNITQLTFDSLMIKLQNDNPLIS 238

Query: 236 --STIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +T   +AN+  +  LL P  + NP  + +L+    +E H+R+   L+  +   +++  
Sbjct: 239 QRTTHNKEANEYYIEELLEPPVDLNPMKKIKLI----AEAHQRIIWPLYNFVLPFLALAV 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF-L 351
             K    ++   +  +F +LS+       F  + +   +N  +I   YL +F I SI   
Sbjct: 295 FLKYPYSKKTTFMPILFAALSVLIATSAHF-TLQNFASKNLAFITACYLNIFFILSIGLY 353

Query: 352 LMIKKK 357
           L I+K+
Sbjct: 354 LFIRKR 359


>gi|254418640|ref|ZP_05032364.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
 gi|196184817|gb|EDX79793.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
          Length = 397

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 138/360 (38%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I    + +C  +  I  + Q L ++ ++    +S+ +++K++   +P +
Sbjct: 20  MTLIQRYLFRQISLPVVAACASLAGIGILSQSLDQLEVIVERGQSVWVMVKLTLLALPQL 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     LT M R  EL      G +R  +I P   LA L+ I   +    
Sbjct: 80  LAVILPIGLFVGALIALTRMQREQELTAAFAGGMTRWQVISPAARLAFLVLILNLVMTLF 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
            +P  +   +  +   +  L    +EE  F +  D L + + +   N  L+ +F+   D 
Sbjct: 140 AQPWAQREARNQAFAIRTDLAALLVEEGQFVQGPDGLTVYVQQIEQNGLLKNLFVYLDDG 199

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT--ESANSS 236
           + TQ      A+ G    +   + + DG   + S     +  + F  Y       S  + 
Sbjct: 200 KSTQNWSAAEARFGRDAANEPVLTMIDGSWQKYS-SRGVLETLSFDRYDFPLGQFSGVTE 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I  K  D  L  LL P+P              +E H R+   L+ ++   +++ A    
Sbjct: 259 QIRYKPADLYLRQLLTPSPR-VLETAGSRGELLAEAHARIAAPLYALVAMAMALAAIMGG 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +  R    +     +  +   V      ++     NP+   + YL    + +  + ++ +
Sbjct: 318 SFSRTGYSLRIAKAA-GVFLLVRVIGYGLVAASAWNPWMNILQYLAPLIVVAAAVRLLFR 376


>gi|42523904|ref|NP_969284.1| YjgP/YjgQ permease [Bdellovibrio bacteriovorus HD100]
 gi|39576111|emb|CAE80277.1| predicted permease YjgP/YjgQ family [Bdellovibrio bacteriovorus
           HD100]
          Length = 367

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 146/363 (40%), Gaps = 17/363 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            YI   +  SF++  L  V I  + Q+L+          ++  + +I GY+I ++LP++ 
Sbjct: 11  QYIFFEMLPSFILGLLVFVSIILMFQVLRLTEFALVHGVAMKTIAEIIGYVIISMLPILF 70

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P             +++++E++ +  +G    TL+ P L LA L+ +        I P  
Sbjct: 71  PMALLFSVLLTYGRLSQDSEIVAMKASGLPMGTLLLPALILATLVGVISAQMSFNIAPWG 130

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTH 184
               + L ++       + ++E  F     D+ I  ++ N +   L+ +FI D ++    
Sbjct: 131 NRQFEVLYSRLANTKAAAIIKEGTFAEGFFDMVIYANEVNTDKGLLKKVFIYDEKNGDVP 190

Query: 185 KIYYAQSGSIDLDRQA------IILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSST 237
               A++G I  D         + LN GE+HR++     IS   F +Y ++     N   
Sbjct: 191 LTIIAKAGEIVPDPTRPGHEILLQLNQGEIHRQAKTHTKIS---FDTYDVRFSEPQNIEE 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                    L  + N    +   + E+  T +SE+HKR    +  ++F +I +       
Sbjct: 248 KAKSPPSLTLEEVRNRLKEDIKDK-EVRRTLQSEYHKRWAISVLCIVFAMIGV--GLGTT 304

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIK 355
             R+  K   + + + I    +W          ++      L ++      +++ +  ++
Sbjct: 305 TNRRAAKAGGMILCIGI-IIFYWILYVAAEGAARSGALPAALAIWTPNVLFAALGVETLR 363

Query: 356 KKY 358
           + +
Sbjct: 364 RNW 366


>gi|84516313|ref|ZP_01003673.1| Predicted permease [Loktanella vestfoldensis SKA53]
 gi|84510009|gb|EAQ06466.1| Predicted permease [Loktanella vestfoldensis SKA53]
          Length = 369

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 131/351 (37%), Gaps = 5/351 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L  +        L +V +  + + +   + + +  +S  + ++ +   +P+V+ +  P 
Sbjct: 1   MLSQLIMLCGFFGLVLVLVYSINRAVLLFDQLIADGQSAGVFVEFTALTLPSVIRLALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V   M  ++EL+++  TG S   + +PVL+  +++++ + +  + + P+  +
Sbjct: 61  AAFAAAIYVTNRMTNDSELVVVQATGYSLFRIARPVLYFGLIVALLMSLLMHFLVPRSAA 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            +     +    +T   L    F      +   I   +P+  L  +F+ D+R  +    Y
Sbjct: 121 QLALRQTEIARNVTARLLTPGTFTEPIAGVTFYIRDLSPDGELFDLFLSDTRGIEDQVTY 180

Query: 188 YAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTIVLKAN 243
            A    +  +     +++ DG V       + +   +F  ++       A  +    +A+
Sbjct: 181 TASRAFLVREAQETQLVMIDGMVQTLRLADQRLFTTRFAEFSYNVGGLLAPVTQAGRRAS 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             +   LL+P P              ++ H R +Q L  ++  LI        +  R   
Sbjct: 241 HLSTWELLHPTPALVAETGSSAARMIADGHDRFSQSLLGMVAALIGFATLMVGSYSR-FG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               I  ++++   V    +  ++    +     + YL       I   ++
Sbjct: 300 VWRQIVAAIALIVVVKALETAGLNAARADAQLWFLTYLPGAGGLVIVWCLL 350


>gi|85706342|ref|ZP_01037436.1| Predicted permease [Roseovarius sp. 217]
 gi|85669115|gb|EAQ23982.1| Predicted permease [Roseovarius sp. 217]
          Length = 374

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 119/331 (35%), Gaps = 5/331 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F    L +V I W+ + ++  + +    +   + ++ +   +P V+ +V P 
Sbjct: 1   MLSQFMVLFGFFALVLVSIVWINKAVRMFDRLIGDGQPAWVFVEFTALTLPGVIGVVLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                   V+  ++  +EL ++  TG S + L +PVL   +++++ + +  + + P   S
Sbjct: 61  AAFAAAVYVVNRLSSESELTVMQATGYSPLRLARPVLVFGVIVAVMMSLLAHYLIPGSLS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
            ++    +    ++   L +  F      +   I +      L+ +F+ D RD +    Y
Sbjct: 121 QLRLRQDEVSRNISAKLLSDGEFLHPAPGITFYIREITQTGELRDVFLSDRRDPEAPVTY 180

Query: 188 YAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV--LKAN 243
            +    +        +++  G           +    F  ++    S  S  +V   +  
Sbjct: 181 TSSRAYLVQEGGGTRLVMVSGLAQNIRADQNRLFTTYFDDFSYDISSLVSRDVVNLDEVA 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             N   +L               T  S+ H R+T  L  VI  L+        A  R   
Sbjct: 241 FANTLEMLRDPEAVAARTGTSYGTVMSQTHGRITAALLCVIAALVGFCTLLVGAHSR-FG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
               + ++  +  G+    S ++  +  N  
Sbjct: 300 VWRQVLLAFGLLVGIKIVESIVVAPVLLNGA 330


>gi|157965014|ref|YP_001499838.1| putative permease [Rickettsia massiliae MTU5]
 gi|157844790|gb|ABV85291.1| Putative permease [Rickettsia massiliae MTU5]
          Length = 370

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 155/363 (42%), Gaps = 13/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+L 
Sbjct: 13  LYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLF 71

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +    +  ++    +L+I+  +G   + L  P L++A+++ +  +   + I 
Sbjct: 72  ILLPVITVITVIYIYNNLKVERQLIILQASGVDNVQLALPALYVALIVMLLAYYISSTIL 131

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+  
Sbjct: 132 PLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNAD 191

Query: 183 THKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS----- 235
              + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N      
Sbjct: 192 NPSVVFAGSGTLNIYDNSPIFELNKGRRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVSQR 250

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++    +
Sbjct: 251 TKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVTLAVFLR 307

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               ++   +  +F +L +       F  + +   +N  +I   Y  L    +I L +  
Sbjct: 308 YPYSKKTTFMPVLFSALIVLLVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLFV 366

Query: 356 KKY 358
           +K 
Sbjct: 367 RKR 369


>gi|302342716|ref|YP_003807245.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
 gi|301639329|gb|ADK84651.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
          Length = 397

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 133/364 (36%), Gaps = 15/364 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+LR +   F +S     F+  + +I++  +LV S    L+++ ++  Y +P   
Sbjct: 5   RIIHRYLLREMIGPFFISLGVFTFMLLIAKIMELTDLVVSRGVGLDVVGRLLLYTLPYFF 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        M+ + E++ +   G S    + PV  LAI   +         
Sbjct: 65  VFTIPMATLLGVLLAFLRMSGDMEVVALKAAGVSPYAFLPPVAVLAICAWLVTSALAFWG 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + L  +   A T   L+E +F      + I IS+      +  +FIVD R+ 
Sbjct: 125 LPWGNHRFENLVFQVAKAQTDLALKERVFMDTFPGMVIYISRLPGQGQMTDLFIVDEREK 184

Query: 182 QTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             H    A+ G I   + DR  + L DG +H      +      F +Y +  +++  S  
Sbjct: 185 GRHHTIVAKRGKIFPANNDRLILRLYDGTIHSVGQNLRSAQTAAFVTYDIAVDASTLSAA 244

Query: 239 VLK----ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +      +     LL      P    +       E HK+ +     ++  LI +    
Sbjct: 245 HQRTTKHEKEMYFGELLAEMDKLPADSMQHY-LIEMEMHKKFSVPFACLVMALIGLPLGM 303

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
                 +  +   + I+L +  G +   S       +   Y PI  ++     + ++ + 
Sbjct: 304 HS----RGGRSWGVAIALVVFLGYYLMLS-AAWSFGKTGDYPPIVGMWAPNLLLGALAVE 358

Query: 353 MIKK 356
           + ++
Sbjct: 359 LFRR 362


>gi|253702060|ref|YP_003023249.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776910|gb|ACT19491.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 391

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 139/366 (37%), Gaps = 17/366 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+   YI + I   FL+  +   F+  + + L+   +V       + + ++  YL+P   
Sbjct: 7   KTLYAYIFKEIPTPFLVGMVTFTFVLLMGRFLKLAEMVVEKGVPFSDVARMVAYLLPPFW 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +        ++ ++E+  + + G S   L+ P L  A   ++         
Sbjct: 67  LFTIPMALLLAMLLAFGRLSGDSEITAMKSCGISLYGLLPPPLLFAACATLACLFVTVYA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P   S  K+L  +   +     ++E +F     D+ +     +    T+ G+ + D RD
Sbjct: 127 VPWGNSGFKKLVVEIAQSSAGISIKEKIFNNAFPDMVVYTQSLDTKAQTMGGVIVHDERD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +T    +A +G++  D ++      L +G +HR         +++F+ Y L+   A   
Sbjct: 187 PRTPTTIFASTGALVSDPKSNSMEFQLRNGSIHRAE-EKGGYRMVQFQEYNLRVSLAEGG 245

Query: 237 TI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K ++  L  LL+P       + + + +   E+H RL       +F L++I     
Sbjct: 246 NKSPRKVSEMTLDELLHPPK---GAQQKEILSRGLEYHGRLALPFSCFVFTLLAI---PL 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
               R+  K     +S+ +    +   S      E+     P+L  +   L  + +   L
Sbjct: 300 GIQNRRSGKASGFSLSIGVILLYYVALSAFKTLGER-GMLPPLLAGWSPNLIFLMAGIYL 358

Query: 353 MIKKKY 358
             K  +
Sbjct: 359 FKKTAH 364


>gi|118580061|ref|YP_901311.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118502771|gb|ABK99253.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 382

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 145/360 (40%), Gaps = 10/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++  L I+R I   FL+       +  + ++++   +V S   +L  + ++   L+P+ L
Sbjct: 3   RTLYLSIIREITSLFLLGLGIFTLVLLMGRMIKLTEMVISRGVALADMGRMIICLMPSFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P  F +        ++ ++E+ ++   G S + ++ PVL  A++ +     +  + 
Sbjct: 63  VYTIPMAFLLAVLLTFGRLSADSEITVMKACGISLVQIMPPVLLCALVAATLGLYAGVVG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
            P        +S         S + E +F+     + +    Y+   +TL G+ I D R+
Sbjct: 123 VPWGNRAFAAMSFDMLSQNVSSTIREKVFWDDIPGIVLYTDHYDEERHTLSGVVINDERN 182

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  +A SG +          +IL  G +H +     +  ++ F  Y +   +   +
Sbjct: 183 ASRPLTIFASSGLVAGGANPRDVRLILRSGSIHAQGRG-GEYRLIHFAEYVMNIAAPGGT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +A  +     L+ +  +P+ +P+L +   +E H R       ++F ++++      
Sbjct: 242 DTVTRAPREMTVTELHRSIASPSTQPKLRKKMATEMHSRFALPFASLVFAVLAV---PLG 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIK 355
              R+  +     IS+ +    +   S +    E+  +  P+ L++       +  ++++
Sbjct: 299 LQNRRSARSFGFAISIGVLLAYYILLSLLGTMAEKGSFPAPLALWIPNMVFLVLGWVLLR 358


>gi|77919518|ref|YP_357333.1| hypothetical protein Pcar_1922 [Pelobacter carbinolicus DSM 2380]
 gi|77545601|gb|ABA89163.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 418

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 138/367 (37%), Gaps = 15/367 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR      L+       +  + +IL  + LV +    L  +L +  YL+PT L 
Sbjct: 32  RIQRYLLRETLVPMLLGLAVFTLVLLLGRILNLVELVINKGVPLVDVLLLLAYLLPTFLV 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        M+ + E+L +   G     L  P++ L +L+S+    +   I+
Sbjct: 92  LTLPLSFLLGVMAGFGRMSADREILALKACGVGLRQLTAPIVGLGLLVSLATAATTIAIK 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
           P      ++       +     ++  +F    + + +  +  +  +  +QG+FI D RD 
Sbjct: 152 PASEDLFREKLFHIASSRANIGIQAQIFNDEFEGIILYANDVDERSGRMQGVFISDERDD 211

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSS 236
               I  A  G I  +++     + L +G +HR+   +     +++F  Y L  +   +S
Sbjct: 212 TLSSIILANEGRIFSNQENLTLTLHLENGTIHRQRRETGSGFQVIEFTRYDLNLDLGQTS 271

Query: 237 TIVLKAND----QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
               +         L  L      +    P       +EFH RL   + P++F L+ +  
Sbjct: 272 MSADQPRKNKKTMTLGELYQAIRPDAATPPSKKRELLAEFHWRLAVPVIPLLFALLGVPL 331

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
             +     +  +       L +    +   S     +        I++    +F ++SI 
Sbjct: 332 GIQPV---RSGRGSGFAAGLLVFLAYYVLLSLAGTLVVDAGLPGLIMWGPNSIFLLASIV 388

Query: 351 LLMIKKK 357
           +L    K
Sbjct: 389 VLRAAAK 395


>gi|95928709|ref|ZP_01311455.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
 gi|95135054|gb|EAT16707.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
          Length = 395

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 151/366 (41%), Gaps = 18/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R I   FL+S +   F+  + ++L+ I +V     +++ +L +   L+P+   
Sbjct: 5   RLQTYISREIIAPFLLSLVLFTFVLLLSRLLKLIEMVVDKGVAVSEILHLFACLLPSFFV 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        ++ ++E++ +   G S   L +PVL +A+L+  F      + E
Sbjct: 65  ITVPLSFLLAVMLAFGRLSADSEIVAMKAAGFSLYRLSQPVLIIALLVCGFTAYLTLVAE 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT 181
           P  R  +KQ       +     L+  +F    D L +  +  +   NT+ G+FI D R  
Sbjct: 125 PAGRVKLKQRLIDIAYSKAAVALQPQIFNEEFDGLMMYANDVDNQTNTMTGVFISDERMG 184

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHR--KSPISKDISIMKFKSYT----LQTE 231
            T  I  AQ G I  DR      + L DG +HR       +   ++ F+SY     L T 
Sbjct: 185 NTPSIIVAQRGEIRSDRTNGSLLMHLRDGSIHRPVIRSGKRSYQVVDFQSYDVNLSLNTA 244

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                ++ LK  +     L+  +P       E     R E  +RL     P+IF L+++ 
Sbjct: 245 DKEEKSLNLKPKEMTTKALMQADPE---LSEEKQRERRVELMERLVLPFSPLIFALLAVP 301

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIF 350
              +     +  K     ++L I    +   S     +++N +  +  L+        + 
Sbjct: 302 LGIR---SHRSPKGGGFSVALFIFLLYYLCLSVAKTMVQENNWPLLGSLWGPSVAFIVVG 358

Query: 351 LLMIKK 356
           +L++ +
Sbjct: 359 ILLLIR 364


>gi|67459766|ref|YP_247390.1| permease [Rickettsia felis URRWXCal2]
 gi|67005299|gb|AAY62225.1| Predicted permeases [Rickettsia felis URRWXCal2]
          Length = 369

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 157/365 (43%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 10  MLLYRKYFIKNILPLLIVVTFSVTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + + L  P L+ A+++ +  +   + 
Sbjct: 69  LFILLPVITVIAVIYIYNNLKVERQLIILQASGVNNVQLALPALYAALIVMLLAYYISST 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  D+ + I K +  N + G+ I D+R+
Sbjct: 129 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRN 188

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--- 235
                + +A SG+++   +     LN G       ++ +++ + F S  ++ ++ N    
Sbjct: 189 ADNPSVVFAGSGTLNIYDNNPIFELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVS 247

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P P++     ++     +E H+R+   L+  +   +++   
Sbjct: 248 QRTKHNKEANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFLALAVF 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 305 LRYPYSKKTTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYSNLIIALTIGLYL 363

Query: 354 IKKKY 358
             +K 
Sbjct: 364 FVRKR 368


>gi|85859086|ref|YP_461288.1| permease [Syntrophus aciditrophicus SB]
 gi|85722177|gb|ABC77120.1| permease [Syntrophus aciditrophicus SB]
          Length = 394

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 146/366 (39%), Gaps = 10/366 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+++ I + F +    + F+  + +ILQ ++L+ +    L+ + ++  +L+P+ 
Sbjct: 1   MKIINRYLVKEILQPFGIVLFVLTFVLLMGKILQLMDLMINKGVGLSHIARLILFLLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  ++ + EL ++  +G S   L  P+L +A++  +    +   
Sbjct: 61  LVFTLPISLLVSVLIALGRLSSDNELTVLKASGISLYRLTPPILMIALVSFMLTAATTLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P   +  K L            ++E +F    + + +   K   +   ++G+ + D R
Sbjct: 121 LVPYSNTATKALIFNVARNKASIGIKEKVFNADFNGVVLYAEKVPSDGRFMEGVLVSDQR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    A+   +  D +     + L DG  +  +   K    M FK+Y +  +  +S
Sbjct: 181 TADEPGTIIAKKAFLVADPKSMTVTLRLEDGSTYFVAENMKIFRKMDFKTYDINLDLQSS 240

Query: 236 STIVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S+   K   + L  +    L  N  +     ++      E +++ +  L  ++F +++I 
Sbjct: 241 SSDAEKMRTKALKEMTPRELIQNLKSGRLDDKIYRKTAMELYEKFSIPLSCLVFSILAIP 300

Query: 292 AADKRAL-VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
              K      + +      +++ + + +  G   ++     +P+    +   LF I+   
Sbjct: 301 LGVKPHHRSVKSRGFTIGLMTVLLYYLLQLGCEGMVTVGRLSPFLGSWIPNILFTIAGTV 360

Query: 351 LLMIKK 356
           L  +  
Sbjct: 361 LYFMAA 366


>gi|148261611|ref|YP_001235738.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|146403292|gb|ABQ31819.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
          Length = 386

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 7/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ +
Sbjct: 20  TRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFV 79

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    V   +  + EL ++  +G S   + +P L LA+L  +  +     +
Sbjct: 80  AVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWL 139

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R  
Sbjct: 140 VPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQK 199

Query: 182 QTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  A+SG +    D   ++L DG   +  P +  ++I+ F+   +        T  
Sbjct: 200 GEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVTRK 259

Query: 240 L--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           L  K ++  ++ L +      +  P +   +R E  +R+      + + +I++++  +  
Sbjct: 260 LAPKTSEATMTQLFHAGAA--HVPPPVQRRWREEAWRRIASPFAVLSYAVIALLSVLRSP 317

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             RQ      +     I  G+        +   +    IP+++      + +
Sbjct: 318 FRRQGGAAALVAAVF-IVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 368


>gi|326405101|ref|YP_004285183.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
 gi|325051963|dbj|BAJ82301.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
          Length = 374

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 141/352 (40%), Gaps = 7/352 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R +     +S L +V + W+ Q L+ I L+     S  + L ++G L+P+ +
Sbjct: 8   TRLDRYVFRQLLIGLAVSTLGLVALVWLTQSLRFIQLIIQHGLSPVVFLHLTGLLVPSFV 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    V   +  + EL ++  +G S   + +P L LA+L  +  +     +
Sbjct: 68  AVILPITCFIVILFVYARLAADRELTVMRASGMSDAAIARPALALAMLTMLACWGLNVWL 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +      +  +  +    LE  +F  +   + + + + + +  L GI I D+R  
Sbjct: 128 VPSTLARFTHFESIIRNQVAAFLLEPGVFTPIPGHITVYVQRRDHDQVLHGIVIQDARQK 187

Query: 182 QTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  A+SG +    D   ++L DG   +  P +  ++I+ F+   +        T  
Sbjct: 188 GEPATILARSGRLIDGPDGPEVLLLDGSREQVDPKTGRLNILSFRRNLISLAKPTGVTRK 247

Query: 240 L--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           L  K ++  ++ L +      +  P +   +R E  +R+      + + +I++++  +  
Sbjct: 248 LAPKTSEATMTQLFHAGAA--HVPPPVQRRWREEAWRRIASPFAVLSYAVIALLSVLRSP 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             RQ      +     I  G+        +   +    IP+++      + +
Sbjct: 306 FRRQGGAAALVAAVF-IVMGLVALELGTENLAARQNGLIPLIFAVTLGPALV 356


>gi|114799726|ref|YP_760969.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114739900|gb|ABI78025.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 380

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 150/365 (41%), Gaps = 8/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   +L++LR + ++ L+    +V +A + Q L R +++  + +S      I     P V
Sbjct: 1   MTKIQLHLLRQVLQAVLIIVGSLVMVALLAQGLSRTDVILENRQSAITYFYIVMLGSPQV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +     L  +++++E+++    G +R  +  PVL LA++  +        
Sbjct: 61  IALLLPLALFVAGVWSLNRIHKDSEIVVAQAAGMTRWQVASPVLRLAMVCLVVHLGVNLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  +  +++  A+A+  L  +      F    + L            L+G+ I D  D
Sbjct: 121 VQPMSQRAMREAVAEARADLAAALFRAGQFTSNGERLTFYARD-QVGGELRGVLISDMTD 179

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +      A+S ++     +  ++L D    +    ++ +S+++F  Y           S
Sbjct: 180 PEFPMDILARSAALVSVDGQPTLLLRDALSQQLD-ENQQLSVLEFDQYMFDLSDFMKEDS 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +VLKA+D+ L  L+  +  N  +  +  +++ +E + RLT  +  ++  L++I A    
Sbjct: 239 ELVLKASDKFLHELIFLDRKN-YFENKEADSFLAEANARLTSPMLNIVMALLAIFAVLGG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ         +    F +    + +      +P     L++       I   +   
Sbjct: 298 DFSRQGYAKRIGLATGGAIFVLVLHLA-LQSAAADDPALNIALWVVPILAGIILGWIYFG 356

Query: 357 KYTKI 361
           +  +I
Sbjct: 357 RGARI 361


>gi|292572537|gb|ADE30452.1| Putative permease [Rickettsia prowazekii Rp22]
          Length = 377

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 154/365 (42%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 18  MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPTL 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +  +   + 
Sbjct: 77  LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 137 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRN 196

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-----SA 233
                + +A SG+++   +     LN G        + +++ + F S  ++ +     ++
Sbjct: 197 ADNPSVVFAGSGTLNIYGNNPIFELNKGLRQEYD-ANGNLTQLTFDSLMIKLQNNSSLTS 255

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++   
Sbjct: 256 QRTQNNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVF 312

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++ F     F  + +   +N  +I   Y  L    +I L +
Sbjct: 313 LRYPYSKKTTFMPVLFSALTVLFVTAIHF-ILQNFASKNLDFIFACYFNLLVALTIGLYL 371

Query: 354 IKKKY 358
           +  K 
Sbjct: 372 LVHKR 376


>gi|157829182|ref|YP_001495424.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801663|gb|ABV76916.1| hypothetical protein A1G_07385 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 338

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 150/343 (43%), Gaps = 13/343 (3%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +  I W+ QIL+ + L       +     +   ++PT+L ++ P    +    +  ++  
Sbjct: 1   MTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKV 59

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     
Sbjct: 60  ERQLIILQASGVNNVQLALPALYVALIVMLLAYYISSTILPLSHINLKSRLNFIKNNYIS 119

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID--LDRQA 200
           S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG+++   +   
Sbjct: 120 SMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPI 179

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS-----STIVLKANDQNLSFLLNPNP 255
             LN G       ++ +++ + F S  ++ ++ N      +    +AN+  +S LL P P
Sbjct: 180 FELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLAP-P 237

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           ++     ++     +E H+R+   L+  +   +++    +    ++   +  +F +L++ 
Sbjct: 238 HDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVFLRYPYSKKTTFMPVLFSALTVL 295

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                 F  + +   +N  +I   Y  L    +I L +  +K 
Sbjct: 296 LVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLFVRKR 337


>gi|15604701|ref|NP_221219.1| hypothetical protein RP871 [Rickettsia prowazekii str. Madrid E]
 gi|6831726|sp|Q9ZC95|Y871_RICPR RecName: Full=Uncharacterized protein RP871
 gi|3861396|emb|CAA15295.1| unknown [Rickettsia prowazekii]
          Length = 360

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 154/365 (42%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++PT+
Sbjct: 1   MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPTL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +  +   + 
Sbjct: 60  LFILLPIITVIAVLYIYNNLKVERQLIILQTSGVNNIQLALPALYVALTIMLLAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K      +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 120 ILPLSHINLKSRLNFIKNNYISSMIEEKTFNKITKNITVFIDKKLTGNIMNGIIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-----SA 233
                + +A SG+++   +     LN G        + +++ + F S  ++ +     ++
Sbjct: 180 ADNPSVVFAGSGTLNIYGNNPIFELNKGLRQEYD-ANGNLTQLTFDSLMIKLQNNSSLTS 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++   
Sbjct: 239 QRTQNNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   +  +F +L++ F     F  + +   +N  +I   Y  L    +I L +
Sbjct: 296 LRYPYSKKTTFMPVLFSALTVLFVTAIHF-ILQNFASKNLDFIFACYFNLLVALTIGLYL 354

Query: 354 IKKKY 358
           +  K 
Sbjct: 355 LVHKR 359


>gi|34581065|ref|ZP_00142545.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262450|gb|EAA25954.1| unknown [Rickettsia sibirica 246]
          Length = 338

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 150/343 (43%), Gaps = 13/343 (3%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           +  I W+ QIL+ + L       +     +   ++PT+L ++ P    +    +  ++  
Sbjct: 1   MTSIVWITQILKLLYLF-DKGIKVMDFFSLIVLVLPTLLFILLPVIMVITVIYIYNNLKV 59

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
             +L+I+  +G + + L  P L++A+++ +  +   + I P     +K      +     
Sbjct: 60  ERQLIILQTSGVNNVQLALPALYVALIVMLLAYYISSNILPLSHINLKSRLNFIKNNYIS 119

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSID--LDRQA 200
           S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +A SG+++   +   
Sbjct: 120 SMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVFAGSGTLNIYDNSPI 179

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS-----STIVLKANDQNLSFLLNPNP 255
             LN G       ++ +++ + F S  ++ ++ N      +    +AN+  +S LL P P
Sbjct: 180 FELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKEANEYYISELLAP-P 237

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           ++     ++     +E H+R+   L+  +   +++    +    ++   +  +F +L++ 
Sbjct: 238 HDLAITKKI--KLIAEAHQRIIWPLYNFVLPFVALAVFLRYPYRKKTTFMPVLFSALTVL 295

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                 F  + +   +N  +I   Y  L    +I L +  +K 
Sbjct: 296 LVTSIHF-ILQNFASKNLDFIFACYFNLVIALTIGLYLFVRKR 337


>gi|51474040|ref|YP_067797.1| hypothetical protein RT0862 [Rickettsia typhi str. Wilmington]
 gi|51460352|gb|AAU04315.1| conserved hypothetical protein (possible transmembrane protein)
           [Rickettsia typhi str. Wilmington]
          Length = 360

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 156/365 (42%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +  Y ++ I    ++    +  I W+ QIL+ + L       +     +   ++P +
Sbjct: 1   MLLYRKYFIKNILPLLIIVTFSVTSIVWITQILKLLYLF-DKGIKVIDFFNLVVLVLPIL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +    +  ++    +L+I+  +G + I L  P L++A+ + +F +   + 
Sbjct: 60  LFILLPVITVISVLYIYNNLKVERQLIILQASGVNNIQLALPALYVALTVMLFAYYISST 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K   +  +     S +EE  F ++  ++ + I K    N + GI I D+R+
Sbjct: 120 ILPLSHINLKSRLSFIKNNYISSMIEEKTFNKITKNITVFIDKKLAGNIMNGIIIFDNRN 179

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-----SA 233
                I +A SG+++   +     LN G       ++ +++ + F S  ++ +     ++
Sbjct: 180 ADKPSIVFAGSGTLNIHGNNPIFELNKGLRQEYD-VNGNLTQLTFDSLMIKLQNDSSLAS 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    +AN+  +S LL P+ +    +        +E H+R+   L+  +   +++   
Sbjct: 239 QRTQHNKEANEYYISELLTPSHDLVITKKI---KLIAEAHQRIIWPLYNFVLPCLALAVF 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +    ++   I  +F +L++       F  + +   +N  +I   Y  L    +I L +
Sbjct: 296 LRYPYSKKTTFIPVLFSALTVLLVTAIHF-ILQNFASKNLDFIFACYFNLLVALTIGLYL 354

Query: 354 IKKKY 358
           + +K 
Sbjct: 355 LVRKR 359


>gi|158521442|ref|YP_001529312.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510268|gb|ABW67235.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 391

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 140/361 (38%), Gaps = 16/361 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI+  +   F +S      +    Q+L   N + +    L +++ +  Y  P  L  
Sbjct: 6   IDRYIMAELVPVFGVSLAVFTLVFLTHQLLDITNFIVNYGTGLGVVMLMLVYSTPYFLVY 65

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           V P    M        M+ + E++ + ++G S   L  PV+   +   +   +      P
Sbjct: 66  VIPISTMMAVLLTFLRMSGDNEIVALKSSGVSLYRLFYPVMGFCVAACLLTLLMTLWGLP 125

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQ 182
           + +   KQL+     +     + +  F  L + + + + +++     L  +FI D R   
Sbjct: 126 RGKVAFKQLAYTVVTSNPNLGIVDREFNTLFNGITLYVGQFDKKQRVLSDVFIEDQRSAG 185

Query: 183 THKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN---- 234
                 A SG++D+D       + L DG +++     +   +++F++Y +  +       
Sbjct: 186 KPVTICAPSGTLDVDMVGQVVRLSLADGRMYQVDLRDRSSRVIRFETYDIHLDLERAGQV 245

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +ST      + +L+ L +              + R E HK+ +     V+   + ++A  
Sbjct: 246 ASTAARSEKEMSLAELFDH-IQKAGAAGLPRGSARMELHKKFSIPFACVV---LGLLAVP 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
                R RK    I ++L   F +++        + ++ +  P L ++L    +  + L 
Sbjct: 302 LGVQARGRKTSSGIGLALVF-FLLYYLVLSGGEILGESGFLHPALAMWLPDMVMGGLGLF 360

Query: 353 M 353
           +
Sbjct: 361 L 361


>gi|258591111|emb|CBE67406.1| putative Permease YjgP/YjgQ family protein [NC10 bacterium 'Dutch
           sediment']
          Length = 426

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 145/372 (38%), Gaps = 23/372 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++LR +  SF +      F+  + Q+++ ++L+ +    + ++L++  Y++P    
Sbjct: 32  LIDRHLLREMAASFALGLGTFTFVLLMDQMMRLMDLIINKGAPVGVVLRLISYILPFSFT 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +        ++   E +++  +G S   L+ P +   ++ +        +++
Sbjct: 92  VTIPMSVLLAVLATYGRVSSEGEAIVLKTSGLSLYRLMAPGVLFGVVATFATLWISTLVQ 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
           P      K L+ +       + LE  +F      L I + +    + TL GI ++D R+ 
Sbjct: 152 PSSTKAFKTLTHQLYHTHVLTALENGIFNTEYPGLAIYVDRSEKTDGTLHGILVIDQRNQ 211

Query: 182 QTHKIYYAQSGSI------DLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTES-- 232
              ++  AQ G +            + L+ G +   S    D    + F++Y LQ  +  
Sbjct: 212 ADQRLIIAQEGKLLNKDDETEAPIGLQLSRGTLQISSRDHPDRYRNLDFETYDLQILTGG 271

Query: 233 --ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             A +   V ++ + N+  L        N         + E HK+ +  +  +I  +I  
Sbjct: 272 TVAETVARVRQSKEMNIGEL-RTEIARLNKDGGKAWPLQVELHKKFSLPIACLILSMIG- 329

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVF-----WGFSYIIHKIEQNPYYIPILYLFLFC 345
                   +R +K    + ++LS++F VF          +  +   +P            
Sbjct: 330 ----APLAMRIKKAGRGVSLALSVAFAVFYYILLATGESLGSRGRIDPALGVWFPNLTLG 385

Query: 346 ISSIFLLMIKKK 357
           + +I L++ + +
Sbjct: 386 MIAIGLVLTEDR 397


>gi|320353217|ref|YP_004194556.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121719|gb|ADW17265.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
          Length = 508

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 136/370 (36%), Gaps = 18/370 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI   +   F  S L +  + ++++++  + +V +    L   +++  Y+ P +L 
Sbjct: 34  LLYSYIANELLAPFFASFLILYCVFFLVRLIPLLEVVLALRIGLADFIRLFSYIFPRMLL 93

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P           T +  + E+L +   G S   ++ PV+ +A  ++         + 
Sbjct: 94  YIIPMASMAGVIVGFTRLTNDREILALKACGVSLKQMLPPVILIAAAIATLTGFFSIRLI 153

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      KQL  +         L+   F     D+ + + + +      G+++ D R   
Sbjct: 154 PAGALGFKQLMFELAKEKIDKGLKAREFTEALGDIVVYVDEIDDQQRWHGVYVSDMRGRT 213

Query: 183 THKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              I  A+SG ++ + +     I+LNDG +H  +    D  +++F  Y LQ      + I
Sbjct: 214 QPLITVAKSGHMEAEMERMTVTIVLNDGTLH--NNEGTDNQVVRFGRYQLQISLRPPTQI 271

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIFGLISIVAA 293
             +         ++          +   +     + SE+H RL     PV   ++SI+  
Sbjct: 272 GKEDVTSQTRGAMSQQQLLRAAAKQKPNSKLHRIFLSEYHHRLA---LPVGCFILSILGL 328

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYL---FLFCISSI 349
                    ++   I + L +    +  F+   +   E     +  ++L       ++ +
Sbjct: 329 PLGLQAAPGRRAVGIPLGLVVFVLYYIAFTTARVMSEEGTLPLVLGMWLPNILFSVLTVV 388

Query: 350 FLLMIKKKYT 359
               + ++  
Sbjct: 389 IFWRVNRERP 398


>gi|301060831|ref|ZP_07201645.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300445080|gb|EFK09031.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 383

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 147/368 (39%), Gaps = 17/368 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   YI R I  +FL S    +FI    ++L    L+ +    L+ +  +  +LIP +L 
Sbjct: 2   TLYRYIFREIWPTFLASLFVFIFIMMAARMLSITELIVTRGVHLSQVAGMVLFLIPDILT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    M        ++ ++E++ + ++G S   ++ PV+F ++   +          
Sbjct: 62  FALPAVTLMSVVVAFLRLSADSEIIAMKSSGISLYQMLPPVIFFSLAACLACVAISTFAA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT 181
           P    + K L  K         ++E +F    ++L   ++ ++     L+ +F+VD RD 
Sbjct: 122 PWGNRSFKDLLFKIAETKADLGIKERIFCEPFENLVFYVNSFSREERMLKDVFVVDRRDQ 181

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SA 233
           +      +    I          ++   G +       +    +KF +Y L        A
Sbjct: 182 EMTNTIVSDEAQIIPRPAERTITLLFLKGTIFMVEKNFEGSRTIKFNTYALNIGLKDVLA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           + ++     ++ +++ L++   + PN   E     R E  ++L+  L       + I+  
Sbjct: 242 DLASRKKAPHELSVNQLISKLKSTPNTDKEYSRIMR-ELLEKLSIPL---AVFFMGIIGV 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIF 350
              A +R R +   + +SL + F +++ F  II  I       P   ++   LF I S+ 
Sbjct: 298 PLGAQIRGRGRSAGVGVSLVV-FALYYLFLMIIRSIASTGALSPAFAVWIPDLFLIVSVV 356

Query: 351 LLMIKKKY 358
            L+ +  +
Sbjct: 357 YLLRRASH 364


>gi|297569343|ref|YP_003690687.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925258|gb|ADH86068.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 398

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 124/351 (35%), Gaps = 9/351 (2%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  I ++ +++  ++ + +    L    +I  Y+ P +L    P    
Sbjct: 15  EMLAPFFAALLVINAILFLGRLIPLLDEIFALGLGLGDFARICLYMSPRLLLFSLPMACM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T MN + E++ +  +G     ++ PVL L  + ++   ++  ++ PK      
Sbjct: 75  MGVIIAFTRMNGDYEIMALKASGIGLYRMLPPVLLLGAVTALLTLVTATVLIPKSTIATN 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
           QL            +  N F      + + + +  P+N  +G+++ D RD        A 
Sbjct: 135 QLFWHLAKTKVEQGVRPNTFSEGLPQVVLYVEEVTPDNAWRGVYLSDLRDPDHPVTVMAP 194

Query: 191 SGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            G +  D       + L+DG +HR   + +    + F  Y L+      +    +     
Sbjct: 195 DGQLQADTAGSRIMLTLHDGTMHR--AVQEKTQTIHFGRYHLEIPLTPPAAFADRTGRHG 252

Query: 247 LSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           ++   L              +TY  E+H+RL       I  ++ I          Q   +
Sbjct: 253 MTQDELRQTAAKLGPEHSRYKTYLIEYHQRLVLPAGAFILAMLGITLTLLSRTPHQALGV 312

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +S    + +      +    +      P ++L     +   + + +K
Sbjct: 313 PLGLLSFIAYYVLLTAAKTLAEGGQ--LPLGPAMWLPNLVFAIFTVYLTRK 361


>gi|304410148|ref|ZP_07391767.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302141|ref|ZP_07581899.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351557|gb|EFM15956.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914179|gb|EFN44600.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 370

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ +V 
Sbjct: 5   KYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVILVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ-- 182
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPDDE 184

Query: 183 --THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K         L+  P +   + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRK---------LSALPVDELVKIEGAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            VRQ K    +F ++ +  G F G      K  Q+   IP LYL ++ I    LLM
Sbjct: 293 NVRQGK-FAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP-LYLGMWWIHISALLM 344


>gi|126175309|ref|YP_001051458.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217972440|ref|YP_002357191.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998514|gb|ABN62589.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|217497575|gb|ACK45768.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 370

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 144/356 (40%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ +V 
Sbjct: 5   KYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVILVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++++   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ-- 182
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPDDE 184

Query: 183 --THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K         L+  P +   + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRK---------LSALPVDELVKIEGAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            VRQ K    +F ++ +  G F G      K  Q+   IP LYL ++ I    LLM
Sbjct: 293 NVRQGK-FAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP-LYLGMWWIHISALLM 344


>gi|160876367|ref|YP_001555683.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861889|gb|ABX50423.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268557|gb|ADT95410.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 370

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ +V 
Sbjct: 5   KYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVILVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ-- 182
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPDDE 184

Query: 183 --THKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D    Q + LNDG  ++ SP +KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K         L+  P +   + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRK---------LSALPVDELVKVEGAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            VRQ K    +F ++ +  G F G      K  Q+   IP LYL ++ I    LLM
Sbjct: 293 NVRQGK-FAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP-LYLGMWWIHISALLM 344


>gi|189425645|ref|YP_001952822.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421904|gb|ACD96302.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 379

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 140/347 (40%), Gaps = 12/347 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y++R I   F +       +  + ++++ + +V ++   L  +L++   L+P+ L
Sbjct: 4   RIINRYLMREIVGIFALGLTIFTLVLLMGRMVKLMEMVVANGVPLAEVLRLILLLLPSFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +        ++ + E+ ++   G S  TL+ PVL  A   ++       + 
Sbjct: 64  VLTIPMAFLLAVLLAFGRLSNDNEITVLKACGLSLGTLLPPVLLTAAAAALLTLFISVVA 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P   +  KQ++         S + E +F      + + + +Y+    T+Q + I DSRD
Sbjct: 124 VPWGNTGFKQMTMDVARKYAASAIRERIFRDDLPGIVLYVDQYDEARRTMQRVMIQDSRD 183

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +     +A+SG +  D       I+L +G +H  +    D  ++ F  Y L  ES  S+
Sbjct: 184 PERPLTIFAKSGLVSSDEVNGVLRILLKNGSIH--TQHKNDYRLVSFGEYLLTAESGRST 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V    D  +  L      +P   P+      +E H R        +F ++++      
Sbjct: 242 PPVRTELDLGIGEL-QRGSRSPQLAPQARLKMATELHSRFAFPCATFVFAILAL---PLG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              R+  K     IS+ I    +   S++    E+     P L ++L
Sbjct: 298 LSNRRSGKGSGFTISILILLVYYVLLSFLRTLAEK-GGIPPALAVWL 343


>gi|153001631|ref|YP_001367312.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|151366249|gb|ABS09249.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
          Length = 370

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 24/353 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ +V 
Sbjct: 5   KYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLVILVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++++   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYSENEMVVLHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ-- 182
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPDDE 184

Query: 183 --THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D      + LNDG  ++ SP +KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKGGRVQEDSTGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K         L+  P +   + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRK---------LSALPVDELVKIEGAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            VRQ K    +F ++ +  G F G      K  Q+   IP LYL ++ I    
Sbjct: 293 NVRQGK-FAKMFPAVLLYLGYF-GLMVAGRKALQDG-IIP-LYLGMWWIHISA 341


>gi|330813916|ref|YP_004358155.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487011|gb|AEA81416.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 358

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 150/359 (41%), Gaps = 17/359 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y +  I RS+      + F+ W+ Q  + + L++    S+++ +    Y +P ++
Sbjct: 4   NKLNNYFIAEILRSYAFVLATLSFLIWIAQSARFLYLITDMGLSMSVYVPYILYQLPKIV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +    F +     +     N E+ I   +G S+ T++  +L ++++ +   F     +
Sbjct: 64  SQMMLISFLISLFISIIKFQNNKEMEIYWLSGVSKKTIVWTILKISLVPTFVAFFLYIYL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + + A ++     + +++N F     +L + + + +    L+ +++      
Sbjct: 124 APMTGLISRNILANSEFTFVNALVKKNNFNSPFRNLTVYVGENDNRGNLEKVYLF----- 178

Query: 182 QTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSST 237
           + +K   A+ G +    ++  + L DG +H+K+  +  I I+KF+   Y      +N +T
Sbjct: 179 ENNKTIIAKQGKVLNVDNKNYLQLIDGFIHQKNK-NGKIQIIKFEETLYDFTKYKSNLTT 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K  +++L +L N   NN   +   +     E HKR+ + LF  I  L+         
Sbjct: 238 YP-KLQERSLLWLFNELKNNRKEKNNTI----FEIHKRIFKPLFIPIIALLCCFILYGNN 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 K+     SLS+ F +F  F  +I     N ++   LY F  C+  I    + K
Sbjct: 293 EKFNLVKLRFSIFSLSVLFIIF--FEILISLSSSNIFFQYFLYSFPMCVGIIIYFFLHK 349


>gi|218778207|ref|YP_002429525.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759591|gb|ACL02057.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 398

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 119/359 (33%), Gaps = 11/359 (3%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+L  +   F ++ L    I  + ++LQ  + V +    L  ++ +  Y +P  L  V 
Sbjct: 9   KYMLGEMLPPFGVTLLVFALIFLMTRMLQLTDYVVNFRVGLGHVMMLLMYSMPFFLIFVI 68

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    M        M+ + E+  +   G S  +L+ PVL      ++       I  P  
Sbjct: 69  PMSTMMAVLLTFLRMSSDNEITALKAAGWSLYSLLPPVLAFCTAAALLTASMSFIGLPWG 128

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTH 184
           R   K+L            L+E  F R   ++ + +   +  + TL  +FI D RD Q  
Sbjct: 129 RMAAKELLIDVARQNVEIGLKERSFERTFKNVVLYVGSVDVESRTLHHVFIEDRRDKQLS 188

Query: 185 KIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANSST 237
               A +G I      D   + LNDG + R       +  + F SY        +  +  
Sbjct: 189 STIMASTGRIIPSDGDDIWQLRLNDGVIVRADRKKSSMFTVNFDSYDFNLNLGTALGARD 248

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +     LL                   E HK+ +     ++ GL ++       
Sbjct: 249 GEKDEEEMYFKELLTFVKRYNKKDDRYYLALL-EVHKKFSIPFSCIVLGLAAVPLGIVSR 307

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             R+   +        + + +           +  P     +++    I ++    + +
Sbjct: 308 SARRSFGVALGLGLFLLYYLLLSAGWVFGEAGKYPPMIG--MWVPNLVIGAMGGFSLVR 364


>gi|114768924|ref|ZP_01446550.1| Predicted permease [alpha proteobacterium HTCC2255]
 gi|114549841|gb|EAU52722.1| Predicted permease [alpha proteobacterium HTCC2255]
          Length = 407

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 135/357 (37%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ + +   F   C  I  I  + Q L  I++V+ + +   I+ ++S  ++P VL
Sbjct: 34  TKLDRYLFKQLIGPFAFFCFIISGILLLNQALGIIDIVTENGQPAYIVFELSFLILPKVL 93

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                    + +  ++  +    ELL++ + G S I L KP L   IL++  LF+  + +
Sbjct: 94  ITAISISGFIASVLIINRLYNEEELLVMMSIGRSFIELSKPFLLFGILIASLLFLVVHNL 153

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S   +   + +       ++ + F    +           N  L  I I +    
Sbjct: 154 NPYAHSKFIEAQERIKKEYVTQIIKPDQFISYQNKYTFFFGDKGNNGELSEILIEEQITP 213

Query: 182 QTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI- 238
            T   + A++G +  + D  A++L +G     + +S   S+++F +           TI 
Sbjct: 214 DTTLTHIAKNGQVIANKDSNALLLRNGSTQSYNKVSGTFSLLQFDTLVFDLNQLRKDTIS 273

Query: 239 -VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  N + L        ++ P L       +H R  + L  ++F L+ ++      
Sbjct: 274 SESSLSSLNSTMLKKKISALESFDPRLGRAVSL-YHDRNAKVLLAMLFPLLGMLGLLLGG 332

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R    I  I   + I   +          + +NP   P  YL     + I  L+I
Sbjct: 333 FNRFGYLIR-IISCILIMASLDLLRGASKSWVVENPLIWPAQYLSPLLCTFIIALII 388


>gi|94266927|ref|ZP_01290580.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452379|gb|EAT02998.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 128/351 (36%), Gaps = 12/351 (3%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    
Sbjct: 15  EMLAPFFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + 
Sbjct: 75  MAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMD 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           QL            + E  F     D+ + +   +P+     G+++ D RD        A
Sbjct: 135 QLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISA 194

Query: 190 QSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           Q G++  D  A    + L+DG +HR          + FK Y L+    + +      +  
Sbjct: 195 QGGNLRADPAAGRVVLSLSDGSLHR--SAGAKSQTIFFKHYKLEIPLDSPTLGPPGRSSM 252

Query: 246 NLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             + L           PE    YR   E+H+RL   +   +  ++ +  +      R   
Sbjct: 253 TQAQLRQRATE---LGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLSQMGQGSRLAL 309

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +     S    + +      +             L   LF ++  +LL  
Sbjct: 310 GVPLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLWR 360


>gi|329890121|ref|ZP_08268464.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
 gi|328845422|gb|EGF94986.1| hypothetical protein BDIM_18180 [Brevundimonas diminuta ATCC 11568]
          Length = 342

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 126/325 (38%), Gaps = 8/325 (2%)

Query: 36  INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           + ++    +S+ +++K++   +P ++ ++ P    +     LT + R  EL      G S
Sbjct: 1   MEVIVERGQSVWVMVKLTLLALPQLIAVILPIGLFVGALIALTRLQREQELTAAYAAGVS 60

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
           R  LI+P L +A+++++   +    ++P  +   ++ +   +  L    +EE  F +  D
Sbjct: 61  RWALIRPALQIALIVTVISLLVNVFVQPWAQREGRRQAFAIRTDLAALLVEEGRFVQGPD 120

Query: 156 DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSP 213
            L + + +   N  ++ +F+    + +T   + A++           + + +G + R S 
Sbjct: 121 GLTVYVQQIEQNGLMKNLFVY-LDNGKTVTTWDAETARFGRVDGLPVLTMQNGSMQRYS- 178

Query: 214 ISKDISIMKFKSYTLQTE--SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE 271
             + ++ + F          +  S  I  K +D  L+ L +P P              +E
Sbjct: 179 SREVLNQLSFDQQVFDLSPYAKTSERIRFKPSDLWLTDLFDPTPA-LLETAGTRGELAAE 237

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
            H RL   L+ +     ++ A    A  R          + +    +      ++     
Sbjct: 238 GHSRLASPLYALAAMAFALAAILGGAFSRSGYAGRIARAAGAF-LVLRVIGYGLVAGSAW 296

Query: 332 NPYYIPILYLFLFCISSIFLLMIKK 356
           N     + Y+     + + L ++ +
Sbjct: 297 NGALNVLQYVVPLAATFLALRILFR 321


>gi|119773933|ref|YP_926673.1| hypothetical protein Sama_0796 [Shewanella amazonensis SB2B]
 gi|119766433|gb|ABL99003.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 369

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + + ++ +   L ++ +      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E+++    G S   + +  L LA+L  +F       + P  
Sbjct: 65  PLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTH 184
                Q+  KAQ     + L +  F    D    + + K   +N L+ +F+    D    
Sbjct: 125 EERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPDPDDE 184

Query: 185 ----KIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +  D    Q + LNDG  ++ SP S D  +++F  Y +Q +      
Sbjct: 185 HGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQEVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   L+ LL+ N               +E H R+   L      L++++A     
Sbjct: 245 RRRKMSALPLNQLLDQNTPEAV----------AELHWRIAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
           +  ++ K   +  ++ +  G F G      K  ++   P ++ + ++ L  +    +L+ 
Sbjct: 292 VNVRQGKFAKMLPAILLYLGYF-GLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLG 350

Query: 355 KKK 357
           K++
Sbjct: 351 KER 353


>gi|218961270|ref|YP_001741045.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729927|emb|CAO80839.1| putative Permease YjgP/YjgQ [Candidatus Cloacamonas
           acidaminovorans]
          Length = 442

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 152/411 (36%), Gaps = 63/411 (15%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F ++ + + F+    +I+  +NL+         + ++ G  +P +
Sbjct: 1   MKILKRYLLKEHIAPFFIALMVVTFVLLSDRIIDLMNLIIEKKLPWQTVFEVFGLSLPYM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + T      M+ + E+  I ++G +  +LI P++  A+LL+  +    + 
Sbjct: 61  LALSIPMAVLVATILAFGRMSVDREITAIKSSGINVYSLIGPLVIAALLLTGLMVYFNHW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P     +K L  K       + ++E  F    D   I   +   ++ L  + I D   
Sbjct: 121 FLPDTNHKLKNLMLKIAYYKPMTIIKEKEFTNFMD-YTIYARE-TTDSLLTDVLIYDRSQ 178

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANS 235
           +   +  +A+SG++    + +   IILNDGE+H ++           F  Y +   +  S
Sbjct: 179 SHFPRTIFAKSGNVIQKDNGNSLQIILNDGEMHERNEKEVGKYQKTTFSRYIINVRNLGS 238

Query: 236 STIVLKA---NDQNLS-----------------------------FLLNPNPNN------ 257
           +  + +    +D+ ++                              LL  +P N      
Sbjct: 239 NMEMFETGYRSDREMTYNQLITAIGDHKKELQTKQQEIEELNKRIELLQKSPQNFTRNME 298

Query: 258 --------------PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                              EL+ +   E+HK+ +     +IF LI I             
Sbjct: 299 LRRLQAMQKMVIDRTQELKELINSLLVEYHKKFSMSFAIIIFVLIGIPLGLMTRTS---- 354

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            I   F   SI F V++       ++    +  P L ++L  I  + L ++
Sbjct: 355 GIGMSFSVSSIIFLVYYIALNGGEQLADKGFMPPFLAMWLANIIFLILAVL 405


>gi|94263395|ref|ZP_01287209.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456231|gb|EAT06365.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 400

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 128/351 (36%), Gaps = 12/351 (3%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +   F  + L I  + ++ +++  ++ + S    L   L++  Y+ P++L    P    
Sbjct: 15  EMLAPFFAALLVINAVLFLGRLVPMLDEIFSLGVGLGDFLRVVAYITPSMLLFSLPMAAM 74

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           M      T +  + E++ +  +G S   ++ PV+F  +L  +    +  ++ P+  + + 
Sbjct: 75  MAVIIAFTRLAGDLEIMALKASGISLPRMLPPVVFFGLLTGLMTLATATVLIPRGMTAMD 134

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYA 189
           QL            + E  F     D+ + +   +P+     G+++ D RD        A
Sbjct: 135 QLMIHLAKEHIEEGIREKTFSEGLGDVVLYVDDISPDQRFWHGVYLSDLRDKDNPLTISA 194

Query: 190 QSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           Q G++  D  A    + L+DG +HR          + FK Y L+    + +      +  
Sbjct: 195 QGGNLRADPAAGRVVLSLSDGSLHR--SAGAKSQTIFFKHYNLEIPLDSPTLGPPGRSSM 252

Query: 246 NLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             + L           PE    YR   E+H+RL   +   +  ++ +  +      R   
Sbjct: 253 TQAQLRQRATE---LGPEHPRQYRYIGEYHQRLALPVGCFLLAMLGLSLSQMGQGSRLAL 309

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +     S    + +      +             L   LF ++  +LL  
Sbjct: 310 GVPLGLASFVAYYVLLTAAKSLGEAGTLPMALAIWLPNLLFLLAGGYLLWR 360


>gi|108761666|ref|YP_631128.1| hypothetical protein MXAN_2917 [Myxococcus xanthus DK 1622]
 gi|108465546|gb|ABF90731.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 370

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 138/368 (37%), Gaps = 14/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L  +     +   F+  + +V+Q L+  +++  S+ +L  + ++  YL P  
Sbjct: 1   MNRLSRYLLGELLVPLGVWVAFMFLLLFVMQFLRGTDVLLGSSVTLVDMARLLAYLAPHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P  F +     L  +  + EL+ +   G   + L+   + +A+ LS+ + +  + 
Sbjct: 61  LMMALPIAFLLAILLGLGRLGEDRELVALQALGIGPVRLLAAPMGIAVALSVLMLVITST 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            +P   + +K L ++         ++  +F+    +L +   + + +     + + D R+
Sbjct: 121 AQPWGLTGLKVLVSEVIRKNAVGDVKSGVFYEDLSNLTLYAEQVSADGKWTNVLLHDDRE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAII----LNDGEVHRK-SPISKDISIMKFKSYTLQT---ES 232
             +  +  AQ G +       +    L  GEVHR     +++ SI++F    +      S
Sbjct: 181 ANSPLLVLAQRGQVGTSTSGEVLRFALEAGEVHRSAGRETEEYSIIRFDQAEISVGVGAS 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
               +    + ++     L         + E    YR   H RL   L P+ F L+    
Sbjct: 241 MGKRSRFSYSREELTPGELMEAAREAEAQGEDARMYRMALHSRLGNALAPIAFALLGTPL 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSI 349
           A  R   RQ  +     ++L      +     F  +  K +        +   +F    +
Sbjct: 301 AMGR---RQSGRAWGYLLTLGGYVLYYLLSRVFEQMGQKGQLPAGLAGQMANLVFVAVGL 357

Query: 350 FLLMIKKK 357
             L    +
Sbjct: 358 VALYRVSR 365


>gi|157374154|ref|YP_001472754.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
 gi|157316528|gb|ABV35626.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
          Length = 370

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 137/356 (38%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLIREVFKAQIAVLFVLLAIFISQHFVRVLANASDGEFPASLVMTLLGLNLPYLAVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M   +E++++   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYAESEMVVLHGVGVSEWYITRVTLLLAVINMLFTGYLSVFVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT--- 181
                Q+   AQ     + + +  F    +    + + + + +N L  +F+    D    
Sbjct: 125 EEKQNQVLESAQSEAGLAAITQGRFQTSPNGRAVLFVERIDRDNQLDKVFVAQLPDPEDE 184

Query: 182 -QTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  A+ GS+  D      + LNDG  ++ +P   D  +++F  Y +Q +      
Sbjct: 185 SGQSNIVMAKGGSVVEDGSGGQRLQLNDGVQYQGTPKKVDFQVVEFGGYQMQIKEQEVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  L+  +               +EFH RL   L      L++++A     
Sbjct: 245 RRRKLSALPIKDLMALD----------GPEATAEFHWRLAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ K   +F ++ +  G F G      K  ++   +P  YL ++ I +  L +
Sbjct: 292 VNVRQGKFAKMFPAILLYLGYF-GLMIAGRKALEDG-VVPA-YLGMWWIHASALFL 344


>gi|294084200|ref|YP_003550958.1| hypothetical protein SAR116_0631 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663773|gb|ADE38874.1| hypothetical membrane spanning protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 364

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 138/354 (38%), Gaps = 6/354 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F +YI   + R+  +  + ++ I W+ Q ++ + LV +    +   L +S  +IP  L 
Sbjct: 2   QFNIYIFNQLFRATCVISMVLIGIMWLFQTIKLLELVVNKGAPIFDFLLMSITVIPLWLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +    V   +  + EL ++   G S   L K  + L +LL+  L+ +   + 
Sbjct: 62  IALPIAGFVAVNWVFHRILADRELTVMQAVGLSPAQLAKAPIALGMLLTSVLYFNSVYLL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      K L    +  +    L++ +F  +   L + I     N+ +  +FI D+R   
Sbjct: 122 PTSFGIYKDLQFNLRNGIPVILLQDGVFTEVVPGLTMFIGSREENDVVSDVFIQDTRTID 181

Query: 183 THKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              I  A++G          +IL +G+    +   +  +++ F++++L   +        
Sbjct: 182 KTIILTAENGKFVGKDYHPTLILGNGQRLEVNSDGESGALLLFETHSLSLVTNEKKPSER 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AND N   + N      +   +      +E H R+   +  +   ++ ++A      +R
Sbjct: 242 IANDMNEDSISNLLDAKKSPYADYAFQRIAEGHYRIASPVLALALIMM-VIAITLHGQLR 300

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFL 351
           +   +    I++S   G+              P+   ++++       I  I L
Sbjct: 301 RDLWLRRSLINISCCLGLIVALILARSWTITMPHLWILIHIVTTLPILICGIAL 354


>gi|157960739|ref|YP_001500773.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
 gi|157845739|gb|ABV86238.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
          Length = 371

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGDFPASLVMTLLGLNMPFLTVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I    G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRITLLLAVINMVFTAFLSIYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTH 184
                Q+   AQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPDPDDE 184

Query: 185 K----IYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A++G +  D    Q + L DG  ++ +P   D  +++F  Y +Q +      
Sbjct: 185 TGVANVVVARTGKVVEDEIGGQRLQLEDGVQYQGNPKRVDYQVVEFGGYQMQIKEQAVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  L++ +               +EFH RL   L      L++++A     
Sbjct: 245 RRRKLSAMPIGQLMDIDSPEAT----------AEFHWRLAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
           +  ++ K   +F ++ +  G F G      K  ++   P Y+ + ++    ++   LL+ 
Sbjct: 292 VNNRQGKFAKMFPAILLYLGYF-GLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLLG 350

Query: 355 KKK 357
           K++
Sbjct: 351 KER 353


>gi|167622903|ref|YP_001673197.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
 gi|167352925|gb|ABZ75538.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
          Length = 371

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 140/363 (38%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLIREVFKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLTVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I    G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILLAHGRMYAENEMVIFHGVGISEWYITRVTLLLAVMNMVFTAFLSIYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTH 184
                Q+   AQ     + L +  F    +    + + +   +N L  +F+    +    
Sbjct: 125 EERQNQVLEHAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPEPDDE 184

Query: 185 K----IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A++G +  D      + L DG  ++ SP   D  +++F  Y +Q +      
Sbjct: 185 TGVANVVVARTGKVLEDETGGQRLQLEDGVQYQGSPKRVDYQVVEFGGYQMQIKEQEVGE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  L++ +    +          +EFH RL   L      L++++A     
Sbjct: 245 RRRKLSAMPIGELMDIDTPEAS----------AEFHWRLAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
           +  ++ K   +F ++ +  G F G      K  ++   P Y+ + ++    ++   LL+ 
Sbjct: 292 VNNRQGKFAKMFPAILLYLGYF-GLMVAGRKSLEDGVIPQYLGMWWIHASALAIGILLLG 350

Query: 355 KKK 357
           K++
Sbjct: 351 KER 353


>gi|212636935|ref|YP_002313460.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
 gi|212558419|gb|ACJ30873.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
          Length = 371

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 134/351 (38%), Gaps = 22/351 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P ++ +V 
Sbjct: 5   RYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNMPFLIVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  IF       + P  
Sbjct: 65  PLSLFLGILLAHGRMYSENEMVILHGVGISEWYITRVTLLLAVVNMIFTGFLSIYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTH 184
                Q+   AQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EERQNQVLEHAQSEAGIAALTQGRFQTSPNGRAVLFVERIGRDNKLDKVFVAQLPDPDDE 184

Query: 185 K----IYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+SG +  D    Q + L DG  ++ SP   D  +++F  Y ++ +   +  
Sbjct: 185 TGLANVVVARSGKVVEDATGGQRLQLEDGVQYQGSPRRVDYQVVEFGGYQMEIKDQEAGE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  L++ +               +EFH RL   L      L++++A     
Sbjct: 245 RRRKLSALPIDQLMDIDTPEAT----------AEFHWRLAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +  ++ K   +F ++ +  G F G      K  ++      L ++    S+
Sbjct: 292 VNNRQGKFAKMFPAILLYLGYF-GLMVAGRKSLEDGVIPEFLGMWWIHASA 341


>gi|116747639|ref|YP_844326.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696703|gb|ABK15891.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 423

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 138/370 (37%), Gaps = 22/370 (5%)

Query: 1   MK-SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           MK +   Y+++       +  + +  +    ++ Q + ++ +S+ +L  L+ +    +P 
Sbjct: 33  MKMTLYRYLIKEQMVPLGVCLMGVSLVLITGRLFQLLKVLFTSSFTLGDLMALVALAMPK 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +        +N + EL+ +   G         V+ L + +++  F++  
Sbjct: 93  LMLFALPMASLLGVLLAFVRLNSDNELIALRAAGIGFHQFFPAVVSLLLGVTLISFVNMI 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDS 178
            + P      +        +     ++E  F      L       NP   +++GIF+ D 
Sbjct: 153 FVIPPTGKAFEVKLRSMARSGLPVLMKEGTFITAIPKLTFFFQSVNPTELSVRGIFVQDR 212

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN----DGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R+ +      A+S  I   R +  L     +G + R +   K+   + FK+Y L      
Sbjct: 213 REEKVRLAIVAESARIVYQRDSNHLTFKIANGSITRVADDMKNAQAVSFKAYDLSLSLDE 272

Query: 235 ----SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
               +    +   +  L  L              L     EFH+RL    FP    L+ +
Sbjct: 273 LIGSARGSKMNKREMTLRELYRVIVEKTGDVGHAL-----EFHQRLA---FPSGCLLLGL 324

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCIS 347
           + A   A+ RQR +I  I I L +    +   S     + +N    P L  +   L CI+
Sbjct: 325 IGAPLGAVFRQRGRIAGITIGLVVFLAYYVILS-AGKGLGENHLVHPFLACWAPNLLCIA 383

Query: 348 SIFLLMIKKK 357
           + F L  K +
Sbjct: 384 ASFYLWRKMR 393


>gi|170725439|ref|YP_001759465.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
 gi|169810786|gb|ACA85370.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
          Length = 370

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 145/363 (39%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLIREVLKAQIAVLFVLLAIFISQHFVRVLANASDGEFPASLVMTLLGLNLPYLAVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F +        M   +E++I+ + G S   + +  L LA++  +   +    + P  
Sbjct: 65  PLSFFLGILMAHGRMYAESEMVILHSVGVSEWYITRVTLLLAVINMLITGVLAVYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT--- 181
                Q+   AQ     + + +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EERQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRDNELDKVFVAQLPDPEAE 184

Query: 182 -QTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  AQ G +  D      + L DG  ++ +P   D  +++F  Y +Q +    + 
Sbjct: 185 QGQSNIVLAQGGKVIEDETGGQRLQLRDGVQYQGTPKQVDFQVIEFGGYQMQIKEQEVNE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  L+         + E  E+ ++EFH RL   L      L++++A     
Sbjct: 245 RRRKLSALPIEELM---------KQEGPES-KAEFHWRLAIPL---SIPLLTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
           +  ++ K   +F ++ +  G F G      K  ++   P Y+ + ++ L  +    LL+ 
Sbjct: 292 VNVRQGKFAKMFPAILLYLGYF-GLMIAGRKALEDGIIPGYLGMWWIHLSALILGGLLLG 350

Query: 355 KKK 357
           K++
Sbjct: 351 KER 353


>gi|224368911|ref|YP_002603073.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691628|gb|ACN14911.1| predicted permease family protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 391

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 13/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   YI R +   F +S +F+  I  + +I +  N+V +    +  +L +    +P  
Sbjct: 2   MTTINRYIFRELIPPFAISAVFLTSIFIMTRIPEITNMVVNYNTGIFSVLLLIACTLPRF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +        M+ + E++ +   G +   L+ PVL   +L +        I
Sbjct: 62  MEFTIPMSVMISVLLTFMRMSGDNEIIALKGGGITIYRLLPPVLIFCLLGTAVTLWITII 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P    + K L      +     L +  F     D+ I IS  +     L+ +FI D R
Sbjct: 122 GVPLGNMSFKTLGIAMARSNLNVALSDGTFNSSFKDVMIYISSMDVKTKKLRDLFIEDRR 181

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 I  A  G +  D      A+ L  G V++    S+ I+ + F +Y +  + A  
Sbjct: 182 TKDRVTISVAPEGVLVKDAVTGSYALRLYGGSVNQVDLKSRSINNVGFDTYDINLDFAQV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS--EFHKRLTQWLFPVIFGLISIVAA 293
                  N       LN          E  E   +  EFH++ +  +  +  G++++   
Sbjct: 242 QKSSKVGNKDFDEMTLNELRAFLKKTSEKPELNAALMEFHEKFSIPIACIAMGILAMALG 301

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFL 351
            + A  R+            + + +            +N  Y P+  +++    +  I  
Sbjct: 302 LQAASSRKTAGFGLGMFFFLLYYLLLAAGW----SAGENGLYPPLIGMWMPDIVMGGIGS 357

Query: 352 LMIKK 356
            ++ +
Sbjct: 358 FLLYR 362


>gi|163750106|ref|ZP_02157349.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
 gi|161330163|gb|EDQ01145.1| hypothetical protein KT99_20601 [Shewanella benthica KT99]
          Length = 364

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 140/361 (38%), Gaps = 25/361 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R + ++ +     ++ I      ++ +   S      ++++ + G  +P +  +V P 
Sbjct: 1   MIREVFKAQIAVLAVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLAVLVIPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        M  ++E++I+   G S   + +  L LA+   IF  I    + P    
Sbjct: 61  SLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTGILSVYVTPWAEE 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ---- 182
              Q+   AQ     + + +  F    +    + + +   NN L  +F+    D      
Sbjct: 121 KQNQVLEHAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELYKVFVAQLPDPDDESG 180

Query: 183 THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              I  AQ G +  D      + L+DG  ++ +P   D  I++F SY +Q +        
Sbjct: 181 ISNIVVAQGGKVIEDETGGQRLQLSDGVQYQATPKKVDFQIIEFGSYQMQIKEQPVDERR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K +   ++ L+  +   P           +EFH RL   L      L++++A     + 
Sbjct: 241 RKLSAMPINELM--DIEGPAAT--------AEFHWRLAIPL---AIPLMTLIAVPMARVN 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIKK 356
            ++ K   +F ++ +  G F        K  ++   P Y+ + ++    +    LL+ K+
Sbjct: 288 VRQGKFAKMFPAVLLYLGYFC-LMIAGRKALEDGVIPEYLGMWWIHASALCMGILLLGKE 346

Query: 357 K 357
           +
Sbjct: 347 R 347


>gi|239616611|ref|YP_002939933.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505442|gb|ACR78929.1| permease YjgP/YjgQ family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 1466

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 134/356 (37%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI +    +F +     +    +  + Q  +L+      ++ L  +  Y +P  
Sbjct: 1   MRILIKYIFKQSMGAFFIGLGGFLIFVSLELLYQLSDLIVRYKVGIDKLFLLIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L+ M  + EL+ +   G +  T++ P +  A+LLS   ++  + 
Sbjct: 61  IVLGIPVGVLLAIFWTLSRMQSDNELIALQTHGITLKTVVLPFVIFAVLLSGITYLFNDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P       +  A+         L+EN F       Y+ I K +P    L+ I + D  
Sbjct: 121 IVPYANRKAYEAQARFIYRRPEVTLKENAFMEDGKGRYLYIKKIDPETGELKKILLYDLS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T     A+S + + D+   I++DG V            M F+S  L   S     I 
Sbjct: 181 GGKTRVT-SAKSATKEGDK--WIMHDGRVFELDSKGFLTFDMSFESLELDFGSDIQEYIR 237

Query: 240 L-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K+  +  S  L     + +       +      ++ +  L P++  +I +  +    L
Sbjct: 238 QSKSPREMTSAELKKKIASFSRLGVRTSSLMVALQEKYSLSLAPLVIVMIGVPLSLIFNL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   FI + I  G     S +  +   NP Y P +   +F I+ I   ++
Sbjct: 298 RSKSWSVILTFILIVIYQGSGAWLSAMGKEDLLNPAYAPWIPNIIFAITGIITYLL 353


>gi|308272621|emb|CBX29225.1| hypothetical protein N47_J02060 [uncultured Desulfobacterium sp.]
          Length = 409

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 135/365 (36%), Gaps = 13/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+ + I   F ++ LF  F+  + +IL   NLV +   SL  +  +  Y+IP  L
Sbjct: 20  TIVSRYLFKEILSPFAINTLFFTFLFLMAKILFITNLVVNYNMSLPKIGLMLLYIIPNFL 79

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    M         + + E++ +   G S   L+ PVL    +  I  F+     
Sbjct: 80  VFVIPMSVMMAILLTFLRFSSDNEIIALKTGGISIYGLLPPVLIFCFIGCILTFLISLYA 139

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P  R +I++L+ +   +     L+E  F     D+ + ++K +   + L  +F+ D R 
Sbjct: 140 IPWGRLSIEKLTMEIAQSNFEIGLKERTFNDNFKDIMLYVNKVDLKKDELIDVFVEDGRS 199

Query: 181 TQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS- 235
                   A  G +  +   +     L DG +++ +  +K ++ + F +Y +  +  N+ 
Sbjct: 200 EDMASTIIAPKGVLLFEENRLSFRLRLYDGVINQVNTKNKSVNSIGFDTYDINLDLKNAF 259

Query: 236 -----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +             LL+   ++   +         E HK+ +      + G++S+
Sbjct: 260 SEMEKTGQRKNEKKMYFYELLD-YIDSFKIKNSRYYNALFELHKKFSVPFACFVLGILSV 318

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +     +   +    I   + + +      +       P +I +    +   S   
Sbjct: 319 ALGTQLKSATRSFGLGLGLIFFLLYYLILSVGYALGETGFY-PPFIGMWAPNILIGSIGI 377

Query: 351 LLMIK 355
            L I+
Sbjct: 378 YLFIR 382


>gi|302037951|ref|YP_003798273.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
 gi|300606015|emb|CBK42348.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
           defluvii]
          Length = 361

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 136/363 (37%), Gaps = 13/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R +   F +S   + F+    ++L+ + L+ +       +LK+  +L+P+ L
Sbjct: 4   TILDRYIFRELFSPFGISLAALCFVMLTKELLRLVELLVTKGIGFLSVLKVFAHLLPSFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ + EL+ +   G S + L + V   A L+     +     
Sbjct: 64  VLTLPIAGIIATITAFGRLSLDKELVAMRAAGFSLLRLSQSVFIFAALVCGLTLVMAQYG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P     +K+++           L+  +F      + I +         +GIF+ D R+ 
Sbjct: 124 QPWSNVNLKKVALNLLRDELVLELDRGVFNEAIPKMTIYVPDAQEGQDNRGIFVADERNP 183

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              +I  AQ   +  D      A+ L +G +H +    ++   + F SY L+      S 
Sbjct: 184 ADPRIIVAQQYQVMTDPASSQVALRLMNGVIHSRPQNPEEYQKISFTSYDLKLS---LSA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +  A ++    ++     +  +          E++K L      ++F ++ +       
Sbjct: 241 SLYGAEERTPIDVIRAKLESTGWTDTNALRRLMEYYKDLAFPAASLVFCILGVPV---GI 297

Query: 298 LVRQRKKIHPIFISLSISFGVF---WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + ++   I    + + +    +       +++  +  +P+    L   +F + +I     
Sbjct: 298 VSKRSGSIGGFAVGVLVVIAYYVINVACEFLVTTLWISPFAGAWLPNVIFTVVTILWFYR 357

Query: 355 KKK 357
             +
Sbjct: 358 VSR 360


>gi|310778171|ref|YP_003966504.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
 gi|309747494|gb|ADO82156.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
          Length = 357

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 142/363 (39%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+ +    +       FI  +  ++Q +  +     SL  +++I  + +P +
Sbjct: 1   MKIIHRYILKEMRMPIIFGISLFTFIFLIDIMVQMMENIIVKGVSLLDVVRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +      + +   +E   +++ G S  ++IKP   LA+ ++ F+F  +  
Sbjct: 61  LSQTIPMGFFLGVMITYSKLTSTSESTAMNSMGMSLNSIIKPTFMLALGITAFVFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     ++QL+ K         L+EN++    DD  I I K   + + + I I     
Sbjct: 121 IIPNSFVKLQQLTLKIAYEKPAFQLKENMYIDEVDDYSIYIDKVGGDGSAENILIFKKEK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
             +         ++  D  A+IL D E +  +P   +    +F    +   S   N    
Sbjct: 181 DNSFPTVLTAKKAMWKDA-AMILEDAEFYNLNPDGSEKLRGEFSRQKIPINSFFENVKMK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V +    ++  LL     + +   E    Y  E +K+L   L  +   ++ I+       
Sbjct: 240 VSEIETMSVRQLL---KESKDKDDEEKLPYIVEMNKKLAIPLSAI---MLGILGVLFSVG 293

Query: 299 VRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +  K     ISL + F           + ++ + +P+       F+    +I++ ++K
Sbjct: 294 HHRSGKGVSYGISLGVIFLYIASLNVGVVMANRGKISPFIGIWTPNFVLLGLTIYMYLLK 353

Query: 356 KKY 358
           K+ 
Sbjct: 354 KRR 356


>gi|153004268|ref|YP_001378593.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027841|gb|ABS25609.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 370

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 123/365 (33%), Gaps = 9/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ + I   F    LF+  I    Q+L + +++  S  SL  +  +  YL+P  
Sbjct: 1   MRLLHRYLAKEILLPFAAGLLFLTQILLATQLLAQADVLFGSGVSLVDVGAVVLYLLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S   L+   L + + ++         
Sbjct: 61  LGYVLPIAFLLGAVLGVGRLAEDREVVALGAAGFSPAFLVPVPLAIGVAVAGLGLWLSLD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +    +       + +    F+       +   +         + I D  D
Sbjct: 121 VVPRSLDAARLRLNEIVKRNVMNDVRPGTFYDQIPGYTLYA-ERVHGGRWGNVLISDRSD 179

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKS----YTLQTES 232
                +  A++G ++         ++L+DGEVHR+   + +  +  F+       L T  
Sbjct: 180 PAAPVLALARAGGLEPVGAGEEMRLVLDDGEVHREQVDADEYVLATFRRADVVLGLGTAL 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           ++ + +     D                            H+R+   L  + F L+++  
Sbjct: 240 SDRNAVSRTGRDDLAGLQARVAEARAKGDAAAARRAEGSLHRRIASPLAVIPFALLAVPL 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              R   R         + ++    +  G       +   P  + +  L L  I+   + 
Sbjct: 300 GASRRAGRAFGVGATFLVVVAHYLLLRSGEVMAQRGVLPAPLALQLPTLVLSAIALALIA 359

Query: 353 MIKKK 357
           +  ++
Sbjct: 360 LQVRR 364


>gi|127511873|ref|YP_001093070.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
 gi|126637168|gb|ABO22811.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
          Length = 370

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 137/356 (38%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLAVLVV 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M   +E+++  + G S   + +  L LA+   +F       + P  
Sbjct: 65  PLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQ-- 182
             T  ++   AQ     + L +  F    +    + + +   +N L  +F+    D +  
Sbjct: 125 EETQNRVLENAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPDPEDG 184

Query: 183 --THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  AQ GS+  D      + LNDG  ++      D  +++F  Y +Q +      
Sbjct: 185 ASQSNIVVAQGGSVIEDESGEQRLKLNDGIQYQSKQNQLDYQVVQFAGYEMQIKEQEVDQ 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   +  LL+          E  E   +EFH RL   L      LI++     R 
Sbjct: 245 RRRKLSALPIDQLLD---------TEGPEAV-AEFHWRLAIPLAIPFMTLIAVP--MARV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            VRQ K    +F ++ +  G F G      K  ++   IP  YL ++ I +  L +
Sbjct: 293 NVRQGK-FAKMFPAILLYLGYF-GLMIAGRKALED-EVIPA-YLGMWWIHASALFL 344


>gi|51246435|ref|YP_066319.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
 gi|50877472|emb|CAG37312.1| hypothetical protein DP2583 [Desulfotalea psychrophila LSv54]
          Length = 351

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 123/319 (38%), Gaps = 13/319 (4%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L IL   S    P +     P    +  T   + ++ + ELL +   G S   ++ PV  
Sbjct: 4   LQILSAYSPTSFPNIFLYTLPMASMLGITICFSRLSTDMELLALKAGGISIYKILPPVFL 63

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN 165
           +A  +++  F     + P     +K+LS +         ++ + F     D+ I + K +
Sbjct: 64  VASAITLIAFYFSTQLIPASELAMKKLSYQILKEKIDQGIQAHKFTDAMGDIVIYVDKVD 123

Query: 166 PN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI 220
                   +++ D R  +   I  A+SGS+  + +     I L DG +HR  P  +   I
Sbjct: 124 KETGDWHNVWVSDMRGVKQPTITMARSGSMKSNSKQMSITIKLTDGSLHR--PEEQGTEI 181

Query: 221 MKFKSYTLQ--TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           + FK YT+    E+   +  +L     ++  LL       N   +    Y  EFHKRL  
Sbjct: 182 ITFKDYTINMPLETGGKNIFMLHKRLLSMPELLEQAKRWGNESKKRGRIYLIEFHKRL-- 239

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIP 337
            + P+   ++S +A       R  KK   I + L I    +   +      E      IP
Sbjct: 240 -ILPIGCLMLSFLALPLGLQARPGKKAIGIPVGLGIFIVYYILHTVGKELAEAGTVPLIP 298

Query: 338 ILYLFLFCISSIFLLMIKK 356
            L+L       + +  I +
Sbjct: 299 ALWLPNVLFFLLAIFWIYR 317


>gi|120553894|ref|YP_958245.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
 gi|120323743|gb|ABM18058.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
          Length = 367

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 150/376 (39%), Gaps = 31/376 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R I  S L     ++ +    + ++ +   +    +  +L  I GY  P  
Sbjct: 1   MSIIFRYLIRQIMVSMLAVSGILLLVFMSGRFIKYLADAAEGEIAAGVLFAIMGYRFPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   L+   L  A+ + + + +    
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLFACGVSEKQLLAKTLLGALPVMLVVGVMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNT-LQGIFIVD- 177
           I P     ++ +  + + A  F  L    F      D        + +   LQG+FI + 
Sbjct: 121 ISPWGMKQVEHIFNEQRKATEFEMLAPGRFQDFTSGDRVTYTEALSDDKRQLQGVFIAEY 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            +D +   +  A+SGS  +D +     ++L DG   + +P   D ++ +F++Y L+  S 
Sbjct: 181 DKDGKGVTLITAESGSQFIDEETGSRFLVLEDGGRFQGAPGRLDYNVTEFEAYGLKIVSG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              +   K  ++ LS L   N +NP          R+  H R++  L   I  L+++   
Sbjct: 241 QEGS---KELEEGLSTLALWNSDNPED--------RALLHWRISLPLIVPIVTLLAV--R 287

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLF-LFCISSI 349
             R   RQ +  H +   L   +  + G   +       E+ P ++ +L++  LF    +
Sbjct: 288 LSRVNPRQGRFFHLLPAMLV--YITYLGLLIVARDALADEKVPEWVGMLWVHALFLALGL 345

Query: 350 FL-----LMIKKKYTK 360
           +L      + +++  +
Sbjct: 346 WLQFGPGWLNRRRLER 361


>gi|315223351|ref|ZP_07865210.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
 gi|314946682|gb|EFS98671.1| YjgP/YjgQ family permease [Capnocytophaga ochracea F0287]
          Length = 495

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 121/293 (41%), Gaps = 19/293 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV-D 177
           + P     +  L +          + E +F  + +D+ IK+ K   +N   L+ + I   
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKRGDNDEFLENVLIHKK 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHR-------KSPISKDISIMKFKS 225
           + D     +  A+ G +   +       +IL DG  +        ++   +  + + FK 
Sbjct: 181 TPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAKVYFKK 240

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +         ++ +  N    NY    +++ R++F + +T 
Sbjct: 241 YIINLDLSHLNNVNFNEKTDATTYRM-MNVGQLNYA---IDSLRTDFKQNITD 289



 Score = 39.6 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           ++  YR +L+  +      +    +   +      VAA   A +R+     P+ I++ + 
Sbjct: 362 SDLEYRYKLMNLHILNLSDKFALTVACFVLF---FVAAPLGAFIRKGGIGMPLVIAMILF 418

Query: 316 FGVFWGFSYIIHKIEQNPY------YIPILYLFLFCI 346
              ++   ++ +  E N        +IP L L    I
Sbjct: 419 LAYYFIGMFMKNIAENNTINPALAPWIPALILLPLGI 455


>gi|256820290|ref|YP_003141569.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256581873|gb|ACU93008.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 495

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 121/293 (41%), Gaps = 19/293 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYIITQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + +++P++ L  LLS+  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGAFAENYEFAAMKASGISLMRVMRPLIILMALLSLGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV-D 177
           + P     +  L +          + E +F  + +D+ IK+ K   +N   L+ + I   
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKRGDNDEFLENVLIHKK 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHR-------KSPISKDISIMKFKS 225
           + D     +  A+ G +   +       +IL DG  +        ++   +  + + FK 
Sbjct: 181 TPDKVNRTVINAKRGELKSSKTNSNFLQLILEDGTYYEDIKTNSYEAQQKEPFAKVYFKK 240

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +         ++ +  N    NY    +++ R++F + +T 
Sbjct: 241 YIINLDLSHLNNVDFNEKTDATTYRM-MNVGQLNYA---IDSLRTDFKQNITD 289



 Score = 39.6 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           ++  YR +L+  +      +    +   +      VAA   A +R+     P+ I++ + 
Sbjct: 362 SDLEYRYKLMNLHILNLSDKFALTVACFVLF---FVAAPLGAFIRKGGIGMPLVIAMILF 418

Query: 316 FGVFWGFSYIIHKIEQNPY------YIPILYLFLFCI 346
              ++   ++ +  E N        +IP L L    I
Sbjct: 419 LAYYFIGMFMKNIAENNTINPALAPWIPALILLPLGI 455


>gi|114562103|ref|YP_749616.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333396|gb|ABI70778.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 370

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 142/364 (39%), Gaps = 27/364 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++  + ++     L ++ I    Q ++ +   S      ++++ + G  +P +  +V 
Sbjct: 5   RYLISEVLKAQFAVLLVLLTIFISQQFVRVLADASDGEFPASLVMTLLGLNLPQLTVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F +        M    E++++   G S   + +  L LA    +F       + P  
Sbjct: 65  PLSFFLAILLAHGRMYAENEMVVLHGVGVSEWYVTRVTLLLAFANLLFTAYLSVYVGPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT--- 181
                Q+  KAQ     + L +  F    +    + + K N +NTL  +F+    D    
Sbjct: 125 EERQNQVLEKAQSEAGLAALTQGRFQASPNGRAVLFVEKINKDNTLDKVFVAQLPDPEDE 184

Query: 182 -QTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  A  G +  D    Q + L  G  ++ SP S ++ +++F  Y ++ +      
Sbjct: 185 NGLTNIVVANKGRVIEDNIGSQQLQLEKGFRYQGSPKSLELQVIEFGGYKMEIKEQEVDE 244

Query: 238 IVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              K +   +  LL+ P P              +EF  RL     P+   L++++A    
Sbjct: 245 RRRKLSAMPIDELLDTPGPE-----------AAAEFQWRLA---IPIAIPLLTLIAVPLA 290

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLM 353
            +  ++ K   +  ++ +  G F G      K  Q+   P Y+ + ++  F +    LL+
Sbjct: 291 RVNVRQGKFAKMGPAILLYLGYF-GLMIAGRKALQDEVVPQYLGMWWIHGFALLLGLLLL 349

Query: 354 IKKK 357
           IK++
Sbjct: 350 IKER 353


>gi|298529508|ref|ZP_07016911.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510944|gb|EFI34847.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 390

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 140/351 (39%), Gaps = 14/351 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I++ +G  FL++   ++ +  + +++   ++    +  +  ++K   YL P+ 
Sbjct: 1   MKILHRQIIKEVGTIFLVTLASMLSLIVIGRMIDLKDIFVGQSIQILYVIKSFFYLGPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L MV P    +        M+ + EL  +  +G S  +L+   L  ++    F       
Sbjct: 61  LSMVIPIACMLSIFLCFLRMSSDRELTALQTSGISIRSLVLSPLLFSLGAMGFTLYVTLH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           +        ++ + +     T   ++  +F R+  D+ I +   +P  + L+ +FI D  
Sbjct: 121 LTSWGIDNFRETAVEMVREQTEVSMQPGVFHRMIPDMAIYVHNRDPGTSELKEVFISDDT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQT---ES 232
             +      A +G +  D++      IL+DG ++R+     + S++ F  Y L+      
Sbjct: 181 VPEAPLTIVAPTGRMLSDKEEGMLYFILDDGRIYRQDQE--EHSLVSFGEYRLRLDLFSL 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              + +  K  ++     L    ++             E HKR +  L  +I   + + A
Sbjct: 239 LGDAGLRDKRPEEMSWGELQAYKDDAQADSRQYRLAVLEEHKRFSLPLACLI---LGLFA 295

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                 ++   +   + +++S  F +++     ++ + +     P L +++
Sbjct: 296 VPLGLTLQGLGRNWGLLLAMSC-FLIYYSLFTAVYGLGEAGTLNPDLAMWM 345


>gi|317153285|ref|YP_004121333.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943536|gb|ADU62587.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 388

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 145/362 (40%), Gaps = 14/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I + + + F ++   ++ +  + ++LQ  +L  S       +L++  YL P  
Sbjct: 1   MKLLHRQIFKELLKLFGLTVACLLGLILIGRMLQLRSLFLSQNIGFFNILQLFFYLTPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++TP    +        M+ + EL  +   G S   ++   +   +L ++F F     
Sbjct: 61  LLLITPIATMLSVFLTFLRMSTDNELTALKANGVSLYRMLPAPIAFCVLCTLFTFFISMW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    K    +   + +   L+  +F +    +     + + +   L+ +F+ D  
Sbjct: 121 GLAWGMDMFKTSLYQFARSHSRFALQPGVFNKEFPGITFYAHQVDNDTGELKFVFVRDQS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTE---- 231
            +    +  A    I    +     I+ N G ++R+S   +DI+I++F SY+++ +    
Sbjct: 181 ISGASVVVVAPEARIVSSPKTAEVHIVFNKGRIYRQS--GEDINILRFGSYSVRLDLGKL 238

Query: 232 SANSSTIVLKANDQNLSFL--LNPNPNN-PNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
             + S    KA D   + L  +  +P+  P    + L    +E++KRLT  L  +I G+ 
Sbjct: 239 LGDFSFSEEKAKDMTFAALREIRNDPSIAPQQTAQFLRKVDTEYYKRLTLPLGCLILGMF 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +I  A     +RQ+  +        + + +F     +       P Y       L+ + +
Sbjct: 299 AIPIAYVFRGLRQQYGLLLSMGLFLLYYSMFSLSVSLGEAGAIAPVYGLWAPNILYVLVA 358

Query: 349 IF 350
           +F
Sbjct: 359 VF 360


>gi|294139610|ref|YP_003555588.1| hypothetical protein SVI_0839 [Shewanella violacea DSS12]
 gi|293326079|dbj|BAJ00810.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 370

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 139/356 (39%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  +P +L +V 
Sbjct: 5   RYLIREVLKAQIAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLLVLVI 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M  ++E++I+   G S   + +  L LA+   IF  +    + P  
Sbjct: 65  PLSLFLGILMAHGRMYADSEMVILHGVGVSEWYITRVTLLLAVGNMIFTAMLSVYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQTH 184
                Q+   AQ     + + +  F    +    + + +   NN LQ +F+    D    
Sbjct: 125 EERQNQVLENAQSEAGLAAITQGRFQTSPNGRAVLFVERIGRNNELQKVFVAQLPDPDDE 184

Query: 185 K----IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  A+ G +  D      + L+DG  ++  P   D  I++F  Y +Q +      
Sbjct: 185 SGMSNIVVAEGGKVIEDDTGGQRLQLSDGVQYQARPKHVDFQIIEFGGYQMQIKEQPVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   ++ L++ +               +EFH RL   L      L++++A     
Sbjct: 245 RRRKLSAMPINDLMDID----------GPAATAEFHWRLAIPL---AIPLMTLIAVPMAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ K   +F ++ +  G F G      K  ++   +   YL ++ I +  L +
Sbjct: 292 VNVRQGKFAKMFPAILLYLGYF-GLMIAGRKALEDG--VVPEYLGMWWIHASALFL 344


>gi|220916596|ref|YP_002491900.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954450|gb|ACL64834.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 371

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 137/368 (37%), Gaps = 13/368 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +    +       + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYA-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKS----YTLQTES 232
                +  +  G ++         ++L  GEVHR+   + D +   F        L T  
Sbjct: 180 PDAPMLALSHRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAEILVGLGTAL 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISI 290
           ++ + +   + +  +S L          + +++E  R E   H++L+  L  V F L+ +
Sbjct: 240 SDRNVLAKSSREATVSDLRA-RAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGV 298

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               +R   R    +   F+ + + + +  G   +         +   L   +   + I 
Sbjct: 299 PLGAERRGGR-AFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGIG 357

Query: 351 LLMIKKKY 358
           L+++  + 
Sbjct: 358 LVLLMARR 365


>gi|197121803|ref|YP_002133754.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
 gi|196171652|gb|ACG72625.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
          Length = 371

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 136/367 (37%), Gaps = 11/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +    +       + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNEVVKRNVTNDVRGGTFYDQIPGYTIYA-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTE---SA 233
                +  ++ G ++         ++L  GEVHR+   + D +   F    L      + 
Sbjct: 180 PDAPMLALSRHGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIV 291
           +   ++ K++ +     L         + +++E  R E   H++L+  L  V F L+ + 
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEARRQEGYLHRKLSAPLVVVAFALLGVP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +R   R    +   F+ + + + +  G   +         +   L   +     + L
Sbjct: 300 LGAERRGGR-AFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAVGVGL 358

Query: 352 LMIKKKY 358
           +++  + 
Sbjct: 359 VLLMARR 365


>gi|146292282|ref|YP_001182706.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|145563972|gb|ABP74907.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|319425582|gb|ADV53656.1| inner membrane component of lipopolysaccharide transporter, LptF
           [Shewanella putrefaciens 200]
          Length = 370

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 146/363 (40%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  IP ++ +V 
Sbjct: 5   RYLIREVFKAQIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT--- 181
                Q+  KAQ     + L +  F    +    + + +   +N L+ +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDPSDE 184

Query: 182 -QTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A++G +  D    Q + LN+G  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   ++ LL         + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRKLSALTVTDLL---------KVESAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
            VRQ K    +  ++ +  G F G      K  Q+   P Y+ + ++ L  +     L+ 
Sbjct: 293 NVRQGK-FAKMLPAVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFLLG 350

Query: 355 KKK 357
           K +
Sbjct: 351 KDR 353


>gi|86158887|ref|YP_465672.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775398|gb|ABC82235.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 371

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 136/367 (37%), Gaps = 11/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I   F  + LF+  I    QIL + +++  S  SL  +  +   L+P +
Sbjct: 1   MGLIDRYLAREILLPFAAALLFLTQILLATQILGQADVLFGSGVSLVDVGLVMLSLMPHL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F +     +  +  + E++ +   G S + L++  L L ++++         
Sbjct: 61  LGYVIPVAFLLGVVLGVGRLAEDREVVALGAAGLSPVRLVRVPLLLGLVVAALGAWLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +EP      +            + +    F+       I   +       + + I D  +
Sbjct: 121 VEPASIRAARLRLNDVVKRNVTNDVRGGTFYDQIPGYTIYT-ERARGGRWENVLIQDRSN 179

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTE---SA 233
                +  ++ G ++         ++L  GEVHR+   + D +   F    L      + 
Sbjct: 180 PDAPMLALSRRGRLEPVGAGQDMRLVLEQGEVHREEVGTADYASAAFGKAELLVGLGTAL 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIV 291
           +   ++ K++ +     L         + +++E  R E   H++L+  L  V F L+ + 
Sbjct: 240 SDRNVLAKSSREATVSDLRARAAAAREKGDVVEERRQEGYLHRKLSAPLVVVAFALLGVP 299

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +R   R    +   F+ + + + +  G   +         +   L   +   + + L
Sbjct: 300 LGAERRGGR-AFGMGATFLLVVVHYLLLRGGEVLTQLGHLPAAFALQLPNLVLGAAGVAL 358

Query: 352 LMIKKKY 358
           +++  + 
Sbjct: 359 VLLMARR 365


>gi|91792232|ref|YP_561883.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
 gi|91714234|gb|ABE54160.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
          Length = 370

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 138/363 (38%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++  + ++     L ++ I    Q ++ +   S+     +++L + G  +P +  ++ 
Sbjct: 5   RYLIAEVLKAQFAVLLVLLTIFISQQFVRVLADASNGEFPASLVLTLLGLNLPQLTLLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F +        M    E++++ + G S   + +  L +A+   +F  +    + P  
Sbjct: 65  PLSFFLGILLAHGRMYAENEMVVLHSVGVSEWYVARVTLLIALANLVFTCVLSMYVSPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQT- 183
                Q+  KAQ     + L +  F    +    + + K + +N L  +F+    D    
Sbjct: 125 EERQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVEKISKDNQLSKVFVAQLPDPDDK 184

Query: 184 ---HKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  AQ G +  D    Q + L  G  ++ SP      +++F  Y ++ +      
Sbjct: 185 EGMSNVVVAQQGRVIEDSIGSQQLQLERGVRYQGSPQGLAYQVIEFGGYRMEIKEQEVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +  ++  L                   +EFH R    L      L++++A     
Sbjct: 245 RRRKLSALSMEQL----------NDTQGPEAAAEFHWRFAIPL---SIPLLTLIAVPLAR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
           +  ++ K   +F ++ +  G F G      K  ++   P Y+ + ++ +  +     L+ 
Sbjct: 292 VNVRQGKFAKMFPAILLYLGYF-GLMIAGRKALEDEVIPEYLGMWWIHISVLLMGVFLLG 350

Query: 355 KKK 357
           K++
Sbjct: 351 KER 353


>gi|114048399|ref|YP_738949.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
 gi|113889841|gb|ABI43892.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
          Length = 370

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 145/363 (39%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ +V 
Sbjct: 5   RYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILALINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQT- 183
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPDPNDE 184

Query: 184 ---HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 IGLTNVVVAKGGRVQEDQNGSQQLHLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +  +L+ L+         + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRKLSALSLADLM---------KVEGPEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
            VRQ K    +  ++ +  G F G      K  Q+   P Y+ + ++ L  +    LL+ 
Sbjct: 293 NVRQGK-FAKMLPAVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLG 350

Query: 355 KKK 357
           K +
Sbjct: 351 KDR 353


>gi|24372947|ref|NP_716989.1| hypothetical protein SO_1369 [Shewanella oneidensis MR-1]
 gi|24347090|gb|AAN54434.1|AE015581_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 370

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 140/356 (39%), Gaps = 24/356 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ +V 
Sbjct: 5   RYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQT- 183
                Q+  KAQ     + L +  F    +    + + +   +N L+ +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPDPNDE 184

Query: 184 ---HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 IGLTNVVVAKGGRVIEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   L  LL  +               +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRKLSALPLGELLKID----------GPEAVAEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            VRQ K    +  ++ +  G F G      K  Q+   IP LYL ++ I    L+M
Sbjct: 293 NVRQGK-FAKMLPAVLLYLGYF-GLMVAGRKALQDG-VIP-LYLGMWWIHLSALIM 344


>gi|213963082|ref|ZP_03391340.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
 gi|213954166|gb|EEB65490.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
          Length = 508

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 123/293 (41%), Gaps = 19/293 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+    ++FL +   ++ I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKIIDRYIITQFLKNFLGALSILILIFVFHTIFTYIDELAGRGLELWIIFKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     S   + E   +  +G S + +++P++ L  LLSI  F   N 
Sbjct: 61  IPIIMPLAVVIASIMTFGSFAESYEFAAMKASGISLMRVMRPLIILMALLSIGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV-D 177
           + P     +  L +          + E +F  + +D+ IK+ K + +N   L+ + I   
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAIAEGVFSNIGEDISIKVGKKSGDNDQFLESVLIHKK 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHR-------KSPISKDISIMKFKS 225
           + D     +  A+ G +   +       +IL DG  +        ++      + + FK 
Sbjct: 181 TPDRVNRTVINAKRGELKSAKSNPNFLQLILEDGTYYEDIKTNTYETQQKMPFAKVHFKK 240

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +         ++ +  N N  +Y    +++ RS+F + +T 
Sbjct: 241 YVINLDLSHLNNVDFNEKSDATTYRM-MNVNQLDYA---IDSLRSDFKQNITD 289



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           ++  YR +L+  +      +    +   +      VAA   AL+R+     P+  ++ + 
Sbjct: 364 SDLEYRYKLMNLHIMNLSDKFALTIACFVLF---FVAAPLGALIRKGGIGLPLVFAMILF 420

Query: 316 FGVFWGFSYIIHKIEQNPY------YIPILYLFLFCI 346
              ++   ++ +  E N        +IP L L    I
Sbjct: 421 LSYYFIGMFMKNIAENNTINPALAPWIPALILMPLGI 457


>gi|296115281|ref|ZP_06833921.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
 gi|295978184|gb|EFG84922.1| putative permease [Gluconacetobacter hansenii ATCC 23769]
          Length = 406

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 143/370 (38%), Gaps = 11/370 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y+L+ +   F +S   ++    + ++L   NL++S+  S+   + +   L+P  L
Sbjct: 11  GTLDHYLLQQVTPPFSISLGVVMAALLLERLLALFNLLASNGSSMKTFVSLLTDLVPHYL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +   +V+  M++N E+  +  +G S   + +P + +  +L +  F     I
Sbjct: 71  GLALPAAMCVSVFSVIRRMSQNHEIDALMASGVSMFRIARPFIVVGAILGVLSFSLYGFI 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
           +P  R   +     A  +    +L+ ++F     DL +   K +     +  +FI D+ +
Sbjct: 131 QPYARYNYRSALYFASHSGWAPHLQSHMFAAPSHDLMLTAEKVDDAGSRMFKVFIRDNSN 190

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESAN 234
               +   A+ G +    D D+  + L DG +       K  S++ F   T      +  
Sbjct: 191 HDLTRYITARKGYLYIPNDEDKIRLDLIDGTII-TDRHDKSPSVIHFDHTTELFSPHAQL 249

Query: 235 SSTIVLKANDQNLSFLLNPN--PNNPNYRPELLETYR-SEFHKRLTQWLFPVIFGLISIV 291
                 +   Q    L  P       +  P +  +Y  +E H RL + L      L++  
Sbjct: 250 DKLKAYRTRGQTERELTLPELYRGIRHGMPGIKHSYLVAELHFRLARTLAIPFIPLLACA 309

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A      ++   +    I+L            ++  +  +P  +  L   +F I  ++ 
Sbjct: 310 LAVMAKRQKRSLGLPIAAIALVGFDHTLQMGLSLVANVHMSPLLVIWLPTLVFGIGCVWA 369

Query: 352 LMIKKKYTKI 361
           L+ +    +I
Sbjct: 370 LIWRCGGIRI 379


>gi|120599782|ref|YP_964356.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|120559875|gb|ABM25802.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
          Length = 370

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 146/363 (40%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +   L ++ I      ++ +   S      ++++ + G  IP ++ +V 
Sbjct: 5   RYLIREVFKAQIAVLLVLLTIFISQHFVRILADASDGEFPASLIVTLIGLNIPALVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILVAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVVNMLFTGYLSLYVTPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT--- 181
                Q+  KAQ     + L +  F    +    + + +   +N L+ +F+    +    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNELEKVFVAQLPEPSDE 184

Query: 182 -QTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A++G +  D    Q + LN+G  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 TGVTNVVVAKNGRVLEDNMGAQQLQLNNGVRYQGSPRLKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   ++ LL         + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRKLSALTVTDLL---------KVESAEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
            VRQ K    +  ++ +  G F G      K  Q+   P Y+ + ++ L  +     L+ 
Sbjct: 293 NVRQGK-FAKMLPAVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGIFLLG 350

Query: 355 KKK 357
           K +
Sbjct: 351 KDR 353


>gi|113971161|ref|YP_734954.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117921444|ref|YP_870636.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
 gi|113885845|gb|ABI39897.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|117613776|gb|ABK49230.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
          Length = 370

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 144/363 (39%), Gaps = 25/363 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y++R + ++ +     ++ I      ++ +   S      +++  + G  +P ++ +V 
Sbjct: 5   RYLIREVLKAQIAVLFVLLTIFISQHFVRILADASDGEFPASLIATLIGLNLPYLVVLVL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M    E++I+   G S   + +  L LA++  +F       + P  
Sbjct: 65  PLSLFLGILMAHGRMYAENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYVAPWA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDTQT- 183
                Q+  KAQ     + L +  F    +    + + +   +N L  +F+    D    
Sbjct: 125 EEQQNQVLEKAQSEAGLAALVQGRFQASPNGRAVLFVERIGKDNDLDKVFVAQLPDPNDE 184

Query: 184 ---HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +  D+   Q + LNDG  ++ SP  KD  +++F  Y +Q +      
Sbjct: 185 IGLTNVVVAKGGRVLEDQNGSQQLQLNDGVRYQGSPQQKDYQMIEFGGYKMQIKEQQVDE 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K +   L+ L+         + E  E   +EFH RL   L   I  LI++  A  R 
Sbjct: 245 RRRKLSALPLTELM---------KVEGPEAV-AEFHWRLAIPLAIPIMTLIAVPLA--RV 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMI 354
            VRQ K    +  ++ +  G F G      K  Q+   P Y+ + ++ L  +    LL+ 
Sbjct: 293 NVRQGK-FAKMLPAVLLYLGYF-GLMVAGRKALQDGVIPQYLGMWWIHLSALIMGILLLG 350

Query: 355 KKK 357
           K +
Sbjct: 351 KDR 353


>gi|301168145|emb|CBW27733.1| putative permease [Bacteriovorax marinus SJ]
          Length = 382

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 135/383 (35%), Gaps = 27/383 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+       F MS  F V      Q+ + I +V S     +++ ++ G++  + 
Sbjct: 2   LKLTQRYLAVNFIAPFTMSLFFFVAFLLTFQLFRIIKIVISKGVEWSLVFELMGHIAISF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P      T   L  ++ ++E++ + + G ++  L  P L  A+ +   ++   N 
Sbjct: 62  IPMAVPLSCLFATIYTLNKLSDDSEIVAMRSFGMTKSKLFLPFLISALFIGACIYSLNNK 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           + P  ++  K    +       + ++E  FF     + +      +    +  +FI    
Sbjct: 122 VIPASKTQFKNTIIRLTSRGVLTDIKEGQFFTEVAGVTLFADTVIDKGRKMYNVFIQQEG 181

Query: 180 DTQ-THKIYYAQSGSIDLDRQ--------AIILNDGEV-HRKSPISKDISIMKFKSYTLQ 229
                 ++  A+ G++   +          + L DG +  R    +KD+  + FK Y   
Sbjct: 182 KGNLLEQVVTAKEGALIKIKNEEWSIPSVRLHLTDGTIVKRFKDTNKDLEKILFKEYDFP 241

Query: 230 TESANS-----------STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             S  +           +   L++  +  + L      +   R   +   + E   R+  
Sbjct: 242 LASGGAVNNFVTKDGMRTNAELRSEIKKATALAVKKKLSRKDRERSMAKTKLELWSRINT 301

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYI 336
            L   +F LI      K     + K  +    +L +  G +  F   +    +   P Y+
Sbjct: 302 PLLCFVFILIGFSLGIKHG---RGKSKNSSGRALFVLLGYYSLFFLGVSFARKGIVPAYV 358

Query: 337 PILYLFLFCISSIFLLMIKKKYT 359
            +    +   S       K  + 
Sbjct: 359 VVFAPTIILASIGAYFYKKLDWA 381


>gi|242279362|ref|YP_002991491.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122256|gb|ACS79952.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 386

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 128/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     I + +   F +S    + +  + ++LQ  +L    +     + K+  YL P  
Sbjct: 1   MKLLHRNIFKELISIFTLSISGFMGLILIGRLLQFRDLFMGQSLGALEMAKLFMYLCPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+TP    +        MN + E+  + + G S   L+   +   +L +   F     
Sbjct: 61  LLMLTPIATMLSIFLTFLRMNADNEITALKSGGLSLYRLLPAPIIFCLLCTGADFYFSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
                    +    +     +   ++  +F +    L       +  +  ++ +F+ D+ 
Sbjct: 121 GLSWGTENFRNALMEFARTQSQLAIQPGVFNKNFPGLVFYADGVDEKSGIMRSVFVRDNT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    A  G I  D +     I L +G+++++      +S++KFK+Y ++   AN 
Sbjct: 181 RKGMTATIVAPLGEIRTDPKMGRLLIHLENGKIYQQEKDQ--LSVLKFKNYDVRIPLANI 238

Query: 236 ----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFHKRLTQWLFPVIFGLI 288
                   L+  + +   L+  +             ++    E  KRL   +  ++ G+ 
Sbjct: 239 LKGYDVDELRPKEMSWKKLVRISRAGDRAGDIDPGFFKKVQVEVQKRLALPVACLVLGMF 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           ++  A     ++Q+  +        + + +              P     L    F I S
Sbjct: 299 AVPIACIFRGLKQQYGLIISMGLFLVYYTMLSLGVTFGESGVLTPVIGLWLPNITFAIIS 358

Query: 349 IFLL 352
           + LL
Sbjct: 359 VVLL 362


>gi|317486217|ref|ZP_07945051.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
 gi|316922516|gb|EFV43768.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
          Length = 385

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 117/363 (32%), Gaps = 12/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              +  I + I   F+++   ++ +  + + +Q   L       +   + + GY+ P  L
Sbjct: 3   SLLQRQIFKEIANLFVLAVGVLLTLILISRAVQMRELFLGLDLGILDTVLLFGYMTPLFL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    +        M+ + EL+ +   G +   ++   L  +++  +         
Sbjct: 63  MLVIPIACMLSVFLTFLRMSTDRELVALRAGGINIYQMLPAPLLFSVICMLLTLWVSLHW 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
                   ++   +         ++  +F     +L +   + NP +  +  + + D   
Sbjct: 123 LAWGMGHFRETILEIANTRARVVVQPGVFNTDFPNLVLFARQVNPGDGDMSQVLVDDRSH 182

Query: 181 TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYT----LQTES 232
            + H    A  G  D D +      +L DG+++  +   K  S++ F  Y     L +  
Sbjct: 183 PERHMTILAPEGRFDTDTERGELVFLLEDGKIY--TTDKKGASVLAFDEYKVRLPLDSLF 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPN-YRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            +     ++  + + S L +                   E HKR    +  +   L  + 
Sbjct: 241 KSLDLGDVRPREMSWSKLSSITREEALKVDANYANKLEVERHKRWAYPVACIALTLFVLP 300

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A     + ++  +        + + +              P     +   LF    I+ 
Sbjct: 301 LASAFEGLHRQTGLMLALAMFFVYYSLMSLGFSTGESGAIPPSIGLWVPNILFLCLGIYG 360

Query: 352 LMI 354
           L +
Sbjct: 361 LWL 363


>gi|258542689|ref|YP_003188122.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633767|dbj|BAH99742.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636826|dbj|BAI02795.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639879|dbj|BAI05841.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642935|dbj|BAI08890.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645990|dbj|BAI11938.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256649043|dbj|BAI14984.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256652030|dbj|BAI17964.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655087|dbj|BAI21014.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 399

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 142/359 (39%), Gaps = 18/359 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y++  +   FL++   ++    + ++L   NL+++    + I + +   L+P  L
Sbjct: 21  GTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYL 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +    V+  M++N E+  I+++G S + + +P + L ++L +  F+    I
Sbjct: 81  GLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGVLSFLLYGFI 140

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +     A        L+  +F      L I   K + + + L+ +FI D  +
Sbjct: 141 QPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSE 200

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            Q      A++G I +        I L +G +          S++ F   T     A S 
Sbjct: 201 QQERD-ITARNGHIRIGSDGETVEIDLTNGVIV-TDKGDGVPSLVTFDHSTRYLTHA-SH 257

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   ++   L +P       R +        RSE H R+ + L      L++   A
Sbjct: 258 ISPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEVHFRMARSLTVPFMPLLAASLA 317

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             R   RQR         L ++F +  GF +II              L ++  + +F++
Sbjct: 318 LMRK--RQRNN-----AGLPLAFIIMVGFDHIIQFGHSMVATKKASLLLIWGPAVVFIV 369


>gi|86608831|ref|YP_477593.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557373|gb|ABD02330.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 370

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 134/361 (37%), Gaps = 10/361 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y+   +    L        +  V ++      +   +     +L++    +P ++ 
Sbjct: 10  LLERYLFGEMLTPVLAGVAGGTLLLLVGRLFTLAERLVEGSVPPLTVLRLLVLDLPEMVV 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T   L  ++ N+E+  +   G     + +P+L + + +S+  F   N++ 
Sbjct: 70  LGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFSRIFRPLLLVGLAMSLSAFFISNVLL 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI---VDS 178
           P  +  I+Q+  +A LA   + ++ ++FF+ +D+L+  I + +P  NT+Q + I      
Sbjct: 130 PASKQQIRQIDQQALLAQATTPVQYDVFFKTEDNLWFFIRQVDPRLNTMQDVTILRVDPL 189

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
              +   +    +     +     L++G  H   P    I+   F    LQ     ++  
Sbjct: 190 PGGKYQLVEVTLAAQAVWNGLEWSLSEGATHLYGPTGLSIAEQTFHRKPLQVSQDLAALM 249

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +  ++ +L  L     +         +  R+EFH R +  L      LIS+      
Sbjct: 250 QPPVPPSELSLPEL-AERISRLARSNLNTQALRTEFHMRFSLPLASFFAVLISLPLGST- 307

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE-QNPYYIPILYLFLFCISSIFLLMIK 355
              R+  +   +   + + FG +   S      E          + F      I L+++ 
Sbjct: 308 -TARRVGRYGGVVFGILLVFGYYVVLSVSRSLGEVGALPPWAAAWSFNILFGGIGLVLLA 366

Query: 356 K 356
           +
Sbjct: 367 R 367


>gi|332876989|ref|ZP_08444742.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685097|gb|EGJ57941.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 491

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 118/293 (40%), Gaps = 19/293 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +FL +   +V I     I   I+ ++     L I+ K   Y IP +
Sbjct: 1   MKILDRYILTQFLTNFLGALSILVLIFVFHTIFTYIDELAGRGLELWIIGKFLIYFIPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +     +   N E   +  +G S + ++ P++ L  LLSI  F   N 
Sbjct: 61  IPIIMPLAVVISSIMTFGAFAENYEFAAMKASGISLMRVMLPLIVLMALLSIGTFFLANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV-D 177
           + P     +  L +          + E +F  + +D+ IK++K + +N   L  + I   
Sbjct: 121 VIPVAYREVYTLRSNIAKVKPAMAISEGVFSNIGEDISIKVAKKSGDNDQFLHNVLIHKK 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISK-------DISIMKFKS 225
           + D     + +A+ G +   +       +IL DG  +     +          + + F+ 
Sbjct: 181 TPDRVNRTVIFAKKGELKTAKTNSNFLQLILEDGTYYEDIKTNSYEAQERLPFAKVHFQK 240

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           Y +  + ++ + +         ++ +     N       +++ R++F + +T 
Sbjct: 241 YIINLDLSHLNNVDFNEKTDATTYRMM----NVGQLGYAIDSLRTDFKQNITD 289



 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           N+  YR +L+  +      +    +   +      VAA   A +R+     P+ +++ + 
Sbjct: 360 NDLEYRYKLMNLHILNLSDKFALTVACFVLF---FVAAPLGAFIRKGGIGLPLVVAMIVF 416

Query: 316 FGVFWGFSYIIHKIEQNPY------YIPILYLFLFCI 346
              ++   ++ +  E N        +IP L L  F +
Sbjct: 417 LAYYFIGMFMKNIAENNTINPALAPWIPALILLPFGV 453


>gi|299138457|ref|ZP_07031636.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
 gi|298599703|gb|EFI55862.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX8]
          Length = 785

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 137/365 (37%), Gaps = 16/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  YILR +    L+  +   FI ++  +L  + L      S   +L++ GYL+P  
Sbjct: 1   MRIFTRYILREVVGYALLGGVLFTFILFMRYLLALMELAVHGAASFADILRLIGYLLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L+ +  ++E+  +  +G   ++ ++ V  +A+L      ++   
Sbjct: 61  LTLTIPMAVLIGILLGLSRLAADSEITAMRASGMGVLSFVRIVSIVAVLSWAVGLVNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P+  + + Q  A+         ++  +F+    +  + +    P +     + +F+ D
Sbjct: 121 VAPRAAAALLQYEAQGASGEAAIQVQPRVFYEDFKNYVLYVQDVVPGSGAAEWKNVFLAD 180

Query: 178 SRDTQTHKIYYAQSGSID---LDRQAIILN--DGEVHRKSPISKD-ISIMKFKSYTLQTE 231
                T  I  +Q   +     D Q + +   DG  H  +  + +   I  F S  L  +
Sbjct: 181 LTQPATPHIITSQEALVTGTPGDPQTLRMQLSDGSRHDIAGNNPNQYDISTFASTELPIQ 240

Query: 232 SANSSTIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +        +   D  +  L         +     + Y  E H+R +     ++  L+ +
Sbjct: 241 TGQQEEDSHISRRDTPIQALSMGELWKFAHGSGDTQPYFIELHRRFSYPAACLVLMLVGV 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCIS 347
                    ++  K     I+L + F  +      S +  + + + +        +F ++
Sbjct: 301 ---PLGLSSKRGGKGTGFAITLVLVFAYYILSFVGSALARQGKLSAFAGVWGANIIFGVA 357

Query: 348 SIFLL 352
            + LL
Sbjct: 358 GVLLL 362



 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 124/372 (33%), Gaps = 25/372 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++    R+F +    +V +  +    + I  +      L  + +    LIP +L 
Sbjct: 420 ILDEYVMGSFLRNFGLVLTSLVGLFLIFTFFELIGDIIKYRTPLVTVGEYLLNLIPFILY 479

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            VTP C  +       +++R +EL  +  TG S   +  PVL +A+ LS  LF  +    
Sbjct: 480 NVTPLCSLVAVLITFGALSRTSELTAMKATGVSLYRIATPVLLVALALSAILFAFDETYL 539

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENL-------FFRLDDDLYIKISKYNPN-NTLQGIF 174
           P      + L +  +     ++L  +            +         ++ + N    + 
Sbjct: 540 PAANRKQEALRSVIKGKPAQTFLRADRKWMSGQTLGNKEPTRIFYYQFFDSDKNVFANLT 599

Query: 175 IVDSRDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           + + +          +A S   D      +  +G   R        S   F   +     
Sbjct: 600 VFEFQPGTFTLTRRIFATSARWDDSVNRWVFENG-WQRTFSGDAISSYQPFTLNSF--PE 656

Query: 233 ANSSTIVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
            +      K  D+    +    L+    +           R + ++++   L  ++  ++
Sbjct: 657 IHEQPGYFKKEDRQSQEMSYSELSKYIRDLKQSGFDTTRLRVQLNRKIAYPLMALVMAIL 716

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LF 344
           ++  A       +R  +  +   + ++   +W  + I   +        IL  +    LF
Sbjct: 717 AVPFALSTG---KRGGLAGMGAGIGVAIS-YWVIAAIFENLGNVNSLPSILAAWSPDILF 772

Query: 345 CISSIFLLMIKK 356
            +   +LL+   
Sbjct: 773 AMVGTYLLLRVP 784


>gi|300725026|ref|YP_003714352.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631569|emb|CBJ92278.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
          Length = 366

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 139/358 (38%), Gaps = 27/358 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N+++ + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVEGNIPANLVISLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+L SI    +     
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKSVLVKSALILALLTSILAAANVIWFI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR-- 179
           P+      Q+ A A+   + + + E  F    D  + + I      NT + +F+   R  
Sbjct: 122 PESSKYQAQVLADAKTNPSLAAIMEGQFKPSRDGNMVLYIGNV-KGNTFENVFLAQLRST 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + Q   + +A  G ++      Q  +L+ G  +  + + +D  I +F +Y        + 
Sbjct: 181 NDQRPSVIFADGGHMEERPNGNQVAVLHQGTRYEGTALLRDFRITEFTNYQAVIGHQRAD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   ++L  L +   ++           R+EFH RLT  L  +I  L+ +      
Sbjct: 241 IDNNKVEQKSLEQLWHATDDDS----------RAEFHWRLTLILSVLIMALMVVP--LSA 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFL 351
              RQ + +  +   L     ++  F  +   +  N       P+ +++L   S + L
Sbjct: 289 VNPRQGRILSMLPAML-----LYLIFFMLQSSLRSNGSKGKLDPMFWMWLVNGSYLAL 341


>gi|332704119|ref|ZP_08424207.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554268|gb|EGJ51312.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 396

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 138/359 (38%), Gaps = 20/359 (5%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           ++ + +  +F++    ++ +  + ++LQ   L    +  +  + ++  YL P  L ++ P
Sbjct: 14  HVFKELLLTFIICLGSLLTLILIGRMLQLKELFLGQSLGVMEIGRLFFYLSPFFLQLLMP 73

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        ++ + EL+ +   G S   L+   +    L  +              
Sbjct: 74  ISCMLAIFLTFLRISSDRELIALKAGGVSLYKLLPSPVLFCCLCCVANLAVAFWGISWGM 133

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHK 185
              +    +     T   ++   F      L I   +Y+P N  ++ IF+ DSR  +T  
Sbjct: 134 DNFRAEVLEFARNRTQIMIQPGTFNSDFPGLTIFAEQYDPGNKEMRLIFVQDSRGDETSA 193

Query: 186 IYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SANSST 237
              A+ G +  D++      +LNDG ++R +     +  +KF SY +  +          
Sbjct: 194 TIVAEKGRVVTDKERGRLQFLLNDGAIYRTAKDQ--VHTLKFVSYLVNLDIWKTFNAEQL 251

Query: 238 IVLKANDQNLSFL--LNPNPNNPNYRPE-LLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +  + ++  L  L  +P+    R E  +     E  KR T  +  ++ GL ++  A 
Sbjct: 252 SETRPREMSIMNLRRLAADPDLAKKRDEDYVRKVNVEIQKRYTLPVACLVLGLFALPFAC 311

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIF 350
               V+Q      + ++L +    +  +S  I   E     P+    L   +F +S+IF
Sbjct: 312 SFQGVKQ---YVGVLMALGMFIVYYSLYSISISLGESGFLAPWIGLWLPNVIFFVSAIF 367


>gi|225871810|ref|YP_002753264.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
 gi|225794430|gb|ACO34520.1| permease, YjgP/YjgQ family [Acidobacterium capsulatum ATCC 51196]
          Length = 772

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 123/362 (33%), Gaps = 14/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YILR I    L+      F+ ++  +   + L   ++ S+  + +    ++P +
Sbjct: 1   MRILTRYILREILSHGLIGGALFTFVLFMPNLGDLLELAVRNSSSMGAVGEAFLLMLPNI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V P    +     L+ +  ++E+  +  +G      +  V  +A        ++   
Sbjct: 61  FVVVIPMSVLVGILLGLSRLAADSEVTAMRASGIGVWRFVGIVSVIACAAWGLGLVNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P        L      A     ++  +F+    +  + +              +FI +
Sbjct: 121 LAPWSSRQTIHLEQSLANAQASYEVQPRVFYEDFKNYVLYVEDVKAGRGAARWGKVFIAN 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAII---LNDGEVHRKSP-ISKDISIMKFKSYTLQTESA 233
             +     I  A+S ++       I   L+DG  H+ SP    D ++  F    +   + 
Sbjct: 181 LTNPDAPSITTAESATVINGPNQTILMRLHDGAQHQLSPTEPGDYNLSTFTETDVPLRTG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +   +     D+ +  + N          +    +  E  KRL      ++  L+ +   
Sbjct: 241 SQEDVRFHRTDKRILAMTNREL-IERSHGKGGTWFFIELQKRLAYPTACLVLMLVGV--- 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIF 350
                 R+  K     I++++ F  ++  S       Q    P     +   LF    IF
Sbjct: 297 PLGMSSRRGGKSGGFVITIALVFIYYFLSSTGTALARQGKIPPLIGVWMANVLFAGCGIF 356

Query: 351 LL 352
           LL
Sbjct: 357 LL 358



 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 136/366 (37%), Gaps = 18/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R   R F+M  +  V +       + +  +  +  SL ++ +    L P+++ 
Sbjct: 408 LLDEYVIREFLRVFVMVLVSFVMLMLFFTFFELVGDIIRNHSSLLVVGEYLIDLTPSMIY 467

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TP    +    V   MNR++E+  +  TG S   ++ P++ +A L+++ LF       
Sbjct: 468 LITPLAVLIAVLVVFGLMNRSSEITAMKATGISLYRIVLPIMVIASLMAVGLFFFNEYYV 527

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLD---DDLYIKISKYNPN-NTLQG--I 173
           P+     + L  + +     +        +F + +     +      ++P+ NT     +
Sbjct: 528 PQANRKQQALRNEIKGLPAQTTSHPGEQWMFGKREPGHPGMIFYYQYFDPDTNTFLNLTV 587

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTES 232
           F  D +     K  +AQ  S D      IL DG      +   +        +     E+
Sbjct: 588 FEFDPQSFTLMKRTFAQMASWDQKDHRWILQDGWTRTFENHEIQSYQPFAVTTLPEMIET 647

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      + + +     L     + +         R +  ++L   L  ++  ++++  
Sbjct: 648 PHYFEKDFRQSTEMSFAQLRHYIADLSQSGFDTVRLRVQLDRKLADPLITLVMAVLAVPF 707

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISS 348
           A       +R  +  + +++ ++   +W  S     +         L  +    LF ++ 
Sbjct: 708 ALSMG---KRGSLAGVSVAIGVAIA-YWLISGTFEAMGDVSMLPAFLAAWSPDILFALAG 763

Query: 349 IFLLMI 354
            +LL+ 
Sbjct: 764 TYLLLR 769


>gi|311694207|gb|ADP97080.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
          Length = 369

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 135/357 (37%), Gaps = 25/357 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R I  S +     ++ +    + L+ ++  +  + S  +LL+I  +  P  
Sbjct: 1   MSIIFRYLIRQIMISMVAVSGILLLVFMSGRFLKYLDSAAQGSISAGVLLEIMAFRFPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   L+   L  ++ + I +      
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLSACGVSDKALLGKTLLGSLPVMIIVGAMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNT-LQGIFIVD- 177
           + P   + ++++  + + A  F  L    F               + +   LQG+FI + 
Sbjct: 121 VSPWGMNQVQEILNEQRKATEFEMLAPGRFQDFSSGGRVTYTEALSEDKRQLQGVFIAEY 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           + D +   I  A SGS  +D +     +IL +G     +    + +++ F++Y L+ E  
Sbjct: 181 APDGRGLTIITADSGSQLIDPETGSRFLILENGGRFEGAAGQLNYNVIDFEAYGLKIEGG 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + T   +    +   L+  +              R+  H R +  L   I  L+++   
Sbjct: 241 EAGTK-QREEGASTWSLMQSDRLED----------RALLHWRFSLPLIVPIVTLLAV--R 287

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH---KIEQNPYYIPILYLFLFCIS 347
             R   RQ +  H +   L   +  + G   +        + P ++ +L++    + 
Sbjct: 288 LSRVNPRQGRFFHLLPAMLV--YITYLGLLIVARDWLAAGKVPEWLGMLWVHALFLG 342


>gi|126667525|ref|ZP_01738495.1| predicted Permease [Marinobacter sp. ELB17]
 gi|126627951|gb|EAZ98578.1| predicted Permease [Marinobacter sp. ELB17]
          Length = 382

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 142/376 (37%), Gaps = 31/376 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     Y++R I  S +     ++ +    + L+ +   +    S  +L  +  Y  P  
Sbjct: 13  LTIIFRYLIRQIMISMIAVSTILLMVFMSGRFLKYLGNAAEGEISAGVLFSVMAYRFPGF 72

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G S   +++  L  ++ + + +      
Sbjct: 73  LELILPLGLFIGILLAYGRMYLESEMTVLLACGVSEGDILRQTLIGSLPVMLVVAAMSLY 132

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVD- 177
           + P     ++++  + + A  F  L    F        +       +    LQG+FI + 
Sbjct: 133 VSPWGMKQVEEIFNEQRKATEFELLAPGRFQDFTSGGRVTYTEGLSDDKRELQGVFIAEF 192

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            ++ +   I  A++G+  +D Q     +IL +G  +  +    D +  +F++Y L+  S 
Sbjct: 193 GKNGEGLTIITAETGTQLVDAQTGSRFLILKNGGRYAGNAGQLDYNTTEFEAYGLKIVSG 252

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S T  L+    +   L+    N+P          R+  H R +      +  L+++   
Sbjct: 253 KSGTKELEEG-LSTGQLM--KSNDPQQ--------RALLHWRFSLPFIVPVVTLLAV--R 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLF-LFCISSI 349
             R   RQ +  H +   L   +  + G   +      +   P +I + ++  LF    +
Sbjct: 300 LSRVNPRQGRFFHLLPAMLV--YITYLGLLIVARDALADGKVPEWIGMFWVHGLFLALGL 357

Query: 350 FL-----LMIKKKYTK 360
           +L      + K++  +
Sbjct: 358 WLQFGPAWLRKRRLQR 373


>gi|116624897|ref|YP_827053.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228059|gb|ABJ86768.1| permease YjgP/YjgQ family protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 777

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 138/377 (36%), Gaps = 32/377 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPT 59
           M+    YI R I  S ++  L   FI ++  +     L+  S+ +  N++L++    IP 
Sbjct: 1   MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPN 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VLP   PF   +     L  +  + E++ +   G S   +I PVL  A L       +  
Sbjct: 61  VLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATL 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVD 177
            + P        +  + +     + +   +F     +  + + +  P N    + +F+ D
Sbjct: 121 RLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVAD 180

Query: 178 SRDTQT-----------HKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMK 222
               +              I  A+       +  +R  + L +   H  S        + 
Sbjct: 181 VAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA 240

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
                    ++  S   L++       LL      P  +P+ +E Y+ E HKR    +  
Sbjct: 241 PTGQQ-ALTASPPSQTPLRSIGMGTRQLL----AYPRGKPDWVE-YQIELHKRFALPVAC 294

Query: 283 VIFGLISI-VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LY 340
           ++  ++ I +    R   R    ++ IF++    F  + GF  +I    Q    +P+ L+
Sbjct: 295 IMLAMVGIPLGIATRKGGRSAGYVNAIFVAF---FCYYMGFVSLIGLARQKTLPVPVALW 351

Query: 341 L---FLFCISSIFLLMI 354
           L     F +  IFL  +
Sbjct: 352 LPNAVFFVVGVIFLARL 368



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 129/369 (34%), Gaps = 19/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL       ++     V +  +    + IN +  +  SL I+ K   +L P ++ 
Sbjct: 414 LVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIY 473

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        M++  E+      G S   L  P+L  ++LLS  LF  +    
Sbjct: 474 QMLPVSILVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYV 533

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYI----KISKYNPNNTLQG--IFI 175
                    L  + +   T +YL     +    D L I            +T+    +F 
Sbjct: 534 ANANRIQDALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEASVFE 593

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           ++ +  +  +  +A+    +   +  +  DG        + D +  +F++ T +  +   
Sbjct: 594 LEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCD-AYARFQATTFRELTEPP 652

Query: 236 STI---VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   K    N   L +   +      E     +  F+++ +  LF +I  LI++  
Sbjct: 653 DYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPF 712

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISS 348
                LV  R  +  I IS+ I+   +     +  K+       P    +    +F ++ 
Sbjct: 713 ---GFLVGSRGAMTGIGISIGIAVA-YIALGQLFEKVGDVNLLSPATAAWAPDVVFALAG 768

Query: 349 IFLLMIKKK 357
            +L +  K 
Sbjct: 769 TYLFLRMKS 777


>gi|206901914|ref|YP_002251684.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
 gi|206741017|gb|ACI20075.1| putative permease, YjgP/YjgQ family [Dictyoglomus thermophilum
           H-6-12]
          Length = 362

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 134/367 (36%), Gaps = 16/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K++  YI   I   F +     + +  +  + +  + +     S   +LK+  Y IP++
Sbjct: 3   IKTYHKYIFSEILGPFFLGIFGFILVMLIQILYEFSDFIIMRRVSFETVLKLLYYKIPSL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P             + R+ E+  + ++G    TL    L  ++ LS  L+     
Sbjct: 63  FVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFFTLALAPLLFSVFLSFVLWFFTYS 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           + P+      +L  K           EN+FF  ++  Y  + K     N +Q + + D+ 
Sbjct: 123 LIPESNYRSNRLIQKYFFLNPAPVKGENIFFHDEEGRYYYVKKIIEDKNIMQNVLVFDTS 182

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +     IY A+      +R +++L +G VH     +  I   KF+ + +          
Sbjct: 183 SSNKYPIIYTAEEA--VWNRDSLVLKNGVVHHLGDDAFVIWEGKFEEFKINLPQDFMYIF 240

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +   S L                +Y  E + R+ Q +   IF L+        
Sbjct: 241 YRDRTPQEMPTSEL-RKRIEVYKKAGVSARSYLVENYLRIAQSVAVPIFALMGFSVILLT 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSI---FL 351
               +  ++     S+ I+F  ++GF+ I   + +   + P L  +L    + S+     
Sbjct: 300 G---RGGRLWGTAFSIIIAF-FYYGFNIIARSLGEYAVFSPFLSAWLPNITLGSLSLGVF 355

Query: 352 LMIKKKY 358
           +   +K+
Sbjct: 356 IWKVRKW 362


>gi|328952245|ref|YP_004369579.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452569|gb|AEB08398.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 401

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 134/367 (36%), Gaps = 20/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               ++ R     F +  L I  I ++ +I + + ++ +   SL  + K    L+P +L 
Sbjct: 16  IIYRHLWRECWDIFAVGLLAITVIVFMGRITRVMQMIITKGVSLIDIGKFCVLLLPYLLL 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +        ++ + E++ +  +G S + L+ P+L  A+++S           
Sbjct: 76  FTVPMAAMIAVLITFLRLSNDNEIMALKTSGVSVLQLLPPILAFALVISSTALFFSLYAT 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDT 181
           P     +++L ++         + E +F    + + + +++       ++G+F+ D RD 
Sbjct: 136 PWGNQEMRRLLSEVTKRRADLGIREQVFNNDFEHVVLFVNRVPTSGGPMEGVFLSDDRDP 195

Query: 182 QTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           Q      A    +  D    R  + L  G V R S  +     ++F++Y +  E      
Sbjct: 196 QVPITIAADKALLLFDLKSERLIMQLFQGRVLRLSEDATSFHSIEFETYQVPLELFKFVP 255

Query: 238 IVLKANDQNLSFLL----NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                ++  L  L        P   +Y          E ++R +    PV   ++ ++A 
Sbjct: 256 KPKSEDEMFLGELRQALAQHKPGTLDY-----NKLLVELNRRFS---LPVGACIMILIAM 307

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIF 350
                 + + +   + + L I    +   +      +     P   P L  F+F   +  
Sbjct: 308 PLGISTQIKGRAVGLIMGLVIFLLYYLLLTAAWRLGQHAIIPPGLAPWLPDFIFLFLAWG 367

Query: 351 LLMIKKK 357
           L    ++
Sbjct: 368 LWRRSRR 374


>gi|332535155|ref|ZP_08410964.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035425|gb|EGI71924.1| putative permease [Pseudoalteromonas haloplanktis ANT/505]
          Length = 370

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 137/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVGILGDASEGSIPAKLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  ++ L+I        I 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMYIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNN-TLQGIFIV---D 177
           P       QL  +A+     S L    F    +    + I         L  +F+    D
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIEKGGKELNKVFVAQLPD 181

Query: 178 SRDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           S      ++ YA+ G +       Q ++L DG+ +     +  +++ +F  Y++Q     
Sbjct: 182 SEKGNLARLVYAEQGVVVEAVNGEQQLVLTDGKRYETDGTTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL  N       PE +  ++     RL   L      L++++A  
Sbjct: 242 IEHQRRKLEAVPTNQLLAIN------TPESIAQWQ----WRLAIPL---SIPLLTLLAVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     +E  + P  I + ++ L  +    LL
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|326388616|ref|ZP_08210209.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206867|gb|EGD57691.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
          Length = 420

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 135/362 (37%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI R +    L   +    +  + ++L+  + V++    + I+ K+   L+P  
Sbjct: 4   LTAIDKYIARLVFVPMLSVFVIAASLLVLDKMLKLFDFVATQGGPVGIVFKMLANLMPEY 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    +        +  ++EL ++   G S   L++    LA +L+    +  + 
Sbjct: 64  ASLAIPLGLMLGILLAFRKLATSSELDVMRAVGLSYTRLLRVPYILAFVLAALNLLIVSY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           ++P  R   ++L  + +     + ++   F  L D   +++    +    LQGIF     
Sbjct: 124 VQPLSRYYYEELQFELRSGALGASIKVGEFNSLQDRTALRVESSRDDGRQLQGIFARVVG 183

Query: 180 DTQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                 +  A+ G       + D   + L DG++ ++SP  ++  ++ F S+ L  +   
Sbjct: 184 KDGQILVISAREGQFFANRENPDTVILRLTDGQIVQESPTIRNPRVLTFASHDLPIDLPK 243

Query: 235 SSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                 +     +  L  LL+   +  +  P++     +  H RL +     +  ++++ 
Sbjct: 244 IEQFRRRGDQDREYFLPELLHIGWSQ-DSTPQMRYQSLASLHFRLVEVAMMFLLPMLAMA 302

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A           +    I +     V      +      +P     L+   F  +++ +
Sbjct: 303 LAVPPKRSSSSLGVFVSIILVVAYHKVNEYGQDVSSLGRIDPTIA--LWGPFFIFAALIM 360

Query: 352 LM 353
            M
Sbjct: 361 WM 362


>gi|148270164|ref|YP_001244624.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281412494|ref|YP_003346573.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
 gi|147735708|gb|ABQ47048.1| permease YjgP/YjgQ family protein [Thermotoga petrophila RKU-1]
 gi|281373597|gb|ADA67159.1| permease YjgP/YjgQ family protein [Thermotoga naphthophila RKU-10]
          Length = 1061

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 126/356 (35%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 61  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +T+  + I   R
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIF--R 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TI 238
                 I  A+   +        L +G  +           + F    L           
Sbjct: 179 YGHEETIITAKR--VQKKGNDWYLFNGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLR 236

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V K   +     L                +  E H R    L P++  L+ +  +    L
Sbjct: 237 VGKTPREMTGRELKEKIEFFKKVGVKPSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   +P   P +   +F I    L ++
Sbjct: 297 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFIL 352


>gi|170288881|ref|YP_001739119.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
 gi|170176384|gb|ACB09436.1| permease YjgP/YjgQ family protein [Thermotoga sp. RQ2]
          Length = 1061

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 126/356 (35%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 1   MKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 61  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +T+  + I   R
Sbjct: 121 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIF--R 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TI 238
                 I  A+   +        L DG  +           + F    L           
Sbjct: 179 YGHEETIVTAKR--VQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLR 236

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V K   +     L                +  E H R    L P++  L+ +  +    L
Sbjct: 237 VGKTPREMTGRELKEKIEFFKKVGVKPSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   +P   P +   +F I    L ++
Sbjct: 297 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLDPVLAPWIPNIVFTIVGTLLFIL 352


>gi|309390182|gb|ADO78062.1| permease YjgP/YjgQ family protein [Halanaerobium praevalens DSM
           2228]
          Length = 366

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 127/371 (34%), Gaps = 20/371 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK+   YI + +   F         I     ++ +     +     +  L+K+    +P 
Sbjct: 1   MKTLNKYIYKELIAPFFFGVAAFTGIFIGTDLIFELTEFYTKWGVEVFTLIKLFFLKLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + T      ++ ++E+  +   G S + L+ P L L +L S        
Sbjct: 61  IIVLTFPMASLLGTIMAYNRLSGDSEITAMRAGGVSILALVMPALILGLLTSGVTIGISE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNPN-NTLQG 172
            + P      +Q+  +AQ        + +LF    D      D  +    +N +   ++ 
Sbjct: 121 FLVPNANYQAEQIMYQAQHGEQRPETQYDLFLTPMDSRTRRPDYMLYAHSFNGDSGIMKD 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--- 229
           + +    D +   +  A+S     D       DG ++     ++  + ++F +Y  +   
Sbjct: 181 VVVQSFEDGKPDSVLEAESAEWLSD--GWHFYDGIIYFLDRENRQPA-LEFSTYRSREEI 237

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                +  +    ++ N+  L N +      +       R EFH R +  L   IF L++
Sbjct: 238 HSPTQAGKLGKDIDEMNIREL-NEHIALKEEQGRQAYAERVEFHHRFSIPLASFIFALLA 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCI 346
                K    R         IS+ + F  +        +  +    P+    L   +  +
Sbjct: 297 APLGIKPQ--RSAGSATGFGISIIVIFIYYVLMTVGDALGSQGTIEPWLGAWLQNIVIFV 354

Query: 347 SSIFLLMIKKK 357
             + LL    +
Sbjct: 355 VGLALLFKSSR 365


>gi|329114705|ref|ZP_08243463.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
 gi|326695971|gb|EGE47654.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
          Length = 411

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 142/359 (39%), Gaps = 18/359 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y++  +   FL++   ++    + ++L   NL+++    + I + +   L+P  L
Sbjct: 33  GTLDRYLIAQVMPPFLVALSVVMIALILERLLVLFNLLAAGNNHIGIFIGLLAALLPHYL 92

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +    V+  M++N E+  I+++G S + + +P + L ++L I  F+    I
Sbjct: 93  GLAIPAALCVAVFTVIRRMSQNEEIDAINSSGLSLLRITRPYIQLGVILGILSFLLYGFI 152

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +     A        L+  +F      L I   K + + + L+ +FI D  +
Sbjct: 153 QPHARYDFRSTFYIASHTGWAPRLQPRMFASPSSQLTIVADKVSQSGSDLENVFIRDLSE 212

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            Q      A++G I    D +   I L  G +          S++ F   T     A S 
Sbjct: 213 QQERD-ITARNGHIRIGLDGETVEIDLTHGVIV-TDKGDGVPSLVTFDHSTRYLTHA-SH 269

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   ++   L +P       R +        RSE H R+ + L      L++   A
Sbjct: 270 VSPFRTRGEDERELTSPELVGRLIRHDPSISRPHMRSEVHFRMARSLTVPFIPLLAASLA 329

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             R   RQR         L ++F +  GF +II              L ++  S +F++
Sbjct: 330 LMRK--RQRNN-----AGLPLAFIIMVGFDHIIQFGHSMVATKKASLLLIWGPSLVFIV 381


>gi|310822424|ref|YP_003954782.1| hypothetical protein STAUR_5183 [Stigmatella aurantiaca DW4/3-1]
 gi|309395496|gb|ADO72955.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 371

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 136/367 (37%), Gaps = 11/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+ +     +   F+  + +V+Q L    ++  S  +L  + ++  YL P  
Sbjct: 1   MILLARYLLKELLAPLGVWVAFMFLLLFVMQFLLGTEVLLGSAVTLTDIGRLILYLTPHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F M     L  ++ + EL  +   G S + L+   + + +LL+  + +    
Sbjct: 61  LVKALPIAFLMAILLGLGRLSEDRELTALQALGISPVQLLLGPMAIGLLLAGLMALLAFT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
            +P   +++K+L  +         ++  +F+    DL +   + +        + + D R
Sbjct: 121 AQPWGLTSVKELVNEVIKKNVAGDVKSGVFYEDLSDLTLYAERVSREGGEWTHVLLHDDR 180

Query: 180 DTQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE---- 231
           +  +  +  AQ G +      +   ++L +GEVHR +  + D S+++F+   +       
Sbjct: 181 EPSSPLLVLAQRGRVSMREGDEALRLVLEEGEVHRATRSTADYSLLRFEQGEISVGLGGS 240

Query: 232 -SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +  S+    +  + +   L+                +    H RL   + P+ F L+  
Sbjct: 241 MNRKSNRFRSQKEEMSPGELIQAAEEAEKS-GGNPRPFLMAIHMRLGNAVAPLSFALLGT 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A  R    +            + + +   F  + ++ +        L   LF +  + 
Sbjct: 300 PLAIGRKQAGRAWGYLLTLSGYVLFYVLSRVFETLGNQEKLPMVLAAQLPNILFSVLGVV 359

Query: 351 LLMIKKK 357
            +    +
Sbjct: 360 AMWRVSR 366


>gi|117925962|ref|YP_866579.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
 gi|117609718|gb|ABK45173.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
          Length = 392

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 138/346 (39%), Gaps = 15/346 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     +   + + +  +  + QIL  ++L  + + S+++L K+   ++P  
Sbjct: 1   MKRLSRYLLTECALTSFTALVVLTTLVLLPQILMLVDLWVNKSVSVSVLGKMVLLIMPKF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  + +++EL++I  +G S + +  P+    ++++         
Sbjct: 61  LVASLPMALLVGILIGLGRLAQDSELIVIKASGISLLRIFYPLSVPIVVVTACSLYLNWF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P   +  + +        TFS ++   F      L I +++ +     L+G+ I D R
Sbjct: 121 LVPDSHTLFQNIRVALLSQNTFS-IKTQTFNNTIPGLTIYVNRQSHGGKLLEGLLIHDER 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT---ESA 233
           D        A+SG +        A++L +G  H+ +P +     + F +Y L+       
Sbjct: 180 DPDMPVTVIAKSGMLHRGSTGETALLLKEGSRHQMAPGNA-YRRLNFSTYDLELGIAFET 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            SS+        +++ L           P L      E+H+R    L  ++ G ++I  A
Sbjct: 239 ESSSGDRAIRSYSIADL---EQARIAQDPLLASEAEREWHRRFAIPLATLLLGFLAIPLA 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
            +    ++  +     +++S+   + +    +   + +     P +
Sbjct: 296 MQ--QNQRSGRGFGFIVAISV-LILQFILLTLGEAMAKRGLISPAM 338


>gi|291514071|emb|CBK63281.1| Predicted permeases [Alistipes shahii WAL 8301]
          Length = 500

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 102/239 (42%), Gaps = 6/239 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   ++F+  +  + + I+ +     S  I++++  Y +  +
Sbjct: 1   MKTIHRLVLKSYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    +     + ++  N ELL + + G S + + KP++ L  L+S+  F   N 
Sbjct: 61  IPMGLPLSMLLAAIMTMGNLGENYELLAMKSAGMSLVQITKPLIILVSLVSVGSFFIGNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P     +       +        ++ LFF   D++ I++S   P+ + L  + I D+R
Sbjct: 121 LVPNANKKLFSTLYDIRQQKQALEFQDGLFFNGIDNMSIRVSHQEPDTHLLHDVLIYDNR 180

Query: 180 DTQTH-KIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
               +     A SG I L        + L  GE + ++  S+  +    + +T   +  
Sbjct: 181 AANGNMNTIVADSGYIRLSDDKKYLLVTLFHGETYEQTRNSQWFTKSALRHHTFDLQKQ 239


>gi|313157781|gb|EFR57192.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
          Length = 500

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 104/239 (43%), Gaps = 6/239 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   ++F+  +  + + I+ +     S  I++++  Y +  +
Sbjct: 1   MKTIHKLVLKAYLGPMVLTFFIVMFVLMMNIVWRYIDELVGKGLSAGIIIELMTYFMANM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +     + ++  N ELL + + G S I + KP++ L  L+S+  F   N 
Sbjct: 61  IPLGLPLAMLLAAIMTMGNLGENYELLAMKSAGMSLIRITKPLIILVSLISVGSFFIGNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P     +  +    +        ++ LFF   D++ I++S+  P  + L  + I D+R
Sbjct: 121 LVPYANKKVFSILYDIRQQKQSLEFQDGLFFNGIDNMSIRVSRQEPETHLLHDVLIYDNR 180

Query: 180 DTQTH-KIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                     A SG I L        + L +GE + ++  S+  +  K + +  + +  
Sbjct: 181 AANGDMNTIVADSGYIRLSDDKKYLLVTLFNGETYEQTRSSQWFTQSKLRHHIFEKQDQ 239


>gi|110598486|ref|ZP_01386757.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
 gi|110339936|gb|EAT58440.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
          Length = 435

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 14/284 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + + I+F+  +       +       + + ++++       +
Sbjct: 1   MKIIDRYILKSHVGPFLFAFITILFVLILQFFASFADRFIGRGIAFSAIVELIILQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+  N+E+ ++  +G S   L+ PVL +A+LLS+ +    NI
Sbjct: 61  VGLAAPMAVLIAVVMAFGSLTTNSEMTVLRASGISLYRLMFPVLCVALLLSLCVERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           + P      K L      A     L+EN F  L D   I + +  + +  ++G+ I D  
Sbjct: 121 VLPLANYHAKSLMVDIARAKPAFGLKENAFSTLVDGYSILVREADDQSKEIRGVVIYDRS 180

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILN--DGEVHR-KSPISKDISIMKFKSYTLQTESAN 234
                 +  A+ G+I+   D Q +++   DGE+H+ K P  +    + FK Y    ES+ 
Sbjct: 181 RPNFTTMETAERGTIEFSGDFQYLVMTLLDGEIHQVKQPAHQVYRNLSFKKYRFVFESSG 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                  AN             +       L +   EF KR+  
Sbjct: 241 FGFARTSANRLRTG--------DSELSARELLSIGDEFQKRIAA 276



 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
           D+ L+ L +    + +    +   Y + +HK+ +  L   +F L+    A    L R+  
Sbjct: 316 DRQLAAL-DAERQSISANRSMYNRYMAAYHKKYSLSLACFVFVLVG---APLGVLARRGG 371

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLM 353
                 +SL + F ++W        I +     P+  ++L    IS+I +L+
Sbjct: 372 FGVGAGMSL-LFFVLYWMLMISGETIAERGLLDPMLSMWLGNIVISAIGILL 422


>gi|239993538|ref|ZP_04714062.1| permease YjgP/YjgQ [Alteromonas macleodii ATCC 27126]
          Length = 366

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 135/366 (36%), Gaps = 22/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILSS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       QL  KA+     S L    F +  +    I +   + N+ LQ +F+  ++  
Sbjct: 122 PLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDNNDKLQRVFLSQNQTD 181

Query: 182 QTH---KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +    ++ YAQ+G +  +      ++L +G  +      K    ++F  Y +Q     +
Sbjct: 182 DSEGDVRVVYAQTGEVANNPDGTRNLVLKEGVQYEGKQSEKAFRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    + L   +              R+E   R+   L       + ++A   
Sbjct: 242 DETRRKVSVLPTNELWEDDS----------IEARAELQWRIAIPL---SIPFLVLIAVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +E    P  + + ++    +    +L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGVMLI 348

Query: 354 IKKKYT 359
           ++ + T
Sbjct: 349 VRDRKT 354


>gi|157363796|ref|YP_001470563.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
 gi|157314400|gb|ABV33499.1| permease YjgP/YjgQ family protein [Thermotoga lettingae TMO]
          Length = 1102

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 133/356 (37%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI++      L+     V    V  + Q  +L+      + +LLK+  Y +P  
Sbjct: 1   MGILTKYIIKLSVGPMLIGLAGFVIFVSVEILYQLSDLIVRHRVGIFVLLKVLYYYLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +    VL+ ++ + EL+ +   G S   LI P L L+I LS   ++  + 
Sbjct: 61  VALGIPVGILLSIFWVLSQLSTDHELMALQVHGISLKVLIVPFLILSIALSFVTYVLSDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P        + +K        ++ EN+  ++D+  Y  + KY+  N  L+ + +    
Sbjct: 121 IVPLYNQKADSVISKYVYKRPEVFISENVLTKIDESQYFYVKKYDRQNGILEDVVLF-RN 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TI 238
           +    +I  A+   +  ++    + DG+++R          + F    L  +    S   
Sbjct: 180 EPSEEEIITAKK--VVKEKNKWFMYDGKMYRVDKDGVLRFDISFNKVELDLQEDIESIMR 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V K      S  L    +           +  E H R +  L PVI  LI I  +    L
Sbjct: 238 VGKTPKDMRSEELKERIDTFKKLGVDPAPWIVELHTRYSLSLGPVIIVLIGIPLSLMFNL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G       +  +   +P     +   +F ++   L ++
Sbjct: 298 KSKSWGVILTFVIVVLYQGSGAWLGAMGKERLVDPVTSAWIPNTIFGVTGALLFLL 353


>gi|322435367|ref|YP_004217579.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163094|gb|ADW68799.1| permease YjgP/YjgQ family protein [Acidobacterium sp. MP5ACTX9]
          Length = 813

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 129/347 (37%), Gaps = 19/347 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YILR +    L+  +   F+ +  ++ + + +V  ++ SL+ + ++  Y +P  
Sbjct: 1   MRLLTRYILREVLSHALLGGVLFTFVLFTSRLGKILEIVVRNSASLSDVARLIAYFLPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L+ +  ++E+  +  +G   +  ++ V  ++I        +   
Sbjct: 61  LIVTIPMAVLVGILLGLSRLAADSEITAMRASGMGALDFVRIVSLVSIGALALGLFNSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P+  + +  L    + +     +E  +F     ++ + +    P +     + +F+ D
Sbjct: 121 LAPRSAANLLALENSLKYSQASFEVEPRVFDEDFKNIVLYVQDVRPGSGAALWRHVFVAD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKD-ISIMKFKSYTLQTESA 233
             +    KI  A    +         + L DG  H+ SP   +  +I  F+   +  ++ 
Sbjct: 181 LTEPSAPKITTADQALVTSAGPGNLNLHLTDGAQHQISPTDANQYNISTFQVTDIPMQTG 240

Query: 234 NSSTIVLKANDQNLSFLLNPN---------PNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
                 L  +D  +  L  P             P +       Y+ E +KR +     ++
Sbjct: 241 AQEDAHLSRSDTPILALSLPELIQRGNQAAAPGPKHDVRAARLYKIELNKRFSYPFACLV 300

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
             L+ +         ++  K     +++ + F  ++  S  +    Q
Sbjct: 301 LMLVGV---PLGLSSKRGGKSTGFVLTILLVFVYYFLSSVGVALANQ 344



 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 128/396 (32%), Gaps = 52/396 (13%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI+R  G +F +       +  +    + I  +  +  +   +      LIP +L 
Sbjct: 424 ILDDYIMREFGATFALVLAAFSMVFLIFTFFELIGDIIRNRIAFVTVGDYLLNLIPYILY 483

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            VTP C  +       S+ + +E   +  +G S   ++ PVL L  +++  LF  +    
Sbjct: 484 NVTPLCVLVAVLVTFGSLAKTSEFTAMKASGVSLYRVVTPVLVLTAVIACSLFAFDEFYL 543

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENL-------------------FFRLDDDLY----- 158
           P+     + L +  +     ++L  +                    +  +   +      
Sbjct: 544 PQANRRQEALRSVIKGKPAQTFLRPDRQWISGQTVLDPISLAQSRSWAPIAPAVVHIGDT 603

Query: 159 -------IKISKYNPNNTL---QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                       ++P++       +F  D       +  +A+S   D +    I  +G  
Sbjct: 604 AKQPARIFYYQFFDPDHDAFANLTVFEFDPATFTLTRRIFAESAKWDSNVNQWIFENGWS 663

Query: 209 HRKSPISKDISIMKFKSYTL-QTESANSSTIVLKANDQNLSFL----LNPNPNNPNYRPE 263
              S    D     +K +TL      +      K  D+    +    L+   ++      
Sbjct: 664 RTFSGEVAD----TYKPFTLANFPEIHEQPQYFKKEDRQSQQMSFGELSSYISDLRQSGF 719

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG-VFWGF 322
                  + +++L      ++  +++I  A         K+      +++I    V+ G 
Sbjct: 720 NTMRLSVQLNRKLAYPAITLVMAILAIPFALS-----SGKRGGVTGFAIAILLAVVYLGV 774

Query: 323 SYIIHKIEQNPYYIPILYLF---LFCISSIFLLMIK 355
           S +   +       P+L  +   L    +    +++
Sbjct: 775 SSLFEAMGNVNTLPPMLAAWTPDLLFTFAGAYFLLR 810


>gi|189347121|ref|YP_001943650.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
 gi|189341268|gb|ACD90671.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
          Length = 403

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 143/399 (35%), Gaps = 44/399 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F+++ + IVF+  +  +    +       ++  + ++       +
Sbjct: 1   MKIIDRYILKSHIGPFILAFITIVFVLVLQFLAGFSDRFLGKGINIADIAELVMLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       +M  ++E+ +   +G S   L  PVL +A LLS+ +    N+
Sbjct: 61  VVFAVPMAVLVAVIMAYGTMTNSSEMTVFRASGLSLYRLAVPVLIVAALLSLLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P+     K L      A     L EN F    D   I + K +  +  ++G+ + D R
Sbjct: 121 VIPEANYRSKSLMMDIARAKPTFGLTENAFSSFIDGYSIFVRKTDEASKEIRGVVLYDLR 180

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILN--DGEVHRKSPIS--------KDISIMKFKSYT 227
           + ++  +  A+ G I    D + +++   +GE+H+                  + F++  
Sbjct: 181 NPKSRTMMSAERGVIRFSPDNRFLVMTLFNGEIHQIDQSDYHKYRAMRFGQHRLVFETTG 240

Query: 228 LQTESANSSTIVLKANDQNLSFL--------------------------LNPNPNNPNYR 261
                 ++  I    ++ +   L                          L          
Sbjct: 241 FGFSRTSNDRIRGNISELSAGELHVAASALQRGIVSAERRVASITDAGPLQREQERIEAD 300

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
                 Y  E++K+    +   +F L          L R+        ISL++ F ++W 
Sbjct: 301 KMQYNKYLIEYYKKYAISVACFVFAL---AGIPLGVLARRGGFGVGAGISLAL-FVLYWS 356

Query: 322 FSYIIHKIEQNPYYIPILYLFLF-CISSIFLLMIKKKYT 359
                 KI +     P+L ++    ++ +F L +  + +
Sbjct: 357 MIIGGEKIAERGLLDPVLSVWSANAVTGLFGLFLLHRMS 395


>gi|332991780|gb|AEF01835.1| permease YjgP/YjgQ [Alteromonas sp. SN2]
          Length = 366

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 134/366 (36%), Gaps = 22/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYITRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       QL  KA+     S +    F +  +    I +   + ++ L+ +F+  ++  
Sbjct: 122 PMAAENEYQLREKARNEAGLSAIIPGRFQQTGNAKAVIFVHDIDTDDQLRRVFLSQNKTE 181

Query: 182 QTHK---IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  + YAQ+G +  +      ++L  G  +      K    ++F  Y +Q     +
Sbjct: 182 NGENQVQVVYAQTGQVASNPDGTRNLVLKQGVQYEGQQSQKSYRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    + L            E +E  R+E   R+   L       + ++A   
Sbjct: 242 EEARRKVSVLPTTELWG---------DESIEA-RAELQWRIAIPL---SLPFLILIAVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +E  + P  + + ++    +     L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKIPPQLGLWWVHTIMLIIGVALI 348

Query: 354 IKKKYT 359
           ++ + T
Sbjct: 349 VRDRKT 354


>gi|220932597|ref|YP_002509505.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
 gi|219993907|gb|ACL70510.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
          Length = 1040

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 150/367 (40%), Gaps = 14/367 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +  ++YI++ +   FL+  + I+ +  +  +L+++ +L+      + ++LK+  Y +P +
Sbjct: 8   RIIDVYIIKEVLYPFLIG-VSIIGVIMLSGLLRQLSDLIIIKKIPVAVVLKLLLYQLPEI 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      T + +  +NR  E   +   G S   LI P+L L I++S   ++    
Sbjct: 67  IVQTFPIAILFATMSGMGRLNRENEFTALRMGGISLYRLILPLLILGIVISGMTYLLNEE 126

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I P  +   + +  K+ L      ++EN+FF+  D     + +++  +N ++ I +   +
Sbjct: 127 IVPWTKHRAQNIIRKSVLKEVPPDIKENVFFKGPDGRLFYVGRFDKEDNIMKKIVVYTFK 186

Query: 180 -DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
            D     I  A  G +  ++   +L  G +HR +         +F      + TE  N  
Sbjct: 187 GDNGYPLIVTANLGEVYKEK--WVLKKGFIHRYNGEGHLTMETRFDVMEIKINTEVHNFF 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 ++ +   L         ++   ++  +   ++H +L+  L  +IF LI    + 
Sbjct: 245 ADQKTPDEMSREEL---KKEIDLFQNSGIDVHSLLVDYHLKLSMPLAALIFILIGTPLSL 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R    I  I +     F +    S+       +P     L   +F I  I LL+ 
Sbjct: 302 TSKDSRSFSIIFTIVVVFLYYFVMSLSRSF-GRNGRLDPVLAAWLPNIIFSIIGITLLIW 360

Query: 355 KKKYTKI 361
           ++ +  +
Sbjct: 361 RESWRNL 367


>gi|15644481|ref|NP_229533.1| hypothetical protein TM1735 [Thermotoga maritima MSB8]
 gi|4982312|gb|AAD36800.1|AE001812_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 1074

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 126/356 (35%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+L+     FL+     +    +  + Q  +L+      +  L  +  Y +P  
Sbjct: 14  LKVLIKYLLKLSVVPFLIGLGGFIVFVSLEILYQLSDLIVRHRVGIEKLFLMLYYYLPYF 73

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +      + ++   EL+ I   G S+  LI P L L  LLSI +F   + 
Sbjct: 74  VAMGVPVGVLLAIFWTFSRLSEERELMAIQVHGISQKNLIVPFLILGALLSIAVFFLSDQ 133

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I P+ +S  ++  +K  L     ++ EN+  ++ DD Y  + KY+   +T+  + I   R
Sbjct: 134 IVPEYQSKAEEAMSKYVLKKPEVFVVENVISKIGDDQYFYVEKYDERTSTMWNVVIF--R 191

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TI 238
                 I  A+   +        L DG  +           + F    L           
Sbjct: 192 YGHEETIVTAKR--VQKKGNDWYLFDGNYYTVDKDGFLKLDVHFSEMKLDITEDIEKLLR 249

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V K   +     L                +  E H R    L P++  L+ +  +    L
Sbjct: 250 VGKTPKEMTGKELKEKIEFFKKVGVKPSPWVVELHSRYANSLTPIVIVLVGVPLSLLFQL 309

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + +  G     S +  +   NP   P +   +F I    L ++
Sbjct: 310 RSKSWGVIFTFVLVVLYQGSGAWLSAMGKENLLNPVLAPWIPNIVFTIVGTLLFIL 365


>gi|83644756|ref|YP_433191.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632799|gb|ABC28766.1| predicted Permease [Hahella chejuensis KCTC 2396]
          Length = 365

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 138/369 (37%), Gaps = 26/369 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R +  S L     ++ I    + ++ +   +    S ++L  I GY +P  
Sbjct: 1   MFIILRYLSRQLLVSMLAVAGVLLLIFMSGRFIKYLADAAQGKLSADVLFAIMGYRLPGF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M   +E+ ++   G +R  LIK  +  A+L+ + +      
Sbjct: 61  LELILPLGLFIGILLAYGRMYLESEMTVLFACGMNRFQLIKLTMVSALLVMLVVGAMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDS 178
           + P     + ++ +       F  L    F  L     +       +    +Q +FI + 
Sbjct: 121 VSPWGLRQVDEIFSDQSKITEFELLAPGRFQSLRSGERVTYTEGLSSDKREMQNVFIAER 180

Query: 179 -RDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             ++ +  +  A+ G+  +D       ++L++G  ++  P   D  ++++ +Y ++    
Sbjct: 181 DSESGSISVLAAKRGTQLVDPSTGSRFVVLHEGARYQGRPGEMDYRVIEYDAYGIKIAEP 240

Query: 234 NSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           ++     +   +  S L   + P +           R+    R++  L   I  L++I  
Sbjct: 241 DAEAEKTRDEAKPTSELWRSDNPKD-----------RALLQWRISIPLLVPIVALLAIP- 288

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSI 349
              R   RQ +  H +   L   +  + G      K    E+   +I + ++    ++  
Sbjct: 289 -LSRVNPRQGRFFHLLPAML--IYITYLGLLIASRKSLEKERISEWIGMWWVHGTFLAIA 345

Query: 350 FLLMIKKKY 358
            +LM    +
Sbjct: 346 LVLMFGPDW 354


>gi|332307892|ref|YP_004435743.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175221|gb|AEE24475.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 368

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 138/367 (37%), Gaps = 24/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S     L ++ I    + ++ ++  S+     +++L      +P +  
Sbjct: 2   LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S   + + +L LA+++++        + 
Sbjct: 62  LILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNT-LQGIFIVD--- 177
           P       QL  +A      + L    F +  +    I + +   ++  L+ +F+     
Sbjct: 122 PMSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHDT 181

Query: 178 SRDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + D+Q   + YA+ G    +    + ++L DG  +  +   KD  +++F  Y +Q     
Sbjct: 182 TTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     K +    + L N    +P+          +E   R    L       + I+A  
Sbjct: 242 AEQKRRKLSAYTTAQLFN----DPSIDA------IAELQWRFAIPL---SLFFLVIIAVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
             A   ++ +   +F +  + +  ++       K+ ++    P+  L+     I  I L 
Sbjct: 289 LSAADPRQGRFGKMFPA-LMLYLGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGVIGLA 347

Query: 353 MIKKKYT 359
           +I K   
Sbjct: 348 LIFKGRP 354


>gi|94968543|ref|YP_590591.1| YjgP/YjgQ family protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550593|gb|ABF40517.1| transporter, YjgP/YjgQ family [Candidatus Koribacter versatilis
           Ellin345]
          Length = 792

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 130/381 (34%), Gaps = 26/381 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    YIL  +     +      F+ ++  + + + L+  ++  L  + +I    +PT L
Sbjct: 4   RILTRYILGEVLSHGAIGLALFTFVIFMRDLGRLLELIVRNSAPLPSVAEIFFLTLPTAL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L+ ++ ++E+  + ++G   +  ++ V   ++ L I   ++   +
Sbjct: 64  TVTLPMAVLVGILIGLSRLSADSEVTAMRSSGLGSLFFVRIVSIFSVALWILALVNNLYV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVDS 178
            P+  + +  L  K + +     ++  +F+    +  + +      +     +G+F+ D 
Sbjct: 124 APRSAAALAHLQDKLKSSQASFEVQPRVFYEDFKNYVLYVEDSKSGSGSALWRGVFLADV 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKD-ISIMKFKSYTLQTESAN 234
                 KI  A+ G +  +      + L +G     +P       +  F    +  +   
Sbjct: 184 STPSQPKITMAERGVVVAEGPNSLHLHLENGTQQETNPKDPTQYQVSTFDQTDIPIQLPE 243

Query: 235 SSTIVLKA----NDQNLSFLLNPNPNNPNYRPELLET---------YRSEFHKRLTQWLF 281
           ++           + +   L     +        L           Y  EF +R+     
Sbjct: 244 TNDKPAPELVPVAELSTQELWRLAHSGGVSAGHYLGNSIAQVKARWYAVEFQRRIALPTA 303

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPI 338
            ++  L+ I         R+  K     +++ + F  +      +    Q    P     
Sbjct: 304 CLVLTLVGI---PLGLSSRRGGKSMGFVLTIILVFAYYVVSLIGVSLGRQGKLPPAVGVW 360

Query: 339 LYLFLFCISSIFLLMIKKKYT 359
           +   +F ++ I LL    +  
Sbjct: 361 MANVVFLVAGIMLLHRVDRAP 381



 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 138/365 (37%), Gaps = 19/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  ILR     F+M     V +A V    + +  +  +  S+ +L      L P+++ 
Sbjct: 432 LLDDMILRDFLLYFVMVLTTFVMLALVFTFFELLGDIVKNRVSVVMLGDYLLNLSPSLIY 491

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TP    +        M R+ E+  +  TG S   +  PV+ +A +++  LF+ + +  
Sbjct: 492 LMTPLSVLLAVLVTFGLMQRSNEITAMKATGISIYRVAFPVIAIAGVVAASLFVFDQLYI 551

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQG--IFIVDS 178
           PK     + L  + +     +YL  +  +    +  I   +      N   G  IF  D 
Sbjct: 552 PKANKRQETLRNEIKGKPPQTYLRPDRKWIFGSNNTIYYYEVYDADQNRFGGISIFQFDP 611

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +        YAQ    +   Q  +   G + + +  +    I +FK + ++T +  +   
Sbjct: 612 KTFALQSRIYAQHAHWEDGLQKWVFEQGWMRKLNGSA----IEEFKPFEVETIALAAEPP 667

Query: 239 VL------KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   ++ + +   LL    ++       +  +R + +K+L   +  ++  +++I  
Sbjct: 668 AYFKKEVRQSQEMDYQELLR-YIHDLQQSGFDVVRFRVQLYKKLAYPIITLVMAILAIPF 726

Query: 293 ADKRALVRQRKKIHPIFISLSISFG--VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  R   R+   +  +  ++ I+    V  G    +    Q P  +      L    +  
Sbjct: 727 SVYRQ--RRGGPLAGVATAIGIAILYWVSAGLFEAMGNANQLPALLAAWAPNLIFGFAAG 784

Query: 351 LLMIK 355
            ++++
Sbjct: 785 YMVLR 789


>gi|77361338|ref|YP_340913.1| hypothetical protein PSHAa2422 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876249|emb|CAI87471.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 370

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 137/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVSILGDASEGSIPAKLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  ++ L+I        + 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSVGLAILAAALTMHVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNN-TLQGIFIV---D 177
           P       QL  +A+     S L    F +  +    + I         L  +F+    D
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQLPD 181

Query: 178 SRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           S      ++ YA+ G +       Q ++L+DG+ +    ++  +++ +F  Y++Q     
Sbjct: 182 SEKDNLARLVYAEQGVVIEAQNGEQQLVLSDGKRYETDGLTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL  N      + +           R+   L      L++++A  
Sbjct: 242 IEHQRRKLEAIPTNQLLALNTPEATAQWQ----------WRIAIPL---SIPLLTLLAVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     +E  + P  I + ++ L  +    LL
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|288572984|ref|ZP_06391341.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568725|gb|EFC90282.1| permease YjgP/YjgQ family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 365

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 138/358 (38%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +  + +IL+ +G SFL   L    I     +L +I +++     SL+ +LK+  Y +P+V
Sbjct: 4   RILDRFILKELGSSFLFGVLTFTVILVAGDLLFKIADMLIEKGVSLSTVLKLFVYKLPSV 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      ++ N+E++ +  +G S   + +PVL  A L++I  F     
Sbjct: 64  VVLTLPMSCLLSTLLSFGRLSSNSEIVALKASGISFQRIARPVLLGASLVAISAFFMNET 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISK-YNPNNTLQGIFI 175
           + P      + +     +    + L E +F + +        I + +      +++ + +
Sbjct: 124 VVPIANRAAENILMYDVVKQKPTLLRERMFLKDESGGKLNRVIYVGRLRTRKGSMENVLV 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESA 233
            +  D +  +I  A  G  +       L+DG+        K   +  FK     L    A
Sbjct: 184 QEFDDGRLSRITTADEG--NWSDGVWTLSDGKAFSVDKEGKVGFLFGFKEQRLPLNLTPA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +   LK ++ +LS L          +   L      +H  +      ++  LI   AA
Sbjct: 242 QVARSSLKPDEMSLSQLREH-IEIMKAQGANLIPLWVSYHLHIAIPWASLVLALIG--AA 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R+        +S+ I F  +     +   + ++ +  P++  +L  +  +  
Sbjct: 299 LGVRPQRRGGMGVGFGLSVLIVFAYYVV-MSMGRALGESGHIPPLVAAWLANVVFLGF 355


>gi|332142603|ref|YP_004428341.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552625|gb|AEA99343.1| permease YjgP/YjgQ [Alteromonas macleodii str. 'Deep ecotype']
          Length = 366

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 134/366 (36%), Gaps = 22/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S L     ++ I   ++ ++ +   S       ++L   G   P +  
Sbjct: 2   LIFRYLLKETLKSQLAIFFILMAIFVTLRFVRVLGDASDGDIPAGLVLGFLGLYAPILSS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        +  ++E+ ++   G S   + + +LFL++L+ I          
Sbjct: 62  LVLPISAYLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLFLSVLIMIVTGAITLYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       QL  KA+     S L    F +  +    I +   + N+ LQ +F+  ++ +
Sbjct: 122 PLAAENEYQLREKARNEAGISALMPGRFQQTGNEKAVIFVHDVDKNDKLQRVFLSQNQTS 181

Query: 182 QTH---KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +    ++ YAQ+G +  +      ++L  G  +      K    ++F  Y +Q     +
Sbjct: 182 DSEGDVRVVYAQTGEVASNPDGTRNLVLKQGVQYEGIQSEKAYRKVEFDEYQIQIADKPA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +    S L   +              R+E   R+   L       + ++A   
Sbjct: 242 DETRRKVSVLPTSELWEDDS----------IEARAELQWRIAIPL---SIPFLILIAVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ +  G F         +E    P  + + ++    +     L+
Sbjct: 289 SAVDPRQGRFGKMFPAILLYLGYFLLLLASRRVLEDGKMPPQLGLWWVHTIMLIIGITLI 348

Query: 354 IKKKYT 359
           ++ + T
Sbjct: 349 VRDRKT 354


>gi|227114629|ref|ZP_03828285.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 371

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 139/364 (38%), Gaps = 30/364 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  +I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  + +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +++ L + + ++           R+EFH RLT  +  +I  L+ +       
Sbjct: 242 NNSDVQQMDMNTLWHSDAHDA----------RAEFHWRLTLIISVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL-----FCISSI 349
             RQ +      +S+  +  ++  F  +   +  N       P+++++L     F I+ +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVM 344

Query: 350 FLLM 353
             L 
Sbjct: 345 LNLW 348


>gi|315125733|ref|YP_004067736.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
 gi|315014247|gb|ADT67585.1| hypothetical protein PSM_A0635 [Pseudoalteromonas sp. SM9913]
          Length = 371

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 139/367 (37%), Gaps = 23/367 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   + +S +   L ++ I    + +  +   S  +    ++  +    +P +
Sbjct: 1   MLLIFRYLTTEVLKSQVAVFLTLMTIFLSQKFVVILGDASEGSIPAKLVFAMIALKLPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  ++E+ ++   G S   +++  L  +++L++   +    
Sbjct: 61  ASLILPLSLFLGIILAYSRIYADSEMTVLKACGVSEWYVVRITLISSVILALLAAVLTLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNN-TLQGIFIV-- 176
           + P       QL  +A+     S L    F +  +    + I         L  +F+   
Sbjct: 121 VAPWASEQEYQLKEQAKADAGLSALRAGRFQQTGNEKAVVFIHNIENGGKELNKVFVAQL 180

Query: 177 -DSRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            DS      ++ YA+ G +       Q ++L DG+ +     +  +++ +F  Y++Q   
Sbjct: 181 PDSEKGDLARLVYAEQGVVIEAQSGEQQLVLTDGKRYETDGEAPSLNLTEFDGYSVQIRE 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   K        L++ N       PE +  ++     RL   L      L++++A
Sbjct: 241 QEIEHQRRKLEAVPTRELMSIN------TPEAIAQWQ----WRLAIPL---SIPLLTLLA 287

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIF 350
                +  ++ K   +  ++S+  G F   +     +E  + P  I + ++ L  +    
Sbjct: 288 VPLSVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAVEDGKIPPSIGLWWIHLSALFIGS 347

Query: 351 LLMIKKK 357
           LL+I+ +
Sbjct: 348 LLIIRGR 354


>gi|227327171|ref|ZP_03831195.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 371

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 138/364 (37%), Gaps = 30/364 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  +I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTAIVATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  + +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFEHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L + + ++           R+EFH RLT  +  +I  ++ +       
Sbjct: 242 NNSDVQQMDMQTLWHSDAHDA----------RAEFHWRLTLIISVLIMAMMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL-----FCISSI 349
             RQ +      +S+  +  ++  F  +   +  N       P+++++L     F I+ +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLTYFGIAVM 344

Query: 350 FLLM 353
             L 
Sbjct: 345 LNLW 348


>gi|94987324|ref|YP_595257.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731573|emb|CAJ54936.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
          Length = 384

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 116/364 (31%), Gaps = 13/364 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  I R     F +    ++ +  + + +Q  +L       +  +L +  Y++P  L 
Sbjct: 4   LLQRQIFRESTYIFFLVVGALLTLIIINRAIQMRDLFIGLKLEILDVLILFSYMVPLFLI 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        MN + EL+ +  +G S   ++   L  +   ++          
Sbjct: 64  LVIPIACMLGVFLTFLRMNLDKELIALKASGISIYQMLPAPLAFSFFCTLLTLWISLFWI 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
                  K              ++  +F        +   + +P +  L  I + D    
Sbjct: 124 AWGMEQFKTTLLDIARTKVKISIQPGVFNNNFPGFVLFARQVDPLSGELHQILLEDRSQK 183

Query: 182 QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSY----TLQTESA 233
             H +  A +G+I+ +         L +G ++  S      S + F  Y     L T   
Sbjct: 184 DRHLVILAPTGTIETNPTKGELIFNLTNGNIYTMSLNKT--SFLSFDQYLVRIPLTTLLK 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           N +   L+  + +   L+     N     +       E HKR       +   + ++  A
Sbjct: 242 NINFNELRPKEMSWERLI--KEYNITNTMQYQNKISVELHKRWAYPAACIALTIFALPLA 299

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                + ++  +    I   I +G+              P     L   LF +  ++ + 
Sbjct: 300 IMFEGIHRQFGLILALIMFFIYYGLMSFGFSTGESGTIPPAIGLWLPNILFFLLGLYGIY 359

Query: 354 IKKK 357
           +  +
Sbjct: 360 LTSR 363


>gi|261819786|ref|YP_003257892.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
 gi|261603799|gb|ACX86285.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
          Length = 370

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 136/363 (37%), Gaps = 29/363 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+   I   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALVLAVFTGIIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A  G I  +   Q + L++G  +  + + +D  I  F +Y         +  
Sbjct: 182 NARPSVVVADRGHITNEEGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQAVTLN 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  ++  L N + ++           R+EFH RLT  L  +I  L+ +        
Sbjct: 242 NSDVQQMDMRTLWNSDAHDA----------RAEFHWRLTLILSVLIMALMVVP--LSVVN 289

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL-----FCISSIF 350
            RQ +      +S+  +  ++  F  +   +  N       P+++++L     F I+ + 
Sbjct: 290 PRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAIML 344

Query: 351 LLM 353
            L 
Sbjct: 345 NLW 347


>gi|325295268|ref|YP_004281782.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065716|gb|ADY73723.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 361

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 128/356 (35%), Gaps = 19/356 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    YI   I R F+++    +F+  + +       V     S+   L +    IP  
Sbjct: 3   IKIIHRYIFLEILRVFILTLGLFIFVILMDRASSIAETVFGQGVSILNFLSVLVKGIPAF 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P  F +    V   +  N EL+ + + G S   L KPV+FL +  SI  F S   
Sbjct: 63  LGMTIPMAFILSVLIVFIQLGNNNELVALKSCGVSTKELSKPVIFLGVAFSILSFYSLMF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK    +K+   +         +    F      +   + K  P       F+V    
Sbjct: 123 LMPKSNVAMKKEIEELVKKKITMSISPKNFSSNFPGVTFYVEKLYPEKGYLENFMVSLVK 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKS-PISKDISIMKFKSYTLQTESANSST 237
                  +A+ G +  ++  + L   DG     +    ++  ++ FK+YT++        
Sbjct: 183 KDELITIFAKKGMLRTEKDTVFLDIQDGTGEFINWKKPENFKVLNFKNYTVKLYRFTKRE 242

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  + L  L++ N              + E  KRL   L P+I G+++   A    
Sbjct: 243 KFESIRYKTLPELISSN----------RIEAKVELFKRLGLSLAPLIVGILAFSLAL--- 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI--PILYLFLFCISSIFL 351
            +  R  I    +   +   V++    +  KI  N   +  P+L    F +   FL
Sbjct: 290 -IIPRSSIGIGILLSLLIIVVYYILYTLTKKIALNTGIVLLPLLTDLFFFVLGGFL 344


>gi|94495766|ref|ZP_01302346.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425154|gb|EAT10175.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 402

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 140/361 (38%), Gaps = 16/361 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIAVPMLGTLVIAAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMLPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALINFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFI-VDSRDTQ 182
            R   + L  + +     + ++   F  L   + ++I    +    LQGIF+   SRD Q
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSRDQGRNLQGIFVRATSRDGQ 185

Query: 183 THKIYYAQSGSIDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +  +  AQ   +  D   +I   L DG +   +P  K   I+ F S+ L  +     +  
Sbjct: 186 SVAVTAAQGTFLATDDPDVIIFRLRDGVLVNDAPKYKTPRILSFSSHDLPIDLPQIESFR 245

Query: 240 LKANDQ--NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + ND+   +  L+    N     P+L    R+ FH R+ +     +  ++ +  A    
Sbjct: 246 GRDNDREKTIPELVVIGKNQ-ATPPKLRNEVRANFHFRMVE-----VVFMLLLPLAALAF 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +  ++    + + LSI F V +                  I  L+      S + L M 
Sbjct: 300 AIPPKRSTSALGVFLSIVFIVTYHKVNQYGESVGALGKIDPIIALWGPFLLASGLVLWMY 359

Query: 355 K 355
            
Sbjct: 360 H 360


>gi|78188415|ref|YP_378753.1| hypothetical protein Cag_0437 [Chlorobium chlorochromatii CaD3]
 gi|78170614|gb|ABB27710.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 443

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 112/333 (33%), Gaps = 24/333 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL+     F  + + IV +  +               +   ++++       +
Sbjct: 1   MTILDRYILKKQIAPFFFAFITIVALLQLQFFSTFAERFIGKGITFVAIVELLALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       ++   +E+ +   +G S   ++ PV+ +++LLS  +    N+
Sbjct: 61  VSFALPMAVLVAVVMSFGTLTTTSEMTVCRASGISLYRVMVPVIVVSLLLSFTVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L A+   +     L E  F  L D   + +   +     L+G+ I D  
Sbjct: 121 LLPQANYQAKSLMAEIARSKPAFGLTEQAFSTLVDGYSMYVRSSDERHGELRGVVIHDMT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIMKFKSYTLQTESAN 234
             +      A  G ++         + L +G +H+ + P       M F+ Y    ES+ 
Sbjct: 181 RPEYRTTITATRGRVEFTPDYQYLVMTLRNGAIHQLQQPEKSGYRSMNFERYRFVFESSL 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI---- 290
           S       N             N     EL      EF +R    L  V   L+++    
Sbjct: 241 SGFTPSSGNRMR-------ADANELSAGEL-HAIGLEFRRREAVALLHVQAPLVALERLA 292

Query: 291 ------VAADKRALVRQRKKIHPIFISLSISFG 317
                   A     +RQ         +L++  G
Sbjct: 293 ANTDNSKMAASPPTLRQETSAIAATKALAVIEG 325



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
             L   Y + +HK+ +  L  V+F L+    A    L R+        ISL + F ++W 
Sbjct: 341 RTLYNRYMAAYHKKYSLSLACVVFVLVG---APLGVLARRGGFGVGAAISL-LFFVLYWM 396

Query: 322 FSYIIHKIEQNPYYIPILYLFL 343
                 K+ +     P++ +++
Sbjct: 397 LMISGEKMAERGVLDPMIAMWM 418


>gi|317493503|ref|ZP_07951924.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918446|gb|EFV39784.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 356

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 145/363 (39%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+  I R  ++   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLIEHYIMAEIRRLVVIIVGFLIFIFASYSAQRYLTEAANGTLALEVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  +  ++E+  I   G S I L K V+ LAI LSI + +    
Sbjct: 61  LEMLLPVGLYVSVGVALGQLYTDSEITAISAIGASPIRLYKAVMLLAIPLSILVTLMSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L  S+L   +F   D    I   + NP+ N L  + I  + 
Sbjct: 121 ARPWAYAQIYQLEQQSQSELDVSHLRAKMFNINDSGRMILSEEINPDSNHLTDVLIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +Y A++  +        ++IL+ G  +       D S   +++ TL  +  N S
Sbjct: 180 SGNKTSVYRAKTVDVTNPSPITPSVILHSGTGYTLRHQGTDDSERVYRNLTLDLKPLNLS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +     ++ + + +P +            +E   R ++ +   +  L++I     R
Sbjct: 240 VDAKRKAKSVIALIRSADPAD-----------YAEVQWRESRGVNAFLMALLAIS--LSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + +++  +   + G               P ++L    +    L++I +
Sbjct: 287 VKPRQGRFSTLLPLTILFTVIFYGGNVCRSLVASGYLSVTPGVWLVPMLMFIGVLVLIAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|54307698|ref|YP_128718.1| putative permease [Photobacterium profundum SS9]
 gi|46912121|emb|CAG18916.1| putative permease [Photobacterium profundum SS9]
          Length = 366

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 127/345 (36%), Gaps = 22/345 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + ++ +   +  +   +++L + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATDGSIPGDLILTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVD--S 178
           P       Q+  + +  +    L +  F    D    + ++      + L+ +F+    +
Sbjct: 122 PWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIVA 181

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           RDT    +  A+ G +   D  RQ + L DG  +   P   D S+ +F++Y         
Sbjct: 182 RDTMRPSVMVAERGYVSELDDGRQVLDLKDGTRYEGVPTRLDYSVTEFENYQALIGQRAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+  +              R+EF  R++     +   L+++V    
Sbjct: 242 REKNRDWDALPTPTLMQHSE----------LAARAEFQWRISM-FLCI--PLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPI 338
            ++  ++ +   +F ++ I    F   S     +E    P YI +
Sbjct: 289 SSVNPRQGRFAKLFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGL 333


>gi|90411866|ref|ZP_01219874.1| putative permease [Photobacterium profundum 3TCK]
 gi|90327124|gb|EAS43496.1| putative permease [Photobacterium profundum 3TCK]
          Length = 366

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 132/357 (36%), Gaps = 24/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + ++ +   +  +   +++L + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFIRILADATDGSIPGDLILTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIQAALLLAMITGSVAAFNSLWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVD--S 178
           P       Q+  + +  +    L +  F    D    + ++      + L+ +F+    +
Sbjct: 122 PWSSEQETQVMERVESDVGLDLLVKGQFQPAPDGKGVVFVNDITDKGSKLEKVFVAQIVA 181

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           RDT    +  A+ G +   D  RQ + L DG  +   P   D SI +F+ Y         
Sbjct: 182 RDTMRPSVMVAERGYVSELDDGRQILDLKDGTRYEGVPTRLDYSITEFEDYQALIGQRAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+  +              R+EF  R++     +   L+++V    
Sbjct: 242 REKNRDWDALPTPTLMQHSE----------LAARAEFQWRVSM-FLCI--PLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPI--LYLFLFCISS 348
            ++  ++ +   +F ++ I    F   S     +E    P YI +  + + +F ++ 
Sbjct: 289 SSVNPRQGRFAKLFPAVLIYLVYFLAISAAKSAVEDGSLPSYIGLWSINVVMFVVAI 345


>gi|109899862|ref|YP_663117.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
 gi|109702143|gb|ABG42063.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
          Length = 368

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 135/367 (36%), Gaps = 24/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S     L ++ I    + ++ ++  S+     +++L      +P +  
Sbjct: 2   LIFRYLVKETVKSQTAVFLVLMAIFITNKFVRVLSEASNGDIPASLVLGFLALSMPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S   + + +L LA+++++        I 
Sbjct: 62  LILPLSLFLGIMLAHGRLYVDSEMTVMRACGISEWYVTRVMLVLAVIMALITGAMTLWIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNT-LQGIFIVD--- 177
           P       QL  +A      + L    F +  +    I + +   ++  L+ +F+     
Sbjct: 122 PLSVEREYQLEEQAGADTGLTTLIPGRFQQTANEKAVIFVHEIGNDSEPLKRVFMAQHDT 181

Query: 178 SRDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + D+Q   + YA+ G    +    + ++L DG  +  +   KD  +++F  Y +Q     
Sbjct: 182 TTDSQNVHLVYAKQGGLRELPDGSETLVLGDGIQYEGTLGEKDYRVVEFGEYQIQIAEQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     K +      L   +  +            +E   R    L       + I+A  
Sbjct: 242 AEQKRRKLSAYTTMQLFEDSSIDA----------IAELQWRFAIPL---SLFFLVIIAVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
             A   ++ +   +F +  + +  ++       K+ ++    P+  L+     I  I + 
Sbjct: 289 LSAADPRQGRFGKMFPA-LMLYLGYFLLLLAGRKVLEDGKIPPMLGLWWVHAVIGIIGMT 347

Query: 353 MIKKKYT 359
           +I K   
Sbjct: 348 LIFKGRP 354


>gi|308050966|ref|YP_003914532.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
 gi|307633156|gb|ADN77458.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
          Length = 372

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 134/366 (36%), Gaps = 23/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   R+ +     +V I    Q ++ +   +       ++  +    +P +L 
Sbjct: 2   IIFRYLLKEALRAQIAVLAVLVTIFISQQFVRILADAAEGQFPGKLVATLLALNMPELLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M  ++E+ ++   G S   + +  L LA ++++   I+   + 
Sbjct: 62  LILPLSLFLGVMMAHGRMYADSEMTVLHAVGVSEWYVTRVTLVLAFIMALISGITAIYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  + T  Q+  KA+     + L +  F R  +   +   +      L  +F+    +  
Sbjct: 122 PWAKETEYQVLEKAESEAGLAALVQGRFQRAANGKAVIYVEGLSKGKLDTVFVAQLPEKD 181

Query: 183 TH----KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  +  A+ G I         + L DG         K+ ++++F  Y ++ +S  +
Sbjct: 182 DPEGETALVLAEGGRIVEGSDGSQRLQLLDGNRFSGVLNQKEYNLVQFGEYEMEIKSQEA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    K +  ++S L            E      +E H RL     P+   L++++A   
Sbjct: 242 AHKRRKLSAYSMSQLF----------EEGSPHAWAEIHWRLAV---PIALPLLTLIAVPM 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLM 353
             +  ++ K   +  ++ I  G F G      K  +N    P   L+        I +++
Sbjct: 289 SRVNVRQGKFAKMLPAILIYLGYF-GLLMAGRKAIENGAIPPQLGLWWIHLAALVIGIVL 347

Query: 354 IKKKYT 359
           I +   
Sbjct: 348 IGRGRP 353


>gi|82701536|ref|YP_411102.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
 gi|82409601|gb|ABB73710.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
          Length = 358

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 137/360 (38%), Gaps = 26/360 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R +   F++  + +  +     + + +    + +  L  +L++        
Sbjct: 1   MKIIERYITRELLIPFMVVTVILATLFASFSMARFLAGAVTDSLGLIPVLRLVFLKTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  ++R+ E++++ + G S   +I  VL +AI + +   +    
Sbjct: 61  LEVLMPIALYVAVIMGLGRLHRDQEIVVLRSAGVSEHRIIYAVLIVAIPMGLISGLFSIF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNPNNTLQGIFIVDSR 179
             P        L+A+A+  L         F+        I +   + +    G       
Sbjct: 121 ARPWAYEESYLLNAQAEAELNTDRFRAGRFYGSEKKGRVIYVQAKDSSGKQMGEVFHYLN 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              + +I  A+       +   R  I L DG ++R S   K  ++++F+     T+S N 
Sbjct: 181 KHDSSEIILAKKAHQPELVFGQRPQIHLLDGSIYRLSHTGKGDTVVQFEKLVYFTDSGNV 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +    KA   + + L+  +               +E   RL++ L  ++  LI++     
Sbjct: 241 TDYRRKAA--STAALMQSDQPRDT----------AELQWRLSRPLATILLALIAVPF--S 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIH------KIEQNPYYIPILYLFLFCISSI 349
           RA  RQ K     +++ ++ F +++  S +         I + P    +  + L    S+
Sbjct: 287 RASPRQTKGDKTYYLA-ALVFAIYYILSGLAQTWVEQGTIGRVPGVWWLYAVMLLFAISL 345


>gi|196228189|ref|ZP_03127056.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
 gi|196227592|gb|EDY22095.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
          Length = 380

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 137/374 (36%), Gaps = 20/374 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR     FLM     + I  +I +    N    +      +L+     +PTV
Sbjct: 1   MNILDRYVLRSFIEPFLMCLAGFIAIWLIIDVSDNFNDFIEAHARFRTILEYYVTQLPTV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L+ M+R  EL+     G S + ++ P++ + +L++ F F     
Sbjct: 61  ILMSLPVGLMLGLLFSLSRMSRTNELISQLTAGRSVVRVLAPLIGVGVLMTGFCFWLNWE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEE---NLFFRLDDDLYIKISKY---NPNNTLQGIF 174
             P   S  K    K +     + +E    +LF    DD    + K         +QG+ 
Sbjct: 121 HAPHAESIKKDAMQKIKRGKRATDVEPVLAHLFRDRRDDRTWYVRKLIFQPGEERMQGVH 180

Query: 175 IVDSRDTQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-YTLQTES 232
           +    +T    K +YA S   D  +Q   L  G++    P         F   + +  + 
Sbjct: 181 VTQQDETGHILKKWYASSVYYDPAKQEWKLEKGKIVTFKPDGDVEDQDLFLRGFRIIKDW 240

Query: 233 ANS----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
             +    ++  L     ++  L      N ++    L  YR+    R       +   L 
Sbjct: 241 PETPWRVASTELNPGGLSVHELHEYLKYNSDFPAVQLAPYRANLADRYALPFQCL---LA 297

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLFLFC 345
             +AA    +  +R  I  +  ++ +   +    S+ +     +  +P + P  ++ +  
Sbjct: 298 VFLAAPLGIVYNRRGVIGGVTAAMVLLVLMIMSHSFFVMLGKGMRMDPNFSP--WVPVIG 355

Query: 346 ISSIFLLMIKKKYT 359
           +  I L+++  + T
Sbjct: 356 LGIIGLVLMYYRST 369


>gi|149190546|ref|ZP_01868816.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
 gi|148835670|gb|EDL52637.1| hypothetical protein VSAK1_13861 [Vibrio shilonii AK1]
          Length = 371

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 129/361 (35%), Gaps = 25/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L   L +  + +  Q +Q +   S       +++ ++G  +PT+  
Sbjct: 2   IIVRYLIRETVKSQLAIFLVLFLVFFSRQFIQVLADASDGDIPAGLIMTLAGISMPTMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  ++LA+L +     +   + 
Sbjct: 62  LMFPLSIYIGILVTFGRLYAESEITVMNATGIGNKFLIRAAMYLAVLTTSLAAFNAFWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    Q+  +     +   L+   F R  D   +       +  L  +F+     RD
Sbjct: 122 PWTQEQEVQIRERLASENSVELLQTGSFQRTPDGSSVVFIDSIKDKKLTNVFVAQLNPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    +  A+SG    +   RQ I L DG  +   P   +  + +F  Y           
Sbjct: 182 SVLPSVISAKSGDVKELSDGRQVIALYDGVRYEGVPTRLEYMVTEFTDYEGVIGQREVQQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       LL NP+P             ++E H R++     V   L++++     
Sbjct: 242 RGRSWMAIPTMELLGNPDP-----------KAQAELHWRIS---LVVCIPLLTMLVVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-----YIPILYLFLFCISSIFL 351
           A+  ++ K   +  ++   F  F   S +   +E   +       P+ +  L     +  
Sbjct: 288 AVNPRQSKFAKMGPAILAYFAYFMAISAMKSALEDGAFPSYIGLWPVNFALLLAAIGVNT 347

Query: 352 L 352
            
Sbjct: 348 W 348


>gi|71279918|ref|YP_267491.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71145658|gb|AAZ26131.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 388

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 136/370 (36%), Gaps = 22/370 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+ + ++ L     ++ I    + ++ +   S  +    +++      IP +  
Sbjct: 2   IIFRYLLKEVAKTQLAVFFVLMTIFISQKFVRVLGDASEGSIPGQLVMTFIALKIPDLAG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        +  ++E+ ++   G S   +++  L LA++ +IF  I    + 
Sbjct: 62  FILPLSLFLGVLLAYGRIYADSEMTVLHACGVSEWYVVRVTLVLAVITAIFTGIFTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKI-SKYNPNNTLQGIFIVDSRD 180
           P       ++  +       S L    F +  + D  + I  K    N+   +F+     
Sbjct: 122 PLASEYQYKVKEELAADSGLSALVSGRFQQTGNQDAVVFIHDKDRETNSFNKVFVAQLPK 181

Query: 181 TQ-------THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQT 230
                       + YA++G +  D      ++L DG  + +   SK+   + F  Y +Q 
Sbjct: 182 GDNVDASIINSSLVYAKTGKVFEDDTGSQQLVLGDGIRYHRDIESKEFQSVAFNKYYIQI 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +         K +  +   L N  P      PEL   YR+    R+   L  +I   +  
Sbjct: 242 KDQEVEHQHRKLSAISTLELYNNMP------PELESAYRATIQWRIAFPLACII---LIF 292

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSI 349
           +A     +  ++ K   +  +L +  G     + +   IE+N     + L+        I
Sbjct: 293 IAVPLSVVNPRQGKFAKMLPALMLFLGYLLLLTSMRSAIEKNAIPSVVGLWPIHISALFI 352

Query: 350 FLLMIKKKYT 359
            ++++ K+ +
Sbjct: 353 GMMLLMKERS 362


>gi|320107369|ref|YP_004182959.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
 gi|319925890|gb|ADV82965.1| permease YjgP/YjgQ family protein [Terriglobus saanensis SP1PR4]
          Length = 782

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 137/363 (37%), Gaps = 15/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           M+    YILR +    ++      F+ ++ + L   + L    + + N + +I  Y +P 
Sbjct: 1   MRILTRYILREVVSHAMLGGALFTFVLFMQRDLGHILELAVRGSATPNDVGRILLYSLPA 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P    +     L  ++ ++E+  +  +G   +  ++ V    ++  +   ++  
Sbjct: 61  TLTFTIPMTVLVGILLGLGRLSADSEVTAMRASGFGVMQFVRVVSMSTVVALLVGLVNSL 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIV 176
            I PK  +++ +L    + +     ++  +F+    +  + +    P+      + +F+ 
Sbjct: 121 YIAPKSTASLLRLENDLKSSQASFEVQPRVFYEDFKNYVLYVQDTQPSQGATIWKHVFLA 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKD-ISIMKFKSYTLQTES 232
           D     T  I  A    + + +Q    +   DG  H+ SP   +  +I  F    +  ++
Sbjct: 181 DLTQPATPYITTANQAVVAVGKQQTLRLHFMDGSTHQISPTDPNQYNISTFAENDVPMQA 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                I L  +D  ++ +           P+       E ++RL+   +P+   ++ +V 
Sbjct: 241 GQQEDIKLTRSDAPMAAMTAGQLWQAQPGPQRRAAMI-ELNRRLS---YPIACVVLMLVG 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSI 349
                  R+  K     +++ + F  ++  S  +   +Q    P         LF  + +
Sbjct: 297 VPLGLSSRRGGKSTGFVLTIVLVFLYYFLSSVGVALAKQGKLHPVIGVWAANVLFGFAGV 356

Query: 350 FLL 352
            LL
Sbjct: 357 LLL 359



 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 125/370 (33%), Gaps = 26/370 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R    S  +     + ++ V    + I  +  +   L  +      LIP ++ 
Sbjct: 418 LLDDYVMREFLTSLALVLSSFLVLSVVFSFFELIGDIIRNRTPLVTVGGYLLNLIPYMIY 477

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +TP C  +     +  +NR++EL  +  +G S   ++ P+  LA +L++ LF  +++  
Sbjct: 478 SLTPLCALIAVLVTVGGLNRSSELTAMKASGMSLYRIVAPIFVLAAVLAVGLFAFDDLYL 537

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDDLYIKISKYNPNN-TLQGIFI 175
           P+     + L ++ +     ++L                        ++ +      + +
Sbjct: 538 PQANRRQEALRSEIKGKPAQTFLRPDRKWISGQEANGSPTRIFYYQFFDSDKDVFANLTV 597

Query: 176 VDSRDTQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            + +       +  +A S   +   Q   + +G     +      SI  ++ +   T   
Sbjct: 598 FEFQPGSFLLQRRIFATSARWNPQVQQWEMENGWQRTFNHE----SIATYQPFATSTFPE 653

Query: 234 NSSTIVLKANDQNLSFLLNPNP-----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                     +   S  ++        ++           R + + ++   L  ++  + 
Sbjct: 654 IHELPAYFKKESRPSQEMSYGDLSAYIHDLKQSGFDTMRLRVQLNHKIAYPLMTLVMAIF 713

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LF 344
           ++  A       +R  +     ++ ++       S     +       P+L  +    LF
Sbjct: 714 AVPFAMMMG---KRGSLAGYATAIGMAIAYQLIASVF-ESMGNVNALPPMLAAWSVDLLF 769

Query: 345 CISSIFLLMI 354
            +   +LL+ 
Sbjct: 770 ALGGTYLLLR 779


>gi|319789793|ref|YP_004151426.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
 gi|317114295|gb|ADU96785.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
          Length = 359

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 13/296 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   I R   +S    +F+  + +       V     S    L +    +P  
Sbjct: 1   MKVLHRYIAFEITRVAALSSALFLFVILMDRASTIAETVLGKGVSFLDFLSVLAKGLPAF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P  F +    V   MN N EL    + G S   L KPV  L ++ S+  F S   
Sbjct: 61  LGIVIPMSFVLSVVIVFIGMNSNNELTAAKSCGISLKELSKPVFLLGLIFSLLSFYSLMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK    +K+   +         + E  F      +   + K  P   L   F+   + 
Sbjct: 121 LAPKSNVAMKRELEELLRKKITLSITEKRFSSNFPGVTFYVEKLYPEKGLLVNFMASLQK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKS-PISKDISIMKFKSYTLQTESANSST 237
            +     + + G +      + L   DG          K+   +KFKSYT++        
Sbjct: 181 KEKLVTAFGRRGFLRTKGDTVFLDIEDGSAQVVDWKKPKEFKFIKFKSYTVELYKFTRKE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               A  + L  LL           E  +  R    KR       +I G+I    A
Sbjct: 241 RFKAAKYKTLFQLL----------KERDKEARVAVVKRTALAFASLIVGIIGFSIA 286


>gi|119356768|ref|YP_911412.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119354117|gb|ABL64988.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 442

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 11/259 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F+ + + I+F+  +         +         LL++       +
Sbjct: 1   MKIIDRYLLKSHIGPFIFAFITILFVLILQFFAVFSERLLGKGIGWMTLLELVVVQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +       +M   +E+ I   +G S   L+ PVL  A LLS+      N+
Sbjct: 61  VSFTIPMAVLIAVVMAFGAMTNASEITIFRASGISLYRLMAPVLLAATLLSLVAERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L A    +     L EN F  L D   I + + +P    ++GI I D  
Sbjct: 121 VLPEANYKAKSLMADIVKSKPVFGLTENAFSTLIDGYSILVRQTDPETGAIRGIVIYDFT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIMKFKSYTLQTESA- 233
                 I  A+SG ++         I L +GE+H  + P  K+   M FK +    ES+ 
Sbjct: 181 RPDFRTIVTAESGGVNFSSDYHYLIITLENGEIHEIQQPQHKEYRKMSFKKHRFVFESSG 240

Query: 234 ----NSSTIVLKANDQNLS 248
                S    ++++D++LS
Sbjct: 241 FGFNRSVESAIRSDDRDLS 259



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
             Y +E+HK+       ++F L+    A    L R+        +SL   F ++W     
Sbjct: 344 NKYMAEYHKKYALAFACIVFALVG---APLGVLARRGGFGIGAGLSLVF-FVLYWILMIS 399

Query: 326 IHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             K+ +     P   ++L    I  I L ++ +
Sbjct: 400 GEKLAERGLLDPGLSMWLGNITIGFIGLFLLYR 432


>gi|294102483|ref|YP_003554341.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
 gi|293617463|gb|ADE57617.1| permease YjgP/YjgQ family protein [Aminobacterium colombiense DSM
           12261]
          Length = 365

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 135/350 (38%), Gaps = 15/350 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
              + +I + +  SF+   +    +     +L +I +++     S+ ++L++  Y +P V
Sbjct: 5   GILDRFIWKEMAGSFVFGVMAFTMVFVAGDLLFQIASMIIEKGISIGVVLRLFIYSLPEV 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        ++ N+E++ +  +G S   ++KPV+  ++L+ +   I    
Sbjct: 65  IILTLPMACLLSALLTFGKLSTNSEIVALKASGISFQRILKPVIVGSLLVGLSALILNET 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNP-NNTLQGIFI 175
           + P      + L     +    S L+E +F R + +      I I K  P   T+  + +
Sbjct: 125 VVPFSNRAAENLMRFEVMREKPSVLKEQVFLRDESNGQLNRVIYIEKLQPRKGTMTNVLV 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESA 233
            +    +  +I   ++G     +    ++DGEV + +   K   + +F+   + L     
Sbjct: 185 QEFEKGKLKRITVGKTGLWKDGK--WWIDDGEVFQVTNGGKVELLFRFERQQFDLNLSPQ 242

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                  K ++ +   L+         +   L      FH R       V+   ++I+ A
Sbjct: 243 QVEQASRKPSEMSALELMAQ-IRLLQAQGGNLAPLWVLFHLRFAVPWASVV---LAILGA 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                  +        +S+ I F V++    +     +  +  P+L  ++
Sbjct: 299 SLGVRSHRTGSGVGFGLSVMIVF-VYYVVMSLCKAFGETEHMPPLLAAWV 347


>gi|124006213|ref|ZP_01691048.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
 gi|123988137|gb|EAY27795.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
          Length = 491

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 113/286 (39%), Gaps = 20/286 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +L+     F+++   +VFI  V Q+LQ ++       S  +  ++  Y    +
Sbjct: 1   MKKIDKLVLQSFFGPFILTLSVLVFIFLVQQLLQYLDEFMGKGLSYLVFAELVFYFSLHI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PMV P    + +     ++  + EL  + ++G S I ++ P+  + +  ++  F   N 
Sbjct: 61  IPMVLPLATLLASLITFGNLGEHHELTAMKSSGISLIRVLTPLFMVVVCFAVVSFWFNNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           I PK       L    +       ++E  F+    +  IK++   P+  TL+ + I D  
Sbjct: 121 IVPKANLDAYSLLYDIRQTKPALDIKEGAFYGGIPNYSIKVNHKFPDGRTLKDVIIYDHS 180

Query: 180 D-TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDI-------------SIM 221
                 ++  A SG +      +  A  L  G  + + P  +               S M
Sbjct: 181 GRRGNKQVILADSGQMYTFDKGNFLAFELFKGVRYHELPTREGARPSEEFLKSKFKHSKM 240

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
            F   +   ++ + +        +N++ L N + ++   + + LE 
Sbjct: 241 IFSLESFNMDTTDKNLFKSNKIMRNVTEL-NKDIDSLTRKRKDLEA 285


>gi|50119363|ref|YP_048530.1| putative permease [Pectobacterium atrosepticum SCRI1043]
 gi|49609889|emb|CAG73324.1| putative permease [Pectobacterium atrosepticum SCRI1043]
          Length = 371

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 137/364 (37%), Gaps = 30/364 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  ++   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALILAMFTAVIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+   + + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSMHQEEVLAEAKANPSMAALVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y         + 
Sbjct: 182 NARPSVVVADRGHITQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQTVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                    +  L + + ++           R+EFH RLT  +  +I  L+ +       
Sbjct: 242 NNSDVQQMGMQALWSSDAHDA----------RAEFHWRLTLIVSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL-----FCISSI 349
             RQ +      +S+  +  ++  F  +   +  N       P+++++L     F I+ +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWIWLTNLMYFGIAVM 344

Query: 350 FLLM 353
             L 
Sbjct: 345 LNLW 348


>gi|238897461|ref|YP_002923138.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465216|gb|ACQ66990.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 364

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 129/364 (35%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ I ++ +     + FI +  +++  ++ + +     +++  + G     +  
Sbjct: 2   VITKYLIKEILKTQVAILFILSFIFFSQKLVTILDDIINHDIPAHLIFSLLGLGFAKMAE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P             +   +E++ +   G  +  LIK  L LA L S+F  I+     
Sbjct: 62  LILPLSLFFALLMTYGKLYNESEIIAMYACGVGKTRLIKVALVLAALTSLFATINVFYFS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P      K++  + ++    S L +  F    D   +   +   N     IF+       
Sbjct: 122 PWSVKHEKKIINEERVNPGLSALVKGQFQSSPDGKIVLFIQDIQNKKFHKIFLAQRESNH 181

Query: 182 -QTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A SG I         + LN G  +   P   D  I  F  Y       + + 
Sbjct: 182 TQRPTVVVANSGYISAPAPGIQLLTLNHGMNYEGIPPLGDFRITYFNHYQAVISRKSVTK 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++S L   N  +           R+E H RLT  +  VI   +++     + 
Sbjct: 242 NSNTAQQMSMSSLWEANDPDT----------RAELHWRLTLIVSVVIMAFMAVP--LSQV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  N       P+++L+L       L +I
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSTLRSNAGNNRLDPLIWLWLVNGLYTILAII 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNIW 348


>gi|86605800|ref|YP_474563.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554342|gb|ABC99300.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 376

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 133/356 (37%), Gaps = 16/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y+   +    L        +    ++      +   +     +L++    +P ++ 
Sbjct: 10  LLERYLFGQMLTPVLAGIAGGTLLLLAGRLFTLAERLVEGSVPPLTVLRLLILDLPEMVL 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T   L  ++ N+E+  +   G     + +P+L + +L+S+  F   N++ 
Sbjct: 70  LGMPIAAFFATMLTLGKLSGNSEITAMRAAGIPFTRIFRPLLLVGLLMSLSAFWISNVLL 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD------DDLYIKISKYNPN-NTLQGIFI 175
           P  +  I+Q+  +A LA   + ++ ++FFR        D+L+  I + +P  NT+Q + I
Sbjct: 130 PASKREIRQIDQQALLARATTPVQYDVFFRTARVGGTEDNLWFFIRQVDPRLNTMQDVTI 189

Query: 176 VDSRDTQTHKIYYAQ---SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           +        K   A+   +     +     L++G  HR  P    ++   F    L+   
Sbjct: 190 LQVDPLPGGKYQLAEVTLAAQAVWNGLDWTLSEGVTHRYGPDGLSLAEEPFDRKPLEVSQ 249

Query: 233 ANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             ++     +  N+ +L  L     +         +  R+EFH R +  L      LIS+
Sbjct: 250 DLAALMQPPVPPNELSLPELAER-ISRLARSNLNTQPLRTEFHMRFSLPLASFFAVLISL 308

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
                    R+  +   +   + + F  +   S +   + +     P    + F I
Sbjct: 309 PLGST--TARRVGRYGGVVFGILLVFAYYVVLS-VSRSLGEAGALPPWAAAWSFNI 361


>gi|298369121|ref|ZP_06980439.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283124|gb|EFI24611.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 371

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 146/364 (40%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +  + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAVDAVAALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD---DDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L    D +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRSDRVYFVETFDTESGIMKNLFLRELD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                 I +A+ G  ++  +++ + L +G  +   P   D + + F+  ++   +     
Sbjct: 182 KNGNDNIIFAKEGNFALTDNKRTLELRNGYRYSGKPGRADYNQVSFEHLSMIISTTPKIV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             + A+ + +        +NP Y+        +E   RL+    P+   L+S++A     
Sbjct: 242 DPI-AHRRTIPTAKLFGSDNPQYQ--------AELMWRLS---LPISVLLLSMLAVPLSY 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMIK 355
              +    + I I++ +      G +++   +E     ++  +L + +  I    +L+  
Sbjct: 290 FNPRTGHTYNILIAIGMFLIYQNGLTFLRDAVEDGKIHFWFGMLPMHILMIVIAVVLLRV 349

Query: 356 KKYT 359
           +   
Sbjct: 350 RSMP 353


>gi|71083418|ref|YP_266137.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062531|gb|AAZ21534.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 378

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 126/367 (34%), Gaps = 18/367 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K     + +     FL+    I  I WV+Q +  ++ V        +  K +    P ++
Sbjct: 3   KIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKII 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +  + +L       EL+I  N G  +I  I   +  ++   +   +   +I
Sbjct: 63  SRIFPFAIFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   +     + L    S L+   F  +  +L I   + N    L  IF+ +  D 
Sbjct: 123 TPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDI 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL- 240
              +  +A++  +++D    IL   +    + I+  IS  +F          NS+TI   
Sbjct: 183 NNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKTDYNISKFNSNTITYQ 242

Query: 241 KANDQNLSFLLNPN---------------PNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           K  +     L+  +                N  N R + L+    E + RL + L+    
Sbjct: 243 KTQEAKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLKNVYKELYSRLVKPLYITFL 302

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             IS++   K                 +  F +F         I  N      L +F   
Sbjct: 303 ISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFL--ESSSKLISTNLMQNIFLSIFPLI 360

Query: 346 ISSIFLL 352
           ++ I  L
Sbjct: 361 LTLIIYL 367


>gi|86609743|ref|YP_478505.1| YjgP/YjgQ permease [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558285|gb|ABD03242.1| putative permease, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 362

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 16/362 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           E Y+ + + R F +       +    Q+    +L+         +L I    +P +L + 
Sbjct: 2   EFYLFKEMIRPFFLGVAGGTVMMLGNQLFIYTDLLVKKGAPPLTILHILLLNLPAILVVT 61

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P      T   L  M  ++E+  +   G     +  PVL + +L+S    ++  +I P+
Sbjct: 62  FPIAGLFTTLLTLGKMGADSEITALRAAGIPYRKVFIPVLCIGLLISGLALLTNEVIVPE 121

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQT 183
               +K L+    LA            R+DDDL+  +   +P    +Q + I+D +    
Sbjct: 122 TNQKVKILNKNLILAQDALLFNPEEIVRVDDDLWFHVGSIDPKTGLMQDLLILDRKAETG 181

Query: 184 ----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                ++  AQ+       Q+  L D  + R     +     + +   L   +     + 
Sbjct: 182 HLRYPQVISAQTAQQV--GQSWQLRDVVIRRYDEQGRTYYEGQVEEMQLNIVNKLVGLVY 239

Query: 240 LK--ANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAADK 295
            +    +Q    L          +    +  R  +E+H +    L    F  I + A   
Sbjct: 240 AEKVPQEQRAGELWEQCQRYRAEQRPSADVARCLTEYHLKFAIPLA--SFFAILVAAPLG 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              VRQ  +   + +++ + F  +   S    +      +P+    L   +F      LL
Sbjct: 298 LQTVRQTGRYGGVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSLL 357

Query: 353 MI 354
             
Sbjct: 358 WR 359


>gi|282856200|ref|ZP_06265483.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
           piscolens W5455]
 gi|282585959|gb|EFB91244.1| putative membrane protein, YjgP/YjgQ family [Pyramidobacter
           piscolens W5455]
          Length = 368

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 139/369 (37%), Gaps = 18/369 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           ++ + +I+R +   FL   +    I     +L +  +L+     SL +  ++  Y +P+V
Sbjct: 5   RTLDRFIMRELMGPFLFGVMAFTLIMVAGGLLFKLADLIIEQGVSLGVAGRLFIYELPSV 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +    + M+ N+E++ +   G S   + +PVL  A+ +++        
Sbjct: 65  VVLTLPMSCLLASLLGFSKMSANSEIVALKAAGISFSRIGRPVLVAALGVTMLSLALNET 124

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNP-NNTLQG 172
           + P  +   +  +  +         L+E +F R  D         + I+K    + T+  
Sbjct: 125 VVPLGKIAAQNVMRYEVAREKPA-LLKEQVFLRSSDPSSEGLRRIVYINKLYARSGTMDD 183

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QT 230
           + + + +     ++  A+ G+         L+DG+V            + FK   L  + 
Sbjct: 184 VVVQEFKGADLVRLTTARKGTWVDG--VWYLDDGDVFEVKGRDTVELTLHFKRQALPIRL 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                S    K +D +   L+         + + LE     FH RL      VI  LI  
Sbjct: 242 TPQQISRSTAKPDDMSCLELIK-YIEILRAQGKSLEPLWVAFHLRLAVPWACVILALIG- 299

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            AA     +R+         S+ I F V++    +   + Q  +  P+L  +L  I    
Sbjct: 300 -AALGVRPMRKGGASVGFGQSILIVF-VYYVVMSMGRSLGQAGHIPPVLGAWLPNILFFA 357

Query: 351 LLMIKKKYT 359
             ++  +  
Sbjct: 358 GALLLARRA 366


>gi|332187157|ref|ZP_08388897.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
 gi|332012857|gb|EGI54922.1| hypothetical protein SUS17_2305 [Sphingomonas sp. S17]
          Length = 399

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 127/359 (35%), Gaps = 8/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MKS + Y+ R I      + +    +  + +I +    V++    ++++ ++   L+P  
Sbjct: 1   MKSIDRYMARLIALPLFATLIIAAMLLVLDRIRRLFEFVATEGGPISVVWRMLANLLPEY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        +  ++EL ++   G S   L++     AI+L+         
Sbjct: 61  LGLGIPIGLMLGILLAFRRLATSSELDVMRGVGMSYTRLLRVPYMYAIVLAALNLAIVGY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           ++P  R   + L  + +     + ++   F  L + + ++I +  +    L GIF+  + 
Sbjct: 121 VQPIARYYYEGLRYELRTGALGASIKVGEFTHLGNRMTLRIEESRDSGRDLSGIFVHANT 180

Query: 180 DTQTHKIYYAQSGS-IDLDRQAII---LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    A+ G  +  D   +I   L +G +    P  +   ++ F S+ L  +    
Sbjct: 181 SKGDWIGVTAERGRFLATDDPNVIIFRLTNGTLIHNRPEFRAPRVLTFSSHDLPIDLPKF 240

Query: 236 STIVLK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                +   D   +        +     E     R+EFH RL + +   +  L+++    
Sbjct: 241 DNFRQRGGRDLEFTLPELAKLGHEAPSAEARAGSRAEFHFRLVEVVTMFLLPLLAVSLGI 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                     +    + L     V    + I      +P     L++     + +   M
Sbjct: 301 PPKRSTSALGVFLSIVMLVTYHKVNQYAADIGALGRVDPLIA--LWVPFAIFAGLVGWM 357


>gi|218440672|ref|YP_002379001.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
 gi|218173400|gb|ACK72133.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
          Length = 388

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 130/359 (36%), Gaps = 22/359 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   +  +   +  V+ S  SL + L+I    +P  
Sbjct: 17  SIVDRYLFMELLIPFLFGMGLFTSLGIAIGTLFDLVRKVTESGLSLTVALQILSLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + +  ++EL+ + + G S   L+ P + L+++++   F   + 
Sbjct: 77  IVLAFPMSILLATLMAYSRLASDSELIALRSIGLSPYRLLVPSIILSLMVTGVTFFFSDY 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNPN 167
           + P+     KQ+ A A      +++E+N+ +     +                  K++  
Sbjct: 137 VAPQATQQAKQILADALKKDQPAFVEDNIIYPEYRKITLENGRDQTVLTRLFYAEKFD-G 195

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +QG+ I+D      ++I  +QS   +LD  +    +G ++  +P     +I++F+   
Sbjct: 196 QQMQGLTILDRSQPGVNQIVTSQSAMWNLDSNSWDFYNGTIYLIAPDGSYRNIVRFQHQK 255

Query: 228 LQTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELL-ETYRSEFHKRLTQWLFPVI 284
           L    A       K    + +++            + E           ++       ++
Sbjct: 256 LDLPRAPLDIAKGKQNPAEMSIAEAKEYLRIVKLSKNEPRARKVEVRIQEKYALPFVCIV 315

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           FGLI      K     Q       F    I    ++  S+I   +       P++  +L
Sbjct: 316 FGLIGSAIGLKP----QNNNKATSFGICIILIFSYYLLSFIASSMGIWGIISPVVSAWL 370


>gi|91762159|ref|ZP_01264124.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717961|gb|EAS84611.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 378

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 125/367 (34%), Gaps = 18/367 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K     + +     FL+    I  I WV+Q +  ++ V        +  K +    P ++
Sbjct: 3   KIVYKKLSKDCVNFFLLVVFTISIIIWVLQAVNYLDFVIEDGHGFLVYFKYTLLSFPKII 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +  + +L       EL+I  N G  +I  I   +  ++   +   +   +I
Sbjct: 63  SRIFPFTVFLAFSYILLKYENKNELVIFWNFGIKKINFINFFIKFSLWFVLISLLLNAVI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   +     + L    S L+   F  +  +L I   + N    L  IF+ +  D 
Sbjct: 123 TPFAQDKARSFIRSSNLDFFESVLKPKKFIDIIGNLTIYFDEKNKKGELINIFLNEKTDI 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL- 240
              +  +A++  +++D    IL   +    + I+  IS  +F          NS+T    
Sbjct: 183 NNSQTTFAKTAIVNIDNNKKILTLYDGKSINVINGKISEFEFSKIDYNISKFNSNTTTYQ 242

Query: 241 KANDQNLSFLLNPN---------------PNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           K  +     L+  +                N  N R + LE    E + RL + L+    
Sbjct: 243 KTQETKTINLIKCSLFFNGSIINSTNIEIENIKNCRLDNLENVYKELYSRLVKPLYITFL 302

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
             IS++   K                 +  F +F         I  N      L +F   
Sbjct: 303 ISISLLFILKSKSDHSFNINKFKIYLFAFLFIIFL--ESSSKLISTNLMQNIFLSIFPLI 360

Query: 346 ISSIFLL 352
           ++ I  L
Sbjct: 361 LTLIIYL 367


>gi|217966587|ref|YP_002352093.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
 gi|217335686|gb|ACK41479.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
          Length = 364

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 139/366 (37%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K++  YI   I   F +     + +  +  + +  + +     S  ++LK+  Y IP++
Sbjct: 5   IKTYHKYIFSEILGPFFLGIFGFILVMLIQILYEFSDFIIMRRVSFEVVLKLLYYKIPSL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P             + R+ E+  + ++G   ++L    L  +ILLS+ L+     
Sbjct: 65  FVFVIPVSLLFAIIFSFGRLMRDGEIFAMRSSGIYFLSLTLTPLLFSILLSLILWFFTYS 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           + P+      +L  K           EN+FF  ++  Y  + K     N +Q + + D+ 
Sbjct: 125 LIPESNYRSNRLIQKYFFLNPAPIKGENVFFHDEEGRYYYVKKIIENRNVMQNVLVFDTS 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +  + I Y    +I  +R ++IL +G VH     S  +   KF+ + +           
Sbjct: 185 SSNKYPIIYTAEEAI-WNRDSLILKNGVVHHLGDDSFVVWEGKFEEFKINLPQDFMYIFY 243

Query: 240 LK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +   + L     N          +Y  E + R+ Q +   IF L+         
Sbjct: 244 RDRTPQEMPTNELKKR-INVYKKAGISARSYLVEDYLRIAQSIAVPIFALMGFSVILLTG 302

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSI---FLL 352
              +  ++     S+ I+F  ++GF+ I     +   + P L  +L    + S+     +
Sbjct: 303 ---RGGRLWGTAFSIIIAF-FYYGFNIIARSFGEYAVFSPFLSAWLPNITLGSLSLGVFI 358

Query: 353 MIKKKY 358
              +K+
Sbjct: 359 WKVRKW 364


>gi|301325676|ref|ZP_07219137.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847531|gb|EFK75291.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|323966511|gb|EGB61944.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251764|gb|EGE63450.1| hypothetical protein ECSTEC7V_3616 [Escherichia coli STEC_7v]
          Length = 356

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 139/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L  + I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|255658902|ref|ZP_05404311.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
 gi|260848851|gb|EEX68858.1| permease, YjgP/YjgQ family [Mitsuokella multacida DSM 20544]
          Length = 364

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 147/375 (39%), Gaps = 28/375 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R + ++F+        +      + +    ++    SL+ ++K+  + +P+
Sbjct: 3   IRILDKYIFREVFKAFIFGICAFSAVFIGSGTLFKIAKYITDYGASLSAVIKVFVFGLPS 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + T      ++ ++E+  + + G     +  P + +  L+SI       
Sbjct: 63  VIMWTFPMSMLLATLLTFGRLSSSSEITAMKSCGIGFYRIAAPAVIMGFLVSIGAIAFNE 122

Query: 120 IIEPKCRSTIKQLSA---------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NT 169
            + P   +  + +           K+Q  +    +++    RL     +   +Y+ +  T
Sbjct: 123 YVVPWANTAYRNVVYYEIQGNNGMKSQEHIILKDIQDGKIQRL-----VYARRYDGDTQT 177

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           LQG+ + D ++D +   +  A+     +D+   I+++G ++  S    + S+ +F +  L
Sbjct: 178 LQGVTMQDFNQDGKVSHVENAEYAEYSMDK--WIMHNGMLYDISEGQSEHSM-RFDTQVL 234

Query: 229 QTESANSSTIV--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             ++     +       +  +  L     N    +        +E ++R+T  +  +IF 
Sbjct: 235 PIKANPKQIVREQKDPEELTMKELRAQ-INIMKTQYVDTNKLEAELYQRITVPMASLIFA 293

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFC 345
           LI +    +    R           + I F  ++    + + + ++    PI+ ++    
Sbjct: 294 LIGVPLGLQP--TRNSSSAGFAMSVIIIFF--YYALMTMGNALARSGAVAPIIAVWIPNI 349

Query: 346 ISSIFLLMIKKKYTK 360
           +  I   ++ ++ ++
Sbjct: 350 VGLIAGFILIRRASR 364


>gi|189500558|ref|YP_001960028.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
 gi|189495999|gb|ACE04547.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
          Length = 441

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 141/429 (32%), Gaps = 73/429 (17%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+     FL S + I+FI  +  + +  +  +       ++ ++    +  +
Sbjct: 1   MKILYRYILKEHIGPFLFSFITILFILTLQFVTRFFDRFAGKDLGFIVIAELISLQVAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T     ++  ++E+ ++   G S   L+ PVL  A LL+  L    NI
Sbjct: 61  VVLALPMAVLVATLIAFGNLANSSEMTVMRAGGVSLYRLVFPVLVAAALLTGILERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L      A     L EN F  L D   I + +   + NTL+GI I +  
Sbjct: 121 VLPEANYQAKVLLRDITRAKPTFGLTENAFSGLVDGYSILVREEGSDPNTLEGITIYERG 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIMKFKSYTLQTES-- 232
             +   +  A+SG I          + L +G++H+ +    ++  +M F+ +     S  
Sbjct: 181 SNEDKAVITAESGHIAFTADYHYLILTLFNGQMHKMQGQGKEEYRVMTFEKHRFVFSSTG 240

Query: 233 -----ANSSTIVLKANDQNLSFLLN--------------------------------PNP 255
                   + I     + +   L                                     
Sbjct: 241 YGFERTEGNEIRRGDRELSAEQLFGMGMKFRKRMLDATVLIDKSIEREQKAINARSVQPE 300

Query: 256 NNPNYRPELLETYRSEFHKRLTQWL---------------------------FPVIFGLI 288
           N            ++E  KR+ + L                           + + F  I
Sbjct: 301 NRGAESDRYAGINKAEAEKRVDKMLVAVDREIEHIEQSQGMYNKYMVEFHKKYALSFACI 360

Query: 289 SIVAADKRALVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
             V       V  ++    I   LS+  F ++W    +  K+       P + ++L    
Sbjct: 361 VFVLVGAPLGVLAKRGGFGIGAGLSLLFFILYWALLIMGEKLSDRGLLDPGISMWLANAV 420

Query: 348 SIFLLMIKK 356
            + +  I  
Sbjct: 421 MLLIGFIAM 429


>gi|262341091|ref|YP_003283946.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272428|gb|ACY40336.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 381

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 149/373 (39%), Gaps = 21/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +LY++R     F +    I  +  +     +I+ ++    ++ I++K   Y   ++
Sbjct: 4   IKKLDLYMIRLFITPFFIIFSTIFAVFMIQFFWSQIDELTGKNINILIIIKFVFYFGISI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+VTP    + +      ++ N EL+ I ++G S   ++KP+L +  +LSI L+   ++
Sbjct: 64  IPLVTPISLLLTSIITFGHLSENQELIAIKSSGISLFRVMKPILGITCILSIGLYFFSDL 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             PK     K+L  K         L+E +F  L  D +IKI +   N  L  IFI     
Sbjct: 124 AIPKAIKQAKKLGYKISSTHPSFKLKEGIFVNLLPDFFIKIDRK-KNQQLHNIFIFFYDK 182

Query: 181 TQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISK--DISIMKFKSYTLQTESA 233
                   +Q G    ++         L +G ++ ++   +     I++F +     +  
Sbjct: 183 NLLVNTILSQKGFFIPNKDQSEFIQFKLINGILYSENTNKEQSSYQIVQFDTLIQNFQIP 242

Query: 234 ---------NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
                    +  +   +   Q ++ L      +       L   + E  K+ T  +  +I
Sbjct: 243 FYEEIKNLDDYESYNTQNLIQKINLLKKEKSKHQKENIHKLAKLQLELQKKFTFPVTCII 302

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFL 343
             L     A   A++R+    +P  I+L+I    +   +   +K+E+   Y     ++  
Sbjct: 303 MFLTG---APLGAIIRKGGIGYPTMIALAIFIIYYTLLTITQNKVEKVEIYPWIGAWIPN 359

Query: 344 FCISSIFLLMIKK 356
           F    + + M  K
Sbjct: 360 FIFFPVSIWMTYK 372


>gi|323978945|gb|EGB74025.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 356

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 140/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI     + + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSVQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L  + I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDVLIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|46580072|ref|YP_010880.1| permease [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602470|ref|YP_966870.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|46449488|gb|AAS96139.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562699|gb|ABM28443.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|311233929|gb|ADP86783.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
          Length = 380

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 119/363 (32%), Gaps = 17/363 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + +   FL+    ++ +  + + LQ   L       L     +  YL+P  + +V P 
Sbjct: 1   MFKELVSIFLLCLGALLSLILIGRGLQLRELFLGLDLGLTDATLLFLYLVPFFMLLVVPV 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        M+ + EL+ +   G S   ++   L   +L +                
Sbjct: 61  ACMLSVFLTFLRMSTDRELVALKAGGVSIYQMMAAPLVFCVLCAGLSLSISLHWLSWGMG 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKI 186
             +    +         ++  +F +    L +   + +P    L+ + + D     +   
Sbjct: 121 NFRATIMEIANTRARIVIQPGVFNQDIPGLTLFARQVDPATGNLRQVIVEDRSRPGSTLT 180

Query: 187 YYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSY----TLQTESANSSTI 238
             A  G+   D         L DG +++     +++S++ F  Y     L          
Sbjct: 181 IVAPEGTTATDEVRGEILFHLRDGRIYK--ADGENVSVLGFSEYSVRLDLDKLFKGLELG 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETY----RSEFHKRLTQWLFPVIFGLISIVAAD 294
            +K  + +   L   + N   Y  E+ E Y      E HKR       ++ G+ ++  A 
Sbjct: 239 EIKPKEMSWRQLAGLDLN--RYEAEMGERYVRKVLVEVHKRWALPAACIVLGIFALPLAC 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +R++  +    +   + + +              P         LF ++ ++ L +
Sbjct: 297 AFEGLRRQLGVALALVMFLVYYSMLSLGLSTGEAGTVPPVVGLWAPNVLFLVAGLYGLRL 356

Query: 355 KKK 357
             +
Sbjct: 357 TAR 359


>gi|119471263|ref|ZP_01613766.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
 gi|119445729|gb|EAW27012.1| hypothetical protein ATW7_11365 [Alteromonadales bacterium TW-7]
          Length = 370

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 136/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   + +S +   L ++ I    +++  +   S  +    ++L +    +P +  
Sbjct: 2   LIFRYLTAEVLKSQVAVFLTLMTIFLSQKLVVILGDASEGSIPAQLVLSMIALKLPQLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +  ++E+ ++   G S   +++  L  +  L++        + 
Sbjct: 62  LILPLSIFLGIILAYSRIYADSEMTVLKACGVSEWYVVRVTLISSAGLALLAGALTMYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNN-TLQGIFIVDSRD 180
           P       QL  +A+     S L    F    +    + I         L  +F+    +
Sbjct: 122 PWASEQEYQLKEQAKADAGLSALRAGRFQETGNEKAVVFIHNIENGGKELNKVFVAQLPN 181

Query: 181 TQTH---KIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +      ++ YA+ G +       Q ++L DG+ +     +  +++ +F  Y++Q     
Sbjct: 182 SDNDELARLVYAEQGVVIEAQNGEQQLVLTDGKRYETDATTPALNLTEFDGYSVQIREQE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K      + LL  N       PE +  ++     R+   L      L++++A  
Sbjct: 242 IEHQRRKLEAVPTNQLLAIN------TPESIAQWQ----WRIAIPL---SIPLLTLLAVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLL 352
              +  ++ K   +  ++S+  G F   +     IE  + P  I + ++ L  +    LL
Sbjct: 289 LSVVNPRQGKFAKLVPAISLYLGYFILLNAAKFAIEDGKIPPSIGLWWIHLSALFIGGLL 348

Query: 353 MIKKK 357
           +IK +
Sbjct: 349 IIKGR 353


>gi|254507443|ref|ZP_05119578.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
 gi|219549699|gb|EED26689.1| putative permease, YjgP/YjgQ family [Vibrio parahaemolyticus 16]
          Length = 366

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 127/356 (35%), Gaps = 21/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ +      ++ +   +       ++L I G  IP +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLLLVFVSQTFIKVLGDATDGDIPARLILAIVGLNIPQMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  + LA + ++    +   + 
Sbjct: 62  LMLPMSLYIGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTVLAAFNTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVD--SR 179
           P  +    QL  +     +   L+   F R  D    + I +   +N L  +F+     R
Sbjct: 122 PWSQEKEAQLIEQVAAENSVDLLKAGQFQRTPDGSSVVFIDEIR-DNKLNNVFVAQVRPR 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D     + ++ SG +   D  RQ I+++DG  +   P   D  + +F+ Y+         
Sbjct: 181 DAILPSVMFSNSGEVREHDDGRQMIVMHDGTRYEGIPTRLDYMVTEFEHYSGLIGQREVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        L+     +           ++E   R++     +   L++++     
Sbjct: 241 AKRRSWGAVPTLDLIESTDLSA----------KAELQWRISL-FVCI--PLLTMLVVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFL 351
           A+  ++ +   +  ++   F  F   S     IE  N   +  ++   F +    +
Sbjct: 288 AVNPRQGRFAKMGPAILAYFVYFISMSTTKSAIEDGNIPAVIGMWPINFALLVAAI 343


>gi|84387840|ref|ZP_00990855.1| putative permease [Vibrio splendidus 12B01]
 gi|84377355|gb|EAP94223.1| putative permease [Vibrio splendidus 12B01]
          Length = 366

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDS--R 179
           P  +  ++Q+  +     +   L +  F    D    + I   +  N L+ +F+     R
Sbjct: 122 PWSQDKVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDID-GNKLENVFVAQMRPR 180

Query: 180 DTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+    + +++SG    +   RQ I++ DG  H   P   D  +  F+ Y          
Sbjct: 181 DSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYEGLIGQREVE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                        L+               + ++E   R++  L      L++++     
Sbjct: 241 KKGRDWEAIPTLELI----------GNPENSAKAELQWRISLVLC---IPLLTMLVVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISS 348
           A+  ++ +   I  ++ I    F   S     IE+          PI  L LF    
Sbjct: 288 AVNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGSIPAVVGMWPINALLLFVAIG 344


>gi|294670275|ref|ZP_06735168.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308012|gb|EFE49255.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 370

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 137/359 (38%), Gaps = 19/359 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
            ++ +  + +   + I+ +    Q +  +   +    +++ +  + G+    + P++   
Sbjct: 7   FVKELTFTAIGIFVVILAVLVSTQAINLLGRAADGRVAVDAVAALIGFWTLGMTPLLLVL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + T  VLT   R++E+ +  + G S    ++PVL  A+  +  +   +  + P    
Sbjct: 67  TAYISTLTVLTRFWRDSEMSVWLSCGLSLRQWVRPVLSFALPFAALVAAMQLSVLPWAEL 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPN-NTLQGIFIVDSRDTQTH 184
             ++ +   +     S +E   F  L   +     +  ++     ++ +F+ +  D    
Sbjct: 127 RSREFAEILKQKQELSMVEAGEFRTLGKKNGRVYFVGTFDTGSGIMKNLFLREQDDKGRE 186

Query: 185 KIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
            I +A+ G   +  +++ + L  G  +   P   D + + F+   L   +       +  
Sbjct: 187 NIIFAKEGRFSLTDNKRTLELTQGYRYGGIPGEADYNQVSFEHLNLIISATPKIINPIDH 246

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             + +        +NP         +R+E   RL+  L  +I   +SI+A        + 
Sbjct: 247 R-RTIPTAKLIGSDNP--------QHRAELMWRLSLPLAALI---LSILAVPLSYFNPRT 294

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKKKYT 359
              + I  ++        G +++ + IE +   ++   L + +  +++  +L+  +   
Sbjct: 295 GHTYNILFAIGFFLIYQNGLTFLRNAIENSKLGFWTGFLPIHIIMLAAAVILLRVRSMP 353


>gi|154248856|ref|YP_001409681.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154152792|gb|ABS60024.1| permease YjgP/YjgQ family protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1111

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 123/354 (34%), Gaps = 6/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+   Y+L+   + F M     +    V  + Q  + +  +   ++ LL    Y IP  
Sbjct: 1   MKTLTRYVLKQALKPFFMGLAGFIVFVSVEWLYQISDYIIRNRVGIDKLLLFVMYNIPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P         V++ M  N E+  +   G S   L+ P + LA++L  F ++  + 
Sbjct: 61  TFLGIPVGVLFSIFWVISDMYNNREITALLVHGVSAKHLVTPFIILALILGFFSWLLGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P       Q+  +       S ++ N+   L+ D+Y  + ++N     L  + +    
Sbjct: 121 VVPTANYKSSQILNQYIFQSPESVVKTNMLVELEKDVYFYVKEHNKAKGELYDVVLF-RN 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESANSST- 237
           +    +I  A+   +   +    L DG ++     +  + + M+FK   L          
Sbjct: 180 EEGNEQILTAKK--VIKRKDGWFLLDGSMYIVELKTGFLKLDMQFKEMKLDVAGEIEEML 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K      S  L                   E ++R    L  ++  LI +  +    
Sbjct: 238 RAYKTTRDKTSKELREQLQTYKKLGINASNLIVELNQRYANALGALVIVLIGLPVSLLFG 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + +   I   F+ + +  G     S +  +   +P     L   +F +    +
Sbjct: 298 FISRSWSIILTFLIIVLYQGSGAWLSGMGKEGLMDPMLATWLPNIVFSVVGFIM 351


>gi|85713126|ref|ZP_01044159.1| Predicted permease [Idiomarina baltica OS145]
 gi|85693042|gb|EAQ31007.1| Predicted permease [Idiomarina baltica OS145]
          Length = 371

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 135/367 (36%), Gaps = 27/367 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  Y++    +S +   + ++ I    + ++ ++  S      +I+ ++    +P +
Sbjct: 1   MRIF-KYLIAETLKSQIAVLVVLMTIFVSQKFVRVLSDASEGDIPSSIIFQLLSLNLPAL 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        +  + E+ ++   G S   + +  L +A++L++        
Sbjct: 60  LALIIPLSLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVVAVILALLTAALTMY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSR 179
           + P      +++  KA+     + L    F +  +    I I   +    LQ +F+   +
Sbjct: 120 VVPWSLEQEQKIEDKARADSGLTALIPGRFQQSSNGKAVIFIQSQDDQGDLQNVFVAQHQ 179

Query: 180 DTQTH----KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
             Q       +  + SG ++ +      + L DG+  R +   +   +M F+ Y LQ + 
Sbjct: 180 AEQGRIRSGSVVVSTSGEVNTESSGSQWLELRDGK--RFAGDGEHYQLMSFEQYRLQIKE 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                 +       ++ L            E      +E   R+   L      L++++A
Sbjct: 238 QPVDEQLRDLEAYTVNELWQ----------EQSNAAAAELQWRIAIPL---AMPLLTLIA 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFL-FCISSI 349
                +  ++ K   +  ++ I  G F         +     P +I + ++ +   +  I
Sbjct: 285 VPLSRVNPRQGKFARMAPAILIYLGYFLVLMAAKSAVRDGVIPTFIGLWWIHVALLVFGI 344

Query: 350 FLLMIKK 356
            LL   +
Sbjct: 345 ALLSRAR 351


>gi|312897532|ref|ZP_07756952.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
 gi|310621384|gb|EFQ04924.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
          Length = 364

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 130/367 (35%), Gaps = 13/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        +      L RI NL++    S+    +I    +P+
Sbjct: 1   MRILDKYILKEFIGPFLFGVCAFTSVFVGTGTLYRIANLINQYGASMWAAFRILVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +      M+  +E++++ + G +   L  P+   A+ +S+       
Sbjct: 61  IIVITFPMSVLLGSLMAFGRMSAASEIIVMRSGGQNFPRLAMPIFITALCISLGTTAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI----KISKYN-PNNTLQGIF 174
            + PK  +   ++  +   A      ++++  +      I       +Y+     L+ + 
Sbjct: 121 FVVPKANNAYNRIINEEVKAGAQPTTQDHIILKNVKGSDISSLMYARQYDGQEKRLKDLT 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS--PISKDISIMKFKSYTLQTES 232
           + +  +    ++  A     D D+   I++ G ++  S     +    M F   TL    
Sbjct: 181 VQEFDNDVLTRVEKADYAEWDGDK--WIMHKGIIYDLSGGDEQQVTRTMTFNHQTLPISQ 238

Query: 233 ANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +  +    K ++  +  L        N   +     + E   R +  L  ++  L+  
Sbjct: 239 KPNKMAESQKKPDELTIRELKEQIKVLDNNSVDT-NKMKVELFNRFSMPLASLVCALVGA 297

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
               ++             I + I + +    + + +     PY    L   +  I+ I+
Sbjct: 298 PLGLQKQRGSSSIGFGISVIVIFIYYSIMTISNALGNGGRIPPYVAAFLPDVITGIAGIW 357

Query: 351 LLMIKKK 357
           L+  K +
Sbjct: 358 LIYKKSR 364


>gi|258593793|emb|CBE70134.1| putative Permease YjgP/YjgQ family protein precursor [NC10
           bacterium 'Dutch sediment']
          Length = 356

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 125/366 (34%), Gaps = 19/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I +  ++ C  ++ +      ++ +N V+        +L +        
Sbjct: 3   MLLLDRYLTREIAKPLVIFCGGLLLLFANFTAVRYLNRVADGIMPFQSVLPLVLVRAAVA 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +  ++E+  + ++G S   +++ V   +++++  +      
Sbjct: 63  LELLLPIALHLSVVVTLGRLYTDSEMTALFSSGVSPSRIMRIVCVGSLIVAGIVAFLSIY 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSR 179
           + P       +L  +A   +  + ++   F+       +   +    +  ++ +FI  SR
Sbjct: 123 VRPWANENRYRLEREAAADVDLNDMQPGHFYENSSGTVLFFQRRAQSSGRMREVFIQ-SR 181

Query: 180 DTQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                ++ +A              + ++ +  +++  S     +         L+ E A 
Sbjct: 182 SEDRIRLIWADEAHYPEAVEAGAGRTLVCSGAQIYELSRDRGAVRQATSDELVLEWEKAR 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           + +   K        L                   +EF  RL+  +  ++ GL+      
Sbjct: 242 TLSEEYKRKAAPTWQL----------ARSASPKDIAEFQWRLSTPVAALLMGLLGFP--L 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            RA  RQ K        +S +              +     +P ++     ++ +   ++
Sbjct: 290 SRARARQGKYAKLFVSVVSYATFYNLNMMARHWVEKGVVSTVPGIWWVHLLLAILVASLL 349

Query: 355 KKKYTK 360
            ++ T+
Sbjct: 350 WRRTTQ 355


>gi|166367866|ref|YP_001660139.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
 gi|166090239|dbj|BAG04947.1| hypothetical protein MAE_51250 [Microcystis aeruginosa NIES-843]
          Length = 389

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 131/367 (35%), Gaps = 23/367 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI   +   FL        +   +  +   +  ++ S     + LKI    +P  
Sbjct: 17  SILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +      + +  ++EL+ + + G S   LI P + L+++++   ++  + 
Sbjct: 77  IVLAFPMSILLAALMAYSRLASDSELIALKSIGISVYRLIIPAIVLSLIVTGLTYVFNDY 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDD------LYIKISKYNPN 167
           + P           KA      S++E+N+         + D          +  ++    
Sbjct: 137 VAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRQPDGGEPQTVLRRLFYAERFNG 196

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             + G+ I+D    + ++I  ++S S ++++      +G ++   P     +I++F+   
Sbjct: 197 QEMLGLTILDRTQPEVNQIITSESASWNIEKNIWDFYNGTIYLIDPKGSYRNIVRFQHQQ 256

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR----PELLETYRSEFHKRLTQWLFPV 283
           L         +  +A D +   L          +    P  +   + +  ++++     +
Sbjct: 257 LALPRTPL-DLAFRARDGSEMTLRQAREYLEILQLSGNPTKIRKLQVQIEQKISLPFVCL 315

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FG+I      +     Q       F    +    ++  S++   +       P++  +L
Sbjct: 316 VFGMIGAALGLRP----QNSNKATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPLMAAWL 371

Query: 344 FCISSIF 350
             I  + 
Sbjct: 372 PNILGLT 378


>gi|86147550|ref|ZP_01065860.1| putative permease [Vibrio sp. MED222]
 gi|85834589|gb|EAQ52737.1| putative permease [Vibrio sp. MED222]
          Length = 366

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++Q+  +     +   L +  F R  D   +   +    N L  +F+     RD
Sbjct: 122 PWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMRPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + +++SG    +   RQ I++ DG  H   P   D  +  F+ Y           
Sbjct: 182 SVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYE---GLIGQRE 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  K  +              +         ++E   R++  L      L++++     A
Sbjct: 239 VEKKGRE-------WEAIPTIDLIGNQDNRAKAELQWRMSLVLC---IPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           +  ++ +   I  ++ I    F   S     IE+          PI  L LF    
Sbjct: 289 VNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIG 344


>gi|218710648|ref|YP_002418269.1| hypothetical protein VS_2728 [Vibrio splendidus LGP32]
 gi|218323667|emb|CAV19979.1| hypothetical permease [Vibrio splendidus LGP32]
          Length = 368

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S      +++L I G  +P +  
Sbjct: 4   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGL 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ +     +   + 
Sbjct: 64  LMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++Q+  +     +   L +  F R  D   +   +    N L  +F+     RD
Sbjct: 124 PWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMRPRD 183

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + +++SG    +   RQ I++ DG  H   P   D  +  F+ Y           
Sbjct: 184 SVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYE---GLIGQRE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  K  +              +         ++E   R++  L      L++++     A
Sbjct: 241 VEKKGRE-------WEAIPTIDLIGNQDNRAKAELQWRMSLVLC---IPLLTMLVVPLSA 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           +  ++ +   I  ++ I    F   S     IE+          PI  L LF    
Sbjct: 291 VNPRQGRFAKIGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIG 346


>gi|86607080|ref|YP_475843.1| YjgP/YjgQ family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555622|gb|ABD00580.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-3-3Ab]
          Length = 392

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 127/363 (34%), Gaps = 16/363 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            E Y+ + + R F +       +    Q+    +L+         +L I    +P +L +
Sbjct: 31  LEFYLCKEMIRPFFLGVAGGTVMMLGNQLFIYADLLVKKGAPPLTILHILLLNLPAILVV 90

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P      T   L  M  ++E+  +   G     ++ PVL + +L+S    ++  +I P
Sbjct: 91  TFPIAGLFATLLTLGRMGADSEITALRAAGIPYRKVLIPVLCIGLLVSGLALLTNEVIVP 150

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQ 182
           +    +K L+    LA      +     R+DDDL+  +   +P    ++ + I+D +   
Sbjct: 151 ETNQKVKTLNTNLILAQDALPFDSEEIVRVDDDLWFHVGSIDPKTGWMRDLLILDRKAET 210

Query: 183 T----HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 ++  AQ+       QA  L D  + R     +     +     L   +     +
Sbjct: 211 GHLRYPQVISAQTAHQV--GQAWHLQDVVIRRYDERGRTYYEGQVAEMELNIVNKLVGLV 268

Query: 239 VLK--ANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAAD 294
             +    +Q  + L          +    +  R  +E+H +    L    F  I + A  
Sbjct: 269 YAEKVPQEQRAAELWEQCQRYRAEQRPSADVARCLTEYHLKFAIPLA--SFFAILVAAPL 326

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIFL 351
               VRQ  +   + +++ + F  +   S    +      +P+    L   +F      L
Sbjct: 327 GLQTVRQTGRYGSVALAIVLVFIYYVLMSLGRAMGRVEHIDPWLAAWLPNMIFGGVGFSL 386

Query: 352 LMI 354
           L  
Sbjct: 387 LWR 389


>gi|312142844|ref|YP_003994290.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903495|gb|ADQ13936.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
          Length = 1063

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 134/348 (38%), Gaps = 16/348 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YIL+ +   FL+    I  I          +L+       +++ ++  Y +P V+
Sbjct: 4   KLMDKYILKEVSYPFLLGVFIITIILVGSYFFHLADLIIVKNVPFSLVFRLLLYRLPGVM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P      T   +  +NR  E+  +   G S   L+ P+  L +L+S F F+    I
Sbjct: 64  VETFPIAVLFATMTAINRLNRENEITALRMGGVSIFRLVLPLFILGLLISSFTFLLNENI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD-SR 179
            P      + +  +  L       E  +FF+        +S YN +   L+ I I   + 
Sbjct: 124 VPWTNHQAQNIIRQTILKDAMPDPESEVFFQGPRGRLFYVSSYNQSSGELKNIVIYQLAS 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  ++  A  G ++ +  A +LN G +H+ +   + I   KF    ++        + 
Sbjct: 184 EAEFPEVITAVDGLVEDN--AWLLNTGIIHQYNQGGEIILESKFNQMEIELTDQMREVMG 241

Query: 240 LKAN--DQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            + +  + +   L         +R   +   +   ++H +L + L  ++F    I+ +  
Sbjct: 242 TQKSTAEMSRGEL---GRRIELFRRSGIGVNSLLVDYHLKLAEPLAALLF----ILISLP 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            +L  +        +++ I F  +   S+      +N    P+L  +L
Sbjct: 295 LSLSSKESSTWNFILTIIIVFLYYVVLSFS-RSFGRNEVLSPLLAAWL 341


>gi|330827962|ref|YP_004390914.1| putative permease [Aeromonas veronii B565]
 gi|328803098|gb|AEB48297.1| Predicted permease [Aeromonas veronii B565]
          Length = 362

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 18/354 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R   ++ L     ++ I    Q ++ I   +       ++  +    +P +  ++ P 
Sbjct: 1   MFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAADGEVPTRLVSTLLLLNLPNMALLMLPI 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +   +E+ ++   G S   +++  + LA+L ++    +   I P+ + 
Sbjct: 61  SLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMLLALLTAVVAAFNTGWIAPQAKE 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRDTQT-H 184
              Q+  + +     S+L+   F  LD   L   I   N N + LQ IF++   +     
Sbjct: 121 REYQVIDEFKADPGISFLQAGRFMDLDKGRLVAYIQDLNDNGSKLQKIFVLQRAEGNNPP 180

Query: 185 KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            +  A  G + +D      + L DG  +  +   K   I  F+ Y L            K
Sbjct: 181 SVVVATEGVVTVDENGLQWLTLMDGSRYEGNFSGKQFQISDFREYGLVIRQQEMERSNRK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           A  +    L     N             +E   R++  L   +  L+ +  A  R   RQ
Sbjct: 241 AAAKPTMELFGTQDN----------AMMAELQWRISLPLSIPVLTLLVVPLA--RVNPRQ 288

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +    +   +          +           Y P ++L          L + 
Sbjct: 289 GRYAKLLPAIMLYLSYFLLLSAARSAIDSGRLPYWPGMFLVPLGYLLFIGLPLN 342


>gi|290473524|ref|YP_003466394.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
 gi|289172827|emb|CBJ79598.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
          Length = 366

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 135/365 (36%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +      +   N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVEVLGAAVEGSVPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+  S+    +     
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKGVLVKSALILALFTSMLAAANVLWFT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+ A A+   + + + E  F    D  + + I      N  + +F+   R  
Sbjct: 122 PWSSKYQEQVLADAKANPSLAAIMEGQFKPSRDGNMVLYIGDV-KGNNFENVFLAQLRPV 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + Q   +  A  G ++      Q  +L+ G  +  + + +D  I  FK+Y        + 
Sbjct: 181 NNQRPSVVIADGGHMEERPNGNQVAVLHQGVRYEGTALMRDFRITDFKNYQAVIGHKAAD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   +  S L +    +           R+E H RLT  +  ++  L+ +      
Sbjct: 241 IDSDKVEQKTFSQLWHKGDEDS----------RAELHWRLTLIVSVLVMALLVVP--LSA 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P  +++L   +   L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGGRGKLDPAFWMWLVNGAYFALAL 343

Query: 354 IKKKY 358
               +
Sbjct: 344 ALNMW 348


>gi|121997477|ref|YP_001002264.1| permease [Halorhodospira halophila SL1]
 gi|121588882|gb|ABM61462.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
          Length = 372

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 126/361 (34%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y++R    + L     +  +    Q++  +   +        +  + G  I   
Sbjct: 8   LSIIDRYLVREAAGAALAVLAVLFAVLSANQLIDYLADAAGGDLPGEAVAALMGLQILRY 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +     L  + R++EL ++   G      ++ +L LA+ +++ +     +
Sbjct: 68  LGVVIPAALFLGIVLALGRLYRDSELPVLAACGVGPARQMRGLLLLALPVAVGVGALSTV 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    T    + +A        L+   F    D   +  S+ + +  L+ +F   +RD
Sbjct: 128 AAPWASHTADVYAEQAARTADLGALQAGRFIGGGDAGTVYASRTDGDGVLREVFAH-ARD 186

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +   +  A  G   +D +      +  DG  +   P   D  +  F  + L  ++    
Sbjct: 187 GELETVIRADRGRQLIDPETGQRFFVFEDGHRYDGHPGQLDWRVTDFDRHGLLIDTREPR 246

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK- 295
            +         + L                  R+E   RL+  +  V+  L+++  A   
Sbjct: 247 EVSRDREGTPTAELW----------AAGGLQDRAEIEWRLSMPVMVVVLSLLAVPLAKAE 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               R  K +  + + ++    +  G  ++  +    P  + + ++ L    ++ L   +
Sbjct: 297 PRDGRYGKLLSAVLVFVAYFQLLSSGREWL--EAGIVPAPLGLWWVHLLAGVAVVLWTRR 354

Query: 356 K 356
           +
Sbjct: 355 R 355


>gi|145219916|ref|YP_001130625.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206080|gb|ABP37123.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 441

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 8/258 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F  + L I+F+  +       +           L+++       +
Sbjct: 1   MKLIDRYILKAHVGPFFFAFLTIIFVLILQFFASFADRFIGRGIGFGALVELIALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       ++   +E+ +   +G S   L+ P+L   ++LS F+    N+
Sbjct: 61  VGLAAPMAVLIAVVMAFGALTTTSEMTVFRASGVSLYRLMIPILLAGLVLSFFVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           ++P      + L      A     + EN F  L D   I + K +     +  I I DS 
Sbjct: 121 VQPLANYQARSLMDDIVKAKPNFGITENAFSPLVDGYSILVRKSDERTGGIGDIIIYDST 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHR-KSPISKDISIMKFK--SYTLQTES 232
                 +  A+ G I          + L +GE+H  + P  +    M F+   Y  ++  
Sbjct: 181 RPDFRSVITAEEGRISFSDDGGYLLLTLRNGEIHEVQQPDYRLYRKMSFQQHRYVFESTG 240

Query: 233 ANSSTIVLKANDQNLSFL 250
              S    + N      L
Sbjct: 241 FGFSRSDDRRNRAGGKEL 258


>gi|221133510|ref|ZP_03559815.1| permease YjgP/YjgQ [Glaciecola sp. HTCC2999]
          Length = 389

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 138/366 (37%), Gaps = 22/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+   +S       ++ I   ++ ++ +   +      ++++       P +  
Sbjct: 2   IIFRYLLKETFKSQFAIFFILMAIFITLRFVRVLGDATDGEIPASLVMGFLALYSPVLAS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +           ++E+ ++   G S   + + +L LA++L +        + 
Sbjct: 62  LILPISFFLGIMMAHGRFYVDSEMTVLQACGVSEWYVTRVMLLLAVILGLLTASITMYVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKY-NPNNTLQGIFIVD--S 178
           P    +  QL  KA      + +    F +  +D   I + +  + NN L  IF+    +
Sbjct: 122 PLAVESEYQLREKAGSEAGIAAIIPGRFQQTGNDAAVIFVHEVESANNQLTKIFLSQINA 181

Query: 179 RDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +  ++ Y+Q+G+I+      Q +IL +G+ +  S   ++   + F  Y +Q      
Sbjct: 182 DQPKKVRVIYSQTGTIEVQSDGTQQLILRNGQQYDGSIGQQNYQRVNFDEYRIQIGEQKV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            ++  K        L+           +  +   +E   R+   L       + ++A   
Sbjct: 242 ESMRRKVAALPTLELI----------GDNSDEAIAELQWRIAIPL---ALPFLVLIAVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLLM 353
             +  ++ +   +F ++ +  G F         +E  + P  + + ++    +    +L+
Sbjct: 289 SKVNPRQGRFGKLFPAILMYLGYFLLLMAARRALEDGKIPAGLGLWWVHGIILFIGTVLL 348

Query: 354 IKKKYT 359
            +++ T
Sbjct: 349 SRQRKT 354


>gi|134296646|ref|YP_001120381.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
 gi|134139803|gb|ABO55546.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
          Length = 363

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 137/364 (37%), Gaps = 21/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            + + +   A         + ++L DG  +  +P   +  IM+F+ Y ++  S   + + 
Sbjct: 182 GKVNVVVSHAGHTETRDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNVP 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +      L NP  NN            +EF  R    L  +   ++ I         
Sbjct: 242 TTNSTPTPELLSNPTRNNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQNP 288

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMIK 355
           R+ + I+ + +++ I        + +  +IEQ      +    L+L +  I ++   +  
Sbjct: 289 RRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHLAVAAIVAVIFWLRV 347

Query: 356 KKYT 359
           +   
Sbjct: 348 RNRP 351


>gi|299530038|ref|ZP_07043465.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
 gi|298722018|gb|EFI62948.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
          Length = 369

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 140/367 (38%), Gaps = 25/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P     I+Q+  + Q       +    F           + K +P++     +F+V SRD
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVV-SRD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+   +     ++ +IL DG+          + I +FK Y +Q ++ N  TI
Sbjct: 181 PGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVTI 240

Query: 239 -VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             + A       L+  +              RS    RL      + F ++ +      +
Sbjct: 241 EEMAARSMPTKDLIGKDEP----------IARSVLAWRLGLPFAALNFVILGLAI---SS 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLF---LFCISSIFLL 352
           +  +      + I+L  +F V++    +              IL L    +  +S + LL
Sbjct: 288 VNPRAGNSSSLMIAL-FAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILIVSVLVLL 346

Query: 353 MIKKKYT 359
               +++
Sbjct: 347 ARHFRWS 353


>gi|215488306|ref|YP_002330737.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
 gi|215266378|emb|CAS10815.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
          Length = 356

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKQFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|152978627|ref|YP_001344256.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
 gi|150840350|gb|ABR74321.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
          Length = 368

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 128/356 (35%), Gaps = 22/356 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R + +S       ++ I +  Q+++ +   ++     +++  + G  +P +  
Sbjct: 2   ILTRYLTREVLKSQAAVLFILLLIFFSQQLVRVLGSAANGNVPADLVFSLLGLGMPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ VL L+   +I    +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVLLLSFFTAILAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F   +++ ++       +N +  +++  +R   
Sbjct: 122 PWAIQKQTEIVEDAKANPRMAALSAGQFMVSNNNDFVLFINNIKDNQINDVYLFQTRQKG 181

Query: 183 T--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    S    D  I +F  Y       ++  
Sbjct: 182 NAKPSVVTAEKGELKSLPNGDQILSLANSQRFEGSAALPDFRITRFDEYQAYLGHQSAGA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  +A   + + L   N              ++E H RLT  L      L++++A     
Sbjct: 242 IENEAEVLDFNTLTQLN----------TPAAKTELHWRLTLIL---AVPLMALIAVPMSR 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE----QNPYYIPILYLFLFCISSI 349
           +  ++ +   +  +L +    F   S +             ++P++ +    +  +
Sbjct: 289 VNPRQGRFAKMLPALLLYLIYFLAQSSLKSAGTAGKLDAGIFMPLVNIVFLLLGIV 344


>gi|188494208|ref|ZP_03001478.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|188489407|gb|EDU64510.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
          Length = 356

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + +T
Sbjct: 340 LLMLVARDFT 349


>gi|261211062|ref|ZP_05925351.1| predicted permease [Vibrio sp. RC341]
 gi|260839563|gb|EEX66174.1| predicted permease [Vibrio sp. RC341]
          Length = 366

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG++      RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 TGRDWEALPTLSLL----------KNADRQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +F  +I   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTLS-ATKSAIEDGSLPVIIGLWPVNAALLFAALIVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|331674536|ref|ZP_08375296.1| putative permease [Escherichia coli TA280]
 gi|331068630|gb|EGI40025.1| putative permease [Escherichia coli TA280]
          Length = 356

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPVLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|238023199|ref|ZP_04603625.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
 gi|237865582|gb|EEP66722.1| hypothetical protein GCWU000324_03126 [Kingella oralis ATCC 51147]
          Length = 368

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 145/364 (39%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +    ++    + +     ++ I    Q +  +   +    +++ +  + G+    + P
Sbjct: 2   IYHRQFIKETTLTAIAIFFVVLAILVFTQGINMLGRAADGRVAVDAVTTLIGFWTLGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ I  ++G      I+PVL  A+ L++ +   +  + 
Sbjct: 62  LLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLKKWIRPVLTFALPLAVLVATMQISVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S ++   F  L   D     +  ++  N  ++ +FI D  
Sbjct: 122 PWAEYRSREYAEILKQKQNLSLVQAGTFSELGKKDGRVYFVETFDTDNGIMKNLFIRDID 181

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +T    + +A+ G  D   +++ ++L +G  +       D   + F+   L     N++ 
Sbjct: 182 ETGRDSVVFAKEGRFDLSNNKRTLVLTNGYRYSGIAGRGDFDQVSFQELNLII---NTTP 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            V+   D   +        + N +      Y++E   R++    P+   L+S++A     
Sbjct: 239 KVVDPIDHRRTIPTAQLIGSSNPQ------YQAELMWRVS---LPITVLLLSLLAIPLSY 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLLMIK 355
              +    + + +++        G + +   +E  +  +++ +L + L  I+ I++L+  
Sbjct: 290 FNTRSGNSYHVLLAVGFFLVYQNGLTLLRDAVEDGKINFWLGLLPMHLLMIACIWVLLRM 349

Query: 356 KKYT 359
           +   
Sbjct: 350 RSMP 353


>gi|193214339|ref|YP_001995538.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087816|gb|ACF13091.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 455

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 101/240 (42%), Gaps = 6/240 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+     F+     +VF+  +  + + ++        +N+++++    I  +
Sbjct: 1   MTILTRYILKSHIGPFVFGFATVVFVFLMQFLARYLDRFVGKGLEMNVIIELIVLQIAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + T     +M  ++E+  I  +G S + ++ P++    +L+  +    NI
Sbjct: 61  AVLAAPMAVLISTLMTFGNMVNSSEMTAIRASGISLLRIMIPIIVAGAILTYLMERFNNI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P+     K L      A     LEEN+F  +     I   K +  ++ + G+ I D+R
Sbjct: 121 VLPEANHQAKVLLMDISRAKPSFGLEENVFSDMIRGYTILARKTDEKSSNIAGVTIYDNR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
           ++  + +  A SG  +         + L  GE+H   +P +     + F+++ +  E+  
Sbjct: 181 NSTRNVVITADSGFFEFTSDLRNMIMTLKHGEMHELVNPENHSYRRVNFETHKVVFEATG 240



 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
            L+  Y  E HK+       + F  + +       L R+        +SL I F ++W F
Sbjct: 354 RLINKYLVEVHKKYAIPFACLFFVFVGV---PLGVLARRGGFGIGAGLSL-IFFLLYWVF 409

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                K+       P + +++  +    +
Sbjct: 410 LIGGEKLADRDIVSPAIAMWMGNVVISVI 438


>gi|313668051|ref|YP_004048335.1| hypothetical protein NLA_7130 [Neisseria lactamica ST-640]
 gi|313005513|emb|CBN86949.1| conserved hypothetical integral membrane protein [Neisseria
           lactamica 020-06]
          Length = 392

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 148/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 23  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 82

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 83  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 142

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 143 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 202

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++A+ L DG  +  +P   D + + F+  +L    +    
Sbjct: 203 KNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 262

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +  ++     ++A    
Sbjct: 263 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTVSVLLLC---LLAVPLS 309

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +   +   +L+ 
Sbjct: 310 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 369

Query: 355 KKKYT 359
            +   
Sbjct: 370 VRSMP 374


>gi|110643219|ref|YP_670949.1| putative permease [Escherichia coli 536]
 gi|170683865|ref|YP_001745245.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|194436786|ref|ZP_03068886.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218706607|ref|YP_002414126.1| hypothetical protein ECUMN_3464 [Escherichia coli UMN026]
 gi|256024434|ref|ZP_05438299.1| hypothetical protein E4_13749 [Escherichia sp. 4_1_40B]
 gi|293406597|ref|ZP_06650523.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382336|ref|ZP_06991933.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300900317|ref|ZP_07118496.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312968688|ref|ZP_07782897.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331684626|ref|ZP_08385218.1| putative permease [Escherichia coli H299]
 gi|110344811|gb|ABG71048.1| putative permease [Escherichia coli 536]
 gi|170521583|gb|ACB19761.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
 gi|194424268|gb|EDX40255.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|218433704|emb|CAR14621.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli UMN026]
 gi|291426603|gb|EFE99635.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298277476|gb|EFI18992.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300356207|gb|EFJ72077.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|312286906|gb|EFR14817.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331078241|gb|EGI49447.1| putative permease [Escherichia coli H299]
          Length = 356

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|331648771|ref|ZP_08349859.1| putative permease [Escherichia coli M605]
 gi|330909041|gb|EGH37555.1| permease Ygh-P1, YjgP/YjgQ family [Escherichia coli AA86]
 gi|331042518|gb|EGI14660.1| putative permease [Escherichia coli M605]
          Length = 356

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|293416425|ref|ZP_06659064.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
 gi|291431781|gb|EFF04764.1| permease YjgP/YjgQ family protein [Escherichia coli B185]
          Length = 356

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + +T
Sbjct: 340 LLMLVARDFT 349


>gi|33151747|ref|NP_873100.1| hypothetical protein HD0553 [Haemophilus ducreyi 35000HP]
 gi|33147968|gb|AAP95489.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 367

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 125/358 (34%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEILKSQLAILFILLLMFFSQQLISVLNSAVSGKIPTDLVLSLLGLGMPALSQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L     ++E+ ++   G  +  L K  LFL++  +     +   + 
Sbjct: 62  FMLPLSLFIALLLTLGRFYADSEITVMRACGIGQGLLTKVALFLSLFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIV--DSR 179
           P   +   Q+ A+A+    FS L    F  +     + I   N   N L  +++   D +
Sbjct: 122 PWSINKQSQILAEAKSNPRFSALSVGQFMEV-GGYVLFIENINKQENKLNDVYVFQPDQQ 180

Query: 180 DTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+ G   ++    Q + L +   +  S    D  I  F  Y       +  
Sbjct: 181 KKNRPSVVTAELGGLQALPNGDQILTLANSTRYEGSANVADFRISHFDRYQAYLGYQDIQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T   +    N + L+N   N            ++E   R    +      L++++A    
Sbjct: 241 TNDKRVQRANFTSLINDTSN----------EAKAELQWRF---VLIFAVPLMALLAVPMS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLM 353
            +  ++ +   +  ++ +    F   S +    E +       +         + ++M
Sbjct: 288 QVNPRQGRFAKVIPAVLLYLIYFLLQSSLRSSGENDKLNATLFMPAVSIGFLMLAIIM 345


>gi|293412358|ref|ZP_06655081.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469129|gb|EFF11620.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 356

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   ++   L   +    
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRHLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SPNVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLIGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|157162460|ref|YP_001459778.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|157068140|gb|ABV07395.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
          Length = 356

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTKDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + +T
Sbjct: 340 LLMLVARDFT 349


>gi|254229296|ref|ZP_04922714.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262393202|ref|YP_003285056.1| hypothetical protein VEA_002429 [Vibrio sp. Ex25]
 gi|151938220|gb|EDN57060.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262336796|gb|ACY50591.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 366

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 123/357 (34%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++QL  +     +   L++  F    D   +       +NTL  +F+     RD
Sbjct: 122 PWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKK 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTVDLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E           PI  + L     
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEDGDIPAAIGMWPINAMLLIVAIM 344


>gi|91228859|ref|ZP_01262764.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269966356|ref|ZP_06180442.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187597|gb|EAS73924.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269829033|gb|EEZ83281.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 366

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 123/357 (34%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSAVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++QL  +     +   L++  F    D   +       +NTL  +F+     RD
Sbjct: 122 PWSQDRVEQLYEQVASENSVDLLKKGQFQGTPDGSSVVFIDDIKDNTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQIITMKEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKK 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTVDLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E           PI  + L     
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEDGDIPAAIGMWPINAMLLIVAIM 344


>gi|323697852|ref|ZP_08109764.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
 gi|323457784|gb|EGB13649.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 391

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 139/364 (38%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  I   + + F ++   ++ +  V ++LQ  +L  S    +  +L++  YL P  
Sbjct: 1   MKLLQRQIFLELCKLFGLTVSCLLGLILVGRMLQLRSLFLSQNIGVLNILQLFFYLTPFF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++TP    +        M+ + EL+ +  +G S   ++   +    L ++F F     
Sbjct: 61  LLLITPIATMLSVFLTFLRMSTDNELVALKASGVSLYRMLPAPVLFCSLCTLFAFFISFW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
                    K          +   L+  +F +   ++     + +     L+  F+ D  
Sbjct: 121 GLAWGMDMFKTKLYYFAKTHSKFALQPGVFNKEFPNITFYAHQVDNEKGELKFAFVRDDS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              T  +  A    +  + Q     ++ ++G + R+S    +++I+KF+ Y+++ +    
Sbjct: 181 IKGTSVVVVAPEAEVVSNPQEAKIHVVFHNGRIFRQS--GDELNILKFRKYSIKLDLGKL 238

Query: 236 ST----IVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFHKRLTQWLFPVIFGLI 288
            T       KA D     L +   ++     E    +R   +EF+KRLT  L   I GL 
Sbjct: 239 LTGFNFAEQKAKDMPFFRLRDIRKDHSLMPHENERFFRKVDTEFYKRLTLPLGCFILGLF 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +I  A     +RQ+  +        + + +F     +       P Y       LF   +
Sbjct: 299 AIPIASIFRGLRQQYGLLLAMGLFMVYYTMFSIGVSMGESGTIPPEYGMWAPDILFIFVA 358

Query: 349 IFLL 352
           +  L
Sbjct: 359 LAGL 362


>gi|163803712|ref|ZP_02197572.1| putative permease [Vibrio sp. AND4]
 gi|159172495|gb|EDP57360.1| putative permease [Vibrio sp. AND4]
          Length = 366

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 128/357 (35%), Gaps = 21/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++QL  + +   +   L++  F    D   +       ++TL  +F+     RD
Sbjct: 122 PWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I ++DG  +   P   +  + KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMHDGSRYEGVPTRVEYMVTKFDQYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTLDLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
           A+  ++ +   +  ++ I    F   S     +E+      I ++     +  + +L
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEEGTIPAAIGMWPINAMLLIVAIL 344


>gi|193067274|ref|ZP_03048242.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209920456|ref|YP_002294540.1| hypothetical protein ECSE_3265 [Escherichia coli SE11]
 gi|218555554|ref|YP_002388467.1| hypothetical protein ECIAI1_3129 [Escherichia coli IAI1]
 gi|218696689|ref|YP_002404356.1| hypothetical protein EC55989_3396 [Escherichia coli 55989]
 gi|260857120|ref|YP_003231011.1| hypothetical protein ECO26_4088 [Escherichia coli O26:H11 str.
           11368]
 gi|260869742|ref|YP_003236144.1| hypothetical protein ECO111_3809 [Escherichia coli O111:H- str.
           11128]
 gi|293449328|ref|ZP_06663749.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300815538|ref|ZP_07095762.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|192959231|gb|EDV89666.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|209913715|dbj|BAG78789.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353421|emb|CAU99487.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
 gi|218362322|emb|CAQ99944.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
 gi|257755769|dbj|BAI27271.1| conserved predicted membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257766098|dbj|BAI37593.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|291322418|gb|EFE61847.1| hypothetical protein ECCG_02359 [Escherichia coli B088]
 gi|300531467|gb|EFK52529.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201894|gb|EFW76469.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323173775|gb|EFZ59404.1| hypothetical protein ECLT68_2093 [Escherichia coli LT-68]
 gi|323178689|gb|EFZ64265.1| hypothetical protein ECOK1180_2421 [Escherichia coli 1180]
 gi|323183569|gb|EFZ68966.1| hypothetical protein ECOK1357_3349 [Escherichia coli 1357]
 gi|323946693|gb|EGB42714.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018177|gb|EGB87396.1| hypothetical protein HMPREF9542_03232 [Escherichia coli MS 117-3]
          Length = 356

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|300824070|ref|ZP_07104191.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669797|ref|ZP_08370642.1| putative permease [Escherichia coli TA271]
 gi|331679054|ref|ZP_08379726.1| putative permease [Escherichia coli H591]
 gi|300523460|gb|EFK44529.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|324119792|gb|EGC13672.1| permease YjgP/YjgQ family protein [Escherichia coli E1167]
 gi|331062710|gb|EGI34624.1| putative permease [Escherichia coli TA271]
 gi|331073119|gb|EGI44442.1| putative permease [Escherichia coli H591]
          Length = 356

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|209694120|ref|YP_002262048.1| putative permease [Aliivibrio salmonicida LFI1238]
 gi|208008071|emb|CAQ78212.1| putative permease [Aliivibrio salmonicida LFI1238]
          Length = 370

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 129/360 (35%), Gaps = 22/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S L     +  I    + +Q +   S       ++L + GY +P +  
Sbjct: 2   IIIRYLIKETLKSQLAIFFVLFLIFMSQKFIQILADASDGDIPGGLILSLVGYNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++      ++   + 
Sbjct: 62  LMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYLALITGSIAAVNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNN--TLQGIFIVD-- 177
           P  +    +L    +       L++  F    D    + I   +      L  IF+    
Sbjct: 122 PWSQEQSTKLMENVESDAGIELLQKGQFKPSPDGKAVVFIDDISDKGGKHLVNIFLAQPV 181

Query: 178 SRDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             D+    +  ++ G++   D  RQ ++L++G  +   P   D     F+SY +      
Sbjct: 182 PNDSLRPSVLISEKGTVKQLDDGRQVLVLDNGTRYEGIPTRLDYLESNFESYEVLIGQKE 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +      L+                 ++E   R++  +  +   L+++V   
Sbjct: 242 VKEKRRDWDALPTLDLI----------KRTELEAKAELQWRISL-ILCI--PLLTMVVVP 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLM 353
             A+  ++ +   +  ++ +    F   S     IE+ + +    L+     +  I +++
Sbjct: 289 LSAVNPRQGRFAKLAPAILLYLAYFLSLSAGKSAIEEGSLHPSVGLWAINAVLLIIGIIL 348


>gi|291284363|ref|YP_003501181.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|301017325|ref|ZP_07182089.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|331654591|ref|ZP_08355591.1| putative permease [Escherichia coli M718]
 gi|331664594|ref|ZP_08365500.1| putative permease [Escherichia coli TA143]
 gi|290764236|gb|ADD58197.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|300400298|gb|EFJ83836.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|320656364|gb|EFX24271.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661735|gb|EFX29143.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666886|gb|EFX33862.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
 gi|331047973|gb|EGI20050.1| putative permease [Escherichia coli M718]
 gi|331058525|gb|EGI30506.1| putative permease [Escherichia coli TA143]
          Length = 356

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|16273591|ref|NP_439846.1| hypothetical protein HI1704 [Haemophilus influenzae Rd KW20]
 gi|1176472|sp|P45333|LPTF_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|1574558|gb|AAC23350.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 372

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 126/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|291532164|emb|CBL05277.1| Predicted permeases [Megamonas hypermegale ART12/1]
          Length = 361

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 133/366 (36%), Gaps = 18/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+    +F+        +      +L+    ++    S + ++++  Y +P 
Sbjct: 1   MRILDKYILKETIMTFIFGICAFSAVFLGSGTLLRIAQYITQYGASFSAIVRLIIYSLPG 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +        ++ N+E++ +   G S   L+ PV+  ++ +SIF      
Sbjct: 61  IIVWTFPMSMLLAALLTFGRLSGNSEIIAMKACGVSFKRLVTPVIAFSLGVSIFSIGFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPN-NTLQGIF 174
            + P        L        T    +E++  +   D      +   KY+     L  + 
Sbjct: 121 YVVPASNQAYADLVRYEIQGNTSPESQEHIIIKQIQDGNIQRLVYARKYDAETGNLDNLS 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I +    +  ++  A+     +D    ++ +G ++  S  + +  +MKF S  L      
Sbjct: 181 IQEFEQGKMVRVENAEYAKWSVDE--WVMYNGVLYDLSQPNTE-RMMKFDSQVLPINQTP 237

Query: 235 SSTIV--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              I    K ++  +  L     N    +    +    E ++R T  +  ++F LI    
Sbjct: 238 KQIIKSQKKPDEMTIKELREQ-INIMKSQYVDTKKLEIELYQRFTVPMASLMFALIGAPL 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIF 350
             +      R      F    I   +++    +   I QN +  P++ +++         
Sbjct: 297 GIQPN----RSSSSIGFGISIIIIFIYYTLMTLAGAIGQNSFIPPVIAVWIPNIVTLIAG 352

Query: 351 LLMIKK 356
           + +I+K
Sbjct: 353 IYLIRK 358


>gi|159028498|emb|CAO87305.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 389

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 131/372 (35%), Gaps = 33/372 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI   +   FL        +   +  +   +  ++ S     + LKI    +P  
Sbjct: 17  TILDRYIFVELLLPFLFGMGLFTSLGVAIGTLFDLVRRITESGLPFTLALKILLLKMPEF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +      + +  ++EL+   + G S   LI P + L+++++   +I  + 
Sbjct: 77  IVLAFPMSILLAALMAYSRLASDSELIAFKSIGISVYRLIIPAIVLSLIVTGLTYIFNDY 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDD-------LYIKISKYNPN 167
           + P           KA      S++E+N+        R  D          +  ++    
Sbjct: 137 VAPAASYEANATMTKALRPNRKSFIEDNIIYPEYGKVRPPDGGEAQTVLRRLFYAERFNG 196

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             + G+ I+D    + ++I  +++ S ++++      +G ++   P     +I++F+   
Sbjct: 197 QEMLGLTILDRTQPEVNQIITSETASWNIEKNIWDFYNGTIYLIDPNGSYRNIVRFQHQQ 256

Query: 226 -------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                    L     + S + L+   + L  L        +  P      + +  ++++ 
Sbjct: 257 LALPRTPLDLAFRGRDGSEMTLRQAREYLEIL------QLSGNPTKTRKLQVQIEQKISL 310

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               ++FG+I      +     Q       F    +    ++  S++   +       P+
Sbjct: 311 PFVCLVFGMIGAALGLRP----QNSNKATSFGICIVLIFSYYLLSFVTSSLGIGGVLTPL 366

Query: 339 LYLFLFCISSIF 350
           +  +L  I  + 
Sbjct: 367 MAAWLPNILGLT 378


>gi|264678996|ref|YP_003278903.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
 gi|262209509|gb|ACY33607.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
          Length = 369

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 139/367 (37%), Gaps = 25/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P     I+Q+  + Q       +    F           + K +P++     +F+V SRD
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVV-SRD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+   +     ++ +IL DG+          + I +FK Y +Q ++ N   I
Sbjct: 181 PGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAI 240

Query: 239 -VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             + A       L+  +              RS    RL      + F ++ +      +
Sbjct: 241 EEMAARSMPTKDLIGKDEP----------IARSVLAWRLGLPFAALNFVILGLAI---SS 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLF---LFCISSIFLL 352
           +  +      + I+L  +F V++    +              IL L    +  +S + LL
Sbjct: 288 VNPRAGNSSSLMIAL-FAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILIVSVLVLL 346

Query: 353 MIKKKYT 359
               +++
Sbjct: 347 ARHFRWS 353


>gi|193062108|ref|ZP_03043204.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|192932328|gb|EDV84926.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
          Length = 356

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|92115033|ref|YP_574961.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
 gi|91798123|gb|ABE60262.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
          Length = 386

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 129/365 (35%), Gaps = 23/365 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R I  +       ++ +    + ++     +      +IL  +  Y +P  + +V 
Sbjct: 31  RYLTREILATMAAVAGVLLLVIMGSRFIRYFGDAAQGDIPASILGTLMLYHLPGFMELVL 90

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F +        +  N+E+ ++   G S   L++  L+ A+L+++ + +    + P  
Sbjct: 91  PLSFFLGILLAFGQLYLNSEITVLVACGISPNRLLRVTLWPALLVALLVALCSLWLTPNG 150

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS--RDTQ 182
               + +  + +  L FS L+   F              N + + ++ +FI +   R   
Sbjct: 151 ARHNEMVLEEQKSRLDFSVLQPGRFQEFGSGRTAYTESLNDDRSRMESVFISERQPRSDG 210

Query: 183 THKIYY--AQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           T +     A  G   +D       ++L DGE +   P +     ++F +Y ++   A+  
Sbjct: 211 TPETVVTRADGGYQTVDDDTGSRFLVLTDGERYSVEPGNHVAERVQFDTYAVRLSQASER 270

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +  A   +   LL                  +    RL+  L   +  +++++A    
Sbjct: 271 VDLQAAELTSTPQLL----------ERGGSEAWANLQWRLSMPL---MVPILTLLALPLS 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIK 355
            +  ++ +   +  ++ +              I + +      ++        + + M +
Sbjct: 318 RVNPRQGRFAKLLPAIFLHISYLSLLLAAQDAIARGSLAPTIGMWPIHLGYLLLGVWMTR 377

Query: 356 KKYTK 360
           +   +
Sbjct: 378 RDQRR 382


>gi|253686792|ref|YP_003015982.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753370|gb|ACT11446.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 371

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 138/364 (37%), Gaps = 30/364 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N+++ + G  +P ++ 
Sbjct: 2   IIIRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVISLLGLGVPEMVQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+  ++   I+   + 
Sbjct: 62  LILPLSLFLGVLMTFGRLYAESEITVMHACGLGKRVLLKAALALAVFTAVIATINVMWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +++ A+A+     + L E  F        +        +  Q +F+   R + 
Sbjct: 122 PWSSRHQEEVLAEAKANPGMATLVEGQFQSAQGGNAVLFVGNVKGSEFQHVFLAQLRPSG 181

Query: 183 T--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I  +    Q + L++G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NARPSVVVADRGHIKQNEDGAQVVTLDNGSRYEGTALLRDFRITDFTNYQAVIGHQSVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L + + ++           R+EFH RLT  L  +I  L+ +       
Sbjct: 242 NNSDVQQMDMQTLWHSDAHDA----------RAEFHWRLTLILSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL-----FCISSI 349
             RQ +      +S+  +  ++  F  +   +  N       P+++++L     F I+ +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASKGKIDPMVWVWLTNLMYFGIAVM 344

Query: 350 FLLM 353
             L 
Sbjct: 345 LNLW 348


>gi|327398771|ref|YP_004339640.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181400|gb|AEA33581.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 18/355 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YIL+ +  SF++S   I  +  +  +++  +L+     S  +LLKI GY +  +
Sbjct: 2   LKKLDRYILKSLIVSFVISFFVIAVVMLIGDLVKLYDLLFGKGSSFIVLLKILGYTVVFL 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    V + ++ N+E+  I + G S   +  P    ++ + +FLF S   
Sbjct: 62  LAFIVPMALTIAINYVYSDLSNNSEITAIRSCGISLFRVYFPAFLFSVAVFVFLFYSIAF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + PK R + +   AK      ++ L+ N+F+   D +   I   +P+   L+ +F     
Sbjct: 122 VAPKARLSYRVEIAKTFRNKVYAALKPNMFYDKVDGVM-WIKNLSPDKKHLKDVFFA--- 177

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  KI+ A+ G        I+     V   SP         F  Y L   +       
Sbjct: 178 --QKGKIFLAKKGDFKDIPSGILAEFFNVKMYSPSKSGFEYGSFDRYELAFLTGRG---Y 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL-FPVIFGLISIVAADKRAL 298
            K N  N  F+      N   + +  +        R+ + +   +    +S++A      
Sbjct: 233 FKPNKNNTRFMSFGEVVNYYSKSKSKDAL-----YRINKIVSMSMSVFALSLIAFSFGIT 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFL 351
             +  K   I  SL + F  +              NPY+I +  +  F   S   
Sbjct: 288 FSRSGKSAGIVASLFLFFMFYIILMLSESLCDATGNPYFIYLPNVVAFVFGSYIF 342


>gi|300973446|ref|ZP_07172202.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|300410788|gb|EFJ94326.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291260|gb|EFU50620.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 356

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/354 (21%), Positives = 129/354 (36%), Gaps = 32/354 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  +  R   RQ +    + ++L      + G              IP L+L  
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|254282226|ref|ZP_04957194.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
 gi|219678429|gb|EED34778.1| queuine tRNA-ribosyltransferase [gamma proteobacterium NOR51-B]
          Length = 389

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 135/362 (37%), Gaps = 23/362 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+   I    L   + +  + +  + ++ +   +    + +ILL +  + +P+ 
Sbjct: 28  MRTL-KYLTGDILAHALAVSVVLFLVVFSGRFIRYLAEAAVGAITSDILLPVMLFKLPSF 86

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     L  +  ++EL+++   G     L   +L  A+  S+ +      
Sbjct: 87  FELILPLGLFIGILLSLGRLYADSELVVLKACGVGPGKLATYLLLPALAFSLVVGFLSLY 146

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVDSR 179
           + P+  +  + +    + A     L E  F +     ++      + +  +  IF+V+  
Sbjct: 147 LAPEGSARAQAMLDNPRSAEGLQQLSEGRFKKQRSGNFVSYAETISDDGVMHNIFVVEKS 206

Query: 180 DTQTHKI--YYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +  T +    YA +G + +D    R+ + L DG  +   P   D ++ KFK Y       
Sbjct: 207 EAGTARTRVTYADAGEVVVDPENGRRYLELRDGARYEGVPGQADYTVTKFKRYGELIPER 266

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     D   + LL  + +          + ++  + R +    PV+  +IS++A 
Sbjct: 267 EGGIRDNLKTDAISTRLLLSDFSP---------SAQAALYWRFS---LPVLVPVISLIAL 314

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIF 350
                  +R +   +  +L +    F G +     +   +   +++ +  +F      + 
Sbjct: 315 PLSRTDARRGRYAKLAPALLVFLAYFIGLTQARTAVESGDSGWWFVGVHLIFTLLAVVLT 374

Query: 351 LL 352
             
Sbjct: 375 FW 376


>gi|124514758|gb|EAY56270.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
          Length = 378

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 119/337 (35%), Gaps = 21/337 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F++  L +V +    Q L  +NL+ +   S+  +L++   + P  
Sbjct: 1   MKIIHRYLFVELLPPFVIGLLVLVVLILTQQTLMIMNLLVNKGLSIPTVLRLVMMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E+  +  +G     L+ P++  A L  +  F     
Sbjct: 61  LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            E     +++++ +          +   +F    D   I + +    + +QG+FI     
Sbjct: 121 AEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEGK 180

Query: 181 TQTHKI-YYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            ++      A+ GS+  +        I L  G + +          ++F SY L     +
Sbjct: 181 GKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQ---QFVRFSSYDLTIFGKS 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           + T       + L        N     P+   +   E   R   + +P    + + +   
Sbjct: 238 AGTTAKPPTIREL-------ENKIAGSPKPDVSLLRELEDRYKNYTYPFSCLIFAFLGIP 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                ++  K+     + +        F YI++ ++ 
Sbjct: 291 FGIYAKRSGKLAGFVFATASVI-----FFYILNTVDD 322


>gi|194426331|ref|ZP_03058886.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415639|gb|EDX31906.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183223|dbj|BAG66768.1| putative permease [Escherichia coli O111:H-]
          Length = 356

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 139/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I +   + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILLQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|70728449|ref|YP_258198.1| YjgP/YjgQ family permease [Pseudomonas fluorescens Pf-5]
 gi|68342748|gb|AAY90354.1| permease, YjgP/YjgQ family [Pseudomonas fluorescens Pf-5]
          Length = 372

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 128/347 (36%), Gaps = 24/347 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R I  +       ++ I    + ++ +   +S       L  I G+ +P  L ++ 
Sbjct: 5   RYLSREILLTLSAVSAVLLVIIMSGRFVKFLAQAASGALDPGSLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAALVALLVAWLSLSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVDSR---- 179
            +  + L  K      F  L    F  L+D   +    + + + T L G+FI + R    
Sbjct: 125 ANQFQLLLNKQDALTEFDTLVAGRFQALNDGTRVTYTEQLSEDRTNLGGVFISEKRLGQQ 184

Query: 180 -DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   +  A+ G  D      + +IL +G  +  +P   +  ++K+ +Y +  E  + 
Sbjct: 185 KKDEGISVLVAEKGHQDIRPDGNRYLILENGYRYDGNPGEANYRVIKYDTYGVLLERPDV 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  V   +    + L+  +              R+E   RL+  L   I  L+++     
Sbjct: 245 SDEVTDRDAMPTADLIGKDD----------LRARAELQWRLSLPLLVFIVTLMAVP--LS 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           R   RQ + +  I   L   +  +      +    +     P L L+
Sbjct: 293 RVNPRQGRFLKLIPAIL--LYMAYLTILIAVRGALEKGKISPALGLW 337


>gi|262277384|ref|ZP_06055177.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
 gi|262224487|gb|EEY74946.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
          Length = 360

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 115/294 (39%), Gaps = 12/294 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y      + F++  L +  + W  Q  + + LV+     +++  K    + P +L
Sbjct: 4   NKVYRYFFIEFFKLFILINLSLSLLIWFTQAARLLELVTDYGNPISVYAKYLLLIYPKIL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                  F +    + +    + EL I   +G S+  + +  +++ I+  I        I
Sbjct: 64  DNTFLLSFIISLFFLYSKFETDNELQIYWLSGISKFKIHQLCIYIGIVSLIINLSFSIFI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +   ++  L  + ++E  F      L + + K N    ++GIFI      
Sbjct: 124 APWSSYQGRMILGNSKFTLINAVVKEKNFNSPLKGLTVYVEKNNKQGNIEGIFIY----- 178

Query: 182 QTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN-SSTI 238
           +  +   A+ G +  D +   + L +G    K+     ++ +KF++           +T 
Sbjct: 179 EKTRTITAEKGEVLSDENGSYLKLINGTTQEKTGSK--VNFLKFQNTIFDFSKYQIKNTT 236

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG-LISIV 291
             K +++NL +L+N   N    +   +E  R E + R+ +    +I   LIS +
Sbjct: 237 APKYSERNLYWLINNLDNKKISKARKIE-LREEINSRIIKPFMILILTSLISFL 289


>gi|26249548|ref|NP_755588.1| hypothetical protein c3717 [Escherichia coli CFT073]
 gi|170018761|ref|YP_001723715.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|254162934|ref|YP_003046042.1| hypothetical protein ECB_02856 [Escherichia coli B str. REL606]
 gi|300916913|ref|ZP_07133616.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923637|ref|ZP_07139665.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300950816|ref|ZP_07164702.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958361|ref|ZP_07170502.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|301643654|ref|ZP_07243695.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|307139670|ref|ZP_07499026.1| hypothetical protein EcolH7_16283 [Escherichia coli H736]
 gi|312972759|ref|ZP_07786932.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643681|ref|ZP_08344812.1| putative permease [Escherichia coli H736]
 gi|26109956|gb|AAN82161.1|AE016766_249 Hypothetical protein c3717 [Escherichia coli CFT073]
 gi|169753689|gb|ACA76388.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378536|emb|CAQ33322.1| ybl136 [Escherichia coli BL21(DE3)]
 gi|253974835|gb|ACT40506.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978990|gb|ACT44660.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|284923007|emb|CBG36099.1| putative permease [Escherichia coli 042]
 gi|300314945|gb|EFJ64729.1| hypothetical protein HMPREF9547_04075 [Escherichia coli MS 175-1]
 gi|300415883|gb|EFJ99193.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420078|gb|EFK03389.1| hypothetical protein HMPREF9548_01830 [Escherichia coli MS 182-1]
 gi|300449911|gb|EFK13531.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|301078038|gb|EFK92844.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|309703416|emb|CBJ02755.1| putative permease [Escherichia coli ETEC H10407]
 gi|310332701|gb|EFP99914.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936015|gb|EGB32310.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941918|gb|EGB38097.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|331037152|gb|EGI09376.1| putative permease [Escherichia coli H736]
 gi|332344939|gb|AEE58273.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 356

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y +  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLIDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|323188590|gb|EFZ73875.1| hypothetical protein ECRN5871_3009 [Escherichia coli RN587/1]
 gi|324005417|gb|EGB74636.1| hypothetical protein HMPREF9532_04927 [Escherichia coli MS 57-2]
          Length = 356

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|91212394|ref|YP_542380.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|117625286|ref|YP_854458.1| putative permease [Escherichia coli APEC O1]
 gi|218560055|ref|YP_002392968.1| hypothetical protein ECS88_3362 [Escherichia coli S88]
 gi|218691271|ref|YP_002399483.1| hypothetical protein ECED1_3630 [Escherichia coli ED1a]
 gi|237706273|ref|ZP_04536754.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073968|gb|ABE08849.1| hypothetical protein UTI89_C3402 [Escherichia coli UTI89]
 gi|115514410|gb|ABJ02485.1| putative permease [Escherichia coli APEC O1]
 gi|218366824|emb|CAR04594.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|218428835|emb|CAR09636.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
 gi|226899313|gb|EEH85572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294492595|gb|ADE91351.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625416|gb|ADN69720.1| hypothetical protein UM146_01455 [Escherichia coli UM146]
 gi|315288787|gb|EFU48185.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951497|gb|EGB47372.1| permease YjgP/YjgQ family protein [Escherichia coli H252]
 gi|323957869|gb|EGB53583.1| permease YjgP/YjgQ family protein [Escherichia coli H263]
          Length = 356

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|323496138|ref|ZP_08101198.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
 gi|323318882|gb|EGA71833.1| hypothetical protein VISI1226_19659 [Vibrio sinaloensis DSM 21326]
          Length = 366

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 123/355 (34%), Gaps = 19/355 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ +      ++ +   +       ++L I G  IP +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLLLVFISQTFIKVLGDATDGDIPARLILAIVGLNIPQMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  + LA + +     +   + 
Sbjct: 62  LMLPMSLYLGILLTFGRLYSESEITVMNATGMGSKFLIRAAMSLAFITTALAAFNTLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L+   F R  D   +       +N L  +F+     RD
Sbjct: 122 PWSQEREAQLIEQVAAESSVDLLKAGQFQRTPDGSSVVFIDSIKDNQLNNVFVAQLRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + ++ SG +      RQ I+++DG  +   P   D  + +F+ Y+          
Sbjct: 182 AILPSVMFSNSGEVKEHSDGRQMIVMHDGTRYEGIPTRLDYMVTEFEQYSGLIGQREVEA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+  +  +           ++E   R++     +   L++++     A
Sbjct: 242 KRRGWGAVPTLDLIESSDLSA----------KAELQWRISL-FVCI--PLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
           +  ++ +   +  ++   F  F   S     IE       I ++   F +    +
Sbjct: 289 VNPRQGRFAKMGPAILAYFVYFISISTTKSAIEDGNIPAAIGMWPINFALLVAAI 343


>gi|255020899|ref|ZP_05292955.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
 gi|254969690|gb|EET27196.1| Predicted permease [Acidithiobacillus caldus ATCC 51756]
          Length = 372

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 138/366 (37%), Gaps = 18/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      ILR + R F+  CL ++ I  + Q+ Q ++ V+S    L + L++ G   PT+
Sbjct: 1   MSRIHARILRDLLRVFVFGCLLVLGILAIGQLSQLLSQVASGQLPLGVTLQLLGLATPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P  F      V +++ R+ E++ I + G S + L++ +    +++++   +    
Sbjct: 61  LVTVLPLAFFFALYLVFSNLYRSNEMMAIRSAGLSLLDLLRALALPILVIALLEALLSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDS 178
             P  +  ++  S +   A   + ++   F R+     + + +  P   +  + IF+ D 
Sbjct: 121 WSPAAQRQLQAESLRLANAAAEALIQPGSFARIAGGHILYVGQSAPGSEHRYREIFV-DL 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  I  A  G I  D+     ++L  G  +   P +    I+ F  Y +   +   
Sbjct: 180 GGKGEPDIATAAFGEIRKDQDGGIALVLIQGHRYLGQPGTAGFKILSFVHYRIALAAPQG 239

Query: 236 STIVLKANDQNLSF--LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           S      +DQ + +  L  P        P       +E   RL   L   +  L++I  A
Sbjct: 240 S------SDQGIHWAALDLPQVLQALREPRYARHALAELEWRLIWPLLIPVLALLAIPLA 293

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSIFL 351
                 R   +     + +           ++   I   +   +  + ++ L   +    
Sbjct: 294 FGGP--RGAGRASGALLGILTLLAANNLLVFLKEGIIQGRIGGFPGLFWVLLLLGALAAY 351

Query: 352 LMIKKK 357
              +++
Sbjct: 352 AFWRRQ 357


>gi|147673657|ref|YP_001217998.1| hypothetical protein VC0395_A2082 [Vibrio cholerae O395]
 gi|262167531|ref|ZP_06035236.1| predicted permease [Vibrio cholerae RC27]
 gi|146315540|gb|ABQ20079.1| putative membrane protein [Vibrio cholerae O395]
 gi|227014390|gb|ACP10600.1| putative membrane protein [Vibrio cholerae O395]
 gi|262023984|gb|EEY42680.1| predicted permease [Vibrio cholerae RC27]
          Length = 366

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 120/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +  VS      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|24114288|ref|NP_708798.1| hypothetical protein SF3027 [Shigella flexneri 2a str. 301]
 gi|30064335|ref|NP_838506.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|24053444|gb|AAN44505.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042592|gb|AAP18316.1| hypothetical protein S3228 [Shigella flexneri 2a str. 2457T]
 gi|281602371|gb|ADA75355.1| putative permease [Shigella flexneri 2002017]
 gi|313648098|gb|EFS12544.1| hypothetical protein SF2457T_3698 [Shigella flexneri 2a str. 2457T]
 gi|332752656|gb|EGJ83041.1| hypothetical protein SFK671_3614 [Shigella flexneri K-671]
 gi|332753042|gb|EGJ83426.1| hypothetical protein SF434370_3221 [Shigella flexneri 4343-70]
 gi|332765462|gb|EGJ95680.1| hypothetical protein SF293071_3544 [Shigella flexneri 2930-71]
 gi|332999939|gb|EGK19522.1| hypothetical protein SFK218_4003 [Shigella flexneri K-218]
 gi|333014895|gb|EGK34240.1| hypothetical protein SFK304_3820 [Shigella flexneri K-304]
          Length = 356

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 140/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A  GS+D+               SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRA--GSVDVVDP------------SPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLILVARDFS 349


>gi|300905893|ref|ZP_07123626.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|301304161|ref|ZP_07210277.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|307310385|ref|ZP_07590033.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|300402362|gb|EFJ85900.1| hypothetical protein HMPREF9536_03885 [Escherichia coli MS 84-1]
 gi|300840574|gb|EFK68334.1| hypothetical protein HMPREF9347_02761 [Escherichia coli MS 124-1]
 gi|306909280|gb|EFN39775.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062299|gb|ADT76626.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315256879|gb|EFU36847.1| putative permease [Escherichia coli MS 85-1]
 gi|323377116|gb|ADX49384.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 356

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLVQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|307294585|ref|ZP_07574427.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879059|gb|EFN10277.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 406

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 134/362 (37%), Gaps = 18/362 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMMPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLAMSSELDVMRAVGLSYGRLLRVPYMYAIALALLNFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F  L   + ++I    +    LQGIF+        
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAMGKDGQ 185

Query: 184 HKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                A  G      D D     L DG +   +P  K   I+ F S+ L  +        
Sbjct: 186 TVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIEKFR 245

Query: 240 LKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +  D+  +   L    ++P    +L    R+ FH R+ +     +  ++ +  A     
Sbjct: 246 GRDVDREKTIPELVMIGHDPGTPDKLRNEIRANFHFRMVE-----VAMMLLLPLAALAFA 300

Query: 299 VRQRKKIHPIFISLSISFGVFWG-----FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++    + + LSI F V +         +    + +P  I  L+      + + L M
Sbjct: 301 IPPKRSTSALGVFLSIVFIVTYHKVNEYGQGVGSLGKIDP--IIALWGPFLLFAGLILWM 358

Query: 354 IK 355
             
Sbjct: 359 YH 360


>gi|258622808|ref|ZP_05717826.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584996|gb|EEW09727.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 125/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +F  +I   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPVNAALLFAALIVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|145631588|ref|ZP_01787354.1| predicted permease [Haemophilus influenzae R3021]
 gi|144982788|gb|EDJ90314.1| predicted permease [Haemophilus influenzae R3021]
          Length = 367

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 127/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEAAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|254251665|ref|ZP_04944983.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
 gi|124894274|gb|EAY68154.1| hypothetical protein BDAG_00857 [Burkholderia dolosa AUO158]
          Length = 364

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 139/366 (37%), Gaps = 24/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEVDPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K  P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +Q+G  +  +     ++L DG  +  +P   +  IM+F+ Y ++  S     
Sbjct: 182 GKV-NVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPIVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   +    L  L NP  +N            +EF  R    L  +   ++ I  A    
Sbjct: 241 VPTTSGTPTLELLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLA--YQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLM 353
             R+ + I+ + +++ I        + +  +IEQ      +    L++ +  I +    +
Sbjct: 288 NPRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVAFIFWL 346

Query: 354 IKKKYT 359
             +   
Sbjct: 347 RVRNRP 352


>gi|294012648|ref|YP_003546108.1| putative permease [Sphingobium japonicum UT26S]
 gi|292675978|dbj|BAI97496.1| putative permease [Sphingobium japonicum UT26S]
          Length = 407

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 134/363 (36%), Gaps = 20/363 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R I    L + +    +  + ++L   + V++    ++++ ++   ++P  L + 
Sbjct: 6   DRYLARLIALPMLGTLVISAMLLVLDKMLSLFDFVAAEGGPVSVVWRMLANMMPEYLSLG 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +        +  ++EL ++   G S   L++     AI L++  F     ++P 
Sbjct: 66  IPIGLMLGILLAFRKLALSSELDVMRAVGLSYGRLLRVPYMFAIALALLNFGIVGFVQPL 125

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVDSRDTQT 183
            R   + L  + +     + ++   F  L   + ++I    +    LQGIF+        
Sbjct: 126 SRHAYEALRFELRSGALGASIKVGEFTNLGKRMTLRIERSLDEGRNLQGIFVRAVGKDGQ 185

Query: 184 HKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                A  G      D D     L DG +   +P  K   I+ F S+ L  +        
Sbjct: 186 TVAVTAAQGEFLATDDPDTIIFRLRDGVLVNDAPKYKSPRILSFSSHDLPIDLPQIERFR 245

Query: 240 LKA--NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +    ++ +  L+    ++P    +L    R+ FH R+ +     +  ++ +  A    
Sbjct: 246 GRDVDREKTIPELVTIG-HDPATPEKLRNEIRANFHFRMVE-----VAMMLLLPLAALAF 299

Query: 298 LVRQRKKIHPIFISLSISFGVFWG-----FSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            +  ++    + + LSI F V +         +      +P  I  L+      + + L 
Sbjct: 300 AIPPKRSTSALGVFLSIVFIVTYHKVNEYGQGVGSLGRIDP--IIALWGPFLLFAGLILW 357

Query: 353 MIK 355
           M  
Sbjct: 358 MYH 360


>gi|103487657|ref|YP_617218.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
 gi|98977734|gb|ABF53885.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
          Length = 402

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 133/356 (37%), Gaps = 9/356 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R I    + + +    +  + ++L+  + V++    ++++ ++   LIP  L +
Sbjct: 7   IDRYIARLIFFPMVGTLVLSAMLLVLEKMLRLFDFVATEGGPVSVVWRMLANLIPEYLSL 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +  ++EL ++   G S   L++     A+ L+         I+P
Sbjct: 67  GIPIGLMLGILLAFRRLATSSELDVLKGVGMSFGRLMRMPYVYAVGLAALNLAIVGFIQP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSRDTQ 182
             R   + L  + +     + ++   F RL + + ++I + YN   +L+GIF+   +   
Sbjct: 127 YARYAYEGLQFELRSGALGASIKVGEFTRLGERMTLRIEESYNEGRSLRGIFVRGEQRDG 186

Query: 183 THKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 A  G      D +   + L+ G +  +SP      ++ F ++ L          
Sbjct: 187 QRVSATASRGQFLATDDPETIILRLSQGVLIHESPKFAVPRVLTFDNHDLPIPLPRIEAF 246

Query: 239 VLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            L+     +  +  L     +        LE+ R+ FH R+ + +   +  LI++  A  
Sbjct: 247 RLRGGADREMTIPELFVAGKDRRQSEQTRLES-RANFHFRIVEVMSMFLIPLIAVALAVP 305

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                    +    + L     +      +  +   +P     +   LF   +I++
Sbjct: 306 PKRSTSSLGVFLSIVLLVTQHKINQYAEDLGARGAVDPLIALWVPFLLFAALAIWM 361


>gi|294637821|ref|ZP_06716093.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
 gi|291089020|gb|EFE21581.1| inner membrane protein YjgP [Edwardsiella tarda ATCC 23685]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 132/348 (37%), Gaps = 25/348 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  LIK  + LA         +   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLGKSVLIKAAMVLAFFTGALALANAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-- 180
           P       ++ A+A+     + L E  F    D  Y+       +     +F+   R   
Sbjct: 122 PWSSLHSDEVMAEAKANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHDVFLAQLRPSG 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +Q   +  A SG +       Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGGQKVVLDSGTRYEGTAMLRDFRITDFVDYSALIGHKSTML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++S L + +  +          +R+EFH RLT     ++  L+ +       
Sbjct: 242 DPNNADQASMSALWHSDEPS----------FRAEFHWRLTLVFSVLVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLF 342
             RQ +      +S+  +  ++  F  +   +  N       P+++++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPMIWMW 332


>gi|157156628|ref|YP_001464444.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|256019096|ref|ZP_05432961.1| hypothetical protein ShiD9_09279 [Shigella sp. D9]
 gi|332280199|ref|ZP_08392612.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|157078658|gb|ABV18366.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|332102551|gb|EGJ05897.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 356

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 140/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L  +  + S
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHLKPLDQS 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V +          +  P +            +E   R ++ L      +  +  +  R
Sbjct: 240 PNVKRKAKSVTELARSAFPAD-----------HAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 IKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|329118130|ref|ZP_08246842.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465790|gb|EGF12063.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 431

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 128/347 (36%), Gaps = 21/347 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
            ++ +  + +   + I+ +    Q +  +   +    + + +  + G+    + P++   
Sbjct: 74  FIKELTYTAVGIFVVILAVLVSTQAVNLLGRAADGRVAADAVAALIGFWTLGMTPLLLVL 133

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    VLT   R++E+ +  + G S    ++PVL  A+  +  +   +  + P    
Sbjct: 134 TAYISVLTVLTRFWRDSEMAVWLSCGLSLKQWLRPVLAFALPFAALVAAMQLAVLPWAEL 193

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSRDTQTH 184
             ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  D    
Sbjct: 194 RSREFAELLKQKQELSLVEAGEFRTLGKRNGRVYFVETFDTESGVMKNLFLREQDDKGRE 253

Query: 185 KIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSSTIVLK 241
            + +A+ G   L   ++ + L  G  +   P   D + + F+  +L    +      V  
Sbjct: 254 NVVFAKEGRFALTDHKRTLELTQGYRYGGIPGEADYNRVGFEHLSLVISTTPKIVNPVDH 313

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                 + L+  +             YR+E   R++  L  VI   ++I+A        +
Sbjct: 314 RRTIPTARLIGSDNP----------QYRAELMWRVSLPLAAVI---LAILAVPLSYFNPR 360

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCI 346
               + I  ++        G + + + IE  +  ++   L L +  +
Sbjct: 361 TGHTYNILFAIGFFLVYQNGLTLLRNAIENGKIGFWAGFLPLHILML 407


>gi|114776266|ref|ZP_01451311.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
 gi|114553096|gb|EAU55494.1| hypothetical protein SPV1_01062 [Mariprofundus ferrooxydans PV-1]
          Length = 386

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 140/358 (39%), Gaps = 14/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y+LR     F    +F++ +  + + L+ +  VS + E+ ++++ +    +P  L 
Sbjct: 2   TLDRYMLRLWLGPFFGGLVFVLAVMLLARALKLLGTVSDTAEAWSLIVDLLALTMPFFLL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P  F +   N +T + +++E+ ++  +G S   + +    +  LL + L     +  
Sbjct: 62  QIVPMAFFLSLQNTITGLQQSSEMDVLRGSGLSYGRMFRVFFIVVPLLWLGLTYIAMVQL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+ +     + AK              F R  D + + +   +   T  G+ + D R   
Sbjct: 122 PQGQLGFNNILAKIYAMKGAISFAPQRFTRGLDGITVYVDGEDSEGTYHGLILEDHR-GG 180

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              IY A+S   D+  + ++L   +  R      D  ++ F  Y +       +  +L +
Sbjct: 181 VSVIYTAKSARFDMGGEYLLLKLKDGVRLEGEGADQRMLAFDRYQVSIALPAGNRKILHS 240

Query: 243 ND----QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           ND      +  L +   N+ +          +E+++RL      ++    ++  +     
Sbjct: 241 NDHVTMMTVPELWHAMHNSQS------GAAVAEWNRRLLMPTTTLVLLFFALPLSL---T 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            ++  K   +   +++   V+     +  ++ Q  +    +++    +    + + K+
Sbjct: 292 QKRSGKAGSMIGGIALLVMVYNLQLLLYQQVNQGGFPGWSMWMGQALLLFTGMFLSKR 349


>gi|262401791|ref|ZP_06078356.1| predicted permease [Vibrio sp. RC586]
 gi|262351763|gb|EEZ00894.1| predicted permease [Vibrio sp. RC586]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAGFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG++      RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SVLPSVMFSNSGAVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 TGRDWEALPTLSLL----------KNSDLQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +F  +I   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTLS-ATKSAIEDGSLPVIIGLWPVNAALLFAALIVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|260582802|ref|ZP_05850588.1| permease [Haemophilus influenzae NT127]
 gi|260094128|gb|EEW78030.1| permease [Haemophilus influenzae NT127]
 gi|309972900|gb|ADO96101.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
           R2846]
          Length = 367

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 126/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|260845740|ref|YP_003223518.1| hypothetical protein ECO103_3664 [Escherichia coli O103:H2 str.
           12009]
 gi|257760887|dbj|BAI32384.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 356

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L ++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALYVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|222034703|emb|CAP77445.1| hypothetical protein LF82_488 [Escherichia coli LF82]
 gi|312947541|gb|ADR28368.1| hypothetical protein NRG857_14790 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 356

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|220935307|ref|YP_002514206.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996617|gb|ACL73219.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 367

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 130/349 (37%), Gaps = 23/349 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +  +     L ++ I     + + +   +      ++LL +        L
Sbjct: 4   SILTRYLVREVLLTQAAVTLVLLLIIVGGTVARMLREAAEGRIPADVLLPMVALGSVRGL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +     L  + +++E+  +   G     L + + ++ + L + L +     
Sbjct: 64  ILLLPVSLFLALMLSLGRLYKDSEMAAMKACGVGPEQLYRAIAWMTVPLLVMLTVLVFWG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNN-TLQGIFIVDSR 179
            P     I Q+   A+       +    F           I     +  T++G+FI  SR
Sbjct: 124 SPLASQGIDQIRIDAEQRSDLVGIAPGRFTESRATGQVFFIEGLAGDGNTMRGVFIR-SR 182

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +  ++  A+ G   +D    ++ ++L+DG  +R +P S++  I+ F+++ L+      
Sbjct: 183 GPEGDEVVTARRGETRVDPLTGQRYLVLHDGYRYRGAPGSQEFHILAFETHGLRVPDPTG 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST   K +  + + L                ++R+E H R+   +   +  L ++     
Sbjct: 243 STRRGKVDSLSTAELWQ----------STNLSHRAELHWRIAMPVS--MVLLAALALPLS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYL 341
                +  +   +  ++ +   ++  F  +        Q P ++ + ++
Sbjct: 291 HTSNPRSGRFGKLTAAIGVYI-LYANFLILSKSWFASGQTPAWLGMWWV 338


>gi|68250307|ref|YP_249419.1| permease [Haemophilus influenzae 86-028NP]
 gi|145633639|ref|ZP_01789366.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           3655]
 gi|145639139|ref|ZP_01794746.1| predicted permease [Haemophilus influenzae PittII]
 gi|148825753|ref|YP_001290506.1| permease [Haemophilus influenzae PittEE]
 gi|229847325|ref|ZP_04467427.1| predicted permease [Haemophilus influenzae 7P49H1]
 gi|260581045|ref|ZP_05848867.1| permease [Haemophilus influenzae RdAW]
 gi|68058506|gb|AAX88759.1| predicted permease [Haemophilus influenzae 86-028NP]
 gi|144985516|gb|EDJ92332.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           3655]
 gi|145271701|gb|EDK11611.1| predicted permease [Haemophilus influenzae PittII]
 gi|148715913|gb|ABQ98123.1| predicted permease [Haemophilus influenzae PittEE]
 gi|229809750|gb|EEP45474.1| predicted permease [Haemophilus influenzae 7P49H1]
 gi|260092285|gb|EEW76226.1| permease [Haemophilus influenzae RdAW]
 gi|301170459|emb|CBW30066.1| conserved inner membrane protein [Haemophilus influenzae 10810]
 gi|309750720|gb|ADO80704.1| Lipopolysaccharide export permease, LptF [Haemophilus influenzae
           R2866]
          Length = 367

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 126/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|217967689|ref|YP_002353195.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
 gi|217336788|gb|ACK42581.1| permease YjgP/YjgQ family protein [Dictyoglomus turgidum DSM 6724]
          Length = 356

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 133/360 (36%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y L+     F +  L    I  V  +   ++LV + +  L   L++    IP  
Sbjct: 1   MKIISRYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARSIPLKTALELFITKIPPY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V+   + + E++ +  +G S    +  +L  ++   + +F     
Sbjct: 61  LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILMFSLSAQLIMFYVNEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + PK     K L  KA   +      EN+FF  ++  Y    K +P N   + I +++  
Sbjct: 121 VAPKAYEREKILMNKAYNNVIMPS-RENVFFNENNSFYFF-RKVDPKNKKFEDILLIELL 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    ++      ++  + +     +GEV+  +   + I   KFK Y +    A    + 
Sbjct: 179 EKGNVRLIIHAEKALWDEFKGWTFMNGEVYSLNKEGEMIFQGKFKEYKVTLNRAPYQLVP 238

Query: 240 -LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K  ++   F +             L   ++EFH R+       IF ++++        
Sbjct: 239 SSKPVEEMSIFEIVDQIRLLEGTGLNLNNLKTEFHIRIALPFTCPIFAILALGLGLNMGK 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +        IS+ + + +F     +  K    PY++   +L       I + ++ KK 
Sbjct: 299 GGRSLSFGLSVISIFVYYIIFSIGRSLA-KAGIVPYFLGA-WLGNIVFLIIGIYLLNKKR 356


>gi|192359904|ref|YP_001981938.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
           japonicus Ueda107]
 gi|190686069|gb|ACE83747.1| putative permease, YjgP/YjgQ family superfamily [Cellvibrio
           japonicus Ueda107]
          Length = 366

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 137/360 (38%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + L     +  I    +    ++  +    ++++L  I  Y +  +L 
Sbjct: 2   IIFRYLSRDLLLTSLAVSAVLFTIFLTGKFSDYLDDAAQGKLAVDVLFTIIAYRMTGLLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        M  ++E++++   G S   L+   L  + L++  + +    + 
Sbjct: 62  LILPLGFYLAILLAYGRMYMDSEMVVLSACGISPGQLVGMTLVPSALIAAIVALFSFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTL-QGIFIVDSRD 180
           P      +Q  A+ +    F  ++   F  L    +   +   + +N L Q +F+     
Sbjct: 122 PLGAQLTEQTLAEQRNRSEFESMQPGRFQSLGQGKIMAYVESLSDDNRLLQHVFVAHQEG 181

Query: 181 TQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANS 235
             +  I  A++G      D  ++ ++LN G  ++  P + + +I +F+ +      + + 
Sbjct: 182 PDSSAIVVAETGTQMYRPDYGQRYLVLNQGYRYQGKPGTNEFTITRFEDWGRYLPPTTSV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I LK++ +  + L     N      +           R++  +  +I  L+++     
Sbjct: 242 AEIELKSDAKTTAQLFRAEDNESIATLQ----------WRISMPIMVLIATLLAVP--LS 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +   RQ + +  +   L   F + +  +      + N      +++       I LLMI 
Sbjct: 290 KTNPRQGRYLKMLPAILVYVFYLTFLINARSAITKGNLNPALGMWVVHLPFLVIALLMIN 349


>gi|221066429|ref|ZP_03542534.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
 gi|220711452|gb|EED66820.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
          Length = 369

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 140/365 (38%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +      + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATAVVLITVVMTMMLIRTLGQAYKGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L+KP+L  A  + +   +    + 
Sbjct: 62  TILGLSLFVAIVGSLSRMYRDSEMVIWFAAGQGLASLLKPLLRFAWPVILITAVLALGVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P     I+Q+  + Q       +    F           + K +P++     +F+V SRD
Sbjct: 122 PWSYQQIEQIKTQFQQRSDLDRIAPGEFQESAGGTRVFFVDKDSPSDMAASNVFVV-SRD 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+   +     ++ +IL DG+          + I +FK Y +Q ++ N   I
Sbjct: 181 PGKESVTSAKGAHLAVIKGQRMVILEDGQRMETRSDDGSVRITEFKEYGVQVDNDNPVAI 240

Query: 239 -VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             + A       L+  +              RS    RL      + F ++ +      +
Sbjct: 241 EEMAARSMPTKDLIGMDEP----------IARSVLAWRLGLPFAALNFVILGLAI---SS 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
           +  +      + I+L  +F V++    +              IL L    I ++ +L++ 
Sbjct: 288 VNPRAGNSSSLMIAL-FAFIVYYNLMTLGESWVSANKIGMWGILGLLHGSILTVSVLVLL 346

Query: 356 KKYTK 360
            ++ +
Sbjct: 347 ARHFR 351


>gi|160898977|ref|YP_001564559.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
 gi|160364561|gb|ABX36174.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
          Length = 375

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 132/363 (36%), Gaps = 16/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +        S + +L + GY +   LP
Sbjct: 2   LFDSSIRKELARSFGATVVVLITVVMTMMLIRTLGQAYKGNVSPSDVLLVMGYTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I    G    +L++P+L  A  +   + +    I 
Sbjct: 62  TILGLGLFVAVVGSLSRMYRDSEMVIWFAAGQGLASLLRPLLRFAWPVLAVIAVLGLGIL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I+Q+  + +       +    F           I K  P+ T      + + + 
Sbjct: 122 PWANQQIEQIKTQFEQRSDIDRIAPGEFQESAGGSRVFFIDKDVPSATAANNVFIVANER 181

Query: 182 QTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SST 237
               +  A+   ++     +  +L DG+          + I +FK Y  Q  S +  ++ 
Sbjct: 182 GRESVTSARGARLEVIKGERMAVLTDGQRMETQTSDGSVKISEFKEYGTQLGSGSNLAAA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KR 296
             + A       LL          P     YR+E   R+   L  + F ++ +  A    
Sbjct: 242 EEMAARSTYTHELL----------PRTEPIYRAELGWRIGLPLAALNFVILGLAVASVNP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                   +  +F  +     +  G +++       P    +L+     ++ + LL   K
Sbjct: 292 RAGGSGSLMLALFAFIVYYNLMTLGENWVASGKLSMPAMTALLHGGTLLLALLVLLARHK 351

Query: 357 KYT 359
           +++
Sbjct: 352 RWS 354


>gi|218701755|ref|YP_002409384.1| hypothetical protein ECIAI39_3475 [Escherichia coli IAI39]
 gi|227887687|ref|ZP_04005492.1| inner membrane protein [Escherichia coli 83972]
 gi|301019930|ref|ZP_07184065.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371741|emb|CAR19592.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835083|gb|EEJ45549.1| inner membrane protein [Escherichia coli 83972]
 gi|299882028|gb|EFI90239.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555075|gb|ADN47850.1| putative permease [Escherichia coli ABU 83972]
          Length = 356

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 138/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G +   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGNPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|160902798|ref|YP_001568379.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
 gi|160360442|gb|ABX32056.1| permease YjgP/YjgQ family protein [Petrotoga mobilis SJ95]
          Length = 1153

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 127/356 (35%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ +     F M  +  +    +  + Q   ++  +    + LL +  Y +P  
Sbjct: 1   MKKLFKYVSKEFIPPFFMGLIAFIVFVSLELLYQLSEIIVRNNVGFSKLLILIWYHLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P         V++ ++   E++ +   G     LI P + +++LLS F F   N 
Sbjct: 61  ISMGIPVGVLFGIFWVISKLSSANEIIALQTLGIPMKKLIIPFMTISLLLSFFTFALFNT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P      K+  A        + +EEN F  + D  Y+ + + +  +  L  + + + +
Sbjct: 121 IVPVSNYKAKEAMALYVYQRPQAQIEENQFVDVGDGRYLFVKQIDRESGILYDVLLYEVK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +     ++ AQ            + +G + R +        + F    L  +      + 
Sbjct: 181 N-DYTAVFNAQQAQ--KGPDGWYMKNGRMFRTNEDGFLDLDITFDQLQLDIQEDVEEFLN 237

Query: 240 L-KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K+ ++  S  L       +     +      +  +    L P++  ++ I  +    L
Sbjct: 238 FSKSANEMTSKELKEKITTFSKLGLDVSGLIVSYQSKFANSLAPLVICILGIALSLFLNL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +   +   F+ + I  G     S +  +   NP     +   +F I   FL ++
Sbjct: 298 TSKSWSVITTFVLVIIYQGSGAWLSALGKEHIINPTISVWIPNIIFGIIGTFLFLM 353


>gi|332969352|gb|EGK08377.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
          Length = 370

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 144/365 (39%), Gaps = 20/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++      +     ++ I    Q +  +   +S + +++ +  + G+ +  + P
Sbjct: 2   IYKKQFIKETTLVAIGIFSVVLAILLFTQGVNMLGRAASGSVAIDAVGALIGFWVLGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+ I  ++G      IKPVL  A+ L++ +   +  + 
Sbjct: 62  LLLVLTAYISILTVLTRYWRDSEMAIWLSSGLGLKQWIKPVLTFALPLAMLVAAMQLFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPN-NTLQGIFIVDSR 179
           P      ++     +     S +E+  F  L   ++    + +++     +  +FI +  
Sbjct: 122 PNAELRSREYGELLKQKQNLSLIEQGTFAELGKQNNRVYFVEQFDAEVGEMSRLFIREVD 181

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     + +AQSG +     +R+ ++L +G  +  +    D   + F+   L   +A   
Sbjct: 182 EKGRDSVVFAQSGHMKLEADNRRVLVLQNGYRYTGNAGQGDFEQVSFQELQLVINTAPKL 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +       S  L  + N           Y++E   R++  +  +   L+S++A    
Sbjct: 242 IEPINHRRTIPSQNLIGSDNP---------QYQAELMWRISLPITVI---LLSLLAIPIS 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIFLLMI 354
               +    + + +++        G + +   +E  + P++  +L + +   + IF+LM 
Sbjct: 290 YFNPRTGNSYHVVVAVGFFLFYQNGLTLLRDAVEDGKIPFWAGLLPMHIIMAACIFVLMK 349

Query: 355 KKKYT 359
            +   
Sbjct: 350 MRSMP 354


>gi|148827127|ref|YP_001291880.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Haemophilus influenzae PittGG]
 gi|148718369|gb|ABQ99496.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Haemophilus influenzae PittGG]
          Length = 367

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 126/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQQILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSALPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|295675785|ref|YP_003604309.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
 gi|295435628|gb|ADG14798.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
          Length = 365

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 133/363 (36%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESPSTHRVFFIEKMSPDQGHVENVFVTST-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  +++G ++  +     ++L +G  +   P   D  IM+F+ Y ++ +S     
Sbjct: 181 GGKVNVVVSKNGHVETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    ++ L NP   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGLPTMTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    ++I          + IL++ +  I +    M  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGIGLVILHVIVLGIVAFIFWMRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|153834578|ref|ZP_01987245.1| inner membrane protein YjgP [Vibrio harveyi HY01]
 gi|148869021|gb|EDL68066.1| inner membrane protein YjgP [Vibrio harveyi HY01]
          Length = 366

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 128/357 (35%), Gaps = 21/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLADASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++QL  +     +   L++  F    D   +       ++TL  +F+     RD
Sbjct: 122 PWSQDRVEQLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I +++G  +   P   +  I KF  Y           
Sbjct: 182 SILPSVMFSSSGEVKELSDGRQIITMHEGTRYEGVPTRVEYMITKFDQYEGLIGQREVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     + L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTADLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
           A+  ++ +   +  ++ I    F   S     +E       I ++     +  + +L
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIL 344


>gi|322514886|ref|ZP_08067903.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
 gi|322119140|gb|EFX91290.1| inner membrane protein YjgP [Actinobacillus ureae ATCC 25976]
          Length = 367

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 123/358 (34%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L      +E+ ++   G  +  L +   FL+I  +     +   + 
Sbjct: 62  FMLPLSLFVALLLTLGRFYTESEITVMRACGIGQSLLTQVAFFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIV--DSR 179
           P   +   ++ A+A+    FS L    F        + I   N   N L  I++   D +
Sbjct: 122 PWAINKQSEMLAEAKSNPRFSALSAGQFMT-AGGYVLFIENINNEQNKLNDIYVFQPDQQ 180

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+SG +       Q + L +   +  +  + D  I  F +Y       +  
Sbjct: 181 KKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTENTADFRISHFDNYQAYLGYQDVD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +        + + L+  + N            ++E   R           L++++A    
Sbjct: 241 SNEKLVQRADFNKLMTDSSNEA----------KAELQWRFA---LIFAVPLMALLAVPMS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLM 353
           ++  ++ +   +  ++ +    F   S +             ++ L       + ++M
Sbjct: 288 SVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVM 345


>gi|171316728|ref|ZP_02905940.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
 gi|171098078|gb|EDT42893.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
          Length = 363

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 139/365 (38%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  + +G  +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKV-NIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +      L NP  +N            +EF  R    L  +   ++ I        
Sbjct: 241 PTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ      +    L++ +  I ++   + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|145637645|ref|ZP_01793300.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           PittHH]
 gi|145269168|gb|EDK09116.1| molybdate ABC transporter permease protein [Haemophilus influenzae
           PittHH]
          Length = 367

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 127/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNIVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEAAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|269140438|ref|YP_003297139.1| putative permease [Edwardsiella tarda EIB202]
 gi|267986099|gb|ACY85928.1| putative permease [Edwardsiella tarda EIB202]
 gi|304560231|gb|ADM42895.1| Predicted permease [Edwardsiella tarda FL6-60]
          Length = 366

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 141/359 (39%), Gaps = 27/359 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA +      ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMALAFITGALALVNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-- 180
           P       ++ A+A+     + L E  F    D  Y+       +     +F+   R   
Sbjct: 122 PWSSLHSDEVMAEARANPGLASLAEGQFQPSQDGNYVLFVGNVKDKKFHNVFLAQLRPSG 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +Q   +  A SG +       Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++S L +    +          +R+EFH RLT     ++  L+ +       
Sbjct: 242 DPNNADQASMSALWHSQEPS----------FRAEFHWRLTLVFSVIVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
             RQ +      +S+  +  ++  F  +   +  N       P+++++   ++ ++LL+
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMW--GVNGLYLLL 341


>gi|161524006|ref|YP_001579018.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351233|ref|YP_001946861.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221199307|ref|ZP_03572351.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221205791|ref|ZP_03578806.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221211524|ref|ZP_03584503.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|160341435|gb|ABX14521.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335255|dbj|BAG44325.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|221168885|gb|EEE01353.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221174629|gb|EEE07061.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180592|gb|EEE12995.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 364

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 131/362 (36%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEVDPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIIVLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      + + A+ Q     S L    F     +     I K  P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSRLIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + +     + ++L DG  +  +P   +  IM+F+ Y ++  S     +
Sbjct: 182 GKVNVVVSQTGHTETTKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVVNV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRA 297
              ++      L NP  +N            +EF  R    L  +   ++ I  A     
Sbjct: 242 PTTSSTPTPELLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLAYQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    + I          +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVALHVVVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|172061426|ref|YP_001809078.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
 gi|171993943|gb|ACB64862.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
          Length = 363

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 139/365 (38%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  L + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  + +G  +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKV-NIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +      L NP  +N            +EF  R    L  +   ++ I        
Sbjct: 241 PTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ      +    L++ +  I ++   + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|190150428|ref|YP_001968953.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250152|ref|ZP_07336354.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253325|ref|ZP_07339474.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|189915559|gb|ACE61811.1| hypothetical protein APP7_1159 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648007|gb|EFL78214.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302651215|gb|EFL81369.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 367

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 122/358 (34%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ + +  Q++  +N   S     +++L + G  +P +  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLMFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L      +E+ ++   G  +  L K   FL+I  +     +   + 
Sbjct: 62  FMLPLSLFVALLLTLGRFYAESEITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIV--DSR 179
           P   +   ++ A+A+    FS L    F        + I   N   N L  I++   D +
Sbjct: 122 PWAINKQSEMLAEAKSNPRFSALSAGQFMT-AGGYVLFIENINNEQNKLNDIYVFQPDQQ 180

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+SG +       Q + L +   +  +    D  I  F SY       +  
Sbjct: 181 KKNRPSVVVAESGQLQGLPNGDQILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +        + + L+           +     ++E   R    L      L++++A    
Sbjct: 241 SNEKLVQRADFNKLM----------ADQSNEAKAELQWRFALIL---AVPLMALLAVPMS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLM 353
           ++  ++ +   +  ++ +    F   S +             ++ L       + ++M
Sbjct: 288 SVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVM 345


>gi|300931864|ref|ZP_07147161.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300460287|gb|EFK23780.1| conserved hypothetical protein [Escherichia coli MS 187-1]
          Length = 353

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 139/363 (38%), Gaps = 21/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   ++      +     
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYR----NLQLPLDQ 235

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L                   +E   R ++ L      +  +  +  R
Sbjct: 236 SPNVKRKAKSVTEL----------ARSAFPADHAELQWRQSRGLT--ALLMALLAISLSR 283

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 284 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 343

Query: 357 KYT 359
            ++
Sbjct: 344 DFS 346


>gi|258625833|ref|ZP_05720712.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582071|gb|EEW06941.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 366

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY           
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYD-----GLIGQ 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +K++D++   L        +         ++E   RL+     V   L++++     A
Sbjct: 237 REVKSSDRDWEAL-----PTLSLLKNSDLQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +   ++   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPVNAALLIAALVVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|145588807|ref|YP_001155404.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047213|gb|ABP33840.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 138/361 (38%), Gaps = 17/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L +V I     +++ +   ++   +   +L +        L 
Sbjct: 2   IFKQALRRELSLTTGGVFLVLVTIMITTLVIRILGFAANGAINPEDVLVLISLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VL    +++E+++   +G S   LI+P+L  A  L I + +    + 
Sbjct: 62  VLLTVSLFVATLIVLVRWYKDSEMIVWFASGLSISNLIRPILQFATPLIIIIALLALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYN-PNNTLQGIFIVDSRD 180
           P        +S + Q     S +    F      +    I + +   N ++ IF+ DS++
Sbjct: 122 PWANRESTLISQRFQQRDDVSMVSSGQFRESARAERVFFIEELDVDKNEVKNIFVADSKN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +      A +G I         ++L++G  +   P   D  I++F  YT +  S  +  
Sbjct: 182 GRVSVAV-ASAGYIQNSEDGEKSVVLHNGRRYEGQPTQPDFRILEFTDYTTKIRSKEALA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  ++ +S LLN         P  +   R+E   R+   L  +   LI+I  A    
Sbjct: 241 PPPRDREKTISELLNETE------PTTINPNRAELLWRIGLPLMALGLVLIAIPLA---Y 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIK 355
           +  +      +F ++ I        +   + + Q    +++ I  + L  +    +L+  
Sbjct: 292 VNPRLGNYTAMFYAILIYLIYSNLLNLTQNFVSQGKFGFFVGIWPIHLLALVIATILIRN 351

Query: 356 K 356
           +
Sbjct: 352 R 352


>gi|194333657|ref|YP_002015517.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311475|gb|ACF45870.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 444

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 104/260 (40%), Gaps = 11/260 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + L I+F+  +      I         L ++ ++    I  +
Sbjct: 1   MKIVDRYILKAHAAPFLFAFLTIIFVFTLQFFSLFIARFVGKGLDLLVISELILLQISWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T     ++   +E+ ++ + G S   +I PVL  A +L+  +    N+
Sbjct: 61  VVLAVPMAVLVSTLMAFGNLTNRSEIAVMRSGGLSMSRVILPVLIAASVLAFLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+     K L            L EN F    D   I +   +P+   L+G+ I +  
Sbjct: 121 VLPEANYQAKMLLRDITKTKPSFGLTENAFSSFIDGYSILVRDIDPDSGELRGVTIYEGT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISK-DISIMKFKSYTLQTESA- 233
                 +  A++GSI   + +    + L +GE+H     +K +  +M F  +     S  
Sbjct: 181 RDDYSTVITAETGSISFTQDSHYLIMELYNGEIHEMIMNTKEEYRLMSFSRHRFVFSSTG 240

Query: 234 ----NSSTIVLKANDQNLSF 249
                +    ++  D++L+ 
Sbjct: 241 YGFERTDPESVRRGDRDLAA 260



 Score = 39.9 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           +   L+ + +  +    +   Y  E+HK+       +IF L+    A    L ++     
Sbjct: 327 MLEELDASIDRISADRRMYNKYMVEYHKKYALSFACIIFVLVG---APLGVLAKRGGFGV 383

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              ++L+  F ++W    +   +       P   ++L  I   F+
Sbjct: 384 GAGLALAF-FVLYWALLILGEHLADRNLLHPGFAMWLANILMAFI 427


>gi|229524483|ref|ZP_04413888.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338064|gb|EEO03081.1| hypothetical protein VCA_002078 [Vibrio cholerae bv. albensis
           VL426]
          Length = 366

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLAEASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|28899417|ref|NP_799022.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839665|ref|ZP_01992332.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
 gi|260879348|ref|ZP_05891703.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260895693|ref|ZP_05904189.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260900265|ref|ZP_05908660.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28807653|dbj|BAC60906.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746808|gb|EDM57796.1| inner membrane protein YjgP [Vibrio parahaemolyticus AQ3810]
 gi|308087429|gb|EFO37124.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093070|gb|EFO42765.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308107549|gb|EFO45089.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|328471446|gb|EGF42341.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 366

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 123/357 (34%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++ L  +     +   L++  F    D   +       ++TL  +F+     RD
Sbjct: 122 PWSQDRVEHLYEQVAAENSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I + +G  +   P   +  I KF  Y           
Sbjct: 182 SVLPSVMFSSSGEVKELSDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     + L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTADLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E           PI  + L     
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIM 344


>gi|226946453|ref|YP_002801526.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226721380|gb|ACO80551.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 357

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 127/365 (34%), Gaps = 21/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y++    R  L+    +  I       + +   ++ T S  ++  I  Y +   
Sbjct: 1   MLLIERYVISEARRPLLVMLGILTSIFAAYSAERYLGEAANGTLSPEVVFDIVVYKVMIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +  ++E+  +   G S + L   V  LA+ +++ +      
Sbjct: 61  LEVLVPVALYVSVALGLGRLYHDSEITAVAAAGMSPLRLYGAVAILALPIAVGVTALSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYN-PNNTLQGIFIVDS 178
             P   +   QL  +++  L   +L    F    ++   I   + +   ++LQ + I D 
Sbjct: 121 GRPWAYANAYQLEQESKTELDIDHLLAERFNINAENGRMILAERVDRATDSLQDVLIFDG 180

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +++T   Y +Q   I   D D   + + +G  +           ++FK   +  +   +
Sbjct: 181 GESRTRL-YRSQEARIADPDPDDPVVEMTNGTAYSLQHDGTQDKRIEFKRLNIHLQPLET 239

Query: 236 S-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +     KA            P              +E   R ++ +   I  L++I    
Sbjct: 240 NMESRRKAASWQTLEASAGLPEQ------------AELQWRESRGVSTFILALLAIP--L 285

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R   R+ +    + ++   +   + G          +    P L+L    +  + L +I
Sbjct: 286 SRTAPRRGRFATLLPVTAVYAVIFYAGDICKSLVGNGSLPLTPGLWLVPLAMGLVLLALI 345

Query: 355 KKKYT 359
            ++  
Sbjct: 346 VRERA 350


>gi|156975868|ref|YP_001446775.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
 gi|156527462|gb|ABU72548.1| hypothetical protein VIBHAR_03634 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 129/357 (36%), Gaps = 21/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + +  +   S       ++  + G  +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFISVLAKASDGDIPAGLIFSVVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     L++  L LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLVQAALCLAIITSGVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++QL  + +   +   L++  F    D   +       ++TL  +F+     RD
Sbjct: 122 PWSQDRVEQLYDQVEAENSVDLLQKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I +++G  +   P   +  + KF  Y           
Sbjct: 182 SILPSVMFSSSGEVKELADGRQIITMHEGTRYEGVPTRVEYMVTKFDQYEGVIGQREVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       L+ +P+P             ++E   R++     +   L++++     
Sbjct: 242 KGRDWEAYPTLDLIGHPDPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
           A+  ++ +   +  ++ I    F   S     +E+  +   I ++     +  + +L
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLAISATKSALEEGTFPAAIGMWPINAMLLIVAIL 344


>gi|145635439|ref|ZP_01791140.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145267313|gb|EDK07316.1| predicted permease [Haemophilus influenzae PittAA]
          Length = 367

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 127/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    + +  D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYQAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ N ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLNSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|229845239|ref|ZP_04465372.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
           6P18H1]
 gi|229811834|gb|EEP47530.1| hypothetical protein CGSHi6P18H1_02459 [Haemophilus influenzae
           6P18H1]
          Length = 367

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 127/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNIVKDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QTKPSVVTAEKGELIALPNGDQVLNLKNTKRVEGTSVLPDFRITHFDEYRAYLGYQAAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEAAELTLSQLIDLDSSS----------VKAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGAAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|312142810|ref|YP_003994256.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
 gi|311903461|gb|ADQ13902.1| permease YjgP/YjgQ family protein [Halanaerobium sp. 'sapolanicus']
          Length = 366

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 120/364 (32%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK+ + YI + +   FL        I     ++ +           +  LL++    +P 
Sbjct: 1   MKTVDKYIYKELIAPFLFGVAAFTGIFIGTDLIFEVTEYYIEWGVDVLTLLRLFFLSLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + T      ++ ++E+  +   G S + ++ P L + ++ S        
Sbjct: 61  IIILTFPMAALLGTIMAYNRLSGDSEITAMRAGGISIMAIVLPALIMGLVTSGITIAITE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNP-NNTLQG 172
            I P      +Q+  + +        + +LF    D      D  +    +N  N  +  
Sbjct: 121 FIVPGANYQAEQIIHQFKHGERRPDTQYDLFLTPLDSRTSRPDYMLYAKSFNAENGRMTD 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--- 229
           + +    D +   +  A+      D       +G V+      +  S ++F  Y  +   
Sbjct: 181 VVLQSFEDGRPRSVLEAEEALWLRD--GWSFFNGTVYFLDREDRSPS-LEFSQYRSREDI 237

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              A +  +    ++ N+  L N +      +       R EFH R +  +   IF L++
Sbjct: 238 HSPAQAGKLGKDIDEMNIREL-NEHIALLEQQGRAAYEERVEFHHRFSVPMASFIFALLA 296

Query: 290 IVAADKRALVRQRK-KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                K               I + I + +      +  +    P+    L   +  +  
Sbjct: 297 APLGIKPQRSAGSATGFGISIIIIFIYYVLMTIGDALGSQGTIEPWLGAWLQNIIIFLVG 356

Query: 349 IFLL 352
             LL
Sbjct: 357 SGLL 360


>gi|15642496|ref|NP_232129.1| hypothetical protein VC2500 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153215710|ref|ZP_01950091.1| membrane protein, putative [Vibrio cholerae 1587]
 gi|153822404|ref|ZP_01975071.1| membrane protein, putative [Vibrio cholerae B33]
 gi|153831206|ref|ZP_01983873.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|227082619|ref|YP_002811170.1| hypothetical protein VCM66_2422 [Vibrio cholerae M66-2]
 gi|229507442|ref|ZP_04396947.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
 gi|229509633|ref|ZP_04399114.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
 gi|229516758|ref|ZP_04406204.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
 gi|229521565|ref|ZP_04410983.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
 gi|229606948|ref|YP_002877596.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
 gi|254291418|ref|ZP_04962210.1| membrane protein, putative [Vibrio cholerae AM-19226]
 gi|254851045|ref|ZP_05240395.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744521|ref|ZP_05418473.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297581347|ref|ZP_06943270.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298500669|ref|ZP_07010473.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657081|gb|AAF95642.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|124114628|gb|EAY33448.1| membrane protein, putative [Vibrio cholerae 1587]
 gi|126520047|gb|EAZ77270.1| membrane protein, putative [Vibrio cholerae B33]
 gi|148873313|gb|EDL71448.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|150422608|gb|EDN14563.1| membrane protein, putative [Vibrio cholerae AM-19226]
 gi|227010507|gb|ACP06719.1| putative membrane protein [Vibrio cholerae M66-2]
 gi|229341159|gb|EEO06163.1| hypothetical protein VIF_002101 [Vibrio cholerae TM 11079-80]
 gi|229345821|gb|EEO10793.1| hypothetical protein VCC_000775 [Vibrio cholerae RC9]
 gi|229353107|gb|EEO18046.1| hypothetical protein VCE_001033 [Vibrio cholerae B33]
 gi|229354947|gb|EEO19868.1| hypothetical protein VCF_002671 [Vibrio cholerae BX 330286]
 gi|229369603|gb|ACQ60026.1| hypothetical protein VCD_001857 [Vibrio cholerae MJ-1236]
 gi|254846750|gb|EET25164.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738046|gb|EET93439.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297534185|gb|EFH73023.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297540838|gb|EFH76895.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 366

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|90580731|ref|ZP_01236534.1| putative permease [Vibrio angustum S14]
 gi|90437999|gb|EAS63187.1| putative permease [Vibrio angustum S14]
          Length = 366

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 123/362 (33%), Gaps = 25/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + +  +   +  +   +++L   G  IP++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATDGSIPSDLILTFMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG  +  L++  L LA++      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGKKLLLQSALALAVITGAIAAVNSFWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVD--S 178
           P  +  I+QL  + +   T + L +  F    +    I I       + L  +F+    +
Sbjct: 122 PWSQEHIEQLKEETKAGPTLNMLVKGTFQPAPNGSGVIFIDNITDKGSKLHKVFVAQLKA 181

Query: 179 RDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            DT    +  A +G++      RQ + LNDG  +   P   + SI  F  Y         
Sbjct: 182 TDTLQPSVIVADNGTVKELSDGRQMLELNDGARYEGVPTQLNYSITHFNDYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                    Q    L+           +     ++E   R +  L      L+ ++    
Sbjct: 242 KAGNRDWEAQPTMALI----------KDQSLAAKAELQWRFSLVLC---IPLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE-----QNPYYIPILYLFLFCISSIF 350
            A+  ++ +   +  ++ I    F   S     IE           PI    L    ++ 
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAIEDGIIPSAIGMWPINITTLLVALALN 348

Query: 351 LL 352
             
Sbjct: 349 SW 350


>gi|209519258|ref|ZP_03268060.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
 gi|209500338|gb|EEA00392.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
          Length = 365

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 133/363 (36%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLARFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESPTTHRVFFIEKMSPDQGHVENVFVTST-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  +++G I+  +     ++L +G  +   P   D  IM+F+ Y ++ +S     
Sbjct: 181 GGKVNVVVSKNGHIETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    ++ L NP   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGLPTMTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    ++I          + IL++ +  I +    +  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQAWIEQGKMSFGVGLVILHVIVLGIVAFIFWLRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|260772182|ref|ZP_05881099.1| predicted permease [Vibrio metschnikovii CIP 69.14]
 gi|260613049|gb|EEX38251.1| predicted permease [Vibrio metschnikovii CIP 69.14]
          Length = 367

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 121/339 (35%), Gaps = 18/339 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S       ++L I    +P +  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPARMILSIVALNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LAI+ S     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAIITSSAAAFNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  LQ +F+     R 
Sbjct: 122 PWSQDKEAQLIEQLAAESSVDLLQKGQFQRSPDGSSVVFIDNIENRKLQNVFVAQLAPRQ 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG +      RQ I +++G  +   P   D  I +F  Y       +   
Sbjct: 182 SILPSVMFSDSGEVKELSDGRQMITMHNGVRYEGVPTRLDYMITRFDQYEGLIGQRSVKA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 +     L+     NP+ R +      +E   R++  L      L++++     A
Sbjct: 242 KGRDWQETPTLALIR----NPDSRAQ------AELQWRISLVLC---IPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           +  ++ +   +  ++ I    F   S +   +E     I
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLTISAMKSALEDGTIPI 327


>gi|78067267|ref|YP_370036.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
 gi|77968012|gb|ABB09392.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
          Length = 363

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 138/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K  P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +  +Q+G  +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKV-NVVVSQTGHTETRDGSRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSTPVTNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +      L NP  +N            +EF  R    L  +   ++ I        
Sbjct: 241 PTTNSTPTPDLLRNPTNDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ      +    L+L +  I +    + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQSQIEQGKMSFGVGLVGLHLVVAVIVAFIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|306816677|ref|ZP_07450809.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
 gi|305850242|gb|EFM50701.1| hypothetical protein ECNC101_08664 [Escherichia coli NC101]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L   +    
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|296315184|ref|ZP_06865125.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837908|gb|EFH21846.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 371

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 143/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD---DDLYIKISKYNPNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L      +Y   +    +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFNTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L+DG  +  +P   D + + F+  +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLHDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+                +R+E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLI----------GSSNPQHRAELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|281180021|dbj|BAI56351.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 356

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L   +    
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|261364965|ref|ZP_05977848.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
 gi|288566762|gb|EFC88322.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
          Length = 371

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 149/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTSQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|256420369|ref|YP_003121022.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
 gi|256035277|gb|ACU58821.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
          Length = 478

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 101/244 (41%), Gaps = 12/244 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +++     F+ +    +F+  +  + + I+ +        +++++  Y    +
Sbjct: 1   MKKLDKLLIKTFMGPFVATFFVTLFVLVMQFLWKYIDDLVGKGLDTPVIIELITYTSANL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +     ++  + EL+ + ++G S    ++P+L +  +++I  F+  N 
Sbjct: 61  VSLALPLAVLLSSIMTFGNLGESFELVALKSSGISLTRFMRPLLAVCTMIAILAFLFNNY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P      K L      +     ++  +F+    D  IK+++   +N T+  + I+D  
Sbjct: 121 AMPVANLRAKSLLYDITNSKPAFNIKAGVFYTDIPDYTIKVAEKEKDNKTIHQVMIIDHT 180

Query: 180 DTQTHKIYYAQSGS--IDLDRQAI--ILNDGEVH-----RKSPISKDISIMKFKSY--TL 228
                K+  A+ G+  +  D++ +  +L  G  +     R S    ++  + F+ Y    
Sbjct: 181 PGGGDKVILAEKGTMLLSADKRFLYFVLEKGWRYEERNNRSSTTPGELIRLGFREYKKAF 240

Query: 229 QTES 232
              S
Sbjct: 241 DLSS 244


>gi|206561015|ref|YP_002231780.1| putative permease [Burkholderia cenocepacia J2315]
 gi|198037057|emb|CAR52978.1| putative permease protein [Burkholderia cenocepacia J2315]
          Length = 364

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 139/366 (37%), Gaps = 24/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFAAPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +Q+G  +  +     ++L DG  +  +P   +  IM+F+ Y ++  S   + 
Sbjct: 182 GKV-NVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +      L NP  +N            +EF  R    L  +   ++ I       
Sbjct: 241 VQTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLM 353
             R+ + I+ + +++ I        + +  +IEQ      +    L++ +  I +    +
Sbjct: 288 NPRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVAFIFWL 346

Query: 354 IKKKYT 359
             +   
Sbjct: 347 RVRNRP 352


>gi|315179053|gb|ADT85967.1| hypothetical permease [Vibrio furnissii NCTC 11218]
          Length = 367

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 115/334 (34%), Gaps = 18/334 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    + ++ +   S       ++L I G  +P +  
Sbjct: 2   IIVRYLIRETLKSQLAIFFVLFLVFLSQKFIRVLADASDGEIPARLILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+L I+ S     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLGIITSCLAGFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  ++ +  +     +   L++  F R  D   +       N  L  +F+     R+
Sbjct: 122 PWSQDKVQSVMEQLAAENSVDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPRE 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ +G    +   RQ I + +G  +   P   D  + KF  Y           
Sbjct: 182 SILPSVMFSDAGDVKELSDGRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKE 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       L+               + ++E   R++     V   L++++     A
Sbjct: 242 KGRDWEAIPTLELV----------KNADRSAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           +  ++ +   +  ++ I    F   S     +E 
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLAISATKSALED 322


>gi|149280024|ref|ZP_01886149.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
 gi|149229221|gb|EDM34615.1| hypothetical protein PBAL39_24078 [Pedobacter sp. BAL39]
          Length = 472

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 13/263 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   + +L+   R F ++   ++FI  +  + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHVLLLKAFIRPFFVTFFIVMFILLMFFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L   +SI  F   + 
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGISLQKAMMPLLVLITCISISSFFFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + PK       L    +       ++E +F     +  I++ K   +  TL  + I D +
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNSSIPNYSIRVDKKGADGVTLHNVMIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPIS-------KDISIMKFKSYT-- 227
            +    KI  A+ G +  D + ++  L DG  + +S          ++++ M+FK     
Sbjct: 181 SNNGIAKIIIAKEGKMASDDKYLLLKLKDGVRYEESSGKNASYNPRQELTRMRFKETDQK 240

Query: 228 LQTESANSSTIVLKANDQNLSFL 250
               S N      +    N   L
Sbjct: 241 FDISSFNMKRTDEQGFRNNTQML 263


>gi|88803032|ref|ZP_01118559.1| putative permease [Polaribacter irgensii 23-P]
 gi|88781890|gb|EAR13068.1| putative permease [Polaribacter irgensii 23-P]
          Length = 482

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 94/250 (37%), Gaps = 16/250 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     FL + L ++F+  +  + Q    ++    S + +LK   Y   ++
Sbjct: 1   MKILDKYILKTFLGPFLATFLIVLFVLVMQLLWQTFENIAGKGISFSFILKFLYYTSLSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L S+  N E     ++G S   L++P++FL +LLS   F+  N 
Sbjct: 61  VPQAMPIAVLLSSIMALGSLGENYEFAAAKSSGISLQRLVRPLIFLTLLLSGINFLFLNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVD- 177
           I P      + L    +       L    F        IK  +      N L+ + I D 
Sbjct: 121 IFPYAILKQQNLYYNIKKKKPALALIPGSFNSDLPGYQIKFDEKYGEEKNLLKNVLIYDL 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKD---------ISIMKFK 224
           S      KI  A+ G I  +        IL DG  +     +            S   FK
Sbjct: 181 SSSKGNQKIITAKRGKIISEEGSRYMTFILYDGYYYEDHTKTTRSYSKKKNMPASQATFK 240

Query: 225 SYTLQTESAN 234
            Y    + ++
Sbjct: 241 EYEFNIDISD 250



 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
           N  +  ++ + L  + SE++ R+      +I   I    A   +++R+     P+ ++++
Sbjct: 352 NVTSIKWKRKTLNFFDSEYYGRIALSFSCLILFFIG---APLGSIIRKGGFGLPMILAIA 408

Query: 314 ISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKK 356
           I    F+G +   +   E +   +   ++    +    + + ++
Sbjct: 409 IYVTYFFGNTMGKNLAEESSISAVLGSWISAMVMIPFGIFLTRR 452


>gi|258645769|ref|ZP_05733238.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
 gi|260403140|gb|EEW96687.1| membrane protein, YjgP/YjgQ family [Dialister invisus DSM 15470]
          Length = 361

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 122/366 (33%), Gaps = 18/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      +L+  + V+    S    LKI    +P 
Sbjct: 1   MRILDKYILKEFLGPFLFGVAAFTAIFLGADTLLKIADYVTKYGASSTAALKIFILALPR 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +      + ++ ++EL+++  +G S   L+ P+  L  L+S+       
Sbjct: 61  IIVYTFPMAVLLGALMATSRLSGSSELIVMRTSGQSFSRLVMPIFILTFLISLCAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNN-TLQGIF 174
            + P      +Q+            + +++  R   +      +   +YNP N  L+ I 
Sbjct: 121 YVVPWTNRKYEQVINIEIKRNLNPGVTDHVILRDVQNGKIAHLLYARRYNPENKKLENIT 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM---KFKSYTLQTE 231
           I + ++    ++  A +      +    + +G ++         ++    +F  Y    E
Sbjct: 181 IQEFQNEAVIRVENAPNAVWKDGK--WFMENGTIYDLGEDGISRTMRFKNQFIPYGQSPE 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +           +  +  L            E       E H+R +      +F    +V
Sbjct: 239 TIQKEHKDYD--EMTIRELFTARKAYEA-AHEDATAIVMEIHRRFSLPFASFVF---GLV 292

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIF 350
            A       +        +S+ I F  +   +++           +  ++L         
Sbjct: 293 GAPLGVQRERSSSSIGFGLSVVIIFVYYAVMTFLEALGKGHVISAVAAVWLPNLIALICA 352

Query: 351 LLMIKK 356
           + +IK+
Sbjct: 353 VYLIKR 358


>gi|255066291|ref|ZP_05318146.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
 gi|255049501|gb|EET44965.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
          Length = 371

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 149/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFALLIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTSQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|117618567|ref|YP_858153.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559974|gb|ABK36922.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 368

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 118/346 (34%), Gaps = 18/346 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R   ++ L     ++ I    Q +Q I   +       ++  +    +P +  ++ 
Sbjct: 5   RYLFRETLKTQLAVLFVLLLIFVSQQFIQIIGDAADGEVPTRLVSTLLLLNLPNMALLML 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++   G S   +++  + LA+L +     +   + P+ 
Sbjct: 65  PISLFLAILFAHGRLYAESEMTVMHAVGFSHRFVMRSAMVLALLTAAVAAFNTGWVAPQA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDS-RDTQ 182
           +    Q+  + +     S+L+   F  LD   L   I   N   + LQ IF++   +D +
Sbjct: 125 KEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQDLNDKGSKLQKIFVLQRSQDGK 184

Query: 183 THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              +  A  G + +D      + L DG  +     ++   I +F  Y+L           
Sbjct: 185 PPSVVVATEGVVTVDSNGLQWLTLKDGSRYEGHFNTRQFQISEFDEYSLVIRQQEMERSN 244

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            KA  +    LL    N             +E   RL+  L  ++   + +  A  R   
Sbjct: 245 RKAAAKPTMELLGTQDNQLM----------AELQWRLSLPLSILVLTFLVVPLA--RVNP 292

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           RQ +    +   L          +           + P ++L    
Sbjct: 293 RQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLV 338


>gi|262170557|ref|ZP_06038235.1| predicted permease [Vibrio mimicus MB-451]
 gi|261891633|gb|EEY37619.1| predicted permease [Vibrio mimicus MB-451]
          Length = 366

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 124/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +   ++   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPVNAALLIAALVVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|332754457|gb|EGJ84823.1| hypothetical protein SF274771_3587 [Shigella flexneri 2747-71]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 139/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A  GS+D+               SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRA--GSVDVVDP------------SPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      +                IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGCDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLILVARDFS 349


>gi|319776036|ref|YP_004138524.1| permease [Haemophilus influenzae F3047]
 gi|329123194|ref|ZP_08251763.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
 gi|317450627|emb|CBY86847.1| Predicted permease [Haemophilus influenzae F3047]
 gi|327471539|gb|EGF16983.1| inner membrane protein YjgP [Haemophilus aegyptius ATCC 11116]
          Length = 367

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 125/356 (35%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +P +  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPIMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALIMSLLTAGIAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P        +   A+   T   L    F   +++  +       +N ++ +++     + 
Sbjct: 122 PWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNVVLFIDKIKDNQIRNVYLFQMTPQK 181

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    +    D  I  F  Y       ++  
Sbjct: 182 QTKPSVITAEKGELIALPSGDQVLNLKNTKRVEGTSALPDFRITHFDEYHAYLGYQSAEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +  LS L++ + ++           ++E H R+T  L   +  LI++     R 
Sbjct: 242 TNDEVAELTLSQLIDLDSSSA----------KAELHWRITLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKLEAELLMPLVNIGFFLLAVVL 345


>gi|191172497|ref|ZP_03034037.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300993119|ref|ZP_07180205.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|190907165|gb|EDV66764.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|300305134|gb|EFJ59654.1| hypothetical protein HMPREF9553_04259 [Escherichia coli MS 200-1]
 gi|324011925|gb|EGB81144.1| hypothetical protein HMPREF9533_04083 [Escherichia coli MS 60-1]
          Length = 356

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L   +    
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 LKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|170697653|ref|ZP_02888741.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
 gi|170137401|gb|EDT05641.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
          Length = 363

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 138/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K  P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMAPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  + +G  +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKV-NIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +      L NP  +N            +EF  R    L  +   ++ I        
Sbjct: 241 PTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ      +    L++ +  I ++   + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVIVAAIVALIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|253991457|ref|YP_003042813.1| inner membrane protein yjgp [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782907|emb|CAQ86072.1| inner membrane protein yjgp [Photorhabdus asymbiotica]
          Length = 366

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 143/365 (39%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N+++ + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVEGNVPANLVISLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+   L LA+L S    ++   + 
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWMM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+ A A+   + + + E  F   +D  L + I   + +   + +F+   R  
Sbjct: 122 PWSSKYQEQVLADARANPSLAAIMEGKFKPSNDGNLVLYIGSVHGD-KFKNVFLAQLRPV 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D Q   +  +  G +      +Q +ILN G  +  + + +D  I +F  Y        S 
Sbjct: 181 DNQRPSVVISDGGHMVERPDGKQVVILNHGTRYEGTAMLRDFRITEFNDYQAVVGHQASV 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   ++++ L   N  +           R+EFH RLT  L  +I  ++ +      
Sbjct: 241 VDGDKVEQKSIAQLWRDNDKDS----------RAEFHWRLTLVLSVLIMAMMVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++++    + + L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGGKGKLDPLIWMWTVNGAYLMLAL 343

Query: 354 IKKKY 358
           +   +
Sbjct: 344 VLNIW 348


>gi|241760314|ref|ZP_04758409.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|319637672|ref|ZP_07992438.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
 gi|241319192|gb|EER55670.1| permease, YjgP/YjgQ family [Neisseria flavescens SK114]
 gi|317400827|gb|EFV81482.1| hypothetical protein HMPREF0604_00061 [Neisseria mucosa C102]
          Length = 371

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S+  +++ + L DG  +  +P   D + + F+  +L    +    
Sbjct: 182 KNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|331659262|ref|ZP_08360204.1| putative permease [Escherichia coli TA206]
 gi|315297643|gb|EFU56920.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053844|gb|EGI25873.1| putative permease [Escherichia coli TA206]
          Length = 356

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 141/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L   +    
Sbjct: 180 TANRTRIFRARSVDVVDLSPEKPTVMLHNGTAYLLDHQGRDDNEQIYRNLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SANVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|78186598|ref|YP_374641.1| hypothetical protein Plut_0723 [Chlorobium luteolum DSM 273]
 gi|78166500|gb|ABB23598.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 442

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 96/240 (40%), Gaps = 6/240 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+ +   F ++ L I+F+  +       +           L+++       +
Sbjct: 1   MKIIDRYILKSLVGPFFLAFLTIMFVLILQFFANFADRFIGRGIDFMSLIELLALQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+   +E+ +   +G S   L+ PV+ +  LLS+ +    N+
Sbjct: 61  VGLAAPMAVLIGVVMAFGSLTTTSEMTVFRASGLSLYRLMLPVVIVGFLLSLLVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           ++P+ +   + L +    A     + EN F  L D   I +   +    ++  I I D+ 
Sbjct: 121 VQPQVKYKARSLMSDIAKAKPTFGITENAFSPLVDGYSILVQHADEKTGSIGDIIIYDAT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKS-PISKDISIMKFKSYTLQTESAN 234
                 +  A+ G ID         ++L+DG++H    P  +    M+F  +    ES  
Sbjct: 181 RKDYRSVITAKDGVIDFSADGRYLVMMLSDGQIHEVQVPGHRLYRKMEFDRHRFVFESTG 240



 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
           L   Y +E+HK+        +F LI    A    L R+        +SL + F ++W   
Sbjct: 342 LYNRYMAEYHKKYALAFACFVFVLIG---APLGVLARRGGFGIGAVLSL-LFFVLYWVLM 397

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFL 351
                + +     P + +++  +    +
Sbjct: 398 ITGENMAEWGVLPPAVAIWMADVVIAVI 425


>gi|261377636|ref|ZP_05982209.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146390|gb|EEZ72808.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 371

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 149/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSMVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L    +    
Sbjct: 182 KNGKDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGKADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTSQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I +++ +      G +++ + +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILVAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFAIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|309378516|emb|CBX22869.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 371

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/365 (13%), Positives = 148/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++A+ L DG  +  +P   D + + F+  +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNNNKRALELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|261401002|ref|ZP_05987127.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|269209119|gb|EEZ75574.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
          Length = 371

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 147/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGRFNTLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L DG  +  +P   D + + F+  +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLELRDGYRYSGTPGKADYNRVSFRHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRGGHTYNILIAIGLFLIYQNGLTLLFEAVENGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|229513427|ref|ZP_04402891.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
 gi|229349304|gb|EEO14260.1| hypothetical protein VCB_001072 [Vibrio cholerae TMA 21]
          Length = 366

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMDQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|262166531|ref|ZP_06034268.1| predicted permease [Vibrio mimicus VM223]
 gi|262026247|gb|EEY44915.1| predicted permease [Vibrio mimicus VM223]
          Length = 366

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 124/364 (34%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASIAAFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +    QL  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAQLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLHNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSNSGDVKELSDGRQIITLYNGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LL                 ++E   RL+     V   L++++     A
Sbjct: 242 SGRDWEALPTLSLL----------KNSDLQAQAELQWRLS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ +   +  ++ I    F   S       ++     I+ L+    + +   ++   
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIVGLWPVNAALLIAALVVNT 347

Query: 358 YTKI 361
              I
Sbjct: 348 MDSI 351


>gi|238921310|ref|YP_002934825.1| hypothetical protein NT01EI_3454 [Edwardsiella ictaluri 93-146]
 gi|238870879|gb|ACR70590.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 366

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 134/348 (38%), Gaps = 25/348 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +  V +     N++  + G  IP +  
Sbjct: 2   IIIRYLVRETVKSQVAILFILLLIFFCQKMVRILGAVVNGDIPTNLVFSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA +      ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLAFITGALALVNAFWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-- 180
           P       ++ A+A+     + L E  F    D  Y+       +   Q +F+   R   
Sbjct: 122 PWSSLHSDEVMAEARANPGLASLAEGQFQSSQDGNYVLFVGNVKDKKFQNVFLAQLRPSG 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +Q   +  A SG +       Q ++L+ G  +  + + +D  I  F  Y+      ++  
Sbjct: 182 SQRPSVVVADSGHLVEMKDGAQKVVLDSGTRYEGTAMLRDFRITDFVDYSAIIGHKSAML 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L +    +          +R+EFH RLT     ++  L+ +       
Sbjct: 242 DPNNADQASMEALWHSQEPS----------FRAEFHWRLTLVFSVIVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLF 342
             RQ +      +S+  +  ++  F  +   +  N       P+++++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGGKDKLDPMIWMW 332


>gi|148546262|ref|YP_001266364.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
 gi|148510320|gb|ABQ77180.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
          Length = 383

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 23/318 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L ++ 
Sbjct: 17  RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQLIL 76

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P  
Sbjct: 77  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLAPLG 136

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++Q+ ++      F  L    F  L D        + + +   L G+FI + R    
Sbjct: 137 VAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKRFNQD 196

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   I  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 197 KTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPE 256

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +      S L+           +     R+E   RL+  +   +  L+++    
Sbjct: 257 VAEEVTEREALPTSELI----------GKEGLRERAELQWRLSLPILVFVVTLLAVP--L 304

Query: 295 KRALVRQRKKIHPIFISL 312
            R   RQ + +  +   L
Sbjct: 305 SRVNPRQGRFLKLLPAIL 322


>gi|217077925|ref|YP_002335643.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
 gi|217037780|gb|ACJ76302.1| putative permease, YjgP/YjgQ family [Thermosipho africanus TCF52B]
          Length = 1110

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 124/354 (35%), Gaps = 5/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+     FLM     +  A V  + Q  +++      +  L ++  Y +P  
Sbjct: 1   MKVLTKYILKLSLGPFLMGIGAFIVFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P         VL+ +  + E+      G     L+ P L L+I+     F   + 
Sbjct: 61  ASLGIPVGILFSIFWVLSQLYSSKEITAFLVHGIPSRKLVYPFLILSIIFGAVSFYLNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK      +  +K         ++EN+  ++D+  Y  + +Y+     L  + +  + 
Sbjct: 121 IVPKFNQKAMETISKYVYKKPEVTIKENVLTKIDESQYFFVKRYDQQQGILYDVVLFQNM 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            ++   I  A+   ++ +  +  L +G+++           + F    L  +    S + 
Sbjct: 181 QSEER-IITAKK--VEKEENSWYLINGKMYVTDRDGFMKLDLSFSKIKLDLKDDLESLMR 237

Query: 240 LKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +  + ++++   L                +  E H R    + P I  ++ +  +    L
Sbjct: 238 VGKSPRDMTGEELIQKIKTFKKLGVDPSPWIVELHGRYANSVGPFIIVILGVPLSLLFGL 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             +   +   F+ + +  G     S +  +   NP         LF I    L 
Sbjct: 298 KSKSWSVIFTFVIVVLYQGSGAWLSAMGKENLINPVLAAWYPDLLFAIVGFILF 351


>gi|153801086|ref|ZP_01955672.1| membrane protein, putative [Vibrio cholerae MZO-3]
 gi|124123319|gb|EAY42062.1| membrane protein, putative [Vibrio cholerae MZO-3]
          Length = 354

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|237811281|ref|YP_002895732.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|254181440|ref|ZP_04888037.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|184211978|gb|EDU09021.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|237503123|gb|ACQ95441.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
          Length = 365

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 135/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQ 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|15602061|ref|NP_245133.1| hypothetical protein PM0196 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720419|gb|AAK02280.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 368

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 114/306 (37%), Gaps = 17/306 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S L     ++ I +  Q+++ +   +S     ++++ + G  +PT+  
Sbjct: 2   ILTRYLTKEVLKSQLAILFILLLIFFCQQLVRVLGSAASGKVPADLVMSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ VL L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQKILVRVVLILSLFTASIAAYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   T   L    F   +++ ++       +NT+  +++  +R+  
Sbjct: 122 PWAIQKQSEILEGAKANPTMGALASGQFINTNNNEFVLFIDSIKDNTIHDVYVFQTRERG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    S    D  I  F+ Y       + + 
Sbjct: 182 NLKPSVLVAEKGELQALPNGDQILKLENSQRVEGSSAFPDFRITHFEEYQAYLGYQDKNN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  +     L+                 ++E + RL+  L   +  LI++     R 
Sbjct: 242 DEQETEELGFWDLM----------KTHTPAAKAELNWRLSLILAVPLMALIAVP--LSRV 289

Query: 298 LVRQRK 303
             RQ +
Sbjct: 290 NPRQGR 295


>gi|78356991|ref|YP_388440.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219396|gb|ABB38745.1| permease, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 397

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 131/368 (35%), Gaps = 17/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   +  + + +   F +    ++ +  + ++LQ   L      +   +  +  YL P  
Sbjct: 10  ITLLQKQLFKELVSLFGLCLGSLLSLILIGRMLQLRELFLGLDLNALDMATLFVYLSPLF 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +        M+ + EL+ +   G S   L+   L   +L  +        
Sbjct: 70  LTLIIPIACMLSVFLAFLRMSTDRELVALKAGGLSLFQLLPAPLLFCLLCGLLNLYISLS 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
                    +    +         L+  +F +    L +     +  +  L  + + D+ 
Sbjct: 130 GVAWGMGNFRHTIMEIANTRAKIVLQPGVFNQTVPGLTVFARTVDNSSGKLGHVLVEDNS 189

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +T  +  A  G +  D Q      IL++G+++R+      +S++ F  YT++ +    
Sbjct: 190 RDETSILILAPRGQLRSDEQRGELVFILHNGKIYRQQED--SVSVLDFNDYTVRLDLGQI 247

Query: 236 ----STIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKRLTQWLFPVIFGLIS 289
               S   +K  + + S L +  P++P  R     L     E  KR   W+ P+   ++ 
Sbjct: 248 FKGVSLGKVKPKELSWSELRSIGPDHPEARRDSNFLRKVHVELQKR---WVLPMACLVLG 304

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISS 348
           + A       +   K   I ++L +    +   S  +   E       + L++      +
Sbjct: 305 LFAMPLACAFQGLDKQFGILLALGMFLIYYTMLSVGLSTGESGTVPPAVGLWMPNLIFLA 364

Query: 349 IFLLMIKK 356
           + L  + +
Sbjct: 365 VGLFWLDR 372


>gi|283833700|ref|ZP_06353441.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
 gi|291071386|gb|EFE09495.1| permease YjgP/YjgQ [Citrobacter youngae ATCC 29220]
          Length = 356

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 138/361 (38%), Gaps = 19/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E YI+  + R   +   F++FI  +    + +   ++ T +L  +L I  Y +   
Sbjct: 1   MRLIERYIMFEVSRLVAIIVGFLIFIFAIYSAQRYLTDAANGTLALTAVLAIVFYKVIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  ++  +E+  +   G+S + L K V++ AI L I + +    
Sbjct: 61  LEMLLPVGLYVSVGIALGQLHAESEITALLAAGSSPLRLYKTVMYFAIPLGILVTLLSMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P     I +L  ++Q  L  S+L    F   D    I  +  +P+   L  + I    
Sbjct: 121 GRPWAYMQIYRLEQQSQSELDISHLRARKFNVNDHGHMILAATISPDTGHLTDMLIYTPS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ---AIILNDGEVHRKSPISKDISIMK-FKSYTLQTESANS 235
           +  T  ++ A  G I        ++ L+ G  +R    +      + F+   +Q +    
Sbjct: 181 E-NTSSLFRAHCGDITNPSPLTPSVALHSGTSYRLDHHNGQGDNGQIFQRLNIQLKPLMQ 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  +      +   + +P +            +E   R+++ +  ++  L+++     
Sbjct: 240 NPITRRKASSMTALRTSTDPGDT-----------AELQWRISRGINALLMALLAVSV--S 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R   RQ +    I +SL  +   + G              IP ++L    +     ++I 
Sbjct: 287 RVKPRQGRFSTLIPLSLLFTCIFYGGNVCRTLVANGALPVIPGVWLVQILMLFGVGMLIV 346

Query: 356 K 356
           +
Sbjct: 347 R 347


>gi|261379717|ref|ZP_05984290.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797387|gb|EFC52734.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 371

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S+  +++ + L DG  +  +P   D + + F+  +L    +    
Sbjct: 182 KNGNDNIVFAKEGNFSLTDNKRTLELRDGYRYSGTPGKADYNRVSFQHLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLVYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|320195130|gb|EFW69759.1| Permease Ygh-P1, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 356

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 142/363 (39%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P         +L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVMLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +I+ A+S  +     ++  ++L++G  +      +D +   +++  L   +    
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLEHQGRDDNEQIYRNLQLHL-NPLDQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +  +K   ++++ L             +     +E   R ++ L      +  +  +  R
Sbjct: 239 SPNVKRKAKSVTEL----------ARSVFPADHAELQWRQSRGLT--ALLMALLAISLSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L      + G              IP L+L    +    L+++ +
Sbjct: 287 VKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|301048205|ref|ZP_07195241.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299963|gb|EFJ56348.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 128/354 (36%), Gaps = 32/354 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++F        + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFFFARYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P          L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYASVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  +  R   RQ +    + ++L      + G              IP L+L  
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFVAIFYGGDVCRTLVANGAIPLIPGLWLVP 333


>gi|257126591|ref|YP_003164705.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
 gi|257050530|gb|ACV39714.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
          Length = 365

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 132/366 (36%), Gaps = 12/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  +++ +  + +S      ++    Y +P V
Sbjct: 1   MKIIDKYIYNSLILPSVFGISIFTFIMMLNVVMEVMERLFASDLPFISIIDYLFYAMPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G     +I+P     ++L++     E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGVGLFRIIRPAFIFGVILTLIGLGLELY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNN-TLQGIFIVDS 178
           + P+    I   + +   +   S  EE +F    +      I + + +  T +   I++ 
Sbjct: 121 VNPRALKNINAQTKQILASRPSSLTEEKVFLSNEEKGFGFYIDEVSNDKATAKNFLIINK 180

Query: 179 R-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           R D     ++ A+    D     +    G    K+  S+  +  + +   + T       
Sbjct: 181 RGDNPYPIVFLAEDAKFDPGIIRLKKVKGYAFDKTGSSQVSAEYQEQEIPISTFFREKKQ 240

Query: 238 IVLKAN-DQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + K+  + NL  L      N  NP  + E     + E ++R+   L       +  +  
Sbjct: 241 ELKKSRKEMNLKELEKFYKANIKNPEEK-EAALKAQVEIYQRIIGPLAS---TFLCWLGV 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLL 352
                 R+  +     ISL + FG     SY  I  ++ +      +++  F +  + + 
Sbjct: 297 LLSVGHRRSGRGISFGISLIVIFGYIGMASYAKIMVLKNDVPASIAMWVPNFVLFILCIF 356

Query: 353 MIKKKY 358
              KKY
Sbjct: 357 FSIKKY 362


>gi|167718522|ref|ZP_02401758.1| hypothetical protein BpseD_05837 [Burkholderia pseudomallei DM98]
          Length = 365

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 135/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|254225899|ref|ZP_04919501.1| membrane protein, putative [Vibrio cholerae V51]
 gi|125621525|gb|EAZ49857.1| membrane protein, putative [Vibrio cholerae V51]
          Length = 334

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|118581150|ref|YP_902400.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118503860|gb|ABL00343.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 367

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 137/360 (38%), Gaps = 22/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E YI+R I    ++ C  ++ I      ++ +N   +   S   ++ +    +   L 
Sbjct: 2   IIERYIVREICAPLVVICTVLIMIFSGFSAVRFLNDAVNGLLSGGTVVALVSLKVLIALE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L+ +  + E+  ++  G S+  LI  VLFLAILL++ +        
Sbjct: 62  VLIPVTLYLAIVLALSRLYADGEITAMEAGGLSQKKLISAVLFLAILLALMVTGLSLHAR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
           P     +  L  + Q     + +E   F+ L  +L     K +P  N  + +++ +    
Sbjct: 122 PWAYGKMYLLETRGQNEFDIAKVEAGRFYELSHNLVFFAEKLDPARNQARNVWVWEF-GP 180

Query: 182 QTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +  ++  A+S          ++AI+  +G  +  +  +    ++ F+   LQ E      
Sbjct: 181 EKRRVTSARSAFQTNGPGEGQKAIVFQEGSHYSLNLKTGTDHLVGFQENVLQLEPPQIPP 240

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +    +   L  + +P +            +E   R +  +  V+  L++I      
Sbjct: 241 AKYRRKAASTEHLATSTDPAD-----------IAELQWRFSTGISTVLMALLAI---PLS 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE-QNPYYIPILYLFLFCISSIFLLMIK 355
            +  +R K   +  ++ + F ++         +E Q    +P ++      + + L ++ 
Sbjct: 287 RVAPRRGKYGKVVAAIILFFVIYNLSLIAKTWVEKQVVGAVPGIWWVTLLNAGLVLFLLP 346


>gi|332998925|gb|EGK18516.1| hypothetical protein SFVA6_3890 [Shigella flexneri VA-6]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R    Q +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPWQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLILVARDFS 349


>gi|225075102|ref|ZP_03718301.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
 gi|224953586|gb|EEG34795.1| hypothetical protein NEIFLAOT_00101 [Neisseria flavescens
           NRL30031/H210]
          Length = 373

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 148/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNFIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L +G  +  +P   D + + F++ +L    +    
Sbjct: 182 KNGNDNIIFAKEGNFSLNDNKRTLDLRNGYRYSGTPGRADYNRVSFQNLSLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        S L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTSQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G +++ + +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTFLRNAVEDGKIHFWLGLLPMHIIMFVIAVVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|53718606|ref|YP_107592.1| putative permease [Burkholderia pseudomallei K96243]
 gi|53725611|ref|YP_102446.1| permease [Burkholderia mallei ATCC 23344]
 gi|67640815|ref|ZP_00439609.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|76811087|ref|YP_332585.1| permease [Burkholderia pseudomallei 1710b]
 gi|121601060|ref|YP_993649.1| hypothetical protein BMASAVP1_A2340 [Burkholderia mallei SAVP1]
 gi|124383987|ref|YP_001028889.1| hypothetical protein BMA10229_A2945 [Burkholderia mallei NCTC
           10229]
 gi|126450363|ref|YP_001081198.1| hypothetical protein BMA10247_1654 [Burkholderia mallei NCTC 10247]
 gi|126453581|ref|YP_001065301.1| hypothetical protein BURPS1106A_1021 [Burkholderia pseudomallei
           1106a]
 gi|134281291|ref|ZP_01768000.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167003639|ref|ZP_02269425.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167737554|ref|ZP_02410328.1| hypothetical protein Bpse14_05785 [Burkholderia pseudomallei 14]
 gi|167814688|ref|ZP_02446368.1| hypothetical protein Bpse9_06062 [Burkholderia pseudomallei 91]
 gi|167823142|ref|ZP_02454613.1| hypothetical protein Bpseu9_05663 [Burkholderia pseudomallei 9]
 gi|167844706|ref|ZP_02470214.1| hypothetical protein BpseB_05398 [Burkholderia pseudomallei B7210]
 gi|167893241|ref|ZP_02480643.1| hypothetical protein Bpse7_05715 [Burkholderia pseudomallei 7894]
 gi|167901698|ref|ZP_02488903.1| hypothetical protein BpseN_05425 [Burkholderia pseudomallei NCTC
           13177]
 gi|167909937|ref|ZP_02497028.1| hypothetical protein Bpse112_05556 [Burkholderia pseudomallei 112]
 gi|167917974|ref|ZP_02505065.1| hypothetical protein BpseBC_05423 [Burkholderia pseudomallei
           BCC215]
 gi|217419643|ref|ZP_03451149.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226194506|ref|ZP_03790104.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|242317338|ref|ZP_04816354.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177868|ref|ZP_04884523.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254190839|ref|ZP_04897346.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196871|ref|ZP_04903295.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254199348|ref|ZP_04905714.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254205664|ref|ZP_04912016.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254258333|ref|ZP_04949387.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254357822|ref|ZP_04974095.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52209020|emb|CAH34960.1| putative permease protein [Burkholderia pseudomallei K96243]
 gi|52429034|gb|AAU49627.1| permease, putative [Burkholderia mallei ATCC 23344]
 gi|76580540|gb|ABA50015.1| permease, putative [Burkholderia pseudomallei 1710b]
 gi|121229870|gb|ABM52388.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124292007|gb|ABN01276.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126227223|gb|ABN90763.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126243233|gb|ABO06326.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134247597|gb|EBA47682.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147748944|gb|EDK56018.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147753107|gb|EDK60172.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148026949|gb|EDK84970.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|157938514|gb|EDO94184.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698907|gb|EDP88877.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169653614|gb|EDS86307.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|217396947|gb|EEC36963.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225933591|gb|EEH29580.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|238521610|gb|EEP85060.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|242140577|gb|EES26979.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243060865|gb|EES43051.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254217022|gb|EET06406.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 365

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 135/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|325527102|gb|EGD04517.1| YjgP/YjgQ like transporter [Burkholderia sp. TJI49]
          Length = 363

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 138/365 (37%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K  P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESATNHRVFFIEKMTPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +  +Q+G  +     + ++L +G  +  +P   +  IM+F+ Y ++  S     +
Sbjct: 182 GKV-NVVVSQTGHTETRDGDRFVVLENGRRYDGTPGQPNFKIMEFQRYGVKITSTPVVNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +   L  L NP  +N            +EF  R    L  +   ++ I  A     
Sbjct: 241 PTTNSTPTLDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIPLA--YQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ      +    L+L +  I      + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLLGLHLIVAAIVGFIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|148977744|ref|ZP_01814300.1| putative permease [Vibrionales bacterium SWAT-3]
 gi|145962958|gb|EDK28228.1| putative permease [Vibrionales bacterium SWAT-3]
          Length = 360

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 126/352 (35%), Gaps = 25/352 (7%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R   +S       +  +    + +  +   S      +++L I    +P +  ++ P 
Sbjct: 1   MIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGAIPASLILSIVSLNMPAMGLLMLPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +   +E+++++ TG     LI+  L+LA++ +     +   + P  + 
Sbjct: 61  SIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITASVAAFNSFWLSPWSQD 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDS--RDTQTH 184
            ++Q+  +     +   L +  F    D    + I   +  N L+ +F+     RD+   
Sbjct: 121 KVEQMYEEVAAENSVDLLPKGKFEGTPDGSSVVFIDDID-GNKLENVFVAQMRPRDSVLP 179

Query: 185 KIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            + Y++SG    +   RQ I++ DG  H   P   D  +  F+ Y           +  K
Sbjct: 180 SVMYSKSGDVKELSDGRQVIVMYDGTRHEGVPTRLDYMVTHFEEYE---GLIGQREVEKK 236

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
             D              +       + ++E   R++  +  +   L++++     A+  +
Sbjct: 237 GRD-------WEAIPTLDLVGNPNNSAKAELQWRISL-VLCI--PLLTMLVVPLSAVNPR 286

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISS 348
           + +   I  ++ I    F   S     IE+          PI  L L     
Sbjct: 287 QGRFAKIGPAILIYLTYFLAISATKSAIEEGSIPAVVGMWPINALLLIVAIG 338


>gi|115379870|ref|ZP_01466933.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115363129|gb|EAU62301.1| permease YjgP/YjgQ, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 342

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 124/338 (36%), Gaps = 11/338 (3%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           +Q L    ++  S  +L  + ++  YL P  L    P  F M     L  ++ + EL  +
Sbjct: 1   MQFLLGTEVLLGSAVTLTDIGRLILYLTPHFLVKALPIAFLMAILLGLGRLSEDRELTAL 60

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G S + L+   + + +LL+  + +     +P   +++K+L  +         ++  +
Sbjct: 61  QALGISPVQLLLGPMAIGLLLAGLMALLAFTAQPWGLTSVKELVNEVIKKNVAGDVKSGV 120

Query: 150 FFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGSID----LDRQAIILN 204
           F+    DL +   + +        + + D R+  +  +  AQ G +      +   ++L 
Sbjct: 121 FYEDLSDLTLYAERVSREGGEWTHVLLHDDREPSSPLLVLAQRGRVSMREGDEALRLVLE 180

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTE-----SANSSTIVLKANDQNLSFLLNPNPNNPN 259
           +GEVHR +  + D S+++F+   +        +  S+    +  + +   L+        
Sbjct: 181 EGEVHRATRSTADYSLLRFEQGEISVGLGGSMNRKSNRFRSQKEEMSPGELIQAAEEAEK 240

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                   +    H RL   + P+ F L+    A  R    +            + + + 
Sbjct: 241 S-GGNPRPFLMAIHMRLGNAVAPLSFALLGTPLAIGRKQAGRAWGYLLTLSGYVLFYVLS 299

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             F  + ++ +        L   LF +  +  +    +
Sbjct: 300 RVFETLGNQEKLPMVLAAQLPNILFSVLGVVAMWRVSR 337


>gi|309794091|ref|ZP_07688516.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308122498|gb|EFO59760.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 356

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 137/370 (37%), Gaps = 32/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+      +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLLVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I+ A+S  +                 SP    + +    +Y L  +  + +  +
Sbjct: 180 TANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNEQI 225

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLIS 289
                +NL   LNP   +PN + +                +E   R ++ L      +  
Sbjct: 226 Y----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLT--ALLMAL 279

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +  +  R   RQ +    + ++L      + G              IP L+L    +   
Sbjct: 280 LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMG 339

Query: 350 FLLMIKKKYT 359
            L+++ + ++
Sbjct: 340 LLMLVARDFS 349


>gi|313674336|ref|YP_004052332.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941034|gb|ADR20224.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 549

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 6/222 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  ILR     FL++   +VFI     +L+  +         ++  ++  Y    +
Sbjct: 1   MKKIDKLILRSFIGPFLITFFVVVFILLTQYMLKYFDDFVGKDLGFSVFAELIAYFSINM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            P+  P    + +     ++  + EL  I + G S + +++P+    + LS  ++ S N 
Sbjct: 61  TPIAFPLAVLLSSLMTFGNLGEHFELTAIKSAGISLVRVLRPLFVFVVCLSAVVYYSNNF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSR 179
           I PK       L    +       ++E  F+       IK +K  + + +L  + I +  
Sbjct: 121 IVPKANLEAYSLLYDIKQKKPSIDIKEGAFYGGIPGYSIKANKKYDDDKSLGDLIIYNHS 180

Query: 180 D-TQTHKIYYAQSGSI--DLDRQAIILN--DGEVHRKSPISK 216
           D     +I  A S  +   L  + +++   DG+ + +   +K
Sbjct: 181 DRKGNTEIILADSALMYTILGDKYLVMELFDGKSYTEEEANK 222


>gi|30248805|ref|NP_840875.1| hypothetical protein NE0801 [Nitrosomonas europaea ATCC 19718]
 gi|30180400|emb|CAD84712.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 358

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 140/362 (38%), Gaps = 24/362 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R +   F++  + ++ +     + + +    + T     + K+ G      
Sbjct: 1   MKIIERYITRELLFPFIVVTVILIGLFVSFSVARFLTSAVTETLGTAAMFKLVGLKTIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +     L+ MNR+ E+ ++   G     +I+ V  +A+ ++I   I    
Sbjct: 61  LEVLVPIAFYVAVIYGLSRMNRDQEINVLRTAGYGDNRIIRTVFVIALPIAILSGILSVY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNP-NNTLQGIFIVDS 178
             P   +    + A+A+  L  +  +   F+        I I   +     ++G+F    
Sbjct: 121 ARPWAYAESYIMDAQAEAELNTNRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGVF-HYI 179

Query: 179 RDTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R T+  +I  ++ G            I L +G+++R S  +   S ++F+      E+  
Sbjct: 180 RTTEDREIIISREGYQQPMTAEQWPHIELREGQIYRLSFDTVKDSAIRFEKMIYFNENDQ 239

Query: 235 SSTIVLK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +     K A+ ++L     P                +E   RL++ +  V+  LI++   
Sbjct: 240 AQNYRRKAASTRSLWDSEEPRE-------------IAELQWRLSRPVATVLLALIAVSF- 285

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                  ++ K    F+  ++ F V++  S +     +      +  ++      I ++M
Sbjct: 286 --TRTAPRKDKTDRTFLVAALVFAVYYNLSGLAKTWVEQGVVAAMPGVWWVYGLLIIIVM 343

Query: 354 IK 355
           ++
Sbjct: 344 LR 345


>gi|251792100|ref|YP_003006820.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Aggregatibacter aphrophilus NJ8700]
 gi|247533487|gb|ACS96733.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter aphrophilus NJ8700]
          Length = 367

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 125/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGQVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTLGRLYAESEITVMRACGIGQRILVKIVLILSLFTAAVAAYNALWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       ++  +A+       L    F   ++ D  + I     +N +  +++  ++  
Sbjct: 122 PWAIHKQTEIVEEAKANPNMGALSAGQFMTANNSDFVLFIDNI-QDNQINNVYVFQTQPK 180

Query: 182 Q--THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+ G +       Q + L + +    + I  D  I  F  Y         +
Sbjct: 181 GQSKPSVIVAEKGELKALPNGDQILNLQNSDRFEGTAILPDFRITHFDEYQAYLGHKTVA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +A + ++  L N N              ++EFH RLT  L   I  L+++     R
Sbjct: 241 DDADEAGEMDIMQLWNANAP----------AMKTEFHWRLTLILAVPIMALLAVP--LSR 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              RQ +    +   L          S               + L      ++ + +
Sbjct: 289 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDASLFMPLVNIAFFALAIFL 345


>gi|330720484|gb|EGG98783.1| putative permease [gamma proteobacterium IMCC2047]
          Length = 343

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 128/343 (37%), Gaps = 24/343 (6%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           +    ++++ I+ V+S   + + L  +  + +P +L MV P    +    V   M    E
Sbjct: 1   MVLTSRLVRYISEVASGDIAADFLFYLIVFRLPDILLMVLPISLLLAILLVFGRMYIENE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +   +G S   L    +    L+S+ +      + P     + +L  +      F  +
Sbjct: 61  MAVFSASGVSLKKLAVYAMASVSLVSLTVAALSFSLAPWGLKKVDELFVENANRTVFETV 120

Query: 146 EENLFFR-LDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKI-YYAQSGSIDLDRQA-- 200
               F    +D++ +   + + +   +  +FI    + +       A+ G +++   +  
Sbjct: 121 RAGRFSPMGEDNMSLYAERLSDDQRVMSDVFIAREANGKKSNFQIMAEQGYLEVKPNSLA 180

Query: 201 --IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
             +IL +G  +   P S+D  + +F+++ ++  S                 LL  + +  
Sbjct: 181 KYLILKNGYRYEGDPGSRDYKVTQFETFGIKLSSPPEQVKENSTRGMATGELLKLDSSTA 240

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +E   R++  L      +I+++      +  ++ + + +  ++   F  
Sbjct: 241 ----------IAELQWRISLPLL---VPIIALLGVPLSRVNPRQGRFYFLIPAMLFYFAY 287

Query: 319 FWGFSYIIHKIEQNP-YYIPILY---LFLFCISSIFLLMIKKK 357
               S +   +E+N       L+   +   C++ +  L + KK
Sbjct: 288 LVLLSGMKTAVEENTISPWLGLWWVHVMFLCLALLVFLNLHKK 330


>gi|26987718|ref|NP_743143.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
 gi|24982406|gb|AAN66607.1|AE016288_6 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|313497348|gb|ADR58714.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
          Length = 371

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 23/318 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P  
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLAPLG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++Q+ ++      F  L    F  L D        + + +   L G+FI + R    
Sbjct: 125 VAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLGGVFISEKRFNQD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   I  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 185 KTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +      S L+           +     R+E   RL+  +   +  L+++    
Sbjct: 245 VAEEVTEREALPTSELI----------GKEGLRERAELQWRLSLPILVFVVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISL 312
            R   RQ + +  +   L
Sbjct: 293 SRVNPRQGRFLKLLPAIL 310


>gi|114331100|ref|YP_747322.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
 gi|114308114|gb|ABI59357.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
          Length = 357

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 123/334 (36%), Gaps = 22/334 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R +   F +  + ++ +     + + +    + T     + K+ G      
Sbjct: 1   MGIIERYISRELLLPFFVVTIILIGLFVSFSVARFLTGAVAETLGAIAMFKLVGLKTIIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +   + L+ MNR+ E+ ++ + G     +I+ V  +A+ +++   +    
Sbjct: 61  LEVLVPIAFYVAVIHGLSRMNRDQEINVLRSVGYGDNQIIRTVFIIALPIAVLSGVLSIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNP-NNTLQGIFIVDS 178
             P   +    ++A+A+  L     +   F+        I I   +     ++GIF    
Sbjct: 121 ARPWAYAESYVMNAQAEAELNTDRFQPGRFYGSEKSGRVIFIRGKDDLEKRMEGIF-HYI 179

Query: 179 RDTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R  +  +I  ++ G            I L DG+++R    +   S ++F+       + N
Sbjct: 180 RTAENREIIVSREGYQQPMTQEQWPYIELLDGKIYRLGYDAARDSTVQFEKMIY--FNEN 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +    +   L N                 +E   RL++    ++  LI++    
Sbjct: 238 DQAQNYRRKAASTQSLWNSEQPQE----------IAELQWRLSRPAATILLALIAVSF-- 285

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
                 ++ K    FI  ++ F V++  S +   
Sbjct: 286 -TRTAPRKDKADRTFIVAALVFAVYYNLSGLAKT 318


>gi|327484988|gb|AEA79395.1| Predicted permease [Vibrio cholerae LMA3894-4]
          Length = 366

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|206602447|gb|EDZ38928.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 378

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 116/337 (34%), Gaps = 21/337 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F++  L +V +    Q L  +NL+ +   S+  +L++   + P  
Sbjct: 1   MKIIHRYLFLELLPPFVIGLLVLVVLILTQQTLMIMNLLVNKGLSIPTVLRLVMMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E+  +  +G     L+ P++  A L  +  F     
Sbjct: 61  LTMIIPVSVLAASTATFNRLASDGEITALKASGIGLSRLLWPLVLFAFLGYVGSFYMSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            E     +++++ +          +   +F    D   I + +    + +QG+FI     
Sbjct: 121 AEETQGMSLQEMISTVLKKKMSLGIRPQVFNNFMDRFVIYVDRMPTFSRMQGVFIYQEGK 180

Query: 181 TQTHKI-YYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            ++      A+ GS+  +        I L  G + +          ++F SY L     +
Sbjct: 181 GKSPSTVIMAREGSLLNEENGRPGIRIQLRSGTLLQGGAAQ---QFVRFSSYDLTIFGKS 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           +         Q L               +   +   E   R   + +P    + + +   
Sbjct: 238 AGATEKSPTIQEL-------EKKIGRSSKPDVSLLRELEDRYKNYTYPFSCLIFAFLGIP 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                ++  K+     + +        F YI++ ++ 
Sbjct: 291 FGIYAKRSGKLAGFVFATASVI-----FFYILNTVDD 322


>gi|319896844|ref|YP_004135039.1| inner membrane protein [Haemophilus influenzae F3031]
 gi|317432348|emb|CBY80703.1| conserved inner membrane protein [Haemophilus influenzae F3031]
          Length = 364

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 113/314 (35%), Gaps = 18/314 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +   L ++ I +  Q ++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILIRYLIKEVFKSQIAILLILLLIFFSQQFVRVLGAAANGNVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L +++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVKVALLMSLLTASIATYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++  +       +N +  +++      +
Sbjct: 122 PWAIQKQANIVEDAKANPTMGVLSSGQFISTSNNNVVLFIDQIKDNQIHNVYLFQITPKK 181

Query: 183 --THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + +    + +  D  I  F  Y        +  
Sbjct: 182 QIKPSVVTAEKGELIALPNGDQVLNLKNTQRVEGTSVLPDFRITHFDEYQAYLGHQETEN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A +  L  L+  +              ++E H R+T  L      L++++A     
Sbjct: 242 NADEAAELTLVQLIQQDSP----------AAKAELHWRITLIL---AVPLMALIAVPLSR 288

Query: 298 LVRQRKKIHPIFIS 311
           +  ++ +   I  +
Sbjct: 289 VNPRQGRFAKILPA 302


>gi|325279047|ref|YP_004251589.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324310856|gb|ADY31409.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 487

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 99/240 (41%), Gaps = 8/240 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   +++L+     F+ +    +F+  +  + + I+ +        ++ ++  Y+  T+
Sbjct: 1   MKKLHIFMLKSFIGPFVATFFISMFVLIMQFLWRMIDEIVGKGLEFTVIAELLIYVATTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     S+  N EL+ + + G S   ++KP++ L I L++F F+  N 
Sbjct: 61  VPMALPLAVLLSSIMTFGSLGENYELIALKSAGISLYRIMKPLIILIICLTVFAFVFSNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P        L    +        +E +F    +   IKI K N     +  + I + +
Sbjct: 121 ILPVANLKFYSLLYDIRKQKPEMSFKEGIFTNDLEGYSIKIDKINKETGMMYNMLIYEHK 180

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDIS--IMKFKSYTLQTES 232
           D    + +  A SG +  D ++    ++L +G  +    +    S     F+      E+
Sbjct: 181 DGSGNYDVTKADSGMMISDAKSNLMELVLYNGHSYTDEGMKNPSSRKTFPFRRLKFDKET 240



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 210 RKSPISKDISIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNY---RPEL 264
           ++  I  D S  KF                  +    Q    +   N ++ +Y   + E 
Sbjct: 306 QRDSILADQSRGKFSDPDSLFTAFDIEEQRRAVDNALQYAREVKQRNQDDLHYYVAQQEN 365

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +   + E+H++ T      IF  I    A   A++R+     P+ +S+ + F +++  S 
Sbjct: 366 VIKSQLEWHRKFTLSFACFIFFFIG---APLGAIIRKGGLGMPVVVSV-LLFIIYYIISM 421

Query: 325 IIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKKKYT 359
           +  +  +     P   +++  F +  + +++  K  T
Sbjct: 422 MGERSAREAVISPAAGMWISAFILLPLGIILTYKSVT 458


>gi|113474402|ref|YP_720463.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
 gi|110165450|gb|ABG49990.1| permease YjgP/YjgQ [Trichodesmium erythraeum IMS101]
          Length = 392

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 143/377 (37%), Gaps = 27/377 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +   FL        +   V  + + +  V+ S   ++I +++    +P 
Sbjct: 19  ISVMDRYIIAELIGPFLFGVGLFSSLGITVGAMFELVRKVTESGLPISIAIQVFLLKMPE 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V + M+ ++E++ + + G S   +I P + L++ ++   F    
Sbjct: 79  FIGLAFPMAMILTTLMVYSQMSGHSEIVALRSCGISIYRMIIPTIILSLTVTTLSFALNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNP 166
           II P        +  K        + EEN+F+     +                  K++ 
Sbjct: 139 IIVPSANYQASLILEKTLEQENPPFKEENIFYPEFGKVKQPDGSQDDTLTRLFYAEKFD- 197

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              +QG+ I+D       +I  ++S + +       L +G ++  SP     +I+KF   
Sbjct: 198 GKYMQGVTILDRSQYGVDQIVSSESATWNSAENIWDLFNGTIYLVSPDGSYRNIVKFDHK 257

Query: 227 TLQTESANSSTIVLKA--NDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            L+  +A       +      N+S     L     + NYR  +    R +  ++L     
Sbjct: 258 KLKLSTAPLDLAGKRRTYKQMNISQSYEYLELMRLSGNYRKVVKTQVRIQ--QKLALPFV 315

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-- 339
            ++ GL+      +    R+  +     IS+ I F  +   S+I   + Q     P L  
Sbjct: 316 CLVMGLVGAALGIRPQ--RKANRGTSFGISVIIIFAYYL-LSFITGAMGQKEILTPFLAG 372

Query: 340 YLFLFCISSIFLLMIKK 356
           +L  F    + + ++ +
Sbjct: 373 WLPNFLGLGVAVFLLAR 389


>gi|209964085|ref|YP_002297000.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209957551|gb|ACI98187.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 414

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 145/371 (39%), Gaps = 21/371 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YIL    +   +S + ++    + +IL+  +L+++      ++L+++  L+P  L
Sbjct: 21  RLIDRYILTETAKPLALSLVVVMLALLLERILRLFDLLANHGGPFQLVLRMAANLVPHYL 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+       EL  + ++G S   + +P L+L   L +F  +    I
Sbjct: 81  GLALPAAFFISMFVVVARFGDENELDALQSSGLSVPRITRPFLWLGTGLMVFSVLLFGFI 140

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   + +      A   + + ++ F      + I     +P    L+ +F+   RD
Sbjct: 141 QPYSRYAYQAIHYAVVNAAWDATVPQSAFVDAGQGVTITADMVDPTGRNLERVFVQQLRD 200

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ----TES 232
            +      A+SG +    D  R  + L++G V  ++     + +++F   TL      E+
Sbjct: 201 GEEWVT-TAESGRLGVSDDRKRILLTLDNG-VQVRTRPDATVEVVRFGRLTLDREFTLEA 258

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                      +  L  L     + P        T  +EFH RL + +   +  L+++  
Sbjct: 259 PPFRPRGGSERELTLVEL-WQEMHQPITLV-PRGTLEAEFHARLVRAVSLPLMPLLALPM 316

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI---LYLFLFCISSI 349
                  R+      + I+L+ +  V +  S  + +   +   +P    +++     + +
Sbjct: 317 GMAAKRARRG-----LGIALAAAILVLYHHSIQMGESLADIGRVPAALGIWVPFVVFALL 371

Query: 350 FLLMIKKKYTK 360
              +  +   +
Sbjct: 372 CGWLFYRTQDR 382


>gi|237807325|ref|YP_002891765.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
 gi|237499586|gb|ACQ92179.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
          Length = 367

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 137/363 (37%), Gaps = 20/363 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            YI +   ++ L   L ++ I    Q ++ +   +  +   +++ ++    IP +  ++ 
Sbjct: 5   RYIFKETLKTQLSILLILLLIFTSQQFIRILARAADGSIPSSLIGQMMLLNIPYMGLLLL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +  ++E+ ++   G     +++  L LA+L ++   ++   + P  
Sbjct: 65  PISLFIAILFAHGRLYADSEMTVLRAIGVGPSYIMRISLVLALLTTVVATVNTMWLAPMA 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR-DTQ 182
           R    QL   A+       LE   F  LD   L   +     +   LQ IF++    D  
Sbjct: 125 REKQSQLLDAAKADPLSIPLESGRFLSLDGGHLTAYVEDVQDSGRSLQRIFLLQRSPDPA 184

Query: 183 THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              I  A SG +  D Q    + L +G+ +  +P S   SI  F  Y  Q +  +     
Sbjct: 185 EAAIIVAASGHLTNDAQGTPWVTLANGKRYAGTPPSTQFSIANFAEYKAQLQRKDIEPST 244

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRAL 298
            KA     S L N                 +E+  R+   L   +  LI++ +A      
Sbjct: 245 PKARALPSSALYNSTDK----------KQIAEWQWRVVLPLSIPLMTLIAVPLAVVNPRQ 294

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R  K +  + + LS    +  G S I     Q P   P LY+     + +F + +  K 
Sbjct: 295 GRYAKLLPAVMLYLSYFLLLSAGQSAIER--GQLPEM-PGLYIIPVLFTLLFAVPMNIKS 351

Query: 359 TKI 361
           T++
Sbjct: 352 TRL 354


>gi|315634608|ref|ZP_07889892.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
 gi|315476556|gb|EFU67304.1| inner membrane protein YjgP [Aggregatibacter segnis ATCC 33393]
          Length = 364

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 113/307 (36%), Gaps = 19/307 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGQVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G     L+K VL L++        +   + 
Sbjct: 62  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGSKILVKVVLILSLFTGALAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P   +    +  +A+       L    F   ++ D  + I      N +  +++  ++  
Sbjct: 122 PWAINKQVAIIEEAKANPNMGALSAGQFMTANNSDFVLFIDDI-QENQINNVYVFQTQPK 180

Query: 182 Q--THKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+ G +       Q + L + +    + I  D  I  F  Y          
Sbjct: 181 GQTKPSVIVAEQGELKSLPNGDQILRLQNSDRFEGTAILPDFRITHFDEYQAYLGHKAVE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +A + +L  LLN +              ++EFH RLT  L   I  L+++     R
Sbjct: 241 DDSNEAGEMSLMQLLNAD----------TPAMKTEFHWRLTLILAVPIMALLAVP--LSR 288

Query: 297 ALVRQRK 303
              RQ +
Sbjct: 289 VNPRQGR 295


>gi|296283030|ref|ZP_06861028.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 407

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 128/364 (35%), Gaps = 19/364 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R      +        +  + Q+L+    VS+    + ++ ++ G L+P   
Sbjct: 5   SRLDRYIFRLTIVPMIGVFALAATLLMLEQMLKLFRFVSTEGGPVGVVFQMLGTLLPDYA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      +  ++EL ++   G     L++    + + L          +
Sbjct: 65  VLAIPLGLLLGTLFAFRQLALSSELDVMRAVGLGYGRLLRVPFAITLALMAVNAAIVFYV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  +   ++L    +     + ++   F  L D + ++I +   +   L+GIF   + +
Sbjct: 125 QPVSKYYYEELQFDLRSGALGASIKVGEFTTLADRMALRIEESEDSGRKLKGIFARINAE 184

Query: 181 TQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                   A+ G       + D   + L+DG + +  P  +   ++ F  + L  +    
Sbjct: 185 DGQTLSISAREGRFLSTSDNPDTIILRLSDGTIVQ-DPPGETPRVLSFTEHDLPIDLPAI 243

Query: 236 STIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                +     +  L  LL    ++     + L + ++ F+ R+ +    +   L+++  
Sbjct: 244 EQFRARGEAEREYILPELLRMGWSDTTTEAQRLGS-QASFNYRMVELAMMLFMPLLAVAL 302

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSI 349
           A      ++      +F+++ +         Y+         +P     L+      + +
Sbjct: 303 AIPP---KRSTSALGVFVAVILVVAYHKVNQYMQDFAALGRVDPTLG--LWGPFAIFAGL 357

Query: 350 FLLM 353
            L  
Sbjct: 358 ILWW 361


>gi|325132745|gb|EGC55428.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
          Length = 396

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 147 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 267 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|300718281|ref|YP_003743084.1| permease [Erwinia billingiae Eb661]
 gi|299064117|emb|CAX61237.1| Putative permease [Erwinia billingiae Eb661]
          Length = 356

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 140/363 (38%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI   I R  ++   F+V +       + +   ++ T +L ++  +  Y +   
Sbjct: 1   MSLIERYITVEIRRLVMVIVGFLVVMFASYSAQRYLTDAANGTLALQVVFDVVCYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    + T   L  +  ++E+  I   G S + L K VLFLAI L++ + +    
Sbjct: 61  LEMLLPVGLYVATAVALGQLYTDSEITAIFAAGASPVRLYKAVLFLAIPLAVVVTLLSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
             P     I +L  ++Q  L  S+L+ N F        +  S+ +P ++ L    I  SR
Sbjct: 121 GRPWAYGNIYRLEQQSQSVLDVSHLQANKFNVNGSGRMVMASRIDPASHQLTDALIY-SR 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             +   +Y A S  +        ++ L +G  +         ++  + S  +  +    S
Sbjct: 180 SGKNTNLYRAHSVVVTDPSPATPSVNLRNGTAYVLDREGAQDNMQHYHSLNIALKPFIES 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V + +        + +P +           ++E   R ++ L  ++  L++I     R
Sbjct: 240 QEVRRKSAPVADLWCSSDPAD-----------KAELQWRESRGLSTLLMVLLAIP--LSR 286

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ +    + ++L  +   + G          +   IP ++L    + +     + +
Sbjct: 287 TKPRQGRYATLLPLTLLFTAIFYGGNVCRTLVANGSLPAIPGVWLVPLVMLTGLAFCLAR 346

Query: 357 KYT 359
            ++
Sbjct: 347 DFS 349


>gi|229527563|ref|ZP_04416955.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
 gi|229335195|gb|EEO00680.1| hypothetical protein VCG_000632 [Vibrio cholerae 12129(1)]
          Length = 349

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 119/347 (34%), Gaps = 19/347 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L +G  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYEGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                       LLN                ++E   R++     V   L++++     A
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRIS---LVVCIPLLTMLVVPLSA 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +  ++ +   +  ++ I    F   S       ++     I+ L+  
Sbjct: 289 VNPRQGRFAKMGPAILIYLTYFLALS-ATKSAIEDGSLPVIIGLWPI 334


>gi|237736826|ref|ZP_04567307.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420688|gb|EEO35735.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 358

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 132/363 (36%), Gaps = 15/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL  I    +       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKLIDKYILNEIKIPVIFGVSLFTFIFLIDIIVAMMENIIVKGISIIDVMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   +   G S   ++KP+   A  +++F+F  +  
Sbjct: 61  LSQTIPMGMFLGIMLTFSKFTRTSEATAMSAVGMSLRDIVKPIFVAACCVTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-S 178
           I P+  + ++ L+AK         L+E  F    D+  + I +        +GI I   +
Sbjct: 121 IIPRSVAKLQFLTAKIAYENPVFQLKEKTFIDEVDEYNLYIDRMEGKEKKAKGILIFQKA 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSS 236
            D     +   +         A++L + + +  +   K++   +F      L    +   
Sbjct: 181 EDKPFPTVIVGEEAYWK--DSAMVLINSKFYNFNDKGKEVLRGEFDEKRIPLAAYFSEIE 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V       +  LL       +  P     Y+ E +K+L      +   ++S++     
Sbjct: 239 VKVKDIEAMGIGTLL---KEMKDKTPAEKIPYKVEINKKLAVPFSTM---MLSLLGVFLS 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMI 354
               +  K     +SL + F      +  +    +   P +I + ++    +  + L M 
Sbjct: 293 IGHHRSGKGANFALSLIVIFSYITCLNVGMVMATKGIIPAFIGV-WIPNVILFLLTLFMY 351

Query: 355 KKK 357
           KKK
Sbjct: 352 KKK 354


>gi|148556806|ref|YP_001264388.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
 gi|148501996|gb|ABQ70250.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
          Length = 400

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 128/365 (35%), Gaps = 17/365 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R I    L + +    +  + ++L+  + V S    ++++ ++   LIP  +
Sbjct: 5   TLTDRYVARLIATPLLATLVIAAMLLTLDKMLRLFDFVVSEGGPVSVVWRMLANLIPEYM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +        +  ++EL +    G S   L++   + A+ L++        I
Sbjct: 65  SLGIPIGLMLGCLLAFRKLALSSELDVFRAVGMSYGRLLRVPYYYAVALALLNLAIVGFI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSRD 180
           +P  R   + L  + +     + ++   F +L   + I++         L GIF++    
Sbjct: 125 QPYSRYAYEGLRFELRSGALGASIKVGEFTKLGKRMTIRVESSREGGRELSGIFVMTESK 184

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                   A+ G      D D   + L  G +   +P  K+  +++F  + L  +     
Sbjct: 185 DGKSLAVTAEHGQFLATDDPDTIILRLQKGVLVHDAPQFKEPRVLQFVGHDLPIDLPKME 244

Query: 237 TIVLKAN---DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +     +  +  L+    +      +    +RSEFH RL +     +  +  +   
Sbjct: 245 AFRQRGGRDLEMTMPELVV-TAHQATTPAKQRAQFRSEFHFRLVE-----VATMFLLPML 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGV---FWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                V  ++    + + LSI   V                    +  L++     +++ 
Sbjct: 299 ALALAVPPKRSSSALGVFLSIVMIVTQHKINEYAASVAALGRIDPLIALWVPFLAFAALV 358

Query: 351 LLMIK 355
             M +
Sbjct: 359 WWMYR 363


>gi|37681090|ref|NP_935699.1| permease [Vibrio vulnificus YJ016]
 gi|37199840|dbj|BAC95670.1| predicted permease [Vibrio vulnificus YJ016]
          Length = 366

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+     RD
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + +A  G +      RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                +      L+ NP+P             ++E   R++     +   L++++     
Sbjct: 242 RGRDWDAIPTLELIGNPDPE-----------AQAELQWRVSL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E+     +    PI  L L     
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIM 344


>gi|86133416|ref|ZP_01051998.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
 gi|85820279|gb|EAQ41426.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
          Length = 483

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 16/251 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+     F+ + L ++F+  +  + Q    ++    S+  +LK   Y    +
Sbjct: 1   MKILDKYILKSFLVPFIATFLIVLFVLVMQALWQAFENIAGKGISVIFILKFLYYTTLMI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L ++  N E     + G S   L++P+  LAI LS   F+  N 
Sbjct: 61  IPQALPIGVLLSSIMALGNLGENYEFAAAKSAGVSLQRLVRPIGILAIALSGLNFLFLNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVD- 177
           + P      + L    +       L    F        IK  +      N L+ ++I D 
Sbjct: 121 VFPYANLKQRNLYLNIKKKKPALALVPGSFNADIPGYQIKFDEKYGEEENLLKKVWIYDL 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI---------MKFK 224
           + +    K+  A+SG I  +        IL +G  + +   S   +I           FK
Sbjct: 181 TSNRGNQKVITAESGKIVTEEGSRYMTFILYNGNYYEEHVKSARTTIKRKKMAASSATFK 240

Query: 225 SYTLQTESANS 235
            Y    +  ++
Sbjct: 241 EYEFNIDIGDT 251


>gi|115352567|ref|YP_774406.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|115282555|gb|ABI88072.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
          Length = 363

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 139/365 (38%), Gaps = 23/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  L + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPLILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIKARFQQRDEISLLAPGQFRESASNHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  + +G  +     + ++L DG  +  +P   +  IM+F+ Y ++  S   + +
Sbjct: 182 GKV-NIVVSHTGHTETKDGDRFVVLEDGRRYDGTPGQPNFKIMEFQRYGVKITSTPVTNV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +      L NP  +N            +EF  R    L  +   ++ I        
Sbjct: 241 PTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQN 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLMI 354
            R+ + I+ + +++ I        + +  +IEQ        +  L++ +  I ++   + 
Sbjct: 288 PRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVALIFWLR 346

Query: 355 KKKYT 359
            +   
Sbjct: 347 VRNRP 351


>gi|330811514|ref|YP_004355976.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379622|gb|AEA70972.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 373

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 130/357 (36%), Gaps = 27/357 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAASGALDPGSLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +  ++E+ ++  TG S+  L +  LF A L+++ +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLDSEMTVLSATGMSQQRLFRMTLFPATLVALVVAWLSLSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +  + L  +      F  L    F  L D   +    + + +   L G+FI       D
Sbjct: 125 ATQFQLLINQQDAMTEFDTLVPGRFQALRDGTRVTYTEQLSDDRIDLGGVFITQKNLSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           ++  +   +  A+ G  +++      +IL +G  +   P   D   +K+ +Y +      
Sbjct: 185 AKKDRGISVLVAEKGRQEINPDGNRYLILENGYRYDGKPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  V   +    + LL  +              R+E   RL+  L   I  L+++    
Sbjct: 245 VSDEVTDRDAMPTASLLGNDD----------IRARTELQWRLSLPLLVFIVTLMAVP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            R   RQ + +  +   L   +  +           +     P L   L+ + SIFL
Sbjct: 293 SRVNPRQGRFLKLLPAIL--LYMAYLTILISARGALEKGKIPPAL--GLWWVHSIFL 345


>gi|288940756|ref|YP_003442996.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
 gi|288896128|gb|ADC61964.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
          Length = 380

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 134/361 (37%), Gaps = 29/361 (8%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R   + FL   L +V I   +  L+ +  V+     ++++ +     I   +  + P  F
Sbjct: 17  REAAQVFLAIVLVLVLILASLMFLRTLEEVNLGGLGVDVVFRYLSLQIQRDISSLLPPAF 76

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L    R++EL+ +   G     L +  L LA+ ++         ++P   + I
Sbjct: 77  FLAILVTLARFARDSELIAMQACGVGPPRLYRTFLLLAVPVAFVTGWVALDLKPHAAAGI 136

Query: 130 KQ-LSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
           +Q    + + A   + L+   F+  +   + + I + + +  L  +F++D R  +T  + 
Sbjct: 137 QQIRLQQKEQAAQIAGLQAGRFYVEEQGKVVVYIGEIDQHKLLGDVFVLDRRGEKTRLVV 196

Query: 188 YAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            + SG   ++       + L  G        S    I  F+ Y ++   A S+       
Sbjct: 197 -SDSGRHRIEESTGDHLVTLTQGHRFDGQAGSGAYLIGDFERYEIRLADAGSAPHAFNKR 255

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                    P P +  +  EL +  R E   RL   L  +   +++I   D     R   
Sbjct: 256 A------TIPTP-DLMHSDELAD--RVELEHRLAAPLSILTLAVLAIPLVDPSPRQRTTG 306

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQ------NPYYIPILYLFLFCISSIFLLMIKKK 357
           ++        ++   ++ F  +    E        P ++  L+  L  +  + L+++ + 
Sbjct: 307 RM-------LLALLAYFSFFNLQRLAESWMAAGVTPAWLGSLWYQLAILVFVHLMLLPEN 359

Query: 358 Y 358
           +
Sbjct: 360 F 360


>gi|240113703|ref|ZP_04728193.1| hypothetical protein NgonM_09082 [Neisseria gonorrhoeae MS11]
 gi|268599771|ref|ZP_06133938.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268583902|gb|EEZ48578.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
          Length = 396

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 147 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 267 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|83721258|ref|YP_441378.1| permease [Burkholderia thailandensis E264]
 gi|167580136|ref|ZP_02373010.1| permease, putative [Burkholderia thailandensis TXDOH]
 gi|257139949|ref|ZP_05588211.1| permease, putative [Burkholderia thailandensis E264]
 gi|83655083|gb|ABC39146.1| permease, putative [Burkholderia thailandensis E264]
          Length = 365

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 133/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQVVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L+  +  + +    + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIPFGLGLIGLHAIIAGVVAFLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|289523522|ref|ZP_06440376.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503214|gb|EFD24378.1| membrane protein, YjgP/YjgQ family [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 369

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 125/350 (35%), Gaps = 15/350 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTV 60
           +  + +I+     +F+   +    +     +L    +L+  S    +I++++  Y +P V
Sbjct: 9   RLLDKFIITEFYPTFVFGVMVFTVLLVAGDLLFDIADLLIQSRVPFSIVIRLFVYRLPGV 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      +   +EL  +  +G S   +++PV   +IL+  F  +    
Sbjct: 69  IVLTLPMAALLATILSFGKLATQSELTALRASGISFYRILRPVFLASILIGGFALLLNET 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNP-NNTLQGIFI 175
           + P        +          S L+E +F + + D      I I K  P    +  + I
Sbjct: 129 LVPLADRAADNIMRYEVARQKPSLLKEQMFLKEERDGALSRVIYIGKLFPQEGNMDDVLI 188

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESA 233
            +    +  +I  A++G  D       L +G+V   +       +  F+    +L    +
Sbjct: 189 QEFESGEITRILTAKNG--DWKEGQWWLYNGQVFNVTKEGFVEPLFSFEKQQLSLPLSPS 246

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              T        +   L N      N +   + +     H RL      V+  L+    A
Sbjct: 247 QVVTSSQDPKKMSAFELYN-YIKLMNVQGSDVNSLWVLLHLRLAVPWASVVLALVG---A 302

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              A  R+      I +S+ + F  +  F      + Q  Y  P+L  ++
Sbjct: 303 SVGAGTRRSGSGMGIGVSILLVFAYYV-FMSFCRSLGQGGYIPPLLAAWM 351


>gi|326423843|ref|NP_760389.2| hypothetical protein VV1_1477 [Vibrio vulnificus CMCP6]
 gi|319999213|gb|AAO09916.2| Putative membrane protein [Vibrio vulnificus CMCP6]
          Length = 366

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+     RD
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + +A  G +      RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                +      L+ NP+P             ++E   R++     +   L++++     
Sbjct: 242 RGRDWDAIPTLELIGNPDPE-----------AQAELQWRVSL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E+     +    PI  L L     
Sbjct: 288 AVSPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIM 344


>gi|90416560|ref|ZP_01224491.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
           HTCC2207]
 gi|90331759|gb|EAS46987.1| hypothetical protein GB2207_05142 [marine gamma proteobacterium
           HTCC2207]
          Length = 370

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 125/369 (33%), Gaps = 24/369 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +    C+ ++ +    + ++ +    +     N +  + GY IP+ L 
Sbjct: 2   IIFRYLCREILSATTAVCVILLLVLMSGRFVKYLGKAVAGDMDSNSIFAMIGYRIPSFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +        +    E+ ++   G S   L+   L +A + ++        + 
Sbjct: 62  LTLPLAFFLAVLLSFGRLYVQNEMSVLKACGVSERRLMGYTLIIASVFALATGWLSLSVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIV----- 176
           P   +  + L    +       L    F+ L              +  L  IF+      
Sbjct: 122 PSGMTKAEALFDAEKSRSELDKLMPKKFYSLSGGKGVTYAEAVTEDRELDEIFLAMTAGS 181

Query: 177 DSRDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           D    +   +  A  G      +   + +++  G      P   D  I +F+ Y  + E 
Sbjct: 182 DENSDRRLILVLADKGRQQQAENSSERYLVMESGYRIEGVPGQNDYQITRFEEYGSRLED 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  S    K +      LL    N+P  +  L          RL+  L  ++  ++++  
Sbjct: 242 SAPSIRKTKTDAMATGLLLG--SNDPELQATLQ--------WRLSIPLMVLVVTILAVP- 290

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-SSIFL 351
              R   RQ +    +  ++++ F      + +   +E     I +  L +  +   I +
Sbjct: 291 -LSRTNNRQGRY-GKLLPAIALYFTYLVALNAMRGALESGAIPISVTLLPVHAVYLGIAV 348

Query: 352 LMIKKKYTK 360
           L+++    K
Sbjct: 349 LLLRSGGPK 357


>gi|186681603|ref|YP_001864799.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
 gi|186464055|gb|ACC79856.1| permease YjgP/YjgQ family protein [Nostoc punctiforme PCC 73102]
          Length = 391

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 128/359 (35%), Gaps = 22/359 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   F         +   +  +   +  +  S   ++I +++     P  
Sbjct: 19  TIMDRYLTSELIAPFFFGVGAFSSLGVTIDAVFDLVRKIVESGLPIDIAIQVFLLKFPNF 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + ++  +EL+ +   G S   ++   + L+++++   F+    
Sbjct: 79  IVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRIVLTAVMLSLVVTGMTFVFNEQ 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNPN 167
           I P           KA  +   ++ ++N+F+    D+                  +++  
Sbjct: 139 IAPAANYQAGVTLDKALKSDKPAFKQQNIFYPEYQDVIQPDGSKNRILTRLFYADQFD-G 197

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             + G+ I+D      ++I  ++S   +  +      +G ++  +      +I++F+   
Sbjct: 198 KRMTGLTIIDRSTKNLNQIVVSESAQWNPSQNIWDFYNGTIYFVAADRSYRNIVRFEHQQ 257

Query: 228 LQTESANSS--TIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           LQ      S         + N+S  L+           + +        ++++     V+
Sbjct: 258 LQLPRTPLSLAEKSRDYGEMNISEALDQLQVEYLGGDRQKIRKLEVRIQQKISLPFVCVV 317

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           F    +V A   ++ ++  +     IS+ + F  +  F +I   I Q     P +  +L
Sbjct: 318 F---GLVGAAMGSIPQRTGRGTSFGISVVVIFSYYLIF-FISGAIAQAGALSPFMGAWL 372


>gi|304311789|ref|YP_003811387.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
 gi|301797522|emb|CBL45742.1| Predicted permease YjgP/YjgQ family [gamma proteobacterium HdN1]
          Length = 369

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 134/366 (36%), Gaps = 22/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + L     +V I    + ++ +   +    +  ++  +  Y +P  L 
Sbjct: 2   IIYRYLSRQLLVTTLAVTGVLVLILMGGRFIKYLGGAADGVLTGALIFWVMLYKLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        M    E+++++  G SR  L+K  L  A+  ++ +    N + 
Sbjct: 62  LILPLGLFLGILLSYGRMYLENEMVVLEACGMSRGALVKHTLMPALCTALIVGFIANYVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNN-TLQGIFI--VDS 178
           P C +  + +  + +       L    F    + + +  I   +  +  +Q +FI   + 
Sbjct: 122 PLCNTKAQTMLDEQKRKSALELLSPGQFHATRNAMTVTYIEDIDGKHKEMQNLFIVNYNQ 181

Query: 179 RDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            + +  +I  A+ G      D   + +++ +G     S      +   F  Y L+ +   
Sbjct: 182 ANPEKIEITRAKRGDYQIHEDTGARYLVMKEGYRFEGSAGMAKFNRTAFDVYQLKLDPPR 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              I  +    + + L+           E     R+E   R+     PV+  +I+ +A  
Sbjct: 242 PLEIEGQYTLMSDAQLV----------LEGSLAARAELQWRMA---LPVLVPIIAYLAVI 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              +  ++ +   +  S+ +          + +KI +     P L L+   I+   L + 
Sbjct: 289 LSKVNPRQGRYMKLLPSIVLYLVYLSLLLAVKNKIAK-GKMDPELSLWAVHIAFFLLAVF 347

Query: 355 KKKYTK 360
             K+++
Sbjct: 348 MHKWSE 353


>gi|260914418|ref|ZP_05920887.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
 gi|260631519|gb|EEX49701.1| inner membrane protein YjgP [Pasteurella dagmatis ATCC 43325]
          Length = 368

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 123/314 (39%), Gaps = 18/314 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ + +S +     ++ I +  Q+++ +   ++     +++L + G  +PT+  
Sbjct: 2   ILTRYLIKEVFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVLSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++ V+ L++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVVMLLSLLTASIATYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++  +A+   T   L    F   + + ++       +N +  +++  +R+  
Sbjct: 122 PWAINKQSEILQEAKANPTMGALAAGQFISTNSNEFVLFIDKIVDNQINDVYLFQTRERG 181

Query: 183 T--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L + E    S    D  I  F  Y       + + 
Sbjct: 182 NLKPAVLVAERGELKSLPNGDQILTLENSERVEGSAALPDFRITHFDEYQAYLGHQDINN 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +++ LLN                ++E + R++     +   L++++A     
Sbjct: 242 EKNEAEELSVNELLNSTSP----------AAKAELNWRVS---LVLAVPLMALIAVPLSR 288

Query: 298 LVRQRKKIHPIFIS 311
           +  ++ +   +  +
Sbjct: 289 VNPRQGRFAKVLPA 302


>gi|167618242|ref|ZP_02386873.1| permease, putative [Burkholderia thailandensis Bt4]
          Length = 365

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 133/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEH 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ ++    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQNKQVVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L+  +  + +    + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIPFGLGLIGLHAIIAGVVAFLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|119486322|ref|ZP_01620381.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
 gi|119456535|gb|EAW37665.1| hypothetical protein L8106_16749 [Lyngbya sp. PCC 8106]
          Length = 392

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 143/380 (37%), Gaps = 28/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +   FL        +A  +  +   +  V+ S   + I ++I    +P 
Sbjct: 19  LSILDRYIISELIAPFLFGVGLFTSVALSIDTVFDLVRKVAESGLDVGIAMQIFLLKMPE 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   M+ ++E++ + + G S   L+ P L  ++ ++  +F+   
Sbjct: 79  FVVLSFPMSMVLTTLIVYGRMSSDSEIVALRSCGISIYRLVIPTLIFSLFITASMFVFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFF---------RLDDDLYIKISKYNP---- 166
           +I P           +A         EEN+F+           D+++ I +  +      
Sbjct: 139 LIVPATNYRASITLEQALHQDRLPVQEENIFYPEYRTIPIEDSDEEITILVRLFYAQEFD 198

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              +  + I+D       +I  ++S   +  +Q+    DG V+   P     +I++F   
Sbjct: 199 GKYMNEVTILDKSQQGITQIISSESAVWNGKQQSWDFFDGTVYMIDPKGSYRNIIRFDHK 258

Query: 227 TLQTE--SANSSTIVLKANDQNL---SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            L+      + ++   + ++ N+      L    ++ N +       R +  ++ +    
Sbjct: 259 ELKLPRVPLDLASRKRRYDEMNIVQAHEYLELMKSSGNEKIVQKTKVRIQ--QKYSLPFV 316

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            V+FGL+    A   +  ++  +     IS+ I F  +   ++I   + Q     P L  
Sbjct: 317 CVVFGLLG---AALGSQHQRTNRSTSFGISIVIIFSYYM-LAFITGAMGQKAIISPFLAG 372

Query: 342 FL---FCISSIFLLMIKKKY 358
           +L     + +    + K   
Sbjct: 373 WLPIVIGLGASGFFLYKNSR 392


>gi|302392908|ref|YP_003828728.1| permease [Acetohalobium arabaticum DSM 5501]
 gi|302204985|gb|ADL13663.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
          Length = 364

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 138/354 (38%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK  + Y+L  +    L        I     IL +  +L+     S     ++    +P 
Sbjct: 1   MKIIDRYLLTELLSPLLFGIFAFTSIFVGTDILFELADLMIEWGVSAVTAGQLFILSLPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+ +  P    + T      ++ ++E++ +   G S I LI PVL +A+LLS    ++  
Sbjct: 61  VIVLTFPMSMLLATLLSFGRLSGDSEVVALKAGGVSFIRLIIPVLIVALLLSGLTILANE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-------NPNNTLQG 172
            I P+ +   +++    +        ++NL     D    KI            + T++ 
Sbjct: 121 TIVPQSKDAYRRIVWNIKHQEKMPTTQKNLRIAPLDKKTGKIDYIFYAYHFDGSDLTMEE 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           + + D ++ +  ++  A+      +R   I  DG ++  +   K  ++ +F++YT++  +
Sbjct: 181 VSLQDYQNGKLVQVIEAKRARWTDERWQFI--DGTIYNVNSKDKVPTM-EFETYTVKKLN 237

Query: 233 ANSSTIVL---KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                I       ++ ++  L N + N      + + + +  +++R        IF LI 
Sbjct: 238 REPKEISRAQKDPDEMSIEEL-NRHINLKEEEGKDVASLKVLYYQRYAIPFSCFIFALIG 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                +     +      + +S+ I F +++    I   + Q     P +  +L
Sbjct: 297 APLGLQPN---RSGASIGLGLSIVIIF-IYYTLMTIGSTLGQTGTLPPAVGAWL 346


>gi|307299316|ref|ZP_07579117.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915112|gb|EFN45498.1| permease YjgP/YjgQ family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1438

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 123/344 (35%), Gaps = 5/344 (1%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             S  +     +    +  +    +++      ++ L  +  Y +P  + +  P    + 
Sbjct: 1   MGSIFVGLAGFIIFVSLELLYYLSDMIIRYKVGIDKLFLLIYYNLPEFIVLGIPVGILLA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              VL+ M  + EL+ +   G S   L+ P L + I+ S F ++  + + P   +   + 
Sbjct: 61  IFWVLSRMRSDNELIALQTHGISLKRLVIPFLLIGIIFSGFAYLLNDYLVPAASTKANEA 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQS 191
            A+         L+EN+F +      I + + + +   L+ + I +    Q      A+S
Sbjct: 121 MARFVYKQPEVTLKENVFMQDSQGRMIYVRRIDQDTKELKNVSIYEVSRGQVTLT-TAES 179

Query: 192 GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV-LKANDQNLSFL 250
             I  ++   IL+   +++          M+F +   + +      +   K+  +  S  
Sbjct: 180 AVISSNK--WILSKANIYQTDESGFLGVEMQFGTAEFEIDEDIERYLASFKSPKEKTSKE 237

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L  +            +      ++ +  + P++  L+ +  +    L  +   +   F+
Sbjct: 238 LRDDIEAFKNTGINTSSLEVALQEKYSMSIAPLVIVLLGVPVSLMFNLQSKSWSVILTFL 297

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            + I  G     S +  +   NP   P +    F I  + +  +
Sbjct: 298 LVVIYQGSGAWLSGMGKENLINPSLAPWIPNITFSILGVIIYSL 341


>gi|329894348|ref|ZP_08270218.1| putative permease [gamma proteobacterium IMCC3088]
 gi|328923144|gb|EGG30467.1| putative permease [gamma proteobacterium IMCC3088]
          Length = 372

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 129/365 (35%), Gaps = 26/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I  +     L +  + +  Q ++R+  V+    +   L  I  + IP+ L 
Sbjct: 2   LIVRYLTRDILVNTSAVSLVVFLVVFSSQFVRRLADVAEGDLAAGFLASIMFFSIPSYLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +     L  +  ++E++++  +G     L++ VL    +++I        + 
Sbjct: 62  LILPLGFFVGLMLALGRLYTDSEMVVLSASGIGPWHLLRWVLVSGAVVAILSAGLSLGLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVDS-- 178
           P  ++ +  L  +A      +      F R               +   L+G+F+ +   
Sbjct: 122 PWTKTKVLNLVTEASNEKGLAAFVPGRFQRRSGGFDTFYAESVESDQQGLKGLFVAEQGM 181

Query: 179 RDTQTH--KIYYAQSGSIDL----DRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQT 230
                    I YA+ G +        + + L +G  ++  P   +  + +F+     L  
Sbjct: 182 SSAGEPLVTITYAERGRVVSSQEHGGRYLELLNGRRYQGQPGQLEYRVTEFEVLGERLPD 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +  S       D   + +L  + N+ +          +  H RL+  L P     ++ 
Sbjct: 242 ADSAGSAFGDDLYDALPTQMLFLDNNSAST---------ATLHWRLSLVLMPFN---LAF 289

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISS 348
           +A       R+R +   +  ++ +      G + +     +      +  L+  +  I  
Sbjct: 290 LALGLARTDRRRGRYTMLLPAIVLYLVYLVGLASLRGAAAEGASVGSLWGLHAVIAGIGC 349

Query: 349 IFLLM 353
           + LL 
Sbjct: 350 VVLLW 354


>gi|325103111|ref|YP_004272765.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
 gi|324971959|gb|ADY50943.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
          Length = 476

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 104/256 (40%), Gaps = 9/256 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L I++   + F ++   ++F+  ++ + + I+ +        ++L++ GY   T 
Sbjct: 1   MKKIHLLIVKAFIKPFFVTFFIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLLGYAAATN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+  +   LSI  FI  + 
Sbjct: 61  VAMALPLAVLLSSIMTFGNLGENYELVAIKSAGISLQRAMAPLFIMVTGLSIAAFIFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + P     +  L    +       +EE +F        I++ + + +  TL+ + I D +
Sbjct: 121 MLPVANLKMGSLLYDVRNQKAAFLIEEGVFNNSIPGYSIRVEQKDKDGKTLKDVVIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDIS-IMKFKSYTLQ--TE 231
           + +    +  A +G +          ++L  G  + +S   +  +   +   Y      +
Sbjct: 181 KGSGNTNVLMADTGEMYKTDDEKYLVLVLKHGVRYEESAGQRTYNPRERLVRYKFDETMQ 240

Query: 232 SANSSTIVLKANDQNL 247
             + S+   K  D+NL
Sbjct: 241 KFDLSSFNFKREDENL 256



 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +++  Y  E++++ T  +  ++   I    A   A++R+     P+ +S+ I F ++   
Sbjct: 359 KVITRYIIEYNRKFTLSVSCLVLFFIG---APLGAIIRKGGLGLPVVVSV-IFFLIYHII 414

Query: 323 SYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
           S I  K+ ++    P+  +++ +F ++ + L +  K
Sbjct: 415 STIGEKMARDGTISPLLGMWIAIFVLTPLGLFLTYK 450


>gi|320155252|ref|YP_004187631.1| putative permease [Vibrio vulnificus MO6-24/O]
 gi|319930564|gb|ADV85428.1| predicted permease [Vibrio vulnificus MO6-24/O]
          Length = 366

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 126/357 (35%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    Q +  +   S      ++++ I    +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFVLFLVFLSQQFISVLADASDGDIPASLIMSIVALNMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+++++ TG     LI+  L+LA++ S     +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEIVVMNATGIGNKFLIQAALYLAVITSGVAAFNSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P     ++QL+ +     +   L++  F    D   +       +  L  +F+     RD
Sbjct: 122 PWSMDRVEQLTEQVAAENSVDLLKKGQFQFTPDRSSVVFIDDIKDKQLSNVFVAQLMPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + +A  G +      RQ I +  G  +   P   +  I +F+ Y       +   
Sbjct: 182 SILPSVMFANGGEVKELSDGRQIISMKQGTRYEGVPTRVEYMITEFEQYDGLIGQRSVKQ 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                +      L+ NP+P             ++E   R++     +   L++++     
Sbjct: 242 RGRDWDAIPTLELIGNPDPE-----------AQAELQWRVSL-FVCI--PLLTMLVIPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           A+  ++ +   +  ++ I    F   S     +E+     +    PI  L L     
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLSISATKSALEEGDISASIGMWPINGLLLLVAIM 344


>gi|89075941|ref|ZP_01162316.1| putative permease [Photobacterium sp. SKA34]
 gi|89048382|gb|EAR53960.1| putative permease [Photobacterium sp. SKA34]
          Length = 366

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 131/363 (36%), Gaps = 21/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S L     +  +    + +  +   +  +   +++L   G  IP++  
Sbjct: 2   IIVRYLTRETLKSQLAVLFVLFLVFISQKFISILADATDGSIPSDLILTFMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LAI+      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNAFWVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNN-TLQGIFIVD--S 178
           P  +  I+QL  + +   T + L +  F +  +    I I         L  +F+    +
Sbjct: 122 PWSQEHIEQLKEETKAGPTLNMLVKGTFQQAPNGSGVIFIDNITDKGSRLHKVFVAQLKA 181

Query: 179 RDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            DT    +  A +G++      RQ + LNDG  +   P   + SI  F  Y         
Sbjct: 182 TDTLQPSVMVADNGTVKELSDGRQMLELNDGARYEGIPTQLNYSITHFNDYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                    Q    L+           +     ++E   R +  +F +   L+ ++    
Sbjct: 242 KAGDRDWEAQPTMTLI----------KDKSLAAKAELQWRFSL-VFCI--PLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            A+  ++ +   +  ++ I    F   S     IE +     ++ ++   I+++ + +  
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAIE-DGIIPSVIGMWPINITTLLVALAL 347

Query: 356 KKY 358
             +
Sbjct: 348 NSW 350


>gi|325578600|ref|ZP_08148700.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
 gi|325159836|gb|EGC71966.1| inner membrane protein YjgP [Haemophilus parainfluenzae ATCC 33392]
          Length = 363

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 120/356 (33%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++  L L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++ ++        N +  +++   +   
Sbjct: 122 PWAIQKQAAIVEDAKANPTMGALTSGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAKG 181

Query: 183 --THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L +      + +  D  I  F  Y        ++T
Sbjct: 182 QTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGHQETNT 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +   LL           +     ++E H R+T  L   +  LI++     + 
Sbjct: 242 ESDEAAELSFEQLL----------KDKSSAAKAELHWRITLILAVPLMALIAVP--MSKV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGGAGKLDAGLLMPLVNIAFLILGIVL 345


>gi|259907066|ref|YP_002647422.1| Putative permease [Erwinia pyrifoliae Ep1/96]
 gi|224962688|emb|CAX54143.1| Putative permease [Erwinia pyrifoliae Ep1/96]
 gi|283476866|emb|CAY72714.1| Inner membrane protein yjgP [Erwinia pyrifoliae DSM 12163]
          Length = 366

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 120/337 (35%), Gaps = 22/337 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT   +F+   R   
Sbjct: 122 PWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGNTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  AQ G +       Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+ +       
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
             RQ +      +S+  +  ++  F  +   +  +  
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSMRSSGS 321


>gi|126439084|ref|YP_001058064.1| hypothetical protein BURPS668_1014 [Burkholderia pseudomallei 668]
 gi|126218577|gb|ABN82083.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 365

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 134/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K + +   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSSDQAKVQNVFVTTTEH 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  ++E+      +    L++ +  I ++   + 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMERGKIAFGLGLIGLHVIVAGIVALLFWLR 347

Query: 355 KKKYT 359
            +   
Sbjct: 348 VRNRP 352


>gi|300718541|ref|YP_003743344.1| permease [Erwinia billingiae Eb661]
 gi|299064377|emb|CAX61497.1| putative permease [Erwinia billingiae Eb661]
          Length = 366

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 123/358 (34%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  +I   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTAIVAAVNVAWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + L    F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQSEVTQNAKANPGAAALAAGQFQQSGDGQSVMFIENVKGNNFGNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +         + L+ G     + + +D  I  F++Y       +   
Sbjct: 182 NARPSVVLADKGHMTQGPDGSQIVTLDKGTRFEGTAMLRDFRITDFENYQAIVGHQDVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   +   L   +             +RSEFH RLT     ++  L+ +       
Sbjct: 242 DPNDAEQMDFKTLAQSDKP----------EFRSEFHWRLTLVFSVLVMALMVVP--LSVV 289

Query: 298 LVRQRKKIH--PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +   P  +   I F +         K   +P     +++       + +L+
Sbjct: 290 NPRQGRVLSMLPAMLLYLIFFLLQSSLRSSGQKARLDPALW--MWVVNLSYLGLAVLL 345


>gi|219871563|ref|YP_002475938.1| permease [Haemophilus parasuis SH0165]
 gi|219691767|gb|ACL32990.1| permease, inner membrane protein yjgP [Haemophilus parasuis SH0165]
          Length = 366

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 123/356 (34%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ ++   S     +++L + G  +PT+  
Sbjct: 2   ILSRYLTKEIFKSQIAILFILLVIFFCQQLVRVLSSAVSGKVPTDLVLSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L      +E+ ++   G  +  L+K  LFL+I  +     +   + 
Sbjct: 62  LMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P   +   ++ A+A+    F+ L    F        + I     +NT+  I++   + + 
Sbjct: 122 PWAINKQSEMLAEAKANPRFAALAAGQFMS-AGGYVLFIDNI-KDNTINDIYVFQPEQQK 179

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+SG +       Q + L +   +  +P + D  I  F +Y       +  +
Sbjct: 180 KNKPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQDVDS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   LL+          E     ++E   RL   L   +  L+++       
Sbjct: 240 DEKLVQRADFQKLLS----------ETSPEAQAELQWRLALILSVPLMALLAVP--MSSV 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S              ++ +       +  L+
Sbjct: 288 NPRQGRFAKLLPALLLYLIYFLLQSSLKSAGASGKLNVSLLMPMVSVAFLVLGTLL 343


>gi|149378264|ref|ZP_01895976.1| predicted Permease [Marinobacter algicola DG893]
 gi|149357461|gb|EDM45971.1| predicted Permease [Marinobacter algicola DG893]
          Length = 352

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 137/361 (37%), Gaps = 31/361 (8%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
            L     ++ +    + ++ +   ++   + ++L +I  Y  P  L ++ P  F +    
Sbjct: 1   MLAVSGILLLVFMSGRFIKYLADAAAGELAGDVLFQIMAYRFPGFLELILPLGFFIGILL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               M   +E+ ++   G S   L+   L  +I + + +      + P     ++ +  +
Sbjct: 61  AYGRMYLESEMTVLFACGVSDKQLLMKTLLGSIPVMLVVGAMSLYVSPWGMKKVEGIFNE 120

Query: 136 AQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVD-SRDTQTHKIYYAQSG 192
            + A  F  L    F  L            + +   L+G+FI + S D +   I  A+ G
Sbjct: 121 QRQATEFEMLAPGRFQSLSSGERVTYTEALSEDKRRLEGVFIAEHSEDGKGLTIITAREG 180

Query: 193 SIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           S  +D +     ++L DG      P      +  F++Y L+  S ++    L+      +
Sbjct: 181 SQFIDEETGSRFLVLEDGARFEGLPGQLAYDVTGFEAYGLKIRSGSAGEKELEEGLATSA 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            + + +P            +R+  H R T  L   I  L+++     R   RQ +  H +
Sbjct: 241 LMASDDPE-----------HRAMLHWRFTLPLIVPIVTLLAV--RLSRVNPRQGRFFHLL 287

Query: 309 FISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLF-LFCISSIFL-----LMIKKKYT 359
              L   +  + G   +        + P +I +L++  LF +  ++L      + +++  
Sbjct: 288 PAMLV--YITYLGLLIVARDALEGGKVPEWIGLLWVHGLFLVLGLWLQFGPAWLYRRRLL 345

Query: 360 K 360
           +
Sbjct: 346 R 346


>gi|254427836|ref|ZP_05041543.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
 gi|196194005|gb|EDX88964.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
          Length = 372

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 137/364 (37%), Gaps = 24/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R +  + ++    +V +    + ++ +   ++   + + L  +  + +P  L 
Sbjct: 6   ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGEIAADALFLVMAFRMPEFLQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +    VL  M+ + E++++   G     +++ ++   ++ +  + +    + 
Sbjct: 66  MIVPLSLYIALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATTLVGMFSLYVT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           P+  + + ++  + +       L    F      D          N     L+ +F+ D+
Sbjct: 126 PRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVADA 185

Query: 179 R-----DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           R     +       +A+SG + ++     ++L DG  ++  P   D   + FK   ++  
Sbjct: 186 RFESQGEAGRLLTVWAKSGKLVVEEGISYLLLTDGFQYQGKPGQLDYKEVGFKEARVRIG 245

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              + +   K   ++   L++   +N        +   +E   RL+  L   I  L +I 
Sbjct: 246 GEKTDSRPPKVRGRSTQELVDQRADN--------KAALAELQWRLSLILTVPIMALAAIP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSY---IIHKIEQNPYYIPILYLFLFCISS 348
            A  R   RQ +    I   L     V         I       P+Y+ ++++ L   + 
Sbjct: 298 LA--RVNPRQGRFYRLIPAVLGYMLYVGMLLVCRSAIEDHKGSLPWYLSMVWIHLSAGAV 355

Query: 349 IFLL 352
           +FLL
Sbjct: 356 VFLL 359


>gi|260655096|ref|ZP_05860584.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630207|gb|EEX48401.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 339

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 123/332 (37%), Gaps = 11/332 (3%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + +  +L+     SL +  ++  Y +P V+ +  P    +       +M+ N+E++ +  
Sbjct: 13  LFKLADLIIERGVSLAVAGRLFVYELPGVVVLTLPMSCLLGALLGFGAMSTNSEVVALKA 72

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G S   +  PV+F A+++SI   I    + P  +   + +            +++ +F 
Sbjct: 73  SGISFWRMNWPVIFWAVIISILSLILNETLVPLGQRAAENVMTFEVAKQKPVLIKQEVFL 132

Query: 152 RLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR 210
           +      + + K +P + ++  + + +    +  +I  A +G          L DG+V+ 
Sbjct: 133 QAPGGRVVYVGKLDPSSGSMSNVIVQELASGKLTRITVAPNGQWVSG--IWYLTDGDVYE 190

Query: 211 KSPISKDISIMKF--KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                    +  F  +   +       +   +K +D + S L          + + +   
Sbjct: 191 MKEPDGVAHLFHFAKQELPISLTPRQIANTSVKPDDLSASDLYRYIAAMKM-QGKDISAL 249

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
             +FH +L      VI  LI        +  R   +      S+ I F  +   S     
Sbjct: 250 WVKFHFKLAVPWACVILSLIGTSLGV--SHQRHGNRSVGFGQSILIVFLYYVLMSVGKSL 307

Query: 329 IEQN---PYYIPILYLFLFCISSIFLLMIKKK 357
            + N   P     L   +F ++++FL+    +
Sbjct: 308 GQTNALPPVVAGWLPNIIFLVAAVFLIRRADR 339


>gi|330448737|ref|ZP_08312384.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492928|dbj|GAA06881.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 366

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 125/357 (35%), Gaps = 21/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S +     +  +    + ++ +   S  +   ++++ + G  IP++  
Sbjct: 2   IIVRYLTRETLKSQIAVLFVLFLVFISQKFIRILADASDGSIPSDLIMTLMGLSIPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LAI+      ++   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKLLLQSALALAIITGSIAAVNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVDSRD 180
           P  +  ++Q+  KA+     + L +  F +  D    + +       + L  +FI   + 
Sbjct: 122 PWSQDHVEQVMEKAKAGPGLNMLVKGTFQQTPDGKGVVFVDDITEKGSKLSKVFIAQLKA 181

Query: 181 TQT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           T+T    +  A  G I      RQ + LNDG  +   P   + SI  F +Y         
Sbjct: 182 TETLQPSVMVADRGLITEQPDGRQMLELNDGTRYEGIPTQLNYSITHFNNYQALIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                         L+           E     ++E   R +  +  +   L+ ++    
Sbjct: 242 KQGNRDWEALPTLDLM----------KESNLAAKAELQWRFSL-ILCI--PLLVMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            A+  ++ +   +  ++ I    F   S     IE       I ++        + L
Sbjct: 289 SAVNPRQGRFAKLAPAVLIYLAYFLAISSAKSAIEDGIIPSGIGMWPINIATLLVAL 345


>gi|167032002|ref|YP_001667233.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
 gi|166858490|gb|ABY96897.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
          Length = 371

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 116/318 (36%), Gaps = 23/318 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P  
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSLAPLG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++Q+ ++      F  L    F  L D        + + +   L G+FI + R    
Sbjct: 125 VAQVQQIISQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKRFNQD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   I  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 185 KTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +      S L+           +     R+E   R++  +   +  L+++    
Sbjct: 245 VAEEVTEREAIPTSELI----------GKKGLRERAELQWRISLPILVFVVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISL 312
            R   RQ + +  +   L
Sbjct: 293 SRVNPRQGRFLKLLPAIL 310


>gi|75907859|ref|YP_322155.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
 gi|75701584|gb|ABA21260.1| permease YjgP/YjgQ [Anabaena variabilis ATCC 29413]
          Length = 391

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 135/374 (36%), Gaps = 24/374 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +  +FL        I   +  + + +  V  S   ++I +++    +P  
Sbjct: 19  TIMDRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNF 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    + ++  +EL+ +   G S   ++   + L+ +++   F+    
Sbjct: 79  IVLAFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQ 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPN 167
           I P           KA  +      ++N+F+    D+                  +++  
Sbjct: 139 IAPAANYQATLTLDKALKSDKPKLKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFD-G 197

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++G+ I+D      ++I  A+S   +  +      +G ++  +P     +I++F+   
Sbjct: 198 KQMKGLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQ 257

Query: 228 LQTESANSS--TIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L+      S         + N++  L+  N        + +        ++       V+
Sbjct: 258 LKLPRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVV 317

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLF 342
           F    +V A    + ++  K     IS+ + F  +    +I   + Q   + P +  +L 
Sbjct: 318 F---GLVGAAMGTIPQRTGKGTSFGISVIVIFSYYLLG-FITGALGQAGVFSPFIGAWLP 373

Query: 343 LFCISSIFLLMIKK 356
            F    + + ++ +
Sbjct: 374 NFIGLGVGIFLLVR 387


>gi|194336947|ref|YP_002018741.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309424|gb|ACF44124.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 441

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 6/234 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    SFL + + I+F+  +       +           ++++       +
Sbjct: 1   MKIIDRYILKAHVGSFLFAFVTIIFVLILQFFATFADRFMGKGIGFTAMVELILLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +       S+   +E+ +   +G S   L+ PVL   +LLS+F+    N+
Sbjct: 61  VGLAAPMAVLVSVVMAFGSLTTTSEMTVFRASGISLYRLMMPVLLAGLLLSLFVERFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P+     K L      +     L EN F  L D   I +   +  +  L+GI I D+ 
Sbjct: 121 VLPEANYYAKSLMVDIARSKPAFGLAENAFSTLVDGYSIFVRSTDEHSKELRGIVIYDAS 180

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILN--DGEVHR-KSPISKDISIMKFKSYTL 228
            +    +  A+ G+ID   D   +++   +GE+H+ + P  K    M F+ +  
Sbjct: 181 RSDYKTMVTAEKGTIDFSGDDHYLVMTLFNGEIHQVRQPDHKSYRNMSFQKHRF 234



 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+    N      +   Y + +HK+    L   +F L+    A    L R+        I
Sbjct: 328 LDGELKNIEANRNMYNRYMAAYHKKYALSLACFVFVLVG---APLGVLARRGGFGVGAAI 384

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           SL   F ++W       KI +     P++ ++L
Sbjct: 385 SL-FLFVLYWMLMISGEKIAERGILDPMISMWL 416


>gi|85060086|ref|YP_455788.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
 gi|84780606|dbj|BAE75383.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
          Length = 366

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 137/368 (37%), Gaps = 27/368 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IITRYLVRETFKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    M     L+ M   +E+ ++   G  +  LI+  L L+++ +I   ++   + 
Sbjct: 62  LILPLSLFMGLLMTLSRMYTESEITVMHACGLGKSILIRAALLLSLITAILAVVNVVWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F   ++   +       +   + +F+   +   
Sbjct: 122 PWSSRHQDLVMSEAKANPSMAALVEGQFKPAENGNSVLFVGNVKDKGFEHVFLAQLKPNG 181

Query: 183 T--HKIYYAQSGSI--DLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +    D   +++ D G  +  + + +D  I  F  Y         + 
Sbjct: 182 NARPSVVIADRGHMSQRPDGSQLVMLDKGTRYEGTALLRDFRITDFTQYQAVIGRRAVAV 241

Query: 238 IVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               A   +L  L   P P             R+E H R T  +  +I  ++ +      
Sbjct: 242 DGTDAEQMSLRQLWRSPEPE-----------ARAELHWRFTLVVSVLIMAMMVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+L+++L  ++ + L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPMLWMWLTNVAYLALAL 343

Query: 354 IKKKYTKI 361
           +   +  +
Sbjct: 344 VLNLWDSV 351


>gi|150021419|ref|YP_001306773.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
 gi|149793940|gb|ABR31388.1| permease YjgP/YjgQ family protein [Thermosipho melanesiensis BI429]
          Length = 1096

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 121/357 (33%), Gaps = 7/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YIL+     F+M     V  A V  + Q  +++      +  L ++  Y +P  
Sbjct: 1   MRVLTKYILKLSIGPFIMGVAAFVLFASVELLYQLSDIIVRHRVGILKLFELIYYNLPYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P         VL+ +  + E+  +   G     L+ P   L++L  +F F   + 
Sbjct: 61  VSMGIPVGVLFSIFWVLSQLYSSKEITAMLVHGIPSRKLVYPFFLLSVLFGLFAFYLNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P       +  +K         + EN+  ++D+  Y  + +Y+  +  L  + +    
Sbjct: 121 MVPTFNHKAMKTISKYVYKRPEISIRENVLTKIDESQYFFVKRYDQSSGILYDVVLFQHI 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                +I  A+   +  D     L +G+++           + F   +L  +    S   
Sbjct: 181 Q-GEERIITAEK--VQKDEGKWFLINGKMYVTDKDGFLKFDVNFSKISLDLKDDLESLMR 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +     D     L N               +  E H R    + P I  ++ +  +    
Sbjct: 238 VGKSPRDMTGDELKN-KIKTFRKLGVDPSPWIVELHGRYANSVGPFIITILGVPLSLLFG 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           L  +   +   F  + +  G     S +  +   NP         +F    +FL ++
Sbjct: 297 LKSKSWSVIFTFAIVILYQGSGAWISAMGKENLLNPVLAAWFPNLVFISVGLFLFLM 353


>gi|325136763|gb|EGC59363.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
 gi|325208502|gb|ADZ03954.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           NZ-05/33]
          Length = 396

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 27  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 86

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 87  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 146

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 147 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 206

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 207 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 266

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 267 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 313

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 314 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 373

Query: 355 KKKYT 359
            +   
Sbjct: 374 VRSMP 378


>gi|292486865|ref|YP_003529735.1| inner membrane protein YjgP [Erwinia amylovora CFBP1430]
 gi|292900738|ref|YP_003540107.1| permease [Erwinia amylovora ATCC 49946]
 gi|291200586|emb|CBJ47717.1| putative permease [Erwinia amylovora ATCC 49946]
 gi|291552282|emb|CBA19319.1| Inner membrane protein yjgP [Erwinia amylovora CFBP1430]
          Length = 366

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 121/336 (36%), Gaps = 22/336 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT + +F+   R   
Sbjct: 122 PWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+ +       
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
             RQ +      +S+  +  ++  F  +   +  + 
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSSG 320


>gi|330873094|gb|EGH07243.1| hypothetical protein PSYMP_02391 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 375

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 131/359 (36%), Gaps = 31/359 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A+L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAVLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIV------D 177
            +   QL  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 AAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSND 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALPKPE 244

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S  +        S L  NP P +            +E   R++  L   I  L++I   
Sbjct: 245 ISEEITDREAIPTSELFGNPAPRS-----------VAELQWRISLPLSVFIVTLMAIP-- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
             R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ +  I+L
Sbjct: 292 LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYL 345


>gi|187734829|ref|YP_001876941.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424881|gb|ACD04160.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 363

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 132/365 (36%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPT 59
           MK  + YI R +     +  + +  +  +  + + +  L+  +   ++I+L+    +IP 
Sbjct: 1   MKILDRYIARQLLGVTALGVMALSALLLLGNLFKELRPLLVENKAPISIVLEFIFQVIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P+ F      V   +  + EL  +  +G S   L  P + + I LS   +    
Sbjct: 61  SLMFSIPWGFLTAVLLVYGRLASDNELTSMRMSGMSLWRLSAPAIAIGIALSGLCYWINI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+ + +I +L  KA        L E       D+L I I K   +  + G+ I    
Sbjct: 121 DIAPRAKQSISELLIKAASINPKGLLNEGQAITKFDNLEIYIDKRVDD-VIHGMHIYQKA 179

Query: 180 DTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSP-----ISKDISI-MKFKSYTLQTES 232
           D ++  +   ++  ++D   +  IL    +H  +P         IS  +      L    
Sbjct: 180 DDKSPSVAMHSERVTMDFSPEKKIL---TLHLINPLITTQEEGSISQSVTMDEMPLSINL 236

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             S +  +KAN      +            +    + +E  +R +  L  ++F LI +  
Sbjct: 237 DKSRSRRIKANRFTNREIREALDTPGYLDKKQTTEFATELPRRASFSLACIVFALIGVPL 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           A      R++       + + I+   F    +     + +     IL      I+    L
Sbjct: 297 AI---NTRRKDTSTGFALGILIASLYFLALIFADLSRKNDTMLPYILLWLPNIITVAVAL 353

Query: 353 MIKKK 357
            + K+
Sbjct: 354 HLHKR 358


>gi|17231561|ref|NP_488109.1| hypothetical protein alr4069 [Nostoc sp. PCC 7120]
 gi|17133204|dbj|BAB75768.1| alr4069 [Nostoc sp. PCC 7120]
          Length = 371

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 137/371 (36%), Gaps = 24/371 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           + Y+   +  +FL        I   +  + + +  V  S   ++I +++    +P  + +
Sbjct: 2   DRYLTSELLPTFLFGVGAFSSIGVTIDAVFELVRRVVESGLPVSIAVQVFLLKLPNFIVL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + T    + ++  +EL+ +   G S   ++   + L+ +++   F+    I P
Sbjct: 62  AFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVMTAVMLSFVVTGLTFLFNEQIAP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNNTL 170
                      KA  +   ++ ++N+F+    D+                  +++    +
Sbjct: 122 AANYQATLTLDKALKSDKPTFKQQNIFYPEYRDIQEKDGTKNRILTRLFYADQFD-GKRM 180

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +G+ I+D      ++I  A+S   +  +      +G ++  +P     +I++F+   L+ 
Sbjct: 181 KGLTIIDRSTDGLNQIVVAESAEWNGAQSIWDFYNGTIYLVAPDRSYRNILRFEKQQLKL 240

Query: 231 ESANSS--TIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                S         + N++  L+  N        + +        ++       V+F  
Sbjct: 241 PRTPLSLAEQSRDYGEMNIAQALDQLNIERLGGDRQKIRKLEVRIQQKFALPFVCVVF-- 298

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFC 345
             +V A    + ++  K     IS+ + F  +    +I   + Q   + P +  +L  F 
Sbjct: 299 -GLVGAAMGTIPQRTGKGTSFGISVIVIFSYYLLG-FITGALGQAGIFSPFIGAWLPNFI 356

Query: 346 ISSIFLLMIKK 356
              + + ++ +
Sbjct: 357 GLGVGIFLLVR 367


>gi|56751017|ref|YP_171718.1| hypothetical protein syc1008_d [Synechococcus elongatus PCC 6301]
 gi|81299323|ref|YP_399531.1| hypothetical protein Synpcc7942_0512 [Synechococcus elongatus PCC
           7942]
 gi|56685976|dbj|BAD79198.1| hypothetical protein YCF84 [Synechococcus elongatus PCC 6301]
 gi|81168204|gb|ABB56544.1| conserved hypothetical protein YCF84 [Synechococcus elongatus PCC
           7942]
          Length = 394

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 124/372 (33%), Gaps = 16/372 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YILR +   FL        +   +  + + +  V+ +   L++  ++    +P 
Sbjct: 27  ISIMDRYILREMLGPFLFGVGAFTSVGLSIGVVFELVRQVTEAGLPLSVAAQVFLLKMPD 86

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L +  P    +        ++ ++EL+ + + G S    I P + ++I+++   F    
Sbjct: 87  FLVLAFPMSMLLSALMAYNRLSSDSELIALRSCGISSYRFILPGILMSIVVTGMTFAFYE 146

Query: 120 IIEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLY-----IKISKYNPNNTLQGI 173
            + P      +  L             + N+ ++  D        I  ++      ++G+
Sbjct: 147 SVVPAANFQAQVTLQTALNQTRPQLEEKNNIVYQQFDRKTSELARIFYARRYDGEQMRGL 206

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            I+D    +  +I  A++G      Q     +G ++  +P      I  FKS        
Sbjct: 207 TILDFTRGELSQIISAETGVWHPGDQLWEFRNGTIYGVAPDGSYSGIATFKSQEFTIPET 266

Query: 234 NSSTIVLKANDQNL-----SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
             S      ++  +        L       N     +  +     ++L      V FGLI
Sbjct: 267 PLSIASQSRDETQMNATQIWQYLRVLRQTNNTAD--IRKWEVRLQQKLALPFVCVAFGLI 324

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              A+   A  ++  +     IS+ I F  +                  +   F + +  
Sbjct: 325 G--ASLGTAPNQRTGRATGFGISVLIIFSYYLLAFVTGALGINGTLPTLLAGWFPWLLGM 382

Query: 349 IFLLMIKKKYTK 360
              L + ++  +
Sbjct: 383 GVGLYLLRQTAR 394


>gi|307154796|ref|YP_003890180.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
 gi|306985024|gb|ADN16905.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
          Length = 388

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 131/368 (35%), Gaps = 22/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           S + Y+   +   FL        +   +  +   +  V+ S  S++I L+I    +P  +
Sbjct: 18  SVDSYVFMELFIPFLFGMGLFTSLGIAIGTLFDIVRKVTESGLSISIALQILMLKMPEFV 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + +  ++EL+   + G S   L+ P L L+++++   F   + +
Sbjct: 78  VLAFPMSILLATLMGYSRLASDSELIAFRSIGISPYRLLVPSLILSLMVTGTTFFFSDYV 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNPNN 168
            P+     K + A A        +E+N+ +     +                  K++   
Sbjct: 138 APQATQQAKSILADALKQDKPLQVEDNIIYPEYKKITQDNGRDQTILTRLFYAEKFD-GQ 196

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +QG+ I+D      ++I  +QS   ++D+ +    +G ++  +P     +I++F+   L
Sbjct: 197 QMQGLTILDRSQPGVNQIVTSQSAIWNVDQNSWDFYNGTIYLIAPDGSYRNIVRFEHQQL 256

Query: 229 QTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYR-PELLETYRSEFHKRLTQWLFPVIF 285
               A       K    D +++            +  +          ++       ++F
Sbjct: 257 DLPRAPLDIAKRKQNPADMSIAEAKEYLKIVKLSKNDQRARKVEVRIQEKYALPFVCIVF 316

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K     Q       F    +    ++  S+I   +       P +  +L  
Sbjct: 317 GLIGSAIGLKP----QNTNKATSFGVCIVLIFSYYLLSFITSSMGIWGIVTPTVSAWLPN 372

Query: 346 ISSIFLLM 353
           I  +   M
Sbjct: 373 ILGLLAAM 380


>gi|116690487|ref|YP_836110.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|170733808|ref|YP_001765755.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
 gi|116648576|gb|ABK09217.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|169817050|gb|ACA91633.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
          Length = 364

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 139/366 (37%), Gaps = 24/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +Q+G  +  +     ++L DG  +  +P   +  IM+F+ Y ++  S   + 
Sbjct: 182 GKV-NVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +      L NP  +N            +EF  R    L  +   ++ I       
Sbjct: 241 VQTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLM 353
             R+ + I+ + +++ I        + +  +IEQ        +  L++ +  I +    +
Sbjct: 288 NPRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWL 346

Query: 354 IKKKYT 359
             +   
Sbjct: 347 RVRNRP 352


>gi|330994316|ref|ZP_08318244.1| putative permease [Gluconacetobacter sp. SXCC-1]
 gi|329758783|gb|EGG75299.1| putative permease [Gluconacetobacter sp. SXCC-1]
          Length = 410

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 134/367 (36%), Gaps = 17/367 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y+LR +   F ++   ++    + ++L   NL++++  S+     +   LIP  L
Sbjct: 17  TTMDRYLLRQVVPPFSIALGVVMAALLLERLLVLFNLLAANGSSMKTFFALLSDLIPHYL 76

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +   +V+  M+ N E+  +  +G S   + +P +    +     F     I
Sbjct: 77  GLALPAAMCVSVFSVIRRMSANHEIDALMASGVSIFRICQPFVLTGAIFGFLAFSLYGFI 136

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
           +P  R   +     A  A    +L+  +F  L DD+ +     +   + +  +FI D  D
Sbjct: 137 QPYARYDYRSAFYFASHAGWTPHLQSKMFA-LSDDIVLTAENVDHAGSRMWNVFIRDGTD 195

Query: 181 TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS- 235
               +   AQ G +    D     + L DG V   S      +I  F   T    +    
Sbjct: 196 KAHVRFISAQKGYLFNPADGSNIRLDLVDGTVITDSQDKP-PTITSFSRTTRMISTKGKL 254

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELL---ETYRSEFHKRLTQWLFPVIFGLISIVA 292
            T   +   +    L  P                   +E + RL +        +++   
Sbjct: 255 DTEAYRKRGETERELTVPELYYGIRYGNPTISHSYMIAELNFRLARTAAIPFIPILACAL 314

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
           A     VR+R+K +P     +I+   F     +      N +  P+L  +L     S I 
Sbjct: 315 AG----VRKRQKNNPGLAIAAITLVGFDHTLQMGMSFVANMHMSPLLVIWLPTLVFSLIC 370

Query: 351 LLMIKKK 357
           + ++ ++
Sbjct: 371 VGVLIRQ 377


>gi|119511693|ref|ZP_01630798.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
 gi|119463678|gb|EAW44610.1| hypothetical protein N9414_06074 [Nodularia spumigena CCY9414]
          Length = 371

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 129/356 (36%), Gaps = 22/356 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           + Y  + +   FL        +   +  + + +  +  S   ++I +++     P  + +
Sbjct: 2   DRYFTKELVAPFLFGVGAFSSLGVTIDAVFELVRKIVESGLPISIAIQVFLLKFPNFIVL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + T    + ++  +EL+ +   G S   ++   + L+++++   FI    I P
Sbjct: 62  AFPMSTLLATLMTYSRLSGESELIAMRGCGVSVYRMVLTAVMLSLVVTGITFIFNEQIAP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNNTL 170
                      KA  +   ++ + N+F+    D+                  +++    +
Sbjct: 122 AANYQATVTLEKALKSDRPTFQQSNIFYPEYRDVEQPDGSRNRILARLFYADQFD-GKQM 180

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +G+ I+D      ++I  ++S   +         +G V+  +P S   +I++F+   LQ 
Sbjct: 181 KGLTIIDRTTEGLNQIVVSESAQWNASDNVWDFYNGTVYLVAPDSSYRNILRFEHQQLQL 240

Query: 231 ESANSS--TIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                +       + + N+   L            + +   +    ++ +     V+FGL
Sbjct: 241 PRTPLNLVERRRDSGEMNIRESLEQLEIQRIGGDRKEIRKLQVRIQQKFSLPFVCVVFGL 300

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +      +    ++  +     +S+ + F  +  F +I   + Q     P +  +L
Sbjct: 301 VGSAMGSRP---QRSGRGTSFGVSVIVIFTYYLIF-FISGAMGQAGVLSPFMGAWL 352


>gi|170079022|ref|YP_001735660.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
 gi|169886691|gb|ACB00405.1| permease, YjgP/YjgQ family protein [Synechococcus sp. PCC 7002]
          Length = 373

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 138/353 (39%), Gaps = 15/353 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +  +F         +   V  +   +  V  S    ++ LK+    +P 
Sbjct: 8   LAVLDRYIIGELNLAFAFGLGLFSALGIAVGSLFDLLAQVRESRLLFDVALKVMALKMPE 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    + T  V + ++ ++E++ + + G S   L+ P L  +IL +   F+ ++
Sbjct: 68  FIGFALPMAVLLATLIVYSRLSGDSEIIALRSLGISVYRLVLPALIFSILATAITFVFKD 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-----DLYIKISKYNPNNTLQGIF 174
            + P   +   Q   +A L     + +E + +               ++++    ++ + 
Sbjct: 128 QVIPLANAQATQTLEQAFLQKQAPFRDEKIIYPEYGEDNVLKRLFYAAEFD-GQQMKDLT 186

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SA 233
           I+D  +   ++I  A +   DL R      +G ++         ++++F  + +Q     
Sbjct: 187 IIDRSNGSLNQIVTADAAGWDLARNQWNFQNGIIYFIDIDGSYRNVLRFDRHQIQLSNEL 246

Query: 234 NSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                + K  D +L+ L   +     +P+     L   R  F ++++   FP I   + +
Sbjct: 247 RVDEELPKHEDMSLAQLQQYMQTVAADPDRDEAWLRKLRVRFQEKIS---FPFICLALGV 303

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           V A      +   K     + + + FG ++  +++I  +    Y  PIL  +L
Sbjct: 304 VGAAIGLRPQSAGKATGFGLCVGLIFGYYF-LAFMISSVGVAGYLHPILAAWL 355


>gi|240127075|ref|ZP_04739736.1| hypothetical protein NgonS_00198 [Neisseria gonorrhoeae SK-93-1035]
 gi|268685430|ref|ZP_06152292.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268625714|gb|EEZ58114.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 371

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 146/365 (40%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  ++  +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLDRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTCYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|255533443|ref|YP_003093815.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
 gi|255346427|gb|ACU05753.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
          Length = 480

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L +++   R F ++   ++FI  ++ + + ++ +        ++L++  Y     
Sbjct: 1   MKKIHLLLVKAFIRPFFVTFFIVMFILLMLFLFKYVDDLIGKGFEWYVILELMYYASAAN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  N EL+ I + G S    + P+L L I L+I  F+    
Sbjct: 61  VSMALPLSILLSSIMTFGTLGENYELVAIKSAGVSLQKAMMPLLVLIIFLAISSFLFSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-S 178
           + PK       L    +       ++E +F        I++ K   +   L  + I D +
Sbjct: 121 MLPKANLKFGSLLWDIRNKKLSFLIKEGVFNNSIPGYSIRVDKKGSDGISLHNVMIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKD 217
            +    KI  A+SG +  +   ++  L+DG  + +S     
Sbjct: 181 SNNGIAKIIIAKSGKMSKNDDYLLLTLHDGVRYEESNGKSS 221


>gi|268594204|ref|ZP_06128371.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268595873|ref|ZP_06130040.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|293399673|ref|ZP_06643825.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
 gi|268547593|gb|EEZ43011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549661|gb|EEZ44680.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|291609924|gb|EFF39047.1| hypothetical protein NGNG_01868 [Neisseria gonorrhoeae F62]
          Length = 384

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 135 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 255 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|59801587|ref|YP_208299.1| hypothetical protein NGO1228 [Neisseria gonorrhoeae FA 1090]
 gi|194097861|ref|YP_002000906.1| hypothetical protein NGK_0281 [Neisseria gonorrhoeae NCCP11945]
 gi|239998342|ref|ZP_04718266.1| hypothetical protein Ngon3_02533 [Neisseria gonorrhoeae 35/02]
 gi|240014487|ref|ZP_04721400.1| hypothetical protein NgonD_07553 [Neisseria gonorrhoeae DGI18]
 gi|240016933|ref|ZP_04723473.1| hypothetical protein NgonFA_07151 [Neisseria gonorrhoeae FA6140]
 gi|240079727|ref|ZP_04724270.1| hypothetical protein NgonF_00199 [Neisseria gonorrhoeae FA19]
 gi|240117144|ref|ZP_04731206.1| hypothetical protein NgonPID_01570 [Neisseria gonorrhoeae PID1]
 gi|240121009|ref|ZP_04733971.1| hypothetical protein NgonPI_04421 [Neisseria gonorrhoeae PID24-1]
 gi|268602832|ref|ZP_06136999.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|59718482|gb|AAW89887.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933151|gb|ACF28975.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268586963|gb|EEZ51639.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|317163631|gb|ADV07172.1| hypothetical protein NGTW08_0198 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 371

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|226940338|ref|YP_002795412.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
 gi|226715265|gb|ACO74403.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
          Length = 363

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 121/362 (33%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   ++R +          ++ I  V Q+++  +  +S     + ++ +  +       
Sbjct: 2   IFYRSVIRELTAVAFAVFSVLLAIMVVTQVVKLFDKAASGALPADAIVALIAFSTLGYFG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +    VLT + R+ E+ +   +G S    I+PVL  A+ L++ +      + 
Sbjct: 62  TLLSITLFISVIVVLTRIWRDHEMAVWLTSGLSPNRWIRPVLAFAVPLTLLIATVSLFLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSRD 180
           P       + +   +     S +   +F    D   +   +       +   +F+    +
Sbjct: 122 PWAARKGSEYTDILRQQDEISAVAPGVFKESRDGSKVYFVENYSGEAGSATNLFVRSI-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + +A+ G +  +      + L DG  +     + D  +++F+ Y ++      +T
Sbjct: 181 NGKTSLVFAREGIVRTEPNGERYLYLTDGRRYEGEAGAADWKVVEFRKYKVKINQNIRTT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  +      S L   N  +           R+E   R++  +  +I  L  +       
Sbjct: 241 VDTRTKSVPSSMLWLANTPDA----------RAELAWRVSLPIASLILAL--LAIPLSYY 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R  +  + +                     +       +++L L  +    LLM+ ++
Sbjct: 289 NPRSGQTFNLLIAIFVYQLYYNLMGVVQSWISKGELSVWSMVWLHLTMLGLFVLLMVMRR 348

Query: 358 YT 359
             
Sbjct: 349 KP 350


>gi|254786690|ref|YP_003074119.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
 gi|237683657|gb|ACR10921.1| permease, YjgP/YjgQ family [Teredinibacter turnerae T7901]
          Length = 378

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 146/377 (38%), Gaps = 34/377 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S     L ++ I    + +  +   ++      +LL +  Y +P  L 
Sbjct: 2   IIFRYLAREVLSSMFAVSLVLLMIIISARFVNYLAEAAAGKLDAGVLLTLMAYRLPAYLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++   G S+  L+   L  ++++++ + +    + 
Sbjct: 62  LILPLGLFIGILMAYGRLYLDSEMTVLSACGLSQKRLVGYTLAASLVVAMLVGLFSLYLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPN-NTLQGIFI----- 175
           P+     + L A+ +    F  L+ + F  LD           + +   L+G+F+     
Sbjct: 122 PQGVKASEALLAEQRNRTDFETLKPSRFHTLDQGAGTSYAESISEDKKQLRGVFMAKVSP 181

Query: 176 ---VDSRDTQTH-----KIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKF 223
               D  D  TH      +  A+SG   +D Q+    ++L +G  +  +P +++  +++F
Sbjct: 182 IDPADDLDKVTHQEADLTVLTAESGETVIDPQSGQKYLLLKNGRRYVGTPGTQNYQVVEF 241

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            +++      + +    +  D   +F L                  +    R +  +  +
Sbjct: 242 GNFSQLLPEPDYAVKPKRFTDGLTTFKLLQAK---------TREASAALQWRFSMPVLVM 292

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLF 342
           I   + ++A        ++ +   +  ++ +        +     IE+    +P +L+L 
Sbjct: 293 I---VGLLAVPLSKTQPRQGRYAKMLPAIILYMVYLVCVNAARGLIEKGNEPVPGMLWLV 349

Query: 343 --LFCISSIFLLMIKKK 357
             LF   ++FLL+ K++
Sbjct: 350 HLLFFTVALFLLVDKRR 366


>gi|107023405|ref|YP_621732.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
 gi|105893594|gb|ABF76759.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
          Length = 364

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 139/366 (37%), Gaps = 24/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTASAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +Q+G  +  +     ++L DG  +  +P   +  IM+F+ Y ++  S   + 
Sbjct: 182 GKV-NVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +      L NP  +N            +EF  R    L  +   ++ I       
Sbjct: 241 VQTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLM 353
             R+ + I+ + +++ I        + +  +IEQ        +  L++ +  I +    +
Sbjct: 288 NPRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWL 346

Query: 354 IKKKYT 359
             +   
Sbjct: 347 RVRNRP 352


>gi|301156462|emb|CBW15933.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 363

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 120/356 (33%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 2   ILTRYLTKEVFKSQIAILFILLLIFFSQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L++  L L++  +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVRVALILSLFTAGLAAYNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   T   L    F    ++ ++        N +  +++   +   
Sbjct: 122 PWAIQKQAAIVEDAKANPTMGALASGQFMSTSNNNFVLFIDKINGNQISDVYLFQMKAKG 181

Query: 183 --THKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L +      + +  D  I  F  Y        +++
Sbjct: 182 QTKPSVVTAEKGELKALPNGDQVLNLQNTLRVEGTSVLPDFRITHFDDYQAYLGHQETNS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A + +   LL           +     ++E H R+T  L   +  LI++     + 
Sbjct: 242 ESDEAAELSFEQLL----------KDKSAAAKAELHWRITLILAVPLMALIAVP--MSKV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S+             ++ L       + +++
Sbjct: 290 NPRQGRFAKILPALLLYLIYFLLQSSFKSAGGADKLDAGLLMPLVNIAFLILGIVL 345


>gi|307543948|ref|YP_003896427.1| permease [Halomonas elongata DSM 2581]
 gi|307215972|emb|CBV41242.1| K07091 [Halomonas elongata DSM 2581]
          Length = 361

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 134/368 (36%), Gaps = 22/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I ++       ++ +    + ++  +  +     ++IL  +  + +P  L 
Sbjct: 2   IIFRYLTREILQTMAAVAGVLLLVIMGSRFIRYFSNAAEGEIPVDILGTLMLFHLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +     L  +  N+E+ ++   GTS   L+   L  A +++I + +    + 
Sbjct: 62  LILPLAFFLGILLALGQLYLNSEITVLVACGTSPNRLLWVSLLPATVVAILVGLCSLWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD--SR 179
           P      + +  +    L F  L    F              +     L+G+FI +   R
Sbjct: 122 PAGALQNEIILDEQSSQLDFGVLAPGRFQNFGGGRVAYTEALSEQERRLEGVFISERQRR 181

Query: 180 DTQTHKIYY--AQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D  T +     A  G   +D +     ++L+DGE +   P       + F +Y ++   A
Sbjct: 182 DDGTPQTVVTRAAEGYQTIDEETGSRFLVLSDGERYSVEPGRAVAEHLSFGTYAVRLSRA 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +    L   +   +  L  + + P           ++   RL     P++F +++++A 
Sbjct: 242 AAERDDLDDPEYATTPALFADGSAPAM---------AQLQWRLGLP--PMVF-ILTLLAM 289

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
               +  ++ +   +  ++ +           +  I +  +   + ++        I LL
Sbjct: 290 PLSRVNPRQGRFAKLLPAIFLYVAYLSLLLAALDAIARGAWPTTLGMWPIHAAFLVIGLL 349

Query: 353 MIKKKYTK 360
           M  +   K
Sbjct: 350 MTLRAQRK 357


>gi|213968383|ref|ZP_03396527.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|213927021|gb|EEB60572.1| membrane protein [Pseudomonas syringae pv. tomato T1]
          Length = 378

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 31/359 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 8   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 67

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 68  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSLAPQG 127

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIV------D 177
            +   QL  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 128 AAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSND 187

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 188 KSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALPKPE 247

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S  +        S L  NP P +            +E   R++  L   I  L++I   
Sbjct: 248 ISEEITDREAIPTSELFGNPAPRS-----------VAELQWRISLPLSVFIVTLMAIP-- 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
             R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ +  I+L
Sbjct: 295 LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYL 348


>gi|254242519|ref|ZP_04935841.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195897|gb|EAZ59960.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 372

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 133/360 (36%), Gaps = 25/360 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L ++ 
Sbjct: 5   RYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSR---- 179
            +    L  K      F  L    F  + D   +    + + +   L GIFI        
Sbjct: 125 INQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSS 184

Query: 180 -DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   I  A+ G+ ++       +IL++G  +  +P   +   +++ +Y +      +
Sbjct: 185 NQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEA 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S+ V + +    + L   +             Y++E   RL+  L   +  L+++     
Sbjct: 245 SSEVSERDAVPTADLFGSDNP----------RYQAELQWRLSTPLLVFVVTLLAVP--LS 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
           R   RQ + +  +  ++ +  G       +  ++++   P  I + ++    ++   LL 
Sbjct: 293 RVNPRQGRFLK-LLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLF 351


>gi|28868483|ref|NP_791102.1| hypothetical protein PSPTO_1272 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384649|ref|ZP_07233067.1| hypothetical protein PsyrptM_18512 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058898|ref|ZP_07250439.1| hypothetical protein PsyrptK_02842 [Pseudomonas syringae pv. tomato
           K40]
 gi|302133011|ref|ZP_07259001.1| hypothetical protein PsyrptN_16554 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851721|gb|AAO54797.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|330963184|gb|EGH63444.1| hypothetical protein PSYAC_00750 [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015232|gb|EGH95288.1| hypothetical protein PLA106_04717 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 375

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 31/359 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIV------D 177
            +   QL  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 AAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSND 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALPKPE 244

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S  +        S L  NP P +            +E   R++  L   I  L++I   
Sbjct: 245 ISEEITDREAIPTSELFGNPAPRS-----------VAELQWRISLPLSVFIVTLMAIP-- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
             R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ +  I+L
Sbjct: 292 LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYL 345


>gi|323140935|ref|ZP_08075848.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
 gi|322414673|gb|EFY05479.1| permease, YjgP/YjgQ family [Phascolarctobacterium sp. YIT 12067]
          Length = 363

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 122/367 (33%), Gaps = 17/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL-VSSSTESLNILLKISGYLIPT 59
           ++  + Y+L+ +   F+        I     +L +I   ++     L  + ++  Y +P 
Sbjct: 3   LRLLDRYVLKELLYPFVFGIAAFSSIFIASTMLFKITQYMTKYGAPLETVARLFMYNLPE 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    +        ++ ++E+  +   G S   ++ PVL +   +S+F  +   
Sbjct: 63  VINYTFPMSMLLAALMAFGKLSGSSEITAMKAGGVSYYRIVAPVLVVGFFVSMFSMVWAE 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPN-NTLQGIFI 175
            + P  ++    +  +     T    + ++  +            +K++     +  I I
Sbjct: 123 KVVPTSKAKASIILNEEIRHNTRPTTQNHIIIKTISGDTQRVTYANKFDEKLGKMTDITI 182

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESA 233
            +    +  +I  A+ G  +     I+  DG V          S  KFK     L     
Sbjct: 183 EEFNKGKIARIQTAKEGYWENGSWRIV--DGNVFALDDKDGVQSSAKFKEQIIPLNFSPK 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             S    +  +  +  L     +    +         E   R+   L    F +I    A
Sbjct: 241 QISWEQKEPEEMTIREL-REYISMLEEQHTSAARQWCEIFMRINIPLASFFFAMIG---A 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIF 350
                 ++      + IS+ + F +++        + +     P+L   L    C+    
Sbjct: 297 CLGTQKQRTSSSIGLGISIIVIF-IYYAIMTFTTGLGKGGAMPPLLACALPNILCLGVGV 355

Query: 351 LLMIKKK 357
            LM KK 
Sbjct: 356 YLMKKKN 362


>gi|119476403|ref|ZP_01616754.1| predicted Permease [marine gamma proteobacterium HTCC2143]
 gi|119450267|gb|EAW31502.1| predicted Permease [marine gamma proteobacterium HTCC2143]
          Length = 374

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 128/371 (34%), Gaps = 26/371 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I  S       ++ I    + ++ +   ++   S +ILL I  Y +P+ L 
Sbjct: 2   ILFRYLAKEILISLFAVSATLLVIVMSGRFVKYLAQAAAGKLSPDILLNIMVYRLPSFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M   +E+ ++   G S   L    L  +I +++ +        
Sbjct: 62  LVLPLSLFIAILLAYGRMYVESEMTVMAACGLSDRRLAVYTLVPSICVAVVVGYLSLYAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNPN-NTLQGIFIVDSR- 179
           P     ++++    Q +     L E  F           +   + +   +Q +F  +   
Sbjct: 122 PIGIGKVQEIFEDTQNSSGLELLIEGRFRVDEQSGRVTYVESLDNDVGIMQDVFSAEQSL 181

Query: 180 ---DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYT-LQTE 231
                +   + +A+ G+I +        ++L +G      P      I +F  Y  L  +
Sbjct: 182 GSEGEEQLTVIFAEQGNIQMSDDQQSRYLVLRNGYQSVGQPGGLRYRISQFDEYGQLVRD 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            A   T+  +A+ +    LLN            L   ++    R++     ++  +I+++
Sbjct: 242 PAVQKTLYKRADARTTEQLLN----------STLLEDKATLQWRMS---LVILVPVIALI 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI--EQNPYYIPILYLFLFCISSI 349
           A        +R +   +  +  I        +     I  E+    + + ++ L  +   
Sbjct: 289 AQALSRTSHRRGRYVKMLPAFIIYITYLVALNAARDAIGKEKISSDLGMWWVHLVFLGLG 348

Query: 350 FLLMIKKKYTK 360
             L+    + +
Sbjct: 349 ITLLFGGDWLR 359


>gi|224368912|ref|YP_002603074.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223691629|gb|ACN14912.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 359

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 150/372 (40%), Gaps = 31/372 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y L+   R F +  + ++ I   +  L  +     S  SL   L      IP +
Sbjct: 1   MSILHRYWLKEFTRFFAIVQMLLLCIFLAVDYLSNMEKFLRSNFSLIQGLGYILLKIPFM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
               TP    + T  V + MNRN ELL +  +G S   L+KPV+ + ++L++ +      
Sbjct: 61  FVQFTPAGVVLATIVVFSLMNRNNELLALKGSGVSVYHLLKPVVLVGVILAMTMIFLGET 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVD- 177
           I P   +    + +   +         EN++ R D +  I I+ +NP +N++ GI I   
Sbjct: 121 IVPYTMAKANHIRSSTLKKNKKIYATWENIWIR-DGNKIIHINYFNPADNSISGITITSF 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             D +      A++G  D  +  +  +L           + DI     K++ L  E A+ 
Sbjct: 180 GADFKIATRVDAENGRFDSGQWQLSNVLEQNN--PGDEHNADIQFYDHKAFALDVEPADL 237

Query: 236 STIVLKANDQNLSFLLN--PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            T+  K +  ++  L        N  Y       Y  +F  ++    FP+I  ++++V A
Sbjct: 238 KTVAKKTDQMSIQELKAYIHKIENEGYDA---THYIVDFWAKIA---FPIICLVMALVGA 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILY---------LFL 343
               L   ++ +      L I+ G+   F Y ++H    +  Y  ++          L  
Sbjct: 292 GAGMLSAAKENM-----PLGIALGIGVAFCYWVVHGFCTSLGYGGMIPPFLSAWTADLIF 346

Query: 344 FCISSIFLLMIK 355
            C+++IFL+ + 
Sbjct: 347 ICLTTIFLVTVN 358


>gi|15599023|ref|NP_252517.1| hypothetical protein PA3828 [Pseudomonas aeruginosa PAO1]
 gi|116051856|ref|YP_789301.1| hypothetical protein PA14_14500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889888|ref|YP_002438752.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254236732|ref|ZP_04930055.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387656|ref|ZP_06877131.1| putative permease [Pseudomonas aeruginosa PAb1]
 gi|313109247|ref|ZP_07795215.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
           39016]
 gi|9950003|gb|AAG07215.1|AE004800_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587077|gb|ABJ13092.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168663|gb|EAZ54174.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770111|emb|CAW25873.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|310881717|gb|EFQ40311.1| hypothetical protein PA39016_001710056 [Pseudomonas aeruginosa
           39016]
          Length = 372

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 133/360 (36%), Gaps = 25/360 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L ++ 
Sbjct: 5   RYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSR---- 179
            +    L  K      F  L    F  + D   +    + + +   L GIFI        
Sbjct: 125 INQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSS 184

Query: 180 -DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   I  A+ G+ ++       +IL++G  +  +P   +   +++ +Y +      +
Sbjct: 185 NQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEA 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S+ V + +    + L   +             Y++E   RL+  L   +  L+++     
Sbjct: 245 SSEVSERDAVPTADLFGSDNP----------RYQAELQWRLSTPLLVFVVTLLAVP--LS 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
           R   RQ + +  +  ++ +  G       +  ++++   P  I + ++    ++   LL 
Sbjct: 293 RVNPRQGRFLK-LLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLF 351


>gi|310766279|gb|ADP11229.1| Putative permease [Erwinia sp. Ejp617]
          Length = 366

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 120/337 (35%), Gaps = 22/337 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    +T   +F+   R   
Sbjct: 122 PWSSRYQNEVMQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGSTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  AQ G +       Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAQQGHMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+ +       
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
             RQ +      +S+  +  ++  F  +   +  +  
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSSGS 321


>gi|268683689|ref|ZP_06150551.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268623973|gb|EEZ56373.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 384

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 135 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 255 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|261392198|emb|CAX49712.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
          Length = 371

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ I  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWIIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|15677420|ref|NP_274576.1| hypothetical protein NMB1570 [Neisseria meningitidis MC58]
 gi|304387021|ref|ZP_07369276.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|7226817|gb|AAF41923.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304338893|gb|EFM04992.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|316983818|gb|EFV62798.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325140780|gb|EGC63294.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
 gi|325199831|gb|ADY95286.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
          Length = 371

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|240122360|ref|ZP_04735316.1| hypothetical protein NgonP_00185 [Neisseria gonorrhoeae PID332]
 gi|240125094|ref|ZP_04737980.1| hypothetical protein NgonSK_02547 [Neisseria gonorrhoeae SK-92-679]
 gi|254494457|ref|ZP_05107628.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268680947|ref|ZP_06147809.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|226513497|gb|EEH62842.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268621231|gb|EEZ53631.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 371

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRNREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|149186433|ref|ZP_01864746.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830022|gb|EDL48460.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 409

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 138/368 (37%), Gaps = 25/368 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI R +    +   +    +  + ++L+ ++ V+     + ++ K+   L+P    +
Sbjct: 8   IDRYIARLVIVPMVGVFVLAASLLVLDKMLRLLDFVAVEGGPVGVVFKMLATLLPEYASL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +   +EL +    G S   L++    +  +L          I+P
Sbjct: 68  AIPLGLLLGILLAFRKLATTSELDVFRAVGMSYGRLLRVPFLITGVLMTLNVALVFFIQP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQ 182
             R T ++L  + +     + ++   F  L D + ++I +   +   L+GIF   + D  
Sbjct: 128 VSRFTYERLEYELRSGALGASIKVGEFTTLADRMALRIEESEDDGRQLKGIFARVANDKG 187

Query: 183 THKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                 A+ G+      D D   + L +G + +    S+   ++ F  + L  +      
Sbjct: 188 QVLSISAKEGNFLATTDDPDTIILRLTEGTIVQ-DTGSQTPRVLTFTRHDLPIDLPAIEE 246

Query: 238 IVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +     +  L  LL     + N      +  ++ F+ RL +    V+  L+ ++A  
Sbjct: 247 FRARGEDEREYILPELLRIGWAD-NQTESKRDASQASFNFRLVE---VVMMALMPLLAVA 302

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI------LYLFLFCISS 348
                ++      +F+S+     +     + +++  ++   I +      L++  F  ++
Sbjct: 303 LGIPPKRSTSALGVFLSI-----IMVVAYHKVNQYGEDLAAIGMFDPILALWVPFFLFAA 357

Query: 349 IFLLMIKK 356
           + L M  +
Sbjct: 358 LILWMYYR 365


>gi|257468007|ref|ZP_05632103.1| hypothetical protein FulcA4_01647 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062293|ref|ZP_07926778.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687969|gb|EFS24804.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 358

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 129/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YIL  +    L       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   + + G     ++KP+  LA   ++F+F  +  
Sbjct: 61  LSQTIPMGIFLGVMLTFSKFTRTSEATAMSSIGMDLRGIVKPIFILACATTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVD-S 178
           I P+  S ++ ++ K         L+E  F    ++  + I +    +   QG+ I   +
Sbjct: 121 IIPRSFSKLQYITTKIAYENPVFQLKEKTFIDEVEEYNLYIDRIEGKDRVAQGVLIFQKN 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
            D +   +   +         ++++ D + +      K+    +F      L        
Sbjct: 181 EDVEFPTVLVGKEAYWK--DSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLDAYFDGID 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      ++S LL    + P         Y+ E +++L   L  +   ++S++     
Sbjct: 239 IKVKDIEAMSISMLLKEMKDLPQNEKIP---YKVEINRKLALPLSTI---MLSLLGVFIS 292

Query: 297 ALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  K     +SL + F    F     ++    + P ++ +    +      F    
Sbjct: 293 IGHHRSGKGANFALSLVVIFSYITFLNIGMVMANRGKIPPFVGVWTPNIILFLVTFYFYK 352

Query: 355 KKKY 358
           KK  
Sbjct: 353 KKSR 356


>gi|121635227|ref|YP_975472.1| hypothetical protein NMC1490 [Neisseria meningitidis FAM18]
 gi|254805325|ref|YP_003083546.1| putative permease [Neisseria meningitidis alpha14]
 gi|120866933|emb|CAM10693.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis FAM18]
 gi|254668867|emb|CBA06967.1| putative permease [Neisseria meningitidis alpha14]
 gi|254669825|emb|CBA04193.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672903|emb|CBA07222.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325138630|gb|EGC61189.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           ES14902]
 gi|325142745|gb|EGC65120.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           961-5945]
 gi|325198680|gb|ADY94136.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
          Length = 371

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|161870424|ref|YP_001599597.1| hypothetical protein NMCC_1472 [Neisseria meningitidis 053442]
 gi|161595977|gb|ABX73637.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 432

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 63  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 122

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 123 LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 182

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 183 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 242

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 243 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 302

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 303 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 349

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 350 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 409

Query: 355 KKKYT 359
            +   
Sbjct: 410 VRSMP 414


>gi|152973138|ref|YP_001338284.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892750|ref|YP_002917484.1| putative transport system transmembrane component [Klebsiella
           pneumoniae NTUH-K2044]
 gi|262045294|ref|ZP_06018319.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|290512174|ref|ZP_06551541.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
 gi|330016471|ref|ZP_08308444.1| lipopolysaccharide export system permease protein LptF [Klebsiella
           sp. MS 92-3]
 gi|150957987|gb|ABR80017.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545066|dbj|BAH61417.1| putative transport system transmembrane component [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|259037350|gb|EEW38596.1| inner membrane protein YjgP [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|289775169|gb|EFD83170.1| transmembrane protein yjgP [Klebsiella sp. 1_1_55]
 gi|328528832|gb|EGF55775.1| lipopolysaccharide export system permease protein LptF [Klebsiella
           sp. MS 92-3]
          Length = 365

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F +Y         S 
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVSA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+ +       
Sbjct: 242 DPDDTEQMDMRTLW----------KTHTDRARAELHWRFTLVATVFIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   I+ N       P ++++   +    L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALAVL 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|304396396|ref|ZP_07378277.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
 gi|304355905|gb|EFM20271.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
          Length = 366

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 135/364 (37%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMILMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + +    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQDEVTQNAKANPGAAAMAAGQFQTSGDGSAVLFVENVKGNNFGNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG ++      Q + L+ G     + + +D  I  F +Y        ++ 
Sbjct: 182 NARPSVVLADSGHLEQRKDGSQVVTLDKGTRFEGTALLRDFRITDFTNYQAIVGYKAATL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +LS L+     +          +++E H RLT     ++  L+ +       
Sbjct: 242 DPNDSEQASLSDLVANKTPD----------FQAELHWRLTLVFAVLVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   ++ +       P L++++  IS + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLKSSGAKGRLDPALWMWVVNISYLVLAVL 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|288937433|ref|YP_003441492.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|288892142|gb|ADC60460.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
          Length = 365

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 126/364 (34%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F +Y         ++
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVTS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+ +       
Sbjct: 242 DPDDTEQMDMRTLWQ----------THTDRARAELHWRFTLVATVFIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   I+ N       P ++++   +    L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALAVL 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|121534980|ref|ZP_01666798.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306393|gb|EAX47317.1| permease YjgP/YjgQ family protein [Thermosinus carboxydivorans
           Nor1]
          Length = 361

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 126/368 (34%), Gaps = 22/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+ +   F+        +      + +    ++    S+  + K+  Y +P 
Sbjct: 1   MRILDKYILKEMLGPFIFGIAAFSSVFIGTSTLFRLARYITEYGASVYSVTKLFIYSLPG 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +      ++ ++E+  + + G S   L  PV   A ++SI   I   
Sbjct: 61  IIVLTFPMSMLLASLLAFGRLSASSEITAMKSGGLSFFRLAAPVFIAAFVVSIVAVILNE 120

Query: 120 IIEPKCRSTIKQLSA--------KAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTL 170
            + P+  +  + +          K Q  +    +++    RL         K++   N +
Sbjct: 121 AVVPRANNAYQNVLRYEIEKSRPKTQEHIVIKDVKDGEIERLT-----YARKFDEAANAM 175

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
             + + +    +  ++  A+    D  R   I+  G ++  +P  +    ++F    +  
Sbjct: 176 YAVTVQEFDKGRLVRVENAEKAIWDNGR--WIMESGIIYDVAPEGQLQRTLRFDKQFMPV 233

Query: 231 ESANSSTIV--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           E +         K  +  +  L            +   TY  E H+RL      ++F LI
Sbjct: 234 EKSPREIAREQKKPEEMTIKELKQHIKVLQREYVKT-STYEVELHQRLAIPAASLVFALI 292

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                 +         +    I + I + +   F+ +          +   ++       
Sbjct: 293 GTPLGLQPHRSSSSIGLGISIIIIFIYYTIMTVFTALGQGGA--IPAVLAAWIPNIVFII 350

Query: 349 IFLLMIKK 356
           I   +I+K
Sbjct: 351 IGAFLIRK 358


>gi|253583477|ref|ZP_04860675.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834049|gb|EES62612.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 358

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 130/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YIL  +    L       FI  +  I+  +  +     S+  +++I  + +P +
Sbjct: 1   MKIIEKYILEEVKMPILFGISLFTFIFLIDIIVAMMENIIVKGISIIDIMRILSFYLPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R +E   + + G     ++KP+  LA + ++F+F  +  
Sbjct: 61  LSQTIPMGIFLGVMLTFSKFTRTSESTAMSSIGMDLREIVKPIFILACITTLFIFFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+  + ++ ++ K         L+E  F    D+  + I +    +   QG+ I    
Sbjct: 121 IIPRSFTKLQYITTKIAYENPVFQLKEKTFIDEVDEYNLYIDRIEGKDRIAQGVLIFQKD 180

Query: 180 -DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            D +   +   +         ++++ D + +      K+    +F    +   +      
Sbjct: 181 EDVEFPTVLVGKEAYWK--DSSMVITDSKFYDFDKDGKEKLRGEFDDKKVPLTAYFDGID 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      ++S L+      P         Y+ E +++L   L  +   ++S++     
Sbjct: 239 IKVKDIEAMSISMLMKEMKELPKNEKIP---YKVEINRKLALPLSTI---MLSLLGVFIS 292

Query: 297 ALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +  K     +SL++ F    F     ++    + P +I +    +      F    
Sbjct: 293 IGHHRSGKGANFALSLAVIFSYITFLNIGMVMANRGKVPPFIGVWTPNIILFLVTFYFYK 352

Query: 355 KKKY 358
           KK  
Sbjct: 353 KKSR 356


>gi|110833357|ref|YP_692216.1| hypothetical protein ABO_0496 [Alcanivorax borkumensis SK2]
 gi|110646468|emb|CAL15944.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 368

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 139/371 (37%), Gaps = 28/371 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R +  + ++    +V +    + ++ +   ++   + + L  +  + +P  L 
Sbjct: 2   ILHRYINRQVFMTTVLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRMPEFLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +    VL  M+ + E++++   G     +++ ++   ++ ++ + +    + 
Sbjct: 62  MIVPLSLYVALLLVLGRMHMDNEMVVLQAGGQGNGRVVRSLVVPILMATMLVGMFSLYVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           P+  + + ++  + +       L    F      D          N     L+ +F+ D+
Sbjct: 122 PRGDAEVNRIFEEQKDRSVLELLTPGRFHVKGSSDSQRATYAEHLNREKGVLENVFVADA 181

Query: 179 R-----DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           R             +A+SG + ++     ++L DG  ++  P   D   + FK   ++  
Sbjct: 182 RFESQGGAGRLLTVWAKSGKLVVEDGISYLLLTDGLQYQGKPGQLDYKEVGFKEARVRIG 241

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              + +   K   ++   L+    +N        +   +E   R++  L   I  L +I 
Sbjct: 242 GEKTDSRPPKVRGRSTQELMEQQADN--------KEALAELQWRISLILTVPIMALAAIP 293

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCI 346
            A  R   RQ +    I   L      + G   +     ++     P+Y+ ++++ +   
Sbjct: 294 LA--RVNPRQGRFYRLIPAVLGYML--YVGMLLVCRSAIEDHKGVLPWYLSMVWIHVSAG 349

Query: 347 SSIFLLMIKKK 357
             +FLL    +
Sbjct: 350 LVVFLLYFGAR 360


>gi|301058944|ref|ZP_07199913.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446940|gb|EFK10736.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 358

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 120/332 (36%), Gaps = 21/332 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI+R I +  +  C  ++ I       + +          + ++ +    I   L 
Sbjct: 2   IIDRYIMREISKPAMTICTVLMGIFGSYIATRYLEDAVQGQLPGSTVILLVLLRIAISLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +           N E+  +   G S + ++KPV+ LA+   + +      I 
Sbjct: 62  VLLPTTLYLSVMIAFGRFYMNAEMTGMSACGISMVRVLKPVMLLAVTAGMIVACFSLYIR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P   +   +L   A++    + ++   F+ ++D    +   K +   +    +F+   R 
Sbjct: 122 PWAWNQFFELKTGAKVDFDITRMKGGNFYEIEDGERVLFADKVDHGKHRALHVFMQIKRH 181

Query: 181 TQTHKIYYAQSGSID----LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +   I YA+S +           ++  +G ++  S   K   I++F++  +   S N  
Sbjct: 182 GELE-IVYAESATQRFRNTTPEPVLVFQNGRLYTFSETEKTWKILQFRNLEMSLTSNNVE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  KA   +   L + +               +E   RLT     ++  L+ +     R
Sbjct: 241 PLKQKAKAFSTEQLWHSDHPEAL----------AELQWRLTAPFSTILLALLGVP--LSR 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +  RQ K        L   F V++  S I  K
Sbjct: 289 SFPRQGKYTKVPLGILV--FAVYYNLSAITKK 318


>gi|126031980|gb|ABN71556.1| putative permease [uncultured bacterium]
          Length = 402

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 136/366 (37%), Gaps = 18/366 (4%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK F   + YI R +    L   +    +  + ++L+  + V++    ++++ ++   L+
Sbjct: 1   MKLFTSVDRYIFRLVAMPMLAVFVIAASLLVLDKMLKLFDFVATEGGPVSVVFRMLANLL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P    +  P    +        +  ++EL ++   G     L++    +A+ L+    + 
Sbjct: 61  PEYASLAIPIGLMLGILFAFRKLATSSELDVMRAVGLGYGRLLRVPFIMAVGLAGVNLVI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV 176
              ++P  R   +QL  + +     + ++   F  L D + ++I +       L GIF+ 
Sbjct: 121 VGYLQPLSRYYYEQLQFELRSGALGASIKVGEFTTLKDKIALRIERSEDEGRKLMGIFVR 180

Query: 177 DSRDTQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            + D        A+ G       + D     L+DG++ + SP      ++ F  + L  +
Sbjct: 181 VADDQGQVLSVSAREGRFLALKDNPDTIVFRLSDGQIVQDSPGV-TPRVLTFSRHDLPID 239

Query: 232 SANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +     +  L  LL    N+     +     R+ F+ R+ + +   +  L+
Sbjct: 240 LPALERFRQRGGGEREYLLPELLRLGWNDEVPLTQ-RNINRANFNYRMVEVV---MMLLL 295

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCIS 347
            ++A       ++      +F+S+ +         Y           + + L+      +
Sbjct: 296 PLLAVALAVPPKRSTSALGVFVSIVMVVAYHKVNEYGQSIAALGKSGVLLALWGPFVVFA 355

Query: 348 SIFLLM 353
           ++ + M
Sbjct: 356 AMIVWM 361


>gi|311747143|ref|ZP_07720928.1| membrane protein [Algoriphagus sp. PR1]
 gi|126578851|gb|EAZ83015.1| membrane protein [Algoriphagus sp. PR1]
          Length = 604

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 104/263 (39%), Gaps = 8/263 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  IL      FL++ L + FI   + +L+  + +        I +++  Y + ++
Sbjct: 1   MKKLDKLILGSFIGPFLLTFLVVDFILLTVNMLKYFDEIFGKGLDFWIYMELISYFVISI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            PM  P    + +     ++  + EL  I ++G S I  ++ +    I+LS   ++S N 
Sbjct: 61  SPMALPLAVLLSSLMTFGNLGEHFELTAIKSSGISLIRAMRSIGVFVIVLSFAAYLSNNH 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK       L    ++      ++E +F+       IK++K   +  L+ I I D   
Sbjct: 121 LVPKVNLKTFSLLYDIRMKSPALDIKEGVFYNGIPGYSIKVNKKLDDVRLKDIIIYDHTG 180

Query: 181 -TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISI--MKFKSYTLQTESA 233
                 +  A SG +    +     + L +G  + +   S+ I+   + F     +T   
Sbjct: 181 VQGNLNVTLADSGRMETFFNDSYMRLTLYNGINYSEERQSRGIAEKPVNFSRGEFETNVI 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPN 256
             S    +  D+    L + N  
Sbjct: 241 VFSLDAFQM-DRTPEDLWSTNRA 262


>gi|238028370|ref|YP_002912601.1| permease [Burkholderia glumae BGR1]
 gi|237877564|gb|ACR29897.1| Permease, putative [Burkholderia glumae BGR1]
          Length = 363

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 140/368 (38%), Gaps = 24/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   S   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGQVSPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   R++E+++   +G S   LI+P+   +  + + +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYRDSEMVVWLASGVSLTRLIRPIGVFSTPIVLLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   +Q +F+  + +
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESTATHRVFFIEKMSPDQARVQNVFVTTT-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  +Q+G ++ ++     I+L +G  +   P   +  IM+F+ Y ++ +S    T
Sbjct: 181 QGKVNIVVSQTGRVETEKNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +   L  L +P   N            +EF  R    L  +   +++I  A    
Sbjct: 241 QPTTTSTSTLELLRDPTKENL-----------AEFAWRAGLPLIAINLMILAIPLA---Y 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLM 353
              +R +   + +++ I        + +  +IE+        + +L+L +  I +    +
Sbjct: 287 QNPRRGRTVNLVMAVLIYLTYSNLLNVVQSQIERGKLPFGVGLVVLHLVVAGIVAFLFWL 346

Query: 354 IKKKYTKI 361
             +    I
Sbjct: 347 RVRNRPLI 354


>gi|88859092|ref|ZP_01133733.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
 gi|88819318|gb|EAR29132.1| hypothetical protein PTD2_08809 [Pseudoalteromonas tunicata D2]
          Length = 348

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 124/342 (36%), Gaps = 22/342 (6%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I    + ++ +   +  +    +++ +    +P +   + P    +      + +  ++E
Sbjct: 3   IFVSEKFVRILTEATDGSLPAKLIISMLALKLPQLASFILPLSIFLGIILAYSRIYADSE 62

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +    G S   +++  L  + +L++F      ++ P       +L  KA+       L
Sbjct: 63  MTVFKACGVSEWYVVRVTLVSSFVLALFAGALTLVVAPWASEQEYRLEEKAKAESGLFSL 122

Query: 146 EENLFFRLDD-DLYIKISKYNPNNT-LQGIFIVDSRDTQTH---KIYYAQSGSID---LD 197
               F +  +    + I   N   T L  +F+    + +     +I YAQ G ++     
Sbjct: 123 RAGRFQQTGNEKAVVFIHDINQGGTELNKVFVAQFSENEKRPQARIVYAQHGIVEEGASG 182

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + L  G+ +    ISK++ + +F  Y +Q +         K    + S LL  N  +
Sbjct: 183 EQQLKLAAGKHYETDGISKELKVTEFSGYQVQIQEQAIEHQRRKLEAISSSALLQMNTAD 242

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                       ++F  RL   L  +I   ++ +A     +  ++ K   +  ++     
Sbjct: 243 AA----------AQFQWRLAIPLSILI---LTFIAVPLSEVNPRQGKFAKLVPAIVFYLI 289

Query: 318 VFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKKKY 358
            F   +     IE     + + L+        I +L+I +  
Sbjct: 290 YFILLNGAKFAIEDGQIPVGLGLWWIHLTALFIGMLLILRGR 331


>gi|269103492|ref|ZP_06156189.1| putative permease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163390|gb|EEZ41886.1| putative permease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 366

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 121/356 (33%), Gaps = 21/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S       +  +    + ++ +   +  +   +++  + G  +P++  
Sbjct: 2   IIVRYLTRETLKSQFAVLFVLFLVFISQKFIRILADATDGSIPSDLITTLMGLYMPSMAL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     L++  L LA++       +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGMGNKFLLRAALSLALITGALATFNALWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNN-TLQGIFIVDS-- 178
           P       Q+    +       L +  F    +    + ++       TL+ +F+     
Sbjct: 122 PWAAEKEAQVMESVKADSGLDLLVKGQFQAAPNGQGVVFVNDITDKGKTLKHVFVAQLKG 181

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +D+    +  A  G +      RQ + L DG  +   P   D SI  F+ Y         
Sbjct: 182 KDSIRPSVLVADHGYVSEHKDGRQILDLKDGTRYEGIPTRLDYSITDFEGYQAVIGQRKV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+                 ++EF  R++  +  +   L+++V    
Sbjct: 242 KEERRDWDAMPTLELMQ----------RAEPEAQAEFQWRMSL-ILCI--PLLTMVVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A+  ++ +   +  ++ I    F   S       ++    P++ L+   +  + +
Sbjct: 289 SAVNPRQGRFAKLVPAVLIYLAYFLAIS-AGKSALEDGTLPPMIGLWSINLVILLI 343


>gi|268315816|ref|YP_003289535.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
 gi|262333350|gb|ACY47147.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
          Length = 481

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 7/241 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK      L  +   FL     ++F+  +  +++ +  +      L ++L++  Y +  +
Sbjct: 1   MKRLHRMTLGMLPGPFLGWFGTLMFLLIMQFLIKYLPDLVGKGLPLGVILELISYNLAYM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I + G S   L  P+L + ++L+  +    N+
Sbjct: 61  VVLAVPMATLIAMIMTFGRLAESNAYQVIKSAGISLPQLTWPLLIVGLVLTGAMMYFNNL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           I P+     + L    Q       L+  +F+   +   I +   +P   +L+ + I D R
Sbjct: 121 ILPEANHRARNLWIDIQRKKPGFQLQPGVFYDGIEGYSILVQHRDPETDSLRDVTIYDYR 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSP--ISKDISIMKFKSYTLQTESA 233
           ++  H +  AQ G +          +IL DGE HR       +    + F  Y L+ + +
Sbjct: 181 NSGEHAVLKAQRGLLQPIAGGRFIDLILEDGEFHRLRRLEGQERYERLAFARYRLRLDLS 240

Query: 234 N 234
           +
Sbjct: 241 D 241



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 30/108 (27%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           + L   +     +  +     + YR E HK+ +  +  +IF LI +              
Sbjct: 340 RRLQTEIEDLQRSIQWTERRADRYRVEIHKKFSIAVACLIFVLIGMPLGLSVRRGGLGLA 399

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                      +        +  +    P+    L   +  +  + L 
Sbjct: 400 GGLALAIFLFYWITLVQGEKLADRGYLTPWIGMWLPNLVMGLLGVALF 447


>gi|291279033|ref|YP_003495868.1| hypothetical protein DEFDS_0631 [Deferribacter desulfuricans SSM1]
 gi|290753735|dbj|BAI80112.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 344

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 129/358 (36%), Gaps = 16/358 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+L+ +   FL+  LF +FI  + +I+    L+ +       + ++    IP+ 
Sbjct: 1   MRITEKYVLKELVPVFLVGNLFFIFILLIDKIVDLSELILAKNVPFFFVAELIIAYIPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +    V   ++ ++EL+ + + G  +  + KP + L  +  +   +    
Sbjct: 61  LVITIPTSTLLSALIVYGRLSDDSELVAMKSLGADKYNIFKPSILLGFISLVLALLMSLY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK      +   +    ++ +  +EN  +       +   K    N   G+ I++ +D
Sbjct: 121 LMPKGNDFAIERLMQISKYVSINDFKENELYTEIPGFVLYTDKRVDKNKFLGLIIINKKD 180

Query: 181 TQTHKIYYAQSGSI-DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              H +  A+ G I +    +++ N           +  S ++FKS+ +           
Sbjct: 181 ---HIVIQAKKGEIVNTTEGSLVFNLDNGVLIDTKGEIPSKLEFKSFVVNVPIITEKKFD 237

Query: 240 LK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           ++     ++  L+N    +           + E  KR       +I  +   V     + 
Sbjct: 238 VRNERLMSIRNLINHLNKS--------NIIKFELSKRFALPFASIIMAIFGAVV---GSF 286

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +  K   + +S+ I            + I     Y+      +  I  +  L+ + 
Sbjct: 287 FHRGGKAFGLSVSIIIVLIYNTLLLLSQNLINMLNPYLAAWVANIIFIILLVYLLRRA 344


>gi|220906932|ref|YP_002482243.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
 gi|219863543|gb|ACL43882.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
          Length = 374

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 139/373 (37%), Gaps = 21/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YIL  +   FL        +A  +  +   +  ++ +  +L + L+I G  +P 
Sbjct: 7   LAIIDRYILAEMAMPFLFGVAVFTLLAATIGVVFDLLRWLADNRLTLAVALQILGLRLPE 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +    V  ++ R +EL+ +   G S   L  P+L +  LL+   F    
Sbjct: 67  FIILALPMSMLLTPLLVFNTLGRRSELVALQGCGVSVYRLALPILLVGFLLAGLTFGLNE 126

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY----IKISKYNPNNTLQGIFI 175
            I P+      Q+   A       + E+N+F+R   D          +++    +Q I I
Sbjct: 127 TIAPQTNYQALQIQTAALRRPQQKFREKNIFYREFVDNTLSRIFYARQFD-GQQMQRITI 185

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           ++    +  +I  A +   D  ++      G V+  +P ++  S    + + +      S
Sbjct: 186 LNFDQGKLDQIIVANAAEWDQKQKHWDFQQGTVYSLTPNTESSSYTSIQPFQVTQLPLPS 245

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRP-------ELLETYRSEFHKRLTQWLFPVIFGLI 288
           + + L    + +   +N        R        + +  ++    ++       V+FGLI
Sbjct: 246 TPLQLATETRKIEQ-MNRWEATQFLRAIEQTGDQKWIRRWKVGIQEKNAFPFTCVVFGLI 304

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              AA   +   + +      +SL++ F  +   S  I   E      P+L  +L  +  
Sbjct: 305 G--AALGLSSYNRSQTSRGFGLSLAMIFAYYLLNSTCISLGE-GGLLSPLLAAWLSPLVG 361

Query: 349 I----FLLMIKKK 357
           +    +LL    +
Sbjct: 362 LLTGGWLLFRAAR 374


>gi|167835784|ref|ZP_02462667.1| hypothetical protein Bpse38_04783 [Burkholderia thailandensis
           MSMB43]
          Length = 365

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 125/333 (37%), Gaps = 18/333 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   +   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGEVNPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + I +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIVILIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQAKVQNVFVTTTEQ 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + ++    + I+L +G  +   P   +  IM+F+ Y ++ +S    + 
Sbjct: 182 GKVNVVVSQTGHTETMKNGDRFIVLENGRRYDGVPGQPNFKIMEFERYGVKIQSKQIVSQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L NP   N            +EF  R    L  +   +++I  A     
Sbjct: 242 PTTTGTSTPDLLRNPTNQNL-----------AEFAWRAGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
             +R +   + +++ I        + +  ++E+
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVVQSQMER 320


>gi|330962173|gb|EGH62433.1| hypothetical protein PMA4326_26812 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 375

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 127/358 (35%), Gaps = 29/358 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFMIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAALVGLVVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +   QL  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 AAQFSQLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSDDRSQLTGVFISEKRMSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGTALPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  V        S L                   +E   R++  L   I  L++I    
Sbjct: 245 ISEEVTDREAIPTSELF----------GNRTARSVAELQWRISLPLSVFIVTLMAIP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ + +I+L
Sbjct: 293 SRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345


>gi|47155054|emb|CAE85253.1| putative permease [Escherichia coli]
          Length = 227

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 5/221 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   + I QL  ++Q  L    L    F   D+   I     + + N L    I  + 
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TS 179

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKD 217
                +I+ A+S  +     ++  ++L++G  +      +D
Sbjct: 180 TANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRD 220


>gi|312170934|emb|CBX79193.1| Inner membrane protein yjgP [Erwinia amylovora ATCC BAA-2158]
          Length = 366

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 120/336 (35%), Gaps = 22/336 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKAAMILMLFTALLAALNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    NT + +F+   R   
Sbjct: 122 PWSARYQNEVMQNAKANPGAAALAAGQFQQSADGQSVLFIENVKGNTFRNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G +       Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVAEQGRMEQRVDGSQIVTLDSGTRFEGTALLRDFRITDFKNYQAIIGHQAVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L +    +          +RSE H RLT     +I  L+ +       
Sbjct: 242 DPNDSEQMSLDTLWHSGKPD----------FRSELHWRLTLVFSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
             RQ +      +S+  +  ++  F  +   +  + 
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSSG 320


>gi|170723397|ref|YP_001751085.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
 gi|169761400|gb|ACA74716.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
          Length = 371

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 115/318 (36%), Gaps = 23/318 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +      ++L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPSVLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P  
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGLTMAPAALVALLVAWLSLSLAPLG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++Q+  +      F  L    F  L D        +   + + L G+FI + R    
Sbjct: 125 VAQVQQIIGQQDALTEFDTLVPGRFQTLRDGSRVTYTEELTDDRSNLTGVFISEKRFNQD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   +  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 185 KTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  V +      S L+                 R+E   R++  +   I  L+++    
Sbjct: 245 VSEEVTEREAIPTSQLI----------GNAGLRERAELQWRISLPILVFIVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISL 312
            R   RQ + +  +   L
Sbjct: 293 SRVNPRQGRFLKLLPAIL 310


>gi|149907704|ref|ZP_01896451.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
 gi|149809374|gb|EDM69303.1| hypothetical protein PE36_07442 [Moritella sp. PE36]
          Length = 361

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 129/350 (36%), Gaps = 20/350 (5%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           +     +  I    Q +  ++ V +     N+++++  Y +P +  ++ P    +     
Sbjct: 5   VAVLFILSLIFVSQQFVALLSKVMTGALPANLVMEMLLYTMPALGTLILPVSLFIGILFA 64

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
              +   +E++I+   G +   ++   L L+ +    +  +  I  P       QL    
Sbjct: 65  HGRLYAESEMVILTACGYTPSRILMSSLLLSSVTIGLVAFNAFIYAPTAEEGRVQLLENV 124

Query: 137 QLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVD--SRDTQTHKIYYAQSGS 193
              +  + L++  F  LD  L  + +  Y+ + +L+ IFI    S++ +   I  A  G+
Sbjct: 125 DADVGLATLKQGRFESLDGGLAVVYVESYDSDKSLRKIFIAKSPSQEGERPSIVLADKGN 184

Query: 194 IDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
           ++ D      + L+ G  +      +D  I+ F  Y +  +  + S    K      S L
Sbjct: 185 VESDDNGSQWLKLSQGLRYEGELSQRDFRIVDFSEYRVFIQEQDVSERGRKTKALPTSEL 244

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
            N N             ++ E   R+ Q    V   L++++      +  ++ +   +F 
Sbjct: 245 WNSNE----------FEHKVELQWRIAQ---VVAIPLLTLLVVPLAMVNPRQGRYAKLFP 291

Query: 311 SLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           +L +    F   S     I ++    +   ++    +  + +      Y+
Sbjct: 292 ALLMFLTYFMLLSAARSAILDEKLPLVFGFWIVHLGVLILAIWFNLANYS 341


>gi|218885480|ref|YP_002434801.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756434|gb|ACL07333.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 379

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 111/342 (32%), Gaps = 13/342 (3%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             + + LQ   L       L   + +  YL P  + +V P    +        M+ + EL
Sbjct: 16  VLIGRGLQLRELFLGLDLGLADAVLLFVYLTPFFMLLVVPVACMLSVFLTFLRMSTDREL 75

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
           + +   G S   ++   L   +L ++              +  +        +     ++
Sbjct: 76  VALKAGGVSLYQMLAAPLLFCVLCTLLTLGISLQGLAWGMANFRATVMDIANSRARVVVQ 135

Query: 147 ENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA----I 201
             +F +    L +   + +P +N L  + + D     +     A +G+I  D        
Sbjct: 136 PGVFNKDIPGLTLFARQVDPADNRLSQVIVEDRSREDSTLTILAPTGAIATDEARGELLF 195

Query: 202 ILNDGEVHRKSPISKDISIMKFKSY----TLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            L +G +++     + +S++ F  Y     L           +K  + +   L     ++
Sbjct: 196 RLQNGRLYKTE--GQQVSVLGFGEYVVRIDLGLMFKGLDLGRVKPKELSWEQLRALPLDD 253

Query: 258 --PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
              N   +LL     E HKR       ++ GL ++  A     + ++  +    +   + 
Sbjct: 254 GKGNVDDKLLRKVAVEVHKRWVFPAACLVLGLFAMPLACAFEGLHRQFGVVLALLMFLVY 313

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           + +              P         LF  + ++ L +  +
Sbjct: 314 YSLLSFGLTTGEAGTIAPEVGLWTPNVLFLGAGLWGLRLAAR 355


>gi|254247471|ref|ZP_04940792.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
 gi|124872247|gb|EAY63963.1| hypothetical protein BCPG_02269 [Burkholderia cenocepacia PC184]
          Length = 364

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 139/366 (37%), Gaps = 24/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTTMMIRIVGYAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLVVTLFVSILFVLTRRYRDSEMVVWLASGVSLTRLIKPIGVFATPIILLITFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P      K + A+ Q     S L    F     +     I K +P+ + +Q +F+  + +
Sbjct: 122 PWSNQQSKMIRARFQQRDEISLLAPGQFRESAANHRVFFIEKMSPDQSKVQNVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +Q+G  +  +     ++L DG  +  +P   +  IM+F+ Y ++  S   + 
Sbjct: 182 GKV-NVVVSQTGHTETSKDGDRFVVLEDGRRYDGTPGQPNFKIMEFERYGVKITSKPVTN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +    +      L NP  +N            +EF  R    L  +   ++ I       
Sbjct: 241 VQTTNSTPTPDLLRNPTRDNL-----------AEFAWRAGLPLIAINLMVLGIP--LSYQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLM 353
             R+ + I+ + +++ I        + +  +IEQ        +  L++ +  I +    +
Sbjct: 288 NPRRSRTIN-LVMAVLIYLTYSNLLNVVQAQIEQGKMSFGVGLVGLHVVVAAIVAFIFWL 346

Query: 354 IKKKYT 359
             +   
Sbjct: 347 RVRNRP 352


>gi|257095656|ref|YP_003169297.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048180|gb|ACV37368.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 359

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 16/318 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R    +       +  I    Q+++ +N  +    + + +  + G+     LP
Sbjct: 2   IFQRAVRREFAHAASGIFTALFAIMVTTQLIRLLNEAAQGGVAPDAVAALLGFASLNYLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+   R++E+++  ++G      I+PVL  AI L   +      + 
Sbjct: 62  PLLSLSMFVAILLTLSRCYRDSEMVVWFSSGLPLTAWIRPVLVFAIPLVATIAALSFFLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P   S   +   K  +      +    F      D  + +     + + ++ +F+ ++++
Sbjct: 122 PWAVSQSAEYRGKLSIRKDAGEVSPGTFHESSAGDRVVFVEGIAEDTSQVRNVFVSETKE 181

Query: 181 TQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +                  + I+L DG  +  +P S ++ I+++  Y ++ E+  +  I
Sbjct: 182 GRVGVTMAVTGHQEIAANGDRFIVLQDGRRYELAPASPEVRILEYVRYAVRLETKEARGI 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                   L  LL          P  L  YR+E   RL+     V+  L++I        
Sbjct: 242 TPTPKSMPLRELL----------PVDLPAYRAELLWRLSIPCSAVVMALLAIP--LSFVN 289

Query: 299 VRQRKKIHPIFISLSISF 316
            R  +  + +   L    
Sbjct: 290 PRAGRSANMLLAILVYLI 307


>gi|291045045|ref|ZP_06570753.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011048|gb|EFE03045.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 384

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 15  IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + 
Sbjct: 75  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVI 134

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 135 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 194

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 195 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 255 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 301

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 302 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 361

Query: 355 KKKYT 359
            +   
Sbjct: 362 VRSMP 366


>gi|206577932|ref|YP_002240777.1| putative permease [Klebsiella pneumoniae 342]
 gi|206566990|gb|ACI08766.1| putative permease [Klebsiella pneumoniae 342]
          Length = 365

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 127/357 (35%), Gaps = 23/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  IP +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+       ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F +Y         ++
Sbjct: 182 NARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVTS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L               +  R+E H R T      I  L+ +       
Sbjct: 242 DPDDTEQMDMRTLWQ----------THTDRARAELHWRFTLVATVFIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
             RQ +      +S+  +  ++  F  +   I+ N     + L ++++ I+ ++  +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIKSNGGKGKMDLAIWMWAINLLYFAL 341


>gi|240116444|ref|ZP_04730506.1| hypothetical protein NgonPID1_09463 [Neisseria gonorrhoeae PID18]
 gi|260441666|ref|ZP_05795482.1| hypothetical protein NgonDG_11382 [Neisseria gonorrhoeae DGI2]
 gi|268602116|ref|ZP_06136283.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268586247|gb|EEZ50923.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 371

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I PV+  A+  +I + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWISPVMQFAVPFAILIAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGEFNNLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V      + + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTISTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|87198521|ref|YP_495778.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
 gi|87134202|gb|ABD24944.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
          Length = 414

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 137/371 (36%), Gaps = 27/371 (7%)

Query: 1   MKSF---ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           MK     + YI R +    L   +    +  + ++L+  + V++    ++++ K+   L+
Sbjct: 1   MKLLTATDRYIARLVFVPMLSVFVLAASLLILDKMLKLFDFVATQGGPVSVVFKMLANLL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P    +  P    +        +  ++EL ++   G S   L++     AI L+    + 
Sbjct: 61  PEYASLAIPLGLMLGILFAFRKLAMSSELDVMRAVGLSYTRLLRVPYMFAIALAALNLLI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIV 176
            + ++P  R   +QL  + +     + +    F  L D   +++    +    L+GIF  
Sbjct: 121 VSYLQPLSRYYYEQLQFELRSGALGASIRVGEFNSLQDRTALRVDASRDEGRDLRGIFAR 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                    +  A+ G    +R++     + L DG++ +  P      ++ F S+ L  +
Sbjct: 181 IQTANGQVMVISAREGRFFANRESPDTVILRLTDGQIVQDGPGIASPRVLSFASHDLPID 240

Query: 232 SANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +     +  L  LL    N+  Y  E+    ++  + RL +     +  + 
Sbjct: 241 LPRIEQFRQRGDADREYFLPELLQIGWND-RYSEEIRNQSKASLNYRLVE-----VVMMF 294

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP------ILYLF 342
            +        V  ++    + + LSI   V     + +++  Q+   +        L+  
Sbjct: 295 LLPLLAVALAVPPKRSTSALGVFLSIVLVV---AYHKVNQYGQDVAALGRMDPVIALWGP 351

Query: 343 LFCISSIFLLM 353
               +++ + M
Sbjct: 352 FVVFAALIVWM 362


>gi|91774577|ref|YP_544333.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
 gi|91708564|gb|ABE48492.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
          Length = 361

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 136/360 (37%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  +L+ +  + +   L +  I    ++   I + +  + + + +  + G+ +   LP
Sbjct: 2   LFKRSLLQELVTTAIGGFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +     L+  +R++E+++  + G    + I+PVL   + + + + +    + 
Sbjct: 62  MMLSLTLFLAVLLTLSRWHRDSEMVVWFSAGQGLSSWIRPVLTFGLPVIVVIALLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNP-NNTLQGIFIVDSRD 180
           P       +   + +     + +   +F      D    +  ++   N ++ IF+   + 
Sbjct: 122 PWATGKGAEFRDQLKSRDELASISPGVFKESRHADRVFFVESFDELGNIVKNIFVQSMQH 181

Query: 181 TQTHKIYYAQ--SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  A+    + +     +++ +G  +  +P + + SI +F+ Y ++ E A     
Sbjct: 182 QKLGIIVAARGHRETAENGDDFLVMQNGRRYEGTPNTAEYSITEFERYAIRIEPAEVQQQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 +N   L N +  +            +E   RL   +   +  L++I       +
Sbjct: 242 PPNTQSKNSLELFNEHSPDS----------IAELQWRLAIPISAFVLILLAI---PLSFV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKK 356
             +  +   + ++L I        S +   + Q   P  + +  +  F +   F +  ++
Sbjct: 289 DPRSGRSANLMMALLIYIVYNNLLSIMQAWLSQGKVPAMVGLWPVHAFFLLLTFWMFYRR 348


>gi|293393093|ref|ZP_06637408.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
 gi|291424239|gb|EFE97453.1| inner membrane protein YjgP [Serratia odorifera DSM 4582]
          Length = 393

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 131/356 (36%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 31  IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVDGDVPTNLVLSLLALGVPKMAQ 90

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + TLI   + LA+L S+    +   I 
Sbjct: 91  LILPLSLFLGLLMTLGRLYTESEITVMHACGLGKRTLIIAAMVLALLTSLVAAANVFWIG 150

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   S   ++ A+A+   + + L E  F    D   +        NT   +F+   R   
Sbjct: 151 PWASSHQDEVIAEAKANPSIAGLAEGQFQPSQDGNAVLFVGNVKGNTFNNVFLAQLRPNG 210

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G I+      Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 211 NQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFSDYKAVVGHRAVAM 270

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  L   +           +  R+EFH RLT     V   L++++      
Sbjct: 271 DNTQAEQMSMLTLWQSDD----------QEARAEFHWRLT---LVVSVVLMALLVVPLSV 317

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     P+L+++L       + +
Sbjct: 318 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNAGK-GKLDPMLWIWLVNAVYFAIAL 372


>gi|302879722|ref|YP_003848286.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
 gi|302582511|gb|ADL56522.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
          Length = 377

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 134/364 (36%), Gaps = 32/364 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           + F+  ++     + ++    ++ I  + Q+++ +    S   +++ +L + G+     L
Sbjct: 18  RQFQRALVLEFAGNGVLVFAILLGIVVISQLIRFLGEAVSGKLAVDGVLALLGFSALNYL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++      +     L+   R++E+++  + G      I+PV   A  +   + +   ++
Sbjct: 78  SVLLSMSLFIAILLTLSRCYRDSEMVVWFSAGIGLTRWIRPVALFAAPVVTVIALLSLVL 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVDSR 179
            P          A+ +     + L   +F      D +Y   +    N  +  IF+   +
Sbjct: 138 SPWAMKRADDFKAQLESRDELATLTPGVFRESGQSDRVYFVETVDVGNGRIGNIFVRSVQ 197

Query: 180 DTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           ++Q      A+ G   ++    + ++L +G  +  +P  +D  I++F+ Y ++ ESA S 
Sbjct: 198 NSQMG-TMVAREGLQQTMPNGDRFLVLLNGTRYEGTPGERDYRIVEFERYAMRIESAASK 256

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            ++      +   L                   SE   RL   +   +  L++I      
Sbjct: 257 QLLPNVRTLSTLELW----------RNPTRWNLSELEWRLGLPISAAVLSLLAIS--LSY 304

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIH---------KIEQNPYYIPILYLFLFCIS 347
              R  + ++     L ++  ++  +S +I          K+        I  L L   +
Sbjct: 305 VNPRAGRSLN-----LVLAMVLYMLYSNMISVTNAWVGQGKLSPGIGLWGIHALMLLITA 359

Query: 348 SIFL 351
             F 
Sbjct: 360 LFFY 363


>gi|226227978|ref|YP_002762084.1| hypothetical protein GAU_2572 [Gemmatimonas aurantiaca T-27]
 gi|226091169|dbj|BAH39614.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 578

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 12/282 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y++R      + +   +  +  +  + +++  ++      + + +     +P  
Sbjct: 1   MKLLTRYVIREHIGPLVFALSALTSLLMLQYVARQLANLAGKGLPWSAIGQFFVLSLPFT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + T      M    E+     +G    T++ PVLF A+LLS+F+    + 
Sbjct: 61  VAMTLPMAVLVATLYAFGRMAAEHEITAFKASGVRVRTMMLPVLFCALLLSLFMVWFNDQ 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P     +  L            L +     + D  ++++++ +   N +  + I D  
Sbjct: 121 VLPAANHRLSMLQRDIARTKPTLALRDQALNAITDQFFMRVARTDAETNRMYDVVIYDLS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKD-ISIMKFKSYTLQT---- 230
             Q  K  YA SG            + L DG                 F+S  ++     
Sbjct: 181 RGQERKTIYADSGVFAPAPNNRDLQLTLYDGFAQEFVRGDPRQFQRSYFQSQVIRQAGMT 240

Query: 231 --ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
               A++S       +  +  L      +      +   Y S
Sbjct: 241 QGFEASNSDGYKGDREMTVCELHRKYIADAVEVERVRLEYVS 282



 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 33/99 (33%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           + E L++   E HK+       ++F L     A +         I    I   + +    
Sbjct: 445 QREGLDSLAVEIHKKFALSFACLVFVLFGPPIALRFPRGGVGVTIGVSIIVFGLYYVCLM 504

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
           G   +  K     Y    +   +F + ++ +L   +  T
Sbjct: 505 GGEALADKGRLPAYVAMWIANVIFTLVALVMLWRVESTT 543


>gi|325134627|gb|EGC57267.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
          Length = 371

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 145/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +   +   +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFAVALILLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|228472915|ref|ZP_04057672.1| permease [Capnocytophaga gingivalis ATCC 33624]
 gi|228275497|gb|EEK14274.1| permease [Capnocytophaga gingivalis ATCC 33624]
          Length = 477

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 122/296 (41%), Gaps = 22/296 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   ++ +     S  +++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFISSFLIIMVIFIFQTIWLYVDELVGRGLSFLVVIKFIALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKATRMLILFMVLLSIGVFFTFNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVD- 177
           ++P        L    +       + + +F  + D   IK++K    N   L  I I   
Sbjct: 121 LQPWSNRKFVALRDSIKNKQPSLAISQGIFNNVQD-FSIKVAKKTGENEQYLHDIVIHKV 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHR-----KSPISKDISIMKFKSYT 227
             +  T  +  A++G +   ++      +IL DG  +      KS I+      KF+++ 
Sbjct: 180 GINGDTRTVIKAKNGELSGHKKGSDVLQLILKDGSYYEDVYNDKSDITFPFVKAKFETHV 239

Query: 228 LQTE-SANSSTIVLKAN-------DQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           L  + SA ++ I    N         N+S L +   +      +  + +   F++R
Sbjct: 240 LNIDISALNADITYDENAERDYYKTMNISQLSHALDSIVQNYQQETKDFGENFYRR 295



 Score = 39.9 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           +L   L+ N +N  Y+ +L+  YR     ++   +   +      VAA   A++R+    
Sbjct: 344 SLVNSLDNNKDNVEYQQKLINVYRLTLSDKIALAITCFVLF---FVAAPLGAIIRKGGIG 400

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLLMI 354
            P+ +++ +    ++      +       NPY  P +  F      ++L ++
Sbjct: 401 MPLVVAIGLFLSYYFSGLLTKNMATNGNINPYIAPWVPTFFLLPLGVYLTIL 452


>gi|326561253|gb|EGE11612.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 437

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 109/293 (37%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F    DD ++ + +   N   L+ +        
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SDDYHLYVGEMGANREFLKDVIIIQMHTA 235

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  Q   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 346


>gi|255320991|ref|ZP_05362164.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262379919|ref|ZP_06073074.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255301955|gb|EET81199.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262298113|gb|EEY86027.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 366

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 130/362 (35%), Gaps = 19/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +ILL I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILLSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ L ++  +   I    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRNRLARLLIPLTLVYMLVQSILMLWMS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDT 181
           P      +QL+    +   F  +    F        I     + ++  L+ IF     + 
Sbjct: 122 PWGIRQFEQLTTSQAVRTGFDLVRPKEFISSGP-YTIYAGSLSEDHKNLKEIFFYQRAEK 180

Query: 182 --QTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +   +  A+  +    +D     + L  G  +   P     S  +F+SY L+ E+  +
Sbjct: 181 PGKPDVMILAKEATRVEMMDDSANVVDLVQGRRYEIYPGQPRYSQAEFESYRLRLENDKT 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +           +  L     +P           SE   R+      ++  ++++     
Sbjct: 241 ANFESDDVAALTTSKLWEQRADPVVE--------SELGWRIFVPFAIMVALILAMA--LS 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQ + +  +F +L I   +      I  +  ++   I      L   +    L  +
Sbjct: 291 EVSPRQGRYMK-LFPALLIFASLIVALMAIKTRASKDEIGIWAYPAVLLVYAVAGALFSR 349

Query: 356 KK 357
           K+
Sbjct: 350 KQ 351


>gi|218768538|ref|YP_002343050.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|121052546|emb|CAM08886.1| conserved integral membrane hypothetical protein [Neisseria
           meningitidis Z2491]
 gi|308389704|gb|ADO32024.1| hypothetical protein NMBB_1799 [Neisseria meningitidis alpha710]
 gi|319410787|emb|CBY91172.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
 gi|325128631|gb|EGC51500.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
 gi|325130631|gb|EGC53374.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           OX99.30304]
 gi|325144870|gb|EGC67158.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240013]
 gi|325201754|gb|ADY97208.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240149]
 gi|325204534|gb|ADY99987.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240355]
 gi|325205695|gb|ADZ01148.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M04-240196]
          Length = 371

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 144/365 (39%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++  +++ +  + +   + ++ +    Q +  +   +    +++ +L + G+ +  + P
Sbjct: 2   IYQRNLIKELSFTAVGIFVVLLAVLVSTQAINLLGRAADGRVAIDAVLALVGFWVIGMTP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ +  + G +    I+PV+  A+  ++ + + +  + 
Sbjct: 62  LLLVLTAFISTLTVLTRYWRDSEMSVWLSCGLALKQWIRPVMQFAVPFAVLVAVMQLWVI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYN-PNNTLQGIFIVDSR 179
           P      ++ +   +     S +E   F  L   +     +  ++  +  ++ +F+ +  
Sbjct: 122 PWAELRSREYAEILKQKQELSLVEAGGFNSLGKRNGRVYFVETFDTESGIMKNLFLREQD 181

Query: 180 DTQTHKIYYAQSG--SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANSS 236
                 I +A+ G  S++ +++ + L  G  +  +P   D + + F+   L    +    
Sbjct: 182 KNGGDNIIFAKEGNFSLNDNKRTLELRHGYRYSGTPGRADYNQVSFQKLNLIISTTPKLI 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             V        + L+    +NP ++        +E   R++  +      L+ ++A    
Sbjct: 242 DPVSHRRTIPTAQLIG--SSNPQHQ--------AELMWRISLTV---SVLLLCLLAVPLS 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMI 354
               +    + I I++ +      G + +   +E     +++ +L + +       +L+ 
Sbjct: 289 YFNPRSGHTYNILIAIGLFLIYQNGLTLLFEAVEDGKIHFWLGLLPMHIIMFVIAIVLLR 348

Query: 355 KKKYT 359
            +   
Sbjct: 349 VRSMP 353


>gi|78486088|ref|YP_392013.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
 gi|78364374|gb|ABB42339.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
          Length = 369

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 126/358 (35%), Gaps = 22/358 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ + +  +F      ++ I +  +  + + +         +++++  Y IP  
Sbjct: 1   MRILDKYLYKELFATFFAVLSVLLLITFGTEATKLLAVAVEGAIPSTVIMQVLLYKIPPA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     +  + ++ E++++ + G +     K V +  + L+        +
Sbjct: 61  LEVILPLVALLSVMLAVGRLYQDQEMVVLQSCGIATSFFQKRVFWFLVPLAFLTAWVSLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSR 179
           + P      ++L  +AQ     + L    F  L +            N  L+ +++  + 
Sbjct: 121 VTPWSYEQERKLIMEAQTTSPLAALVPGKFNPLPNGEGIFYTRSIKSNGDLESVWVRLNT 180

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D +   +  A  G  +    +  ++L +G  +       D ++ +F  +        S++
Sbjct: 181 D-ERDILLMAPKGKFEWINGKLVLVLLNGRSYEGLKKGDDFTVREFDRFEGFLPEIQSTS 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAADK 295
              +  +   S L   +                  H+ L QW  + P    ++ ++    
Sbjct: 240 TAQQVFEIPTSTLWQSDKPE---------------HEALLQWRIVTPFSILVLGLLGLKM 284

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                +  +   +F +L + + ++        +   N    P + L+   +  +   +
Sbjct: 285 SKSGPREGRFAKVFFAL-VLYVIYNQLLVTFRESISNEALSPWVGLWPIPVVFLMYAL 341


>gi|300866498|ref|ZP_07111188.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335455|emb|CBN56348.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 369

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 137/355 (38%), Gaps = 21/355 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPM 63
           + Y+ + +   FL        +   +  + + +  V+ S    +  ++I    +P  + +
Sbjct: 2   DWYLTKELIGPFLFGVGLFSSVGVTVGAVFELVRRVTESGLPFSTAIQIFLLKMPYFIVL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + +    + M+ ++E++ + + G +   L+ P + L++ ++   F    +I P
Sbjct: 62  AFPMSMLLASLMAYSRMSSDSEIVALRSCGINVYRLVVPAVILSLAVTGMTFAMNELIVP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL------------YIKISKYNPNNTLQ 171
                      +A       + E+N+F+    ++                 +++    ++
Sbjct: 122 AANYQATVTLDRALKREKPLFQEKNIFYPEFRNVDKGNGEESVLTRLFYAEQFD-GKQMK 180

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT- 230
           G+ I+D    + ++I  ++S   +  + +    +G V+  +P     +I++F+   LQ  
Sbjct: 181 GLTILDRSQPELNQIISSESAIWNPAQNSWDFFNGTVYIVAPDGSYRNIVRFEHQQLQLP 240

Query: 231 -ESANSSTIVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
               + +       + N++  ++  N    +   + +   +    ++       ++FGL+
Sbjct: 241 RTPLDLAAKARDYGEMNIAQAIDYLNLIRSSGDEQKIRKLKVRIQEKYALPFVCIVFGLV 300

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                 K    ++  +     IS+ + F  +  FS+I   +       P++  +L
Sbjct: 301 GAALGTKP---QRTGRATSFGISVIVIFTYYV-FSFITSSMGLKAILTPVMAAWL 351


>gi|256823038|ref|YP_003147001.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
 gi|256796577|gb|ACV27233.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
          Length = 370

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 25/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S       +  I    +I++ +   ++   S +++ ++ G   P ++ 
Sbjct: 2   ILSRYLNREVLTSTTAILGVLFAIFMSQRIVKYLAQAAAGDISGSMVWQMVGLYSPILIG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P  F +      + +  ++E+ ++ + G S   LI+ +   A+ +++        + 
Sbjct: 62  FLLPLAFFLGCLLAFSRLYVDSEMAVLRSVGVSERFLIRMLAPAALFIAVVGGAVTLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT 181
           P+      Q+  +    L  S L    F         +       +  L   F+ +    
Sbjct: 122 PQANELTYQIRDEHASKLELSMLTPGHFQMFQQGQGVVYADSSERSTKLGNFFLAEMPSE 181

Query: 182 QTHKI--YYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    AQS        LD+  + LNDG V+      +   + +F+ Y  + ++  S
Sbjct: 182 MNPNTRIISAQSAERFYDESLDKNFLQLNDGHVYELDGNQQVSKVTRFERYFARLDAERS 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +  +   LL                  +EFH RL     P+   L   +A   
Sbjct: 242 IVSRRKISATSTPELL----------ASGDGASWAEFHWRLAV---PISVPLFMFLAIPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIF 350
             +  +  K   +  +L +  G           +E         +IPI  +  F  + + 
Sbjct: 289 SRVRPREGKFAKMLPALMVYIGYIVLIVVFRRALESEQIPGWLGFIPIYLVMAFLAARLL 348

Query: 351 LLMIKKKYTK 360
            L  +    K
Sbjct: 349 YLHGRSNSPK 358


>gi|323525104|ref|YP_004227257.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
 gi|323382106|gb|ADX54197.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
          Length = 365

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 132/363 (36%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIVILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESASTHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES     
Sbjct: 182 GKV-NVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    L+ L NP   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGTPTLTLLRNPTNENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    S+I          + IL++ +  I +    +  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|162148704|ref|YP_001603165.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787281|emb|CAP56875.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
          Length = 402

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 135/362 (37%), Gaps = 9/362 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y++  +   FL+S   ++    + ++L  +N+++S   +L I   +   L+P  L
Sbjct: 17  GTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADLVPHYL 76

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +   +V+  M++N E+  +  +G S + + +P + +  +L +  F     I
Sbjct: 77  GLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYGFI 136

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +Q    A  A    +L+  +F    D L +   +     T L+ +FI D   
Sbjct: 137 QPYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDKS- 195

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEV-HRKSPISKDISIMKFKSYTLQTESANS 235
               +   A SG + +        + L  G +   ++     ++     +   QT S   
Sbjct: 196 AGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDDRPTLTTFDTTTRFFQTSSKAH 255

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +      +++ L+ L   +               +E H RL + +      +++   A  
Sbjct: 256 AFRNRGNDERELTVLELRHGIRHRDLAIRRTHLVAELHFRLARAMAIPFIPILACALAGM 315

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQR        ++S+          +     ++     +++          + +I 
Sbjct: 316 AK--RQRHNTGLAIAAISLVGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWLIL 373

Query: 356 KK 357
           ++
Sbjct: 374 RR 375


>gi|209545529|ref|YP_002277758.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533206|gb|ACI53143.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 402

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 135/362 (37%), Gaps = 9/362 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y++  +   FL+S   ++    + ++L  +N+++S   +L I   +   L+P  L
Sbjct: 17  GTLDRYLIGQMLPPFLLSLGVVMTALLLERLLTLLNVLASDGGTLKIFAGLLADLVPHYL 76

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +   +V+  M++N E+  +  +G S + + +P + +  +L +  F     I
Sbjct: 77  GLALPAAICVSVFSVVRRMSQNNEIDALMASGVSLLRIARPFVVMGAVLGLVGFSLYGFI 136

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R   +Q    A  A    +L+  +F    D L +   +     T L+ +FI D   
Sbjct: 137 QPYARYDFRQALYIASHAGWTPHLQARMFAAPSDTLMLTADQVQGAGTRLRRVFIRDKS- 195

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEV-HRKSPISKDISIMKFKSYTLQTESANS 235
               +   A SG + +        + L  G +   ++     ++     +   QT S   
Sbjct: 196 AGLERDITADSGRLLMTDDGTTVRLDLAHGVIVTDRNDGRPTLTTFDTTTRFFQTSSKAH 255

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +      +++ L+ L   +               +E H RL + +      +++   A  
Sbjct: 256 AFRNRGNDERELTVLELRHGIRHRDLAIRRTHLVAELHFRLARAMAIPFIPILACALAGM 315

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQR        ++S+          +     ++     +++          + +I 
Sbjct: 316 AK--RQRHNTGLAIAAISLVGFDHALQLGLSLVASRSMSPWLVIWGPFAVFGFACVWLIL 373

Query: 356 KK 357
           ++
Sbjct: 374 RR 375


>gi|269792897|ref|YP_003317801.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100532|gb|ACZ19519.1| permease YjgP/YjgQ family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 356

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 123/359 (34%), Gaps = 14/359 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           IL  +   F         +     +L RI +LV     SL +++++  Y +P V+    P
Sbjct: 2   ILMELLGPFAFGVAAFTVLMVAGSLLFRIADLVIQRGVSLGVVVRLFLYYLPGVVVTTIP 61

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +        ++ ++E++ +   G     +++P++  + L S+  F+    + P   
Sbjct: 62  MGSLLGALMGFGKLSSHSEIVALKACGVPFRRMVRPLVVASALASVVTFVLNETVVPLSE 121

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNP-NNTLQGIFIVDSRDT 181
              + + A   +       +E +F R +        I + +  P    ++G+ + +    
Sbjct: 122 RAARNVLAYEIMRERPPEFKERMFLREEGSSGLRRVIYMDRIRPRTGEMEGVLVQEFEGG 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSSTIV 239
           +  ++  A+       +    + +G+    +P      +  F  +S  L    A      
Sbjct: 182 RLSRLTSARRAVWRDGK--WTMEEGKTFEVAPDGGVKFLYSFARESLRLDLSPARVEAQS 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +  ++   +         +       R  FH RL      ++  L+   A  +    
Sbjct: 240 TDPSQMSVFQ-MAEQIGLMERQGSDATKLRVMFHLRLAVPWASLVLALVGASAGVRPQ-- 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKKK 357
           R       + +S+ I F  +   S+     E +    +   ++         L M+++ 
Sbjct: 297 RSGGAGVGLGLSVVIVFLYYVVLSFCQSLGEASYLPPVVAAWVPNLVFGVAGLFMVRRG 355


>gi|254360524|ref|ZP_04976673.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261492350|ref|ZP_05988912.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496136|ref|ZP_05992544.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153091064|gb|EDN73069.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|261308238|gb|EEY09533.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312033|gb|EEY13174.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 369

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 127/356 (35%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S L     ++ I +  Q+++ ++   S     ++++ + G  +PT+  
Sbjct: 2   ILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVPADLVVSLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L      +E+ ++   G  +  L+K  +FL+I  +     +   + 
Sbjct: 62  LMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVAMFLSIFTTALAVYNVFWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P   +   ++ A+A+    F+ L    F        + I K   NN+L  I++   + + 
Sbjct: 122 PWAINKQSEMLAEAKANPRFAALSAGQFMS-AGGYVLFIDKIE-NNSLNDIYVFQPEQQK 179

Query: 181 TQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+SG++       Q + L + +    +P S D  I  F++Y+      +  +
Sbjct: 180 KNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSADFRISHFENYSAYLGYQDVES 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L+                 ++E H RL   L   +  L+++       
Sbjct: 240 DEKLVQRADFKKLM----------ETKTPEAKAELHWRLALILAVPLMALLAVP--MSSV 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    +   L          S              ++ L       + +++
Sbjct: 288 NPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSVAFLVLGVIL 343


>gi|291616051|ref|YP_003518793.1| YjgP [Pantoea ananatis LMG 20103]
 gi|291151081|gb|ADD75665.1| YjgP [Pantoea ananatis LMG 20103]
          Length = 366

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q++  A+     + L    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG ++  +     + L+ G     + + +D  I  F +Y        ++ 
Sbjct: 182 NARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQATL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +    + LL+               +R+E H R+T     ++  L+ +       
Sbjct: 242 DPNDVDQATFATLLS----------NKTPEFRAELHWRITLVFAVLVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  +       P +++++  IS + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|188532528|ref|YP_001906325.1| Putative permease [Erwinia tasmaniensis Et1/99]
 gi|188027570|emb|CAO95417.1| Putative permease [Erwinia tasmaniensis Et1/99]
          Length = 366

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 129/361 (35%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +  ++   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYAESEITVMHACGLGKSVLVKAAMILMLFTALLAAVNVGWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+     + L    F +  D   +   +    +T   +F+   R   
Sbjct: 122 PWSSRYQNEVLQNAKANPGAAALAAGQFQQSGDGQSVLFIENVKGDTFSNVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  ++ G ++      Q + L+ G     + + +D  I  FK+Y         + 
Sbjct: 182 NARPSVVVSEHGHMEQRRDGSQVVTLDQGTRFEGTALLRDFRITDFKNYQAIVGHQVVTL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   +L  L + +  +          +RSE H RLT     +I  L+ +       
Sbjct: 242 DPNDSEQMSLDTLWHSDKPD----------FRSELHWRLTLVFSVLIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ + +  +   L   + VF+     +          P + ++   +  + L ++   
Sbjct: 290 NPRQGRVLSMLPAML--LYLVFFLLQSSLRSSGDKGRVDPAIAMWTVNVVYLALAVLLNA 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|284049007|ref|YP_003399346.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
           20731]
 gi|283953228|gb|ADB48031.1| permease YjgP/YjgQ family protein [Acidaminococcus fermentans DSM
           20731]
          Length = 363

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 124/370 (33%), Gaps = 23/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL-VSSSTESLNILLKISGYLIPT 59
           M   + YIL+ + + FL        I      L R+   ++    S + L+++   L+P 
Sbjct: 1   MSILDKYILKQMMQPFLFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLIRLFLCLMPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    +     +  ++ N+E+  + + G S   +  P+L    ++S+F  +   
Sbjct: 61  VINYTFPMSMLLAALLTMGQLSSNSEITAMRSGGLSFRRIAAPILAAGFVVSLFSVVWAE 120

Query: 120 IIEPKCRSTIKQLSA---------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
            + P  +S  +++           + Q  +    + +    RL                +
Sbjct: 121 KVVPPAKSEYERIIKVEIKRDTKPRTQNHVLIKQVSKGQLVRLTYARTF----DEKQGMM 176

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           + I I D  + +  +I   ++      +   I+  G +   +        M F    L  
Sbjct: 177 KDITIEDWDNGKVARIQ--RTPQAKWTQGTWIMEGGTITDLTGKDGVARTMTFDKQVLPI 234

Query: 231 ESANSS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                + T+  K  DQ     L    +    +      Y  E ++R T  L    F LI 
Sbjct: 235 SETPKAITLDQKDPDQMTIGELKMYIDILKRQYMPTSKYEMEIYRRFTVPLASFFFALIG 294

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCIS 347
           +         ++      +  S+ I F  +   +++     Q     P+L          
Sbjct: 295 V---PLGVQSQRTGASMGLGFSVVIIFIYYSIMTFMTGL-GQGGVIPPLLAAATPNLLCG 350

Query: 348 SIFLLMIKKK 357
           +    MI KK
Sbjct: 351 AFGCWMIYKK 360


>gi|37528301|ref|NP_931646.1| hypothetical protein plu4480 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787739|emb|CAE16852.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 366

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 144/368 (39%), Gaps = 27/368 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQVAILFILLLIFFCQRLVEILGAAVEGNVPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+   L LA+L S    ++   + 
Sbjct: 62  LILPLSLFLGVLMTFSKLYTESEITVMHACGLGKRVLVVSALILALLTSALAAVNVIWVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+ A A+   + + + E  F   +D  L + I      N  + +F+   R  
Sbjct: 122 PWSSKYQEQVVADAKANPSLAAIMEGRFKPSEDGNLVLYIGNV-HGNKFENVFLAQLRPV 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D Q   +  +  G +      +Q ++LN G  +  + + +D  I +F+ Y        S 
Sbjct: 181 DNQRPSVVISNGGHMVERPDGKQVVVLNHGTRYEGTAMLRDFRITEFRDYQAIIGHQTSI 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   +++  L   N  +           R+EFH RLT  L  +I  ++ +      
Sbjct: 241 VDNNKVEQKSIIQLWQDNDKDS----------RAEFHWRLTLVLSVLIMAMMVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++++L   + + L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGSKGKLDPMIWMWLTNGTYLMLAL 343

Query: 354 IKKKYTKI 361
           +   +  +
Sbjct: 344 VLNIWDTL 351


>gi|325983220|ref|YP_004295622.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
 gi|325532739|gb|ADZ27460.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
          Length = 358

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 129/336 (38%), Gaps = 25/336 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI R I   F +  L ++ +       + +    + T  +  L+K+        
Sbjct: 1   MKLIERYIAREIMLPFTVVILILIGLFASFSSARLLAGAVTETLGIAGLIKLVFLKTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P    +     L  +N++ EL +I + G S   ++  VL +AI + I   +  + 
Sbjct: 61  LEVLIPIALYISVIMGLGRLNKDQELNVIRSVGISGHRIVIAVLSVAIPVGIISGMLSSY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           + P        L A+A+  L  +  +   F+        I +   N  +  +Q IF    
Sbjct: 121 VRPWAYGESYILDAQAEAELNTNRFQAGRFYGSEKSGRVIYVRNKNEADKQMQNIF-HYI 179

Query: 179 RDTQTHKIYYAQSG-----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +   + +I  A+       + + DR  I L++G +++ + I+    +++FK      ++ 
Sbjct: 180 KKPDSSEIVIAKQAQQIKPTAEDDRPHIQLSEGTIYQLTSIASTDDVIQFKKMIYFIDND 239

Query: 234 NSSTIVLK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +    K A  + L     P                +E   R+++ L  V+  LI++  
Sbjct: 240 FVTNYRRKAAATRTLWESDVP-------------RDIAELQWRISRPLATVLLALIALTF 286

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
                  RQ K      I+ ++ F  ++  S +   
Sbjct: 287 IHTAP--RQDKTEKTYLIA-ALVFAAYYNLSGLAKT 319


>gi|326568200|gb|EGE18282.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC8]
          Length = 442

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 108/293 (36%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 62  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 121

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 122 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 181

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F     D ++ + +   N   L+ +        
Sbjct: 182 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTA 240

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  +   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 241 EPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 300

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 301 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 351


>gi|90408708|ref|ZP_01216857.1| putative permease [Psychromonas sp. CNPT3]
 gi|90310190|gb|EAS38326.1| putative permease [Psychromonas sp. CNPT3]
          Length = 365

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 134/356 (37%), Gaps = 20/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++    +S       ++ I    + +  +    +   + +++L +    +PT+  
Sbjct: 2   ILRRYLMLETFKSQFGILFVLLLIFVSQKFIAILEQAINGVIAPDLVLTLLYLNLPTLGT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        ++  +E++ + + G S  +++K  L L+     F   +   + 
Sbjct: 62  LMLPISFYLAILFAHGRLHSESEMVAMTSCGYSPNSVLKATLLLSFFTFAFASFNSLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVD--SR 179
           P   + +  +  KA+     + L E  F +  ++   + + KY+    L+ IF     S 
Sbjct: 122 PSAENEMIAVIEKAESDAGVATLIEGRFHKSSENGGVVYVEKYHEGQKLERIFASYWPSD 181

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + +   +  A  GS+    D   + L DG+ +  +    +    +F SY +   +    +
Sbjct: 182 ENKAPSVITALHGSVQEKEDGTWLTLEDGQSYTGNVGEHEFDSSRFSSYEVHIANREIRS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +    S LL    +            R+E   R+   L  +   L++ +A     
Sbjct: 242 RSRGVSALPTSILLTQTDD----------KSRAELQWRMAIPLSIL---LLTFMAVPLAK 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--FLFCISSIFL 351
           +  ++ +   +  +L++    F   S     IE+    I  ++    +F +  +FL
Sbjct: 289 VNPRQGRYAKLMPALALYLTYFLLLSTSKSLIEEGTLPILSIWGVQIVFLLGGVFL 344


>gi|37520500|ref|NP_923877.1| hypothetical protein gvip124 [Gloeobacter violaceus PCC 7421]
 gi|35211494|dbj|BAC88872.1| ycf84 [Gloeobacter violaceus PCC 7421]
          Length = 387

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 128/368 (34%), Gaps = 23/368 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        I   +  + + + L+S +   L   L++    +P 
Sbjct: 16  LTIMDRYLASELVLPFLFGVAAFASIGMAIGSLFELVRLISENGLPLTTALQVFLLRMPQ 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P      T      ++ + E+  +  +G S + ++ P L L++++S+  F    
Sbjct: 76  IITYTFPMSVLFATLLAYGRLSGDLEITALQASGVSILRVVVPTLLLSVIVSVITFFFNE 135

Query: 120 IIEPKCRSTIKQLSAKA-------QLALTFSYLEENLFFRLDDD------LYIKISKYNP 166
           ++ P          A+A       +         E  +            + +  ++   
Sbjct: 136 VVVPTANQEASTTLARAIGGGDRPRFTKDNILYPEYNWVPGKAGEREYALIRLFYARRYS 195

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  + G+ I+D      +++  A S   D    A    +G  +         +I++F+  
Sbjct: 196 DGIMYGLTILDYSQENLNQVITADSAYFDPKTDAWRFRNGTSYLIGNDGTYRNILQFQEQ 255

Query: 227 TLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
            ++        +  V +  +     L        N R E+     S  +++         
Sbjct: 256 QVKISEDPLKFAQEVRRPEEMTTVELRRYIELAQNARQEIRGLLVS-LYQKYAIPSVCFA 314

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFL 343
           F L+          +R+++  + + + LSI     ++ F +I   + Q     P L  +L
Sbjct: 315 FALVG-----APLGLRRQRTSNALGLGLSILIIFSYYIFLFIAQALGQTGVLPPWLGAWL 369

Query: 344 FCISSIFL 351
             + ++ +
Sbjct: 370 PALITMAV 377


>gi|227824355|ref|ZP_03989187.1| permease [Acidaminococcus sp. D21]
 gi|226904854|gb|EEH90772.1| permease [Acidaminococcus sp. D21]
          Length = 362

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 123/367 (33%), Gaps = 14/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL-VSSSTESLNILLKISGYLIPT 59
           M+  + YIL+ + + F         I      L R+   ++    S + L ++   L+P 
Sbjct: 1   MRILDKYILKQMLQPFAFGVAAFSTIFVASSFLFRVTQYITQYGASYSSLFRLFLCLMPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +   +  ++ N+E+  + + G S   +  P+L    ++S+F  +   
Sbjct: 61  VINYTFPMSMLLASLLTMGQLSGNSEITAMRSGGMSFRRIAMPILAAGFVVSLFSVVWAE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLY--IKISKYNPN-NTLQGIF 174
            + P  ++  +++  +     T    ++++  +      L        ++     ++ I 
Sbjct: 121 KVVPPAKAEYERIIQQEIKNNTKPRTQDHILLKNISKGQLTRLTYARTFDEKAGVMKDIT 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I D    +  +I               I+  G +   +        M F    L      
Sbjct: 181 IEDWDKGRVVRIQRTPEAKWQNG--TWIMEKGTITEITNEEGLTRTMTFDKQVLPITETP 238

Query: 235 SS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + T+  K  D+     L         + +    Y  E + R T  L    F LI +   
Sbjct: 239 KTITLDQKDPDEMTIGELKMYIGILERQYQPTSKYVMEIYSRFTVPLASFFFALIGV--- 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF--WGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 ++      +  S+ I F  +    F   + +    P +I        C  +   
Sbjct: 296 PLGVQSQRAGTSMGLGFSVVIIFIYYSIMTFMTGLGQGGVIPPFIAAAVPNFLCGCAGAY 355

Query: 352 LMIKKKY 358
           L+ +K +
Sbjct: 356 LIWQKDH 362


>gi|312884631|ref|ZP_07744334.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367723|gb|EFP95272.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 367

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 122/358 (34%), Gaps = 25/358 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    ++++ +   +      +++       +P++  
Sbjct: 2   IIVRYLIRETLKSQFAIFFILFLVFLSQKLIRVLADATDGDIPASLVANYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LIK  L+LAI+  +    +     
Sbjct: 62  IMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIKAALYLAIITGLLAAANAFFFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDS--R 179
           P  ++ +  L  +A        L++  F    D    + I   +    LQ +F+     R
Sbjct: 122 PYSQNQLVHLQEEAAAENNVELLQKGHFQPSPDGSSVVFIDDIDKK-KLQNVFVAQLRPR 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+    + ++Q G +      RQ I + DG  +   P   D  +  F  Y          
Sbjct: 181 DSILPSVSFSQYGEVKELSDGRQVIRMYDGTRYEGIPTRLDYMVTNFDQYEGLIGQREIK 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +     +      L            +     ++E   R++  L      L++++     
Sbjct: 241 SKGRGLDAIPTLNLF----------GDHRPAAQAELQWRISLVLC---IPLLTMLVVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSI 349
           A+  ++ +   +  ++ I    F   S +   IE           PI  L L    +I
Sbjct: 288 AVNPRQGRFAKMGPAILIFLAYFLAISAMKSAIESGSVSAVIGMWPINGLLLITAIAI 345


>gi|171463871|ref|YP_001797984.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193409|gb|ACB44370.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 371

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 142/366 (38%), Gaps = 17/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L +V I     +++ +   ++   +    L +        L 
Sbjct: 2   IFKQALRRELSFTTGGVFLVLVTIMVTTLVIRILGYAANGAVNPEDTLVLIALATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VL    +++E+++   +G S   LI+P+L  A  L I + +    + 
Sbjct: 62  VLLTVSLFVATLIVLVRWYKDSEMIVWLASGLSVTNLIRPILQFATPLIIVIALLALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYN-PNNTLQGIFIVDSRD 180
           P        +S ++Q     S +    F      +    I + +   + ++ IF+  +  
Sbjct: 122 PWANRESTLISQRSQQRDDVSVVSAGQFKESAKAERVFFIEELDVDKSKVKNIFVA-NSK 180

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  + +G I   +   ++I+L++G  +   P   D  I++F  Y+ +  S ++  
Sbjct: 181 NGRLSIAVSSTGYIQNSEGGEKSIVLHNGRRYEGQPTQPDFRILEFNEYSTKIRSKDALA 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +  ++ ++ LLN +PN  +  P      R+E   R+   L  +   LI+I  A    
Sbjct: 241 PAPRDREKTITELLN-DPNPTSVNPN-----RAELLWRIGLPLMALGLVLIAIPLA---Y 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIK 355
           +  +      +F ++ I        +   + + Q     ++ I  + L  +    +L+  
Sbjct: 292 VNPRLGNYTAMFYAVLIYLIYSNLLNLTQNFVSQGRISVFVAIWPIHLLALLITTVLIRN 351

Query: 356 KKYTKI 361
           +    +
Sbjct: 352 RINPSL 357


>gi|326565140|gb|EGE15331.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 103P14B1]
 gi|326572841|gb|EGE22826.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis CO72]
 gi|326573713|gb|EGE23671.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis O35E]
          Length = 437

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 108/293 (36%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F     D ++ + +   N   L+ +        
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTA 235

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  Q   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 346


>gi|281357796|ref|ZP_06244282.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315743|gb|EFA99770.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 371

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 128/372 (34%), Gaps = 21/372 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ R    +F M+   + F      +++ ++ V S   S     + + Y++P +
Sbjct: 1   MKILNWYVTRGFLLAFFMAIGILTFGMTGANLVKVLDYV-SQGISFFTFFEFTLYILPII 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P+   +    V   ++ ++E+  +   G S + ++ P+L +   L +F    +  
Sbjct: 60  LTFTVPWAVMVAVMLVFGRLSADSEITAMRACGVSILQIVSPILIITFFLMLFCLYLQVE 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L   A +    +  E        ++  I I      + ++G+ I    D
Sbjct: 120 VGPPLLGKSRTLMQTAAINQPLAIFEPGK-QIEFENTIIYIDDKEGEDGIKGVQIYTLSD 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIIL-----------NDGEVHRKSPISKDISIMKFK---S 225
            QT  +   A+ G + +D++  +L             G   ++      +    F     
Sbjct: 179 PQTVAQDISAERGKLLVDKEKQLLIVRLFDCLVVDKKGAAEQQQDGDAGMPTRFFTQQLE 238

Query: 226 YTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           ++      AN   I  KA    L+ L+           +  E    E ++R+   L P+ 
Sbjct: 239 FSFNYGKQANERRISTKAKYMKLTDLMGKIRLTKQLERDTTE-LEVELNQRIAFALSPIA 297

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           F L+ +  A      R+   +      +                   + Y   +L+L   
Sbjct: 298 FLLLGLPLAI--RTSRRETSVGLFLSVILAGVFFLSIILCESLSSFPHLYPQYLLWLPNI 355

Query: 345 CISSIFLLMIKK 356
               +  +M  +
Sbjct: 356 IFQILGAVMTYR 367


>gi|326559485|gb|EGE09908.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 7169]
 gi|326566095|gb|EGE16252.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC1]
 gi|326567798|gb|EGE17902.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 12P80B1]
 gi|326572163|gb|EGE22159.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis BC7]
          Length = 437

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 108/293 (36%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F     D ++ + +   N   L+ +        
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTA 235

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  +   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 236 EPSDIQSRQSHKRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 346


>gi|260551090|ref|ZP_05825294.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
 gi|260405857|gb|EEW99345.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
          Length = 366

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 129/355 (36%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAK 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E  N 
Sbjct: 181 EGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIYPGQPKYTQAEFQSYRLRLE--ND 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +  +++D      +   P +           RSE   RL      ++  ++S+  ++ 
Sbjct: 239 KDVKFESSD------VEALPTSKLLAKTNDPVIRSELGWRLFGPFTIIVALMMSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     +    +       I K E + +  P   L     ++IF
Sbjct: 293 SPRQGRYYRLIPSIFIFASLIVLMIAIKTRISKGELDIWAYPAALLVYAIAAAIF 347


>gi|262274979|ref|ZP_06052790.1| putative permease [Grimontia hollisae CIP 101886]
 gi|262221542|gb|EEY72856.1| putative permease [Grimontia hollisae CIP 101886]
          Length = 366

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 129/360 (35%), Gaps = 22/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   ++ L     +  + +  + ++ +   +  +     +L + G  +P++  
Sbjct: 2   IIVRYLIRETVKTQLAVLFVLFLVFFSQKFIRVLANATDGSIPGGDVLTLVGLYMPSMGM 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LAI+       +   + 
Sbjct: 62  LMLPLSLYIGILITFGRLYAESEITVMNATGIGNKFLIRAALYLAIITGSVAAFNALWLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVD--S 178
           P       ++    +       L +       D    + ++    +   L  +FI     
Sbjct: 122 PWANDKEVKVMESLEADTGLELLVQGKIQTTPDGQAVVYVNDITGDGKDLHKVFIAQPVP 181

Query: 179 RDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           R T    +  A+ G I      RQ + LN+G  +   P   D ++  +++Y +       
Sbjct: 182 RGTLRPNVVVAEKGFISELPDGRQVLDLNNGIRYEGVPTLLDYTVTDYENYQVLIGQREV 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +      L+N          E     ++E   R++  +  +   L++++    
Sbjct: 242 RQKNRDWDAMPTQILVN----------ESSPRAQAELQWRISL-VLCI--PLMTMIVVPL 288

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
            A+  ++ +   +F ++ I    F   S     +E+   P  I +  + L  +    +L+
Sbjct: 289 SAVNPRQGRFAKLFPAVLIYLAYFLSISAAKSAVEEGKLPAEIGLWSVNLIALLVALMLI 348


>gi|110638188|ref|YP_678397.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280869|gb|ABG59055.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 483

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 100/238 (42%), Gaps = 9/238 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +L +L+     F+++   + FI  +  IL+ I+ +     S     ++  Y    +
Sbjct: 4   IKRLDLLVLKAFFGPFILTVFVVTFIFLMQTILKYIDELVGKGLSYLDYAELMMYFSMNI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP+  P    + +     ++ +  EL  I ++G S I ++ P+    +  ++ L+   N 
Sbjct: 64  LPVALPLAILLSSLMTFGNLGQFNELTAIKSSGISLIRVMVPIAIWVLGCTVGLYFFNNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIFIVD-S 178
           + PK       L    +       L+  +F+       IKI  K++ +++++G+ I D +
Sbjct: 124 VVPKANLKAFSLLYDLRQKKPSLDLKPGVFYNGIPGYSIKIVQKFDNDSSIKGVIIYDHT 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIM---KFKSYTLQ 229
           +      +  A SGS+ L  Q    A+ L  G  + +      +S +   +F   +  
Sbjct: 184 QSRGNTDVIIADSGSMYLFNQSQYLALELFRGNSYNEFKGEGGMSYINPEEFVRNSFD 241


>gi|332707452|ref|ZP_08427501.1| putative permease [Lyngbya majuscula 3L]
 gi|332353803|gb|EGJ33294.1| putative permease [Lyngbya majuscula 3L]
          Length = 388

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 138/360 (38%), Gaps = 22/360 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI+  +    L        +   +  + + +  V+ +   L I L++    IP 
Sbjct: 16  LSVMDRYIVFELIPPLLFGIGAFSSLGVAIGTLFELVRKVTEAGLPLGIALQVLLLQIPQ 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    +      + ++ ++EL+ + + G S   L+ P + +++L++   F+   
Sbjct: 76  FISYALPMSMLLAALMAYSRLSSDSELIAMRSFGVSIYRLVIPAVVVSLLVTSLTFVFNE 135

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDD-------LYIKISKYNP 166
           ++ P      K    KA      S+ E N+F       +L +         +    +++ 
Sbjct: 136 LVVPAANYQSKITLDKALKKERPSFQERNIFYPEYQKVKLPNGKKVNKIKRWFYAEQFD- 194

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              ++G+ I+D   T   +I  ++S   +         DG ++  SP +   +I++F+  
Sbjct: 195 GKQMRGLTILDFSQTGLEQIVTSESAVWNPTENLWDFLDGTIYIISPDASYRNILRFQKQ 254

Query: 227 TLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPV 283
            LQ      + +       + N++  L       +    + +   R    ++++     +
Sbjct: 255 KLQLPRTPLDLAKKNRDYGEMNIAQSLERLEVLRHSGNAKKIRKLRIRIQQKISFPFVCL 314

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FGL+      +    ++  K     IS+ + F  +    +I + +     + P++  +L
Sbjct: 315 VFGLVGASLGTRP---QRTGKATSFGISVLVIFSYYLLG-FITNALGLVNIFSPLMAAWL 370


>gi|284051460|ref|ZP_06381670.1| permease YjgP/YjgQ [Arthrospira platensis str. Paraca]
 gi|291568812|dbj|BAI91084.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 392

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 131/379 (34%), Gaps = 30/379 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVI-QILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI++ +   F+        +A  +  + + +  V+ S   +++  ++    +P 
Sbjct: 19  LSVLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPD 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   ++ ++EL+ I + G S   L+ P +  + +++   F    
Sbjct: 79  FMVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFVVTGMTFAFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYN 165
           II P           KA      +    N+FF   + +                   ++ 
Sbjct: 139 IIVPAANFQATMTLQKALNEDALNISSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEF- 197

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            +  + G+ I+D       +I  +++   +         +G V+   P     +I +F  
Sbjct: 198 ADGKMSGVTILDRSRAGITQIISSRTAIWNPQESTWDFYNGTVYIVDPDGSYRNIARFDH 257

Query: 226 YTLQTE--SANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
             L       + ++      + N++     L     + +    L    R +  ++     
Sbjct: 258 KQLHLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQ--QKYALPF 315

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             V+FGL+      +     +  +     IS+ I F  +   S+I   I Q     P + 
Sbjct: 316 VCVVFGLLGSSLGSRPG---RTNRATSFGISVMIIFAYYL-LSFITGAIGQKGIISPFMA 371

Query: 341 LFL---FCISSIFLLMIKK 356
            +L     +     L+ + 
Sbjct: 372 AWLPTMLGLGVSGFLLYRS 390


>gi|296114026|ref|YP_003627964.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|295921720|gb|ADG62071.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
          Length = 396

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 108/293 (36%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 16  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 76  LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F     D ++ + +   N   L+ +        
Sbjct: 136 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTA 194

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  Q   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 195 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 254

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 255 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 305


>gi|34498370|ref|NP_902585.1| hypothetical protein CV_2915 [Chromobacterium violaceum ATCC 12472]
 gi|34104224|gb|AAQ60583.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 368

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 101/286 (35%), Gaps = 14/286 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  + L   + ++ I    Q +  +   +    +   +  + G+      P
Sbjct: 2   VFQKSLTRELTLTALGVFVVLLAIIVSTQAINLLGRAAEGQIANEAVTALIGFWTLGFFP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R+ E+++  + G S    + P++   + L+I +      + 
Sbjct: 62  VLMILTVFVSVLVVLTRTWRDHEMVVWLSAGLSLRDWVWPIMRFTLPLAILIAGVTLFVG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSRD 180
           P      +  +   +     S +   +F        +   +      +    IF+ D  D
Sbjct: 122 PWADQRSQDYAEIIKRREEISAISPGVFKESASSSKVYFIENYSGLHSAATNIFMQDMTD 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +     +A+ G I +       ++L DG+ +   P   D  I +FK YT     + + T
Sbjct: 182 GKV-STIFAKHGYISIKPDGERVLVLEDGKRYVGEPGQADYQIGEFKRYTASLGDSQAVT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
                     + +L     NP Y        R+E   RL+  +  +
Sbjct: 241 GPASNRQSIPTSVLLAGSGNPEY--------RAELAWRLSMPISCI 278


>gi|119503287|ref|ZP_01625371.1| predicted Permease [marine gamma proteobacterium HTCC2080]
 gi|119460933|gb|EAW42024.1| predicted Permease [marine gamma proteobacterium HTCC2080]
          Length = 363

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 119/359 (33%), Gaps = 19/359 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F LY+ R +    L     +  + +  + ++ +   +  + S ++LL +  + +P+ 
Sbjct: 1   MRIF-LYLTRDVVTHTLAVAFVLFLVVFSGRFIKYLAEAAVGSLSADVLLPVMLFKLPSF 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +     L  M   +E++++   G S   L   +L   + +   +      
Sbjct: 60  FELILPLALFIAVLLSLGRMYAESEMVVLKACGISPSRLAVFLLVPGLFIMCLVAGLTMY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
           + P+  +  ++L    + A     +    F       L     + +    +  +F+V+ +
Sbjct: 120 LGPEGSARAQRLLDNPRNAEGLQLMAAGRFKSQRGGELVTYTERIDKAGVMHNVFVVEEQ 179

Query: 180 D-TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             T   ++  AQ   I  D    R+ + L  G  +   P       + FK          
Sbjct: 180 SGTDATQVTLAQEAEIITDSATNRRYLELRGGTRYSGVPGESAYEAVAFKRLGELIPEER 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S       D   +  L  + N            R+    R++      +  +I++    
Sbjct: 240 DSLRASTRIDATPTADLLSSDNP---------RKRATLWWRISLPFLVPVSVVIALA--- 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 +R +   +  +L++    F   +     +E       +L   L        L+
Sbjct: 288 LSKTDARRGRYARLGPALALFLTYFLALTQARSLMESGSGPGAMLATHLMFSLVALFLL 346


>gi|152987845|ref|YP_001346668.1| hypothetical protein PSPA7_1283 [Pseudomonas aeruginosa PA7]
 gi|150963003|gb|ABR85028.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 372

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 125/361 (34%), Gaps = 26/361 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +        L  I  + IP  L ++ 
Sbjct: 5   RYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A+L++I +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSR---- 179
            +    L  K      F  L    F  + D   +    + + +   L GIFI        
Sbjct: 125 INQFALLLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSS 184

Query: 180 -DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   I  A+ G+  I  D    +IL++G  +  +P   +   +K+ +Y +      +
Sbjct: 185 NQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIKYDTYGVMLPKPEA 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S+ V + +      L   +             Y++E   RL+  L   +  L+++     
Sbjct: 245 SSEVSERDAVPTVDLFGSDNP----------RYQAELQWRLSTPLLVFVVTLLAVP--LS 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY----LFLFCISSIFL 351
           R   RQ + +  +   L     +    +      +        L+    LFL     +F 
Sbjct: 293 RVNPRQGRFLKLLPAILLYMAYLALLIAVRGQLDKGKIPMAVGLWWVHGLFLAIGLILFY 352

Query: 352 L 352
            
Sbjct: 353 W 353


>gi|313205632|ref|YP_004044809.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
           15868]
 gi|312444948|gb|ADQ81303.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
           15868]
 gi|315022637|gb|EFT35662.1| hypothetical protein RAYM_03529 [Riemerella anatipestifer RA-YM]
 gi|325334940|gb|ADZ11214.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
          Length = 484

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 7/226 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI++     FL     + FI  V  I  ++   +    S   + K+  Y+  +V
Sbjct: 2   LKKLDRYIIKTFFGPFLFIFSVLFFIFLVNIIWIKLYQFTGKGLSPFEIGKLLFYMGVSV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    + +     +     EL  +   G S   +++P++F+  LLSI LFI  N 
Sbjct: 62  VNMVLPLTVLLSSIMTFGAFGERYELAAMKAAGISLFRIMRPLIFVVTLLSIILFIFSNN 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
           + P      K +     +           F        +K  K +  N   L+GI I   
Sbjct: 122 VIPDFNRKAKNMLYNIAVTKPALNFTAGQFIGAIPGASVKFDKISGENGENLEGIIIHKE 181

Query: 179 RDTQTH-KIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDIS 219
            +     +   A  G     +      +IL  G V+     S + +
Sbjct: 182 VNGNNPQQTIIAPKGKFVPAQNRNYLKLILYKGYVYEDENTSYNYN 227


>gi|119944176|ref|YP_941856.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
 gi|119862780|gb|ABM02257.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
          Length = 358

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 128/356 (35%), Gaps = 22/356 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++    +S +     +V I    + +  +    +     ++++ +    +P +  
Sbjct: 2   ILLRYLMLETFKSQIGILFVLVLIFVSQKFITILAQAINGVIPADLVMTLLYLNLPQLGT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        ++  +E++ + + G S   ++K  L L+ L   F   +   + 
Sbjct: 62  LMLPISFYLAVLFAHGRLHGESEMIAMSSCGYSPNNVLKATLLLSFLTFAFAAYNSLYLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--SRD 180
           P     +  +  +AQ   + + L E  F +   +  +   + + +  L  IF        
Sbjct: 122 PLSEDKMISVIEEAQANTSSATLIEGRFHKTSGNGSVVYIEKSADKKLDKIFAAHWPEDR 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            Q   +  A  G ++   D   + L DG+ +       +    +FK+Y +   +      
Sbjct: 182 KQAPSVLTAAEGYLESKKDGTWLTLTDGQRYAGIVGQHEFDHSEFKTYEVHIANREVQKQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V        + L   + +NP Y+        +E   R+     PV   L++ +A     +
Sbjct: 242 VRGVQALPTAALF--SVDNPKYQ--------AELQWRIG---IPVSILLMTFMAVPLAKV 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             ++ +   +  +L++    F   S     IE        L +F   I  I  L++
Sbjct: 289 NPRQGRYSKLLPALALYLTFFLLLSTAKSLIED-----GSLPVFSIWIVQISFLLL 339


>gi|253997951|ref|YP_003050014.1| permease [Methylovorus sp. SIP3-4]
 gi|253984630|gb|ACT49487.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 366

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 138/362 (38%), Gaps = 24/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  +L+ +  + + + L +  I    ++   I + +  + + + +  + G+ +   LP
Sbjct: 2   LFKRSLLQELVGTAIGAFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +     LT  +R++E+++  ++G      I+PVL  AI +   + +    + 
Sbjct: 62  MILSLTIFLAVLLTLTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNP-NNTLQGIFIVDSRD 180
           P   +   +   + +     + +   +F    + D    +  ++   N ++ IF+   + 
Sbjct: 122 PWATNKGSEFRDQLKSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQH 181

Query: 181 TQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +  +Q      D     +++  G  +   P + + S  +F+ Y+++ E       
Sbjct: 182 QRLGVVVASQGHRTVADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEE 241

Query: 239 VLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                      LL N NP N            +E   RL     P+   L+ ++A     
Sbjct: 242 PPGTAALGSVELLKNHNPANN-----------AELQWRLA---IPISAFLLVLLAIPLSF 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLM 353
           +  +  +   + ++L I   ++     I+          P++ L+     F + +I++  
Sbjct: 288 VDNRSGRSANMMLALLIYI-IYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMFY 346

Query: 354 IK 355
            +
Sbjct: 347 RR 348


>gi|183600430|ref|ZP_02961923.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
 gi|188020226|gb|EDU58266.1| hypothetical protein PROSTU_04001 [Providencia stuartii ATCC 25827]
          Length = 365

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 139/358 (38%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  + +  +          +++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLMLIFFSQKSIDILGAAVQGNIPSDLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLATLTALVAIGNIAWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+ A A+     + + E  F    D ++ + I      N  + +F+   R  
Sbjct: 122 PWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDRNIVLYIGDV-KGNDFKNVFLAQLRAT 180

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + Q   +  A SG +  D   RQ ++L++G  +  + + +D  I  FK+Y    +   S 
Sbjct: 181 NEQRPSVVVADSGYMREDADGRQIVVLDEGTRYEGTALLRDFRITDFKNYQAVIDHKPSD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +   +N+  L   N  + N          +EFH RLT     V+  L+        
Sbjct: 241 ARNDRVEQKNMLQLWKANDFDSN----------AEFHWRLTIVFSVVVMALM---VVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLM 353
            +  ++ ++  +  ++ +    F   S + +  E+ +      ++       ++ +++
Sbjct: 288 EVNPRQGRVLSMLPAMLLYLIFFLLQSTLRNSAEKGDVDPKYAMWAVNLGYLALAIIL 345


>gi|326574663|gb|EGE24599.1| putative ABC transporter permease protiein YjgP/YjgQ [Moraxella
           catarrhalis 101P30B1]
          Length = 437

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 108/293 (36%), Gaps = 19/293 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +  +  +   F+V I    ++++   + +    ++ +L ++ GY  P  L 
Sbjct: 57  ILRRYMTTQVASTTALVLGFLVVILLGGRLIRYFGMAAEGGLNVGVLFRLIGYNFPYFLE 116

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  + + ++ L ++L         + +
Sbjct: 117 LILPLSFFIGLMLVFGRLYTDHEMTVMNASGISRGRVARLLMPLVVVLMCIEGWVSMVAK 176

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIF------- 174
           P        +  +  +A  F  +    F     D ++ + +   N   L+ +        
Sbjct: 177 PWGMERATNIWQEQSVAQVFDLIRPQEFIS-SGDYHLYVGEMGANREFLKDVIIIQMHTA 235

Query: 175 ----IVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYT 227
               I   +  Q   I +A+S +          + L  G  +   P S+  S + F+ Y 
Sbjct: 236 EPSDIQSRQSHQRDSIIFAKSATHVETGNGQIQLDLQQGRRYEVDPTSRQYSQIGFERYR 295

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           +         T  ++    + + LL  +    + + +  +   +E   RL+  
Sbjct: 296 MTLSVKPPEGTSHIRIEGVSTTELL--SIIQGHSKRDNPQEAYAELGYRLSMP 346


>gi|262038173|ref|ZP_06011570.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
 gi|261747821|gb|EEY35263.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
          Length = 366

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 132/371 (35%), Gaps = 17/371 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  +++ +  + +S      ++    Y++P +
Sbjct: 1   MKIIDKYIYNSLILPSVFGISIFTFILMLNVLIEAMERLFASDLPFLSVVDYFFYVVPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G S   +I+P     ++L+      E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIIAMEGSGISLFRIIRPAFIFGLILTFIGLGLEIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQG--IFIVD 177
           + P+    I + +         S  EE +F    +      I K +         + +  
Sbjct: 121 VNPRALENINKQTKMLLATRPNSLTEEKIFLTNPEKGFGFYIDKVDNKKATASQFLLLNK 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE----SA 233
             +     I+ A+S     D   I+L+D + +            ++K   +       S 
Sbjct: 181 QGNNPYPVIFLAKSARF--DPGVIVLSDVKGYSFDKEGNSQVAAEYKEQNVPVSTFFTSE 238

Query: 234 NSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                  K ++ NL  L    N N  NP  +   L+    E ++R+   L  V    +  
Sbjct: 239 EGEQRQKKRSEMNLKELREFYNNNIGNPEMKEAALKALI-ESYQRVIGPLASV---FLCW 294

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSI 349
           +        R+  K     ISL + FG     +Y    I +N   + I +++  F +  +
Sbjct: 295 LGVLLSVGNRRSGKGISFGISLIVIFGYIAIVNYAKIMILKNNVPVSIAMWIPNFILFLL 354

Query: 350 FLLMIKKKYTK 360
            +    KKY +
Sbjct: 355 CVYFSIKKYRR 365


>gi|237799873|ref|ZP_04588334.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022728|gb|EGI02785.1| hypothetical protein POR16_13645 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 375

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 126/358 (35%), Gaps = 29/358 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAISAVLLVFIMSGRFIKYLAQAASGALDPGVLFMIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        M   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRMYLESEMTVLAATGMSQQRLLAMTMGPAALVGLVVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +    L  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLGGVFISEKRMSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVQPNGSRFLILENGYRYDGNPGAADYRVVKYDTYGAALPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  +        S L                   +E   R++  L   I  L++I    
Sbjct: 245 ISEEITDREAIPTSELF----------GSSTPRNVAELQWRISLPLSVFIVTLMAIP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ + +I+L
Sbjct: 293 SRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345


>gi|260596296|ref|YP_003208867.1| lipopolysaccharide ABC transporter permease LptF [Cronobacter
           turicensis z3032]
 gi|260215473|emb|CBA27590.1| Lipopolysaccharide export system permease protein lptF [Cronobacter
           turicensis z3032]
          Length = 370

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 128/348 (36%), Gaps = 25/348 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLALLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+L  I   ++     
Sbjct: 62  LILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVDGSKFKDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  FK Y         + 
Sbjct: 182 NARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L   +  +           R+EFH RLT     ++  L+ +       
Sbjct: 242 DPDDAEQMDMQTLWQADSKSA----------RAEFHWRLTLVFAVIVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLF 342
             RQ +      +S+  +  ++  F  +   +  N       P+++++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMW 332


>gi|290968957|ref|ZP_06560492.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
 gi|290780913|gb|EFD93506.1| YjgP/YjgQ family [Megasphaera genomosp. type_1 str. 28L]
          Length = 362

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 118/367 (32%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        +      L RI ++++    S     K+    +P+
Sbjct: 1   MRILDKYILKEFIGPFLFGVCAFTAVFVGTGTLYRIASMINEYGASAAAAAKVLVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    +        ++  +E++++   G   + L  PVL  A  +S+       
Sbjct: 61  IVVLTFPMSVLLGALMAFGRLSAASEIIVMRAGGQHFVRLAMPVLVAAFFISLGTTAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNP-NNTLQGIF 174
            + P+  +   ++  +          +E++  +      I       +Y+      + I 
Sbjct: 121 FVVPRANNAYNRIINEEIRHHALPVSQEHVIIKNVHGQNIYGLLYARQYDGTEKEFRDIT 180

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTES 232
           + +    +  ++  A       + +  I++ G ++  S        M F  +        
Sbjct: 181 VQEFEQDRLVRVEKADRAK--WNGKKWIVHQGSIYDVSSNDNTSRTMTFENQELPFMQRP 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                   K  +  +  L              +   + E + R    L  ++  LI    
Sbjct: 239 EKVQEAQKKPEELTIREL-RQQIRVLTAHGVDVNKLKVEMYNRFALPLASLVCALIGAPL 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSI 349
             +    +QR      F    ++  +++    +   +       P    FL    C S  
Sbjct: 298 GLQ----KQRGSSSIGFGISVVTIFIYYSIMTLADALGNGGTIAPAAAAFLPDIICGSVG 353

Query: 350 FLLMIKK 356
             LMI+K
Sbjct: 354 IFLMIRK 360


>gi|159903539|ref|YP_001550883.1| putative permease [Prochlorococcus marinus str. MIT 9211]
 gi|159888715|gb|ABX08929.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
          Length = 401

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 131/369 (35%), Gaps = 21/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  V  +   +  +  S    NI +++    IP  L
Sbjct: 31  LLDRWLLGELIPPLLFAISAFTVVSLSVGVMFDLVRQIVESGLPFNIAIQVFLLRIPGFL 90

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G S   +I P + LA+L++   FI  N I
Sbjct: 91  VLSFPMAMLMATLLAYSRLSSNSELKALRSLGVSTKRMIAPAMALALLITSITFIFNNSI 150

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL--------------YIKISKYNPN 167
            P      + +   +      + + E++ F     +                   K +  
Sbjct: 151 VPISNRNSEYILQNSLGKAISNQIGEDIIFSRKGRIDGLKDEKKRKSLTHLFYAGKIDK- 209

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           N +  + ++D       ++  A     +  +      DG +   SP + + +  KF+SY+
Sbjct: 210 NKISKLTLLDFSKKGYTQMIVANKALWNESKGIWDFIDGMMLTLSP-TGNTTTTKFQSYS 268

Query: 228 LQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLFPVI 284
               +      +I   AND  +S  L            +     R    ++ T  +  ++
Sbjct: 269 YPLGTGPIKIGSIPKDANDMTVSEALKAEQLYLKSGNIKEARRMRVRIQEKFTLPMACIV 328

Query: 285 FGLISIVAADKRALVR-QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           FGLI      K +    + +        + I + + + FS +       P++     +FL
Sbjct: 329 FGLIGSTLGAKPSTTTSRSQGFGVSVFLILIYYVLSFSFSSLGVSGALTPFFAAWTPVFL 388

Query: 344 FCISSIFLL 352
                 FLL
Sbjct: 389 SLAGGAFLL 397


>gi|307728896|ref|YP_003906120.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
 gi|307583431|gb|ADN56829.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
          Length = 365

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 131/363 (36%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGMFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTST-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  +++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES     
Sbjct: 181 NGKLNVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVRIESQPVVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    L+ L NP   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGTPTLTLLRNPTKENL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    S+I          + IL++ +  I +    +  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVILHVIVAGIVAFIFWLRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|91782195|ref|YP_557401.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
 gi|91686149|gb|ABE29349.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
           LB400]
          Length = 365

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 132/362 (36%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTEN 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTDDNL-----------AEFAWRAGLPLIALNLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|77457217|ref|YP_346722.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
 gi|77381220|gb|ABA72733.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 373

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 129/356 (36%), Gaps = 26/356 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   ++       L  I GY +P  + ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVIIMSGRFIKYLAQAAAGQLDPGSLFLIMGYRLPGFMQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L +  LF A L+++ +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLFRMTLFPATLVAVVVAWLSLSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIVD-----S 178
            +  + L  K      F  LE   F  L D   +      + +   L  +FI       +
Sbjct: 125 ANQFQLLLNKQDALTEFDTLEPGRFQALRDGTRVTYTETLSDDRVNLGSVFISQKNLGAN 184

Query: 179 RDTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +  +   +  A+ G   +  D    +IL++G  +  SP   +   + +++Y +     + 
Sbjct: 185 QKDRGISVLVAEKGRQEVRPDGNRYLILDNGYRYDGSPGQANYRAIHYETYGVLLPKPDV 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  V   +    S LL  +              ++E   RL+  L   I  L+++     
Sbjct: 245 SEEVTDRDAMPTSSLLGSDD----------IRSKTELQWRLSLPLLVFIVTLMAVP--LS 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           R   RQ + +  +   L   +  +           +     P L   L+ + +IFL
Sbjct: 293 RVNPRQGRFLKLLPAIL--LYMAYLTILIAARGALEKGKIPPAL--GLWWVHAIFL 344


>gi|260363481|ref|ZP_05776317.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|308112551|gb|EFO50091.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
          Length = 348

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 121/340 (35%), Gaps = 26/340 (7%)

Query: 21  LFIVFIAWVIQ-ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            F++F+ +V Q  +  +   S       ++  I G  +P +  ++ P    +        
Sbjct: 1   FFVLFLVFVSQKFISVLADASDGDIPAGLIFSIVGLNMPAMGLLMLPLSLYIGILITFGR 60

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +   +E+++++ TG     L++  L+LA++ S     +   + P  +  ++ L  +    
Sbjct: 61  LYAESEIVVMNATGIGNKFLVQAALYLALITSGVAAFNALWLSPWSQDRVEHLYEQVAAE 120

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSIDL- 196
            +   L++  F    D   +       ++TL  +F+   R   +    + ++ SG +   
Sbjct: 121 NSVDLLKKGQFQGTPDGSSVVFIDDIKDSTLSNVFVAQMRPRDSVLPSVMFSSSGEVKEL 180

Query: 197 --DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL-NP 253
              RQ I + +G  +   P   +  I KF  Y                     + L+ +P
Sbjct: 181 SDGRQVITMQEGTRYEGVPTRVEYMITKFDEYEGVIGQREVKQKGRDWEAYPTADLIGHP 240

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
           +P             ++E   R++     +   L++++     A+  ++ +   +  ++ 
Sbjct: 241 DPE-----------AQAELQWRISL-FVCI--PLLTMLVIPLSAVNPRQGRFAKMGPAIL 286

Query: 314 ISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISS 348
           I    F   S     +E           PI  + L     
Sbjct: 287 IYLAYFLAISATKSALEDGAIPAAIGMWPINAMLLIVAIM 326


>gi|169634642|ref|YP_001708378.1| hypothetical protein ABSDF3307 [Acinetobacter baumannii SDF]
 gi|169797503|ref|YP_001715296.1| hypothetical protein ABAYE3539 [Acinetobacter baumannii AYE]
 gi|184156573|ref|YP_001844912.1| permease [Acinetobacter baumannii ACICU]
 gi|213155683|ref|YP_002317728.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|239502071|ref|ZP_04661381.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB900]
 gi|260556395|ref|ZP_05828614.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|301512956|ref|ZP_07238193.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB058]
 gi|301594832|ref|ZP_07239840.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB059]
 gi|169150430|emb|CAM88327.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|169153434|emb|CAP02576.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
 gi|183208167|gb|ACC55565.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193076099|gb|ABO10703.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213054843|gb|ACJ39745.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|260410450|gb|EEX03749.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
          Length = 366

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 128/355 (36%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAK 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E+   
Sbjct: 181 EGKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKD 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +   +  L    N+P          RSE   RL      +I  ++S+  ++ 
Sbjct: 241 VKFESGDVEALSTSKLFSKANDPVV--------RSELGWRLFGPFTIIIALMLSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     +    +       I K E + +  P+  L     +++F
Sbjct: 293 SPRQGRYYRLIPSIFIFASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 347


>gi|256829583|ref|YP_003158311.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578759|gb|ACU89895.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 392

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 130/369 (35%), Gaps = 21/369 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + + +G    +S    + +  + ++LQ  +L      +   L+K+  YL P  L 
Sbjct: 6   LLQRELFKEMGIVASISLGGFLSLILLGRLLQLRDLFMGQGVTFFDLVKLFTYLSPFFLI 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    +        M  + EL+ +   G S   L+   L L +L S           
Sbjct: 66  MLIPVSCMLGVFLTFLRMGADRELISLRAGGVSLWPLLPAPLLLCLLCSALTVWISLSGI 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDT 181
                  +    +     T   ++  +F      L +   + +P    L  +F++DS  +
Sbjct: 126 SWGMDNFRNTVVELARNKTSVNVQPGVFNTSFPGLTVYARQSDPGSGALLDVFVLDSSRS 185

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--- 234
           +T     A  G I+ D +     + L DG V+R+     ++S++ F+SY L  +      
Sbjct: 186 KTRATIVAPLGRIESDSERGQVFVRLEDGHVYREQ--GGELSVISFESYILSLDMTRLLG 243

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS--EFHKRLTQWLFPVIFGLISIVA 292
              +  KA  +     L     +      +    R   E HKR +     ++   +   A
Sbjct: 244 GFELKDKAPKEMSWDDLRTLKGDGFEDRSVNFQRRVDIELHKRFSLPAACIV---LGFFA 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-----FCIS 347
                  +  K+   +   L   F +++ F      + +     P L L+L        +
Sbjct: 301 LPLAFFFQGMKRQFGLIACLGT-FFLYYVFLSGGMALAEGGIIAPALALWLPNVVFMLAA 359

Query: 348 SIFLLMIKK 356
            I + ++  
Sbjct: 360 GIGMWLVAA 368


>gi|254481219|ref|ZP_05094464.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
 gi|214038382|gb|EEB79044.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
          Length = 369

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 121/363 (33%), Gaps = 22/363 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +    +     ++ I    + ++ +   +    +  IL+ +  Y +P  
Sbjct: 1   MKIL-RYLALDVLVHMVAVSFVLLVIIISGRFVKYLAEAAVGDLAAGILVPVLLYRLPGF 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    +        +   +E++I   TG S   L    L  A+L+ + +      
Sbjct: 60  MELIIPLGLFIGILMSYGRLYVESEMVIFTATGISPQRLAGYTLVPALLVMVIVGGLSLF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVD-S 178
           I P   +  + L    + +   + L    F  R  +D+       + N  +  +F+    
Sbjct: 120 ISPLGAARSEALLHAPESSQGINALAAGRFQTRRSNDMVSYAQAVDANGVMHSVFLSQAE 179

Query: 179 RDTQTHKI---YYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           R+           A  G +  D     + + L +G  +   P   D  ++ F+ +     
Sbjct: 180 REDDGELTMLLTIASEGEVKFDSATGARYLELRNGVRYVGYPGDLDYQVVSFEQFGELIP 239

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                       D   +  L           ELLE  ++  H RL+    PV+  +++I+
Sbjct: 240 EPEGGVRTADPVDGRTTAHL--------LSSELLED-KAALHWRLS---IPVMVPIVAII 287

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A        +R +   +  +  +  G     +     I         ++       ++ L
Sbjct: 288 AMCMSHTNHRRGRYIKMAPAFILYLGYLTLLANARSGIASGEGGTVNIWAVHALFLAVAL 347

Query: 352 LMI 354
            M+
Sbjct: 348 AML 350


>gi|330818019|ref|YP_004361724.1| Permease, putative [Burkholderia gladioli BSR3]
 gi|327370412|gb|AEA61768.1| Permease, putative [Burkholderia gladioli BSR3]
          Length = 363

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 137/367 (37%), Gaps = 22/367 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ I     +++ +   +S   S   +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTIMLTSMMIRIVGYAASGQVSPKDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+      +    VLT   +++E+++   +G S   LIKP+   A  + + +     +  
Sbjct: 62  MILVGTLFVSILFVLTRWYKDSEMVVWLASGVSLTRLIKPIGVFATPIILLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F      +    I K + +   +Q +F+  +  
Sbjct: 122 PWSNQQSKLIKARFQQRDEVSLLAPGQFRESPSTNRVFFIEKMSADQAAVQNVFVTTTEQ 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + +     + I+L +G  +   P   +  IM+F+ Y ++ +S    T 
Sbjct: 182 GKVNVVVSQTGHTETAQNGDRFIVLENGRRYDGVPGQPNFKIMQFERYGVKIQSKQVVTQ 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +   L  L +P   N            +EF  R+   L  +   +++I  A     
Sbjct: 242 PTTTSTPTLDLLRDPTDENL-----------AEFAWRVGLPLIAINLMILAIPLA---YQ 287

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLLMI 354
             +R +   + +++ I        + +  +IE+        + +L+L +  I +    M 
Sbjct: 288 NPRRGRTVNLVMAVLIYLTYSNLLNVMQSQIERGKIPFGVGLVVLHLVVAGIVAFLFWMR 347

Query: 355 KKKYTKI 361
            +    I
Sbjct: 348 VRNRPLI 354


>gi|170692022|ref|ZP_02883186.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
 gi|170143306|gb|EDT11470.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
          Length = 365

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 132/363 (36%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +        +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAAQGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTRFIKPIGMFATPIIILICFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKMIRARFQQRDEVSLLAPGQFRESASSHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ ES     
Sbjct: 182 GKV-NVVVSKNGHTETHKNGDRFVVLENGRRYEGEPGHPDFRIMEFERYGVKIESQPVVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    L+ L NP   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGTPTLTLLRNPTQVNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    S+I          + IL++ +  I +    +  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFALGLVILHVIVAAIVAFIFWLRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|37522902|ref|NP_926279.1| hypothetical protein gvip459 [Gloeobacter violaceus PCC 7421]
 gi|35213904|dbj|BAC91274.1| ycf84 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 139/374 (37%), Gaps = 24/374 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           +K  +LY++  +   FL        +  ++  L + +  +  +  S+ +  ++    +P+
Sbjct: 14  LKIVDLYLVSELLLPFLFGVATFASLGMIVGSLFELVRAMLDNGLSVTVAAQVFALRLPS 73

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+ +  P    + T      ++ + E + +   G S   L+ P L + +L++   F+   
Sbjct: 74  VIVITFPTAMLLATLLAYARLSGDAETVAMRACGMSVYRLVLPALAVGLLVTGATFMCNE 133

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENL------FFRLDDDL--------YIKISKYN 165
           ++ P   +   +L  +A       + ++N+      F    D               ++ 
Sbjct: 134 LVVPASNAEASRLLFQAIDRDKPDFQKDNIIYPEYGFVTPRDGRPTYHTLVRLFYARQF- 192

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
               ++ + ++D      +++  A +   D    +  L DG V+  +P     ++++FK 
Sbjct: 193 AGGIMRELTVLDYSQDAINQVITAAAAVYDNRSGSWTLQDGTVYVVAPDGSYRNVLRFKR 252

Query: 226 YTLQTESANSS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             ++            +  D  ++ L +        + ++  T +    ++    +   +
Sbjct: 253 QQVKLSERPEQFGGGARPEDLPIAQLSDYIRRLELSQQQV-RTLQVSLQQKYAIPVTCFV 311

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLF 342
           F L+      +R    +      + +S+ I FG +    ++   + Q     P L  +  
Sbjct: 312 FALVGATLGLRRV---RTSNALGLGLSILIIFGYYL-LMFVAQALGQTGVIAPWLGAWAP 367

Query: 343 LFCISSIFLLMIKK 356
                ++ +L++ +
Sbjct: 368 NLATGALGVLLLWR 381


>gi|312795337|ref|YP_004028259.1| hypothetical protein RBRH_03151 [Burkholderia rhizoxinica HKI 454]
 gi|312167112|emb|CBW74115.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 365

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 140/370 (37%), Gaps = 32/370 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E  + R +  +     L ++ +     +++ +   +S       ++ + G  + + + 
Sbjct: 2   ILERSLQRELAYTAGAVFLVLLTLVLTTMMIRIVGFAASGQIDPRDVVVLIGLTMISYVA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   R++E+++  + G S   LIKP+   A  + + +     +  
Sbjct: 62  VMLIATLFVSILFVLTRWYRDSEMVVWLSCGVSLTRLIKPIATFAAPIVVLIAFFAFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K +  + Q     S L    F     +     I K +P+   ++ +F+  + +
Sbjct: 122 PWANEQSKLIRERFQQRDEVSLLAPGQFRESAANHRVFFIEKMSPDQGRVENVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +++G  ++       ++L +G  +   P   D  IM+F  Y ++ +S     
Sbjct: 182 GKV-NVVVSKTGHTEIHPNGDRFVVLENGRRYDGEPGKPDFRIMEFARYGVKIQSRQLVN 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +    + L  PNP           T+ +EF  R    L  +   L++I  A    
Sbjct: 241 RPTTTSLPTATLLREPNP-----------THLAEFAWRAGLPLTALNLMLLAIPLA--YQ 287

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIP---ILYLFLFCISSI 349
             R+ + I+     L ++  ++  +S +++ ++         ++P    L++ +  I   
Sbjct: 288 NPRRGRTIN-----LVLAVLIYLTYSNLMNLVQAWIEQGKVAFVPGLLGLHVIVSAIVVF 342

Query: 350 FLLMIKKKYT 359
              +  +   
Sbjct: 343 VFWLRVRNRP 352


>gi|145641036|ref|ZP_01796617.1| predicted permease [Haemophilus influenzae R3021]
 gi|145274197|gb|EDK14062.1| predicted permease [Haemophilus influenzae 22.4-21]
          Length = 336

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 121/325 (37%), Gaps = 20/325 (6%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +   ++     +++  + G  +PT+  ++ P C  +        +   +E+ ++   
Sbjct: 1   MRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLYAESEITVMRAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G  +  L+K  L +++L +     +   + P        +   A+   T   L    F  
Sbjct: 61  GVGQRILVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFIS 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDS--RDTQTHKIYYAQSGSID---LDRQAIILNDGE 207
            +++  +       +N ++ +++     +      +  A+ G +       Q + L + +
Sbjct: 121 TNNNNVVLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTK 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + +  D  I  F  Y       ++     +  +  LS L++ + ++          
Sbjct: 181 RVEGTSVLPDFRITHFDEYQAYLGYQSAENTNDEVAELTLSQLIDLDSSSA--------- 231

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK--KIHPIFISLSISFGVFWGFSYI 325
            ++E H R+T  L   +  LI++     R   RQ +  KI P  +   I F +   F   
Sbjct: 232 -KAELHWRITLILAVPLMALIAVP--LSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSA 288

Query: 326 IHKIE-QNPYYIPILYLFLFCISSI 349
               + +    IP++ +  F ++ +
Sbjct: 289 GSAGKLEAELLIPLVNIGFFLLAVV 313


>gi|254447192|ref|ZP_05060659.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
 gi|198263331|gb|EDY87609.1| permease YjgP/YjgQ family protein [gamma proteobacterium HTCC5015]
          Length = 353

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 140/366 (38%), Gaps = 24/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y++R + +S     L ++ +     ++Q ++  +    +   +  +    +   
Sbjct: 1   MHITDRYLIREVAKSSAAVLLVLLVLMVGNTLVQLLSDAADGNMAPQYIWPLLVITLANY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +       +        + ++ E+  +   G       +P+  +AI +S+   +    
Sbjct: 61  LVLFMGLSLYLGGMLAFGRLYKDAEMAAMVACGMGPWDFFRPLFKVAIPISLAGLVLSVF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       + ++ A+     ++L E  F  L + ++    +      L  +F+  SRD
Sbjct: 121 ILPWMAGLQAKFTSDAEKPSVETHLREGEFNELGNGIFFV--EEQSGGALSQVFVY-SRD 177

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                I  A+SG ++       + L  G +++ +   + I  ++++ Y +  ES N+   
Sbjct: 178 PSGESIQVAESGRVEDAPSGYELTLQQGRLYQINTE-QRIRDIRYQEYEVMVESPNAVVD 236

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    S L+  +               +E+  RL+    P+   L++++A      
Sbjct: 237 EQVLAATQTSDLMRSDNPLEV----------AEWQWRLSV---PIGCLLLAVLAFPLSYT 283

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIK 355
             ++     +  ++ +   ++  F  +   + QN   P ++ + +  L  ++ I  L+++
Sbjct: 284 SPRKGAFSKLGYAILVYI-LYSNFLSLGRSLVQNQEVPLWLGMWWAHLPVLALIIGLLLR 342

Query: 356 K-KYTK 360
           +  + +
Sbjct: 343 RYGWPR 348


>gi|209526011|ref|ZP_03274544.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
 gi|209493537|gb|EDZ93859.1| permease YjgP/YjgQ family protein [Arthrospira maxima CS-328]
          Length = 392

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 130/379 (34%), Gaps = 30/379 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI++ +   F+        +   V  + + +  V+ S   +++  ++    +P 
Sbjct: 19  LSVLDRYIIQELIPPFIFGVGLFTSVAVTVGTVFELVRRVAESGLPVSVAFQVFLLKMPD 78

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + T  V   ++ ++EL+ I + G S   L+ P +  +  ++   F    
Sbjct: 79  FMVLAFPMSMILTTLMVYGRLSSDSELIAIRSCGISLYRLVIPAIIFSFFVTGMTFAFNE 138

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYN 165
           II P           KA      +    N+FF   + +                   ++ 
Sbjct: 139 IIVPAANFQATITLQKALNEDALNIRSTNIFFPEYERVSVEGTNRRVNVLRRLFYAEEF- 197

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            +  + G+ I+D       +I  +++   + +       +G V+   P     +I +F  
Sbjct: 198 ADGKMSGVTILDRSRAGITQIISSRTAIWNPEESTWDFYNGTVYIVDPDGSYRNIARFDH 257

Query: 226 YTLQTE--SANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
             L       + ++      + N++     L     + +    L    R +  ++     
Sbjct: 258 KQLYLSRVPLDLASQDRDYGEMNIAQTKEYLELMKLSGDQAKILKTKVRIQ--QKYALPF 315

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             V+FGL+      +     +  +     IS+ I F  +   S+I   + Q     P + 
Sbjct: 316 VCVVFGLLGSSLGSRPG---RTNRATSFGISVMIIFAYYL-LSFITGAMGQKGILSPFMA 371

Query: 341 LFL---FCISSIFLLMIKK 356
            +L     +     L+ + 
Sbjct: 372 AWLPTMLGLGVSGFLLYRS 390


>gi|241761653|ref|ZP_04759740.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260754018|ref|YP_003226911.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283856464|ref|YP_163128.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373961|gb|EER63494.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258553381|gb|ACV76327.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283775468|gb|AAV90017.2| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 403

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 121/359 (33%), Gaps = 12/359 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y++R I    + + +    +  + ++L+  + V++    ++++ ++   ++P  + +
Sbjct: 7   IDRYLIRLITVPLVTTLIVSAMLMVLDKMLKLFDFVANQGGPVSVVWRMLANMLPEYMSL 66

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    +        +   +EL +    G S   L++     A   ++        IEP
Sbjct: 67  GIPIGLTLGILLAFRKLALQSELDVFRAVGISYSRLLRIPYIFAFFFALVNLAIVGYIEP 126

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI-SKYNPNNTLQGIF-IVDSRDT 181
                 + L  + +     + ++   F +L   + +++    +    L GIF   ++ + 
Sbjct: 127 YSHYAYEDLRYELRSGALGAAIKVGEFTKLGTHMTLRVEGSQDSGRNLSGIFGTSENPEN 186

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  A +G            + LN G +    P      ++ F+++ +  +     +
Sbjct: 187 GQKLTVTADNGRFMPSDDPNVILLRLNHGLLIHNRPDFTTPRVLTFENHDMPIKLPAVES 246

Query: 238 IVLKA---NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +     +  L+ L     +  +   +L    ++  H RL +     +  ++++  A 
Sbjct: 247 FRGRDGNQQEMTLTELFFIL-HQKHLPKKLRNQLQANLHFRLVEVATMFLLPMLALTLAI 305

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R    +      L +                     + +++L     S +   M
Sbjct: 306 PPK--RSTSSLGVFLSILILVTDHKLNQYCQTIGGLGKINPVLMMWLPFILFSLLVWRM 362


>gi|282897128|ref|ZP_06305130.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
 gi|281197780|gb|EFA72674.1| permease YjgP/YjgQ [Raphidiopsis brookii D9]
          Length = 391

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 131/369 (35%), Gaps = 18/369 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   +  + + +  V  S   +NI LK+    +P V
Sbjct: 19  SIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKLPYV 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ +   G S   ++   + L+ L++   ++    
Sbjct: 79  MVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRMVLTAVLLSGLVTGMTYVFNEY 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF------RLDDDLY-------IKISKYNPN 167
           I P           +A  +   S+ +EN+++      +  D              +++  
Sbjct: 139 ISPAANYEASITLEQALKSDQPSFKQENIYYPEYREEKTKDGGTSRLLARLFYADEFD-G 197

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++G+ I+D      ++I  ++S   +  +Q     +G ++  +P     +I++F+   
Sbjct: 198 KKMKGLTIIDRSKAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQQ 257

Query: 228 LQTESANS--STIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           L+  S     +       + N++  L           P+ ++       +++      +I
Sbjct: 258 LKLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICII 317

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+            + +      I + I + +      +      +P+    L     
Sbjct: 318 FGLVGSAMGTIPQRTGRGRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGAWLPNLCG 377

Query: 345 CISSIFLLM 353
               I +LM
Sbjct: 378 LGMGIVILM 386


>gi|197336301|ref|YP_002155170.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
 gi|197317791|gb|ACH67238.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
          Length = 344

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 110/316 (34%), Gaps = 22/316 (6%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
            ++L + G  +P +  ++ P    +        +   +E+ +++ TG     LI+  L+L
Sbjct: 20  GLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYL 79

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYN 165
           A++       +   + P  +    QL    +       L++  F R  D    + I   +
Sbjct: 80  ALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQKGQFQRSPDGKAVVFIDDIS 139

Query: 166 PNN--TLQGIFIVD--SRDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDI 218
             N   L+ IF+      D+    +  A  G    +   RQ + L DG  +   P   D 
Sbjct: 140 NKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQVLELQDGTRYEGIPTRLDY 199

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
               FKSY +              +      L+                 ++E   R++ 
Sbjct: 200 LESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLM----------KRPELEAKAELQWRISL 249

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            +  +   L+++V     A+  ++ +   +  ++ +    F   S       ++    P 
Sbjct: 250 -IICI--PLLTMVVVPLSAVNPRQGRFAKLGPAVLLYLAYFLSLS-AGKSAIEDGGLAPS 305

Query: 339 LYLFLFCISSIFLLMI 354
           + L+    + + + +I
Sbjct: 306 IGLWAINATLLLVGII 321


>gi|59711021|ref|YP_203797.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59479122|gb|AAW84909.1| conserved inner membrane protein [Vibrio fischeri ES114]
          Length = 344

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 108/313 (34%), Gaps = 22/313 (7%)

Query: 47  NILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFL 106
            ++L + G  +P +  ++ P    +        +   +E+ +++ TG     LI+  L+L
Sbjct: 20  GLILSLVGLNMPAMGLLMLPLSIFIGILLTFGRLYAESEITVMNATGMGNSILIRAALYL 79

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYN 165
           A++       +   + P  +    QL    +       L++  F R  D    + I   +
Sbjct: 80  ALITGAAATFNSLWLSPWSQEKTTQLMETVESDAGVDLLQKGQFQRSPDGKAVVFIDDIS 139

Query: 166 PNN--TLQGIFIVD--SRDTQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDI 218
             N   L+ IF+      D+    +  A  G    +   RQ + L DG  +   P   D 
Sbjct: 140 NKNGKELRHIFLAQPVPHDSLRPSVLVADKGVVKELKDGRQVLELQDGTRYEGIPTRLDY 199

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
               FKSY +              +      L+                 ++E   R++ 
Sbjct: 200 LESNFKSYEVLIGQKEVKEKRRDWDAIPTLDLM----------KRPELEAKAELQWRISL 249

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            +  +   L+++V     A+  ++ +   +  ++ +    F   S       ++    P 
Sbjct: 250 -IICI--PLLTMVVVPLSAVNPRQGRFAKLGPAVLLYLAYFLSLS-AGKSAIEDGGLAPS 305

Query: 339 LYLFLFCISSIFL 351
           + L+    + + +
Sbjct: 306 IGLWAINATLLLV 318


>gi|261253953|ref|ZP_05946526.1| predicted permease [Vibrio orientalis CIP 102891]
 gi|260937344|gb|EEX93333.1| predicted permease [Vibrio orientalis CIP 102891]
          Length = 368

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 127/359 (35%), Gaps = 27/359 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +     
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGLIAGFNSFYFA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDS--R 179
           P  +  + QL  + +   +   L++  F    D    + I   +    L+ +F+     R
Sbjct: 122 PYSQDKLVQLQEEVEAENSVDLLKKGQFQGTPDGSSVVFIDDID-GKQLKHVFVAQMRPR 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+    + ++QSG +      RQ I + DG  +   P   D  + +F  Y       +  
Sbjct: 181 DSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTEFDQYEGLIGQRDVQ 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                        L+ NP+P             ++E   R++     V   L++++    
Sbjct: 241 RKGRDWEALPTMDLMKNPDP-----------RAQAELQWRIS---LVVCIPLLTMLVVPL 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP-----YYIPILYLFLFCISSI 349
            A+  ++ +   +  ++ I    F   S     +E           PI    L     I
Sbjct: 287 SAVNPRQGRFAKMGPAILIYLAYFLSISATKSALEDGTIPTMVGMWPINAALLLTALGI 345


>gi|296162276|ref|ZP_06845070.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
 gi|295887430|gb|EFG67254.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
          Length = 365

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 132/362 (36%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSPDQARVENVFVTSTEN 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PTTTGTPTLTLLRNPTNDNL-----------AEFAWRAGLPLIALNLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|260771005|ref|ZP_05879934.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|260614242|gb|EEX39432.1| predicted permease [Vibrio furnissii CIP 102972]
          Length = 347

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 116/338 (34%), Gaps = 19/338 (5%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +  +    + ++ +   S       ++L I G  +P +  ++ P    +        + 
Sbjct: 1   MLFLVFLSQKFIRVLADASDGEIPARLILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLY 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
             +E+ +++ TG     LI+  L+L ++ S     +   + P  +  ++ +  +     +
Sbjct: 61  AESEITVMNATGIGNKFLIRAALYLGVITSCLAGFNALWLSPWSQDKVQSVMEQLAAENS 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RDTQTHKIYYAQSG---SIDL 196
              L++  F R  D   +       N  L  +F+     R++    + ++ +G    +  
Sbjct: 121 VDLLQKGQFQRSPDGSSVVFIDNIENKKLSNVFVAQLTPRESILPSVMFSDAGDVKELSD 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
            RQ I + +G  +   P   D  + KF  Y                       L+     
Sbjct: 181 GRQVITMYNGTRYEGVPTRVDYMVTKFDEYEGLIGQRAVKEKGRDWEAIPTLELI----- 235

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                     + ++E   R++     V   L++++     A+  ++ +   +  ++ I  
Sbjct: 236 -----KNADRSAQAELQWRIS---LVVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYL 287

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             F   S       ++     I+ ++    + +   +I
Sbjct: 288 TYFLAIS-ATKSALEDGSIPAIVGMWPINAALLISAII 324


>gi|186476977|ref|YP_001858447.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
 gi|184193436|gb|ACC71401.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
          Length = 370

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 129/363 (35%), Gaps = 18/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+P+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLASGVSLARFIRPIGVFATPIIILIAFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K +P+   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESAASHRVFFIEKMSPDQGHVENVFVTSTEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  +++G  +  +     ++L +G  +   P   D  IM+F+ Y ++ +S    +
Sbjct: 182 GKV-NVVVSKNGHTETHKNGDRFVVLENGRRYDGEPGHPDFRIMEFERYGVKIQSQPVVS 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKR 296
                    L    +P   N            +EF  R    L  +   L++I  A    
Sbjct: 241 TPTTTGTPTLDLFRDPTRQNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNP 289

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  + I L+ S  +    S+I          +  L++ +  I      +  +
Sbjct: 290 RRSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFGVGLVGLHILVALIVVFIFWLRVR 349

Query: 357 KYT 359
              
Sbjct: 350 NRP 352


>gi|262376976|ref|ZP_06070202.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
 gi|262308014|gb|EEY89151.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
          Length = 366

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 126/355 (35%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  I          
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVMNGSGVSRHQLARLLVPMTLVFLIAQAGLMLWAA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDT 181
           P      + L+    +   F  +    F        I     + +   L+ IF     + 
Sbjct: 122 PWGIRQFEALTTSQAVRTGFDLVRPKEFISSGP-YTIYAGDLSEDRKNLKDIFFYQRAEK 180

Query: 182 QT--HKIYYAQSGS---IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +     +  AQ  +   +  D   ++ L +G  +   P +   +  +F+SY L+ ES   
Sbjct: 181 EGKPDVMILAQEATRIEVPNDAANVVDLVNGRRYEIYPGTPQYTQAEFESYRLRLESDEE 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +       +   +  L  N  +P           SE   R+      +I  ++++  ++ 
Sbjct: 241 AQFASTEVEALPTSQLWQNRQDPVVA--------SELGWRVFVPFAILIALILAVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  K+ P  +  +            I K E   +  P++ +      ++F
Sbjct: 293 SPRQGRYLKLFPALMIFASLIVALMAVKTRISKEEMGIWAYPLILIAYAIAGALF 347


>gi|293390144|ref|ZP_06634478.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950678|gb|EFE00797.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 372

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 125/357 (35%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 6   ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++L S     +   + 
Sbjct: 66  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWLT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDS--R 179
           P       ++   A+       L    F   ++ D  + I     NN +  +++  +  R
Sbjct: 126 PWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDI-QNNQINNVYVFQTQPR 184

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+ G +       Q + L + E    +    D  I  F  Y         +
Sbjct: 185 GQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVN 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +A + +LS LLN                ++EFH RLT  L   I  L+++     R
Sbjct: 245 DDSAEAEELSLSQLLN----------TKTPAAKTEFHWRLTLILAVPIMALLAVP--LSR 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              RQ +    +   L          S               + L       + +L+
Sbjct: 293 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILL 349


>gi|299771880|ref|YP_003733906.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
 gi|298701968|gb|ADI92533.1| permease YjgP/YjgQ family protein [Acinetobacter sp. DR1]
          Length = 366

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 128/355 (36%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRATK 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E+   
Sbjct: 181 EDKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKD 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +   +  L    N+P          RSE   RL      +I  ++S+  ++ 
Sbjct: 241 VKFESGDVEALSTTKLFSKTNDP--------VIRSELGWRLFGPFTIIIALMLSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     S    +       I K E + +  P + +     +++F
Sbjct: 293 SPRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 347


>gi|77165379|ref|YP_343904.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|254433097|ref|ZP_05046605.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
 gi|76883693|gb|ABA58374.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|207089430|gb|EDZ66701.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
          Length = 381

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 111/320 (34%), Gaps = 19/320 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL+ +  +     L ++ I   I+ ++ ++  +        +L +SGY     L 
Sbjct: 6   IVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATEGKVPGEAILALSGYEAIGALV 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  M  + E++ +   G SR  L++ VL   + L+I +      + 
Sbjct: 66  LLLPLASFLAVLLALGRMGADNEVIALFACGVSRGHLLRVVLTFGLALAIGVGGISLYLG 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P   +   +L  +A LA   S L    F                 +   ++ +FI    +
Sbjct: 126 PAASAEGYRLKQQALLAAETSGLVAGNFKEAQHGQRVFYAESLTEDGLGMKNVFIQVW-E 184

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +  A  G +  D     + +IL DG  +        + I  F+ + +  +   + 
Sbjct: 185 PTQKTLLRAARGHLQTDEATGDKYLILEDGYRYELMGEEVGVRIFSFERHGILVKKGGAQ 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++        L                   +E   R++  +  ++  ++++  A  R
Sbjct: 245 EFRIRHQTLPTLTLWEMGAP----------KDIAEVQWRISMPIITLLLVMLAVPLA--R 292

Query: 297 ALVRQRKKIHPIFISLSISF 316
           +  RQ +    +   L    
Sbjct: 293 SGPRQGRYAGLVPAVLVYVI 312


>gi|260221417|emb|CBA29959.1| hypothetical protein Csp_A14760 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 367

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 145/360 (40%), Gaps = 16/360 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   I + +GRSF  + + +V +   + +L+ +   S  T +   +L I GY + + +P
Sbjct: 2   LFHSSIRKELGRSFGATLVVLVTVVMTMTLLRTLGEASRGTFNPADVLIIMGYTVLSDMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +   +V+T M R++E++I   +G   + L++P++  A  + + +     +I 
Sbjct: 62  TILSMSLFISVLSVVTRMYRDSEMVIWFGSGRGLLGLVRPLMRFAWPVLVVILALAFLIL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P   S I+ L  K       + +E   F    +      I K +    T + +FI  + +
Sbjct: 122 PWSFSKIEDLRDKYDKRGDIARIEPGQFQESGNGDRVFFIEKDSKGQQTGKNVFIA-THE 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                I  A+SG+++     + ++L +G+   +S    D+++  F+ Y  +  + ++S  
Sbjct: 181 GNKETITSARSGTVEVMNGDKFLVLQNGQRLERSSGKNDMTLSTFERYGARVGADDNSAR 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               ++   +  L   P+  +           E   R    L       I + AA     
Sbjct: 241 DYAPSNAKTTLELVQTPSALHM---------GELSWRAGLALAAFNLIWIGLAAAGANPR 291

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +   +   F++  + F +       +   +     IP+L      +  + +L + K++
Sbjct: 292 AGRSTNLIFAFLAFVVYFNLLVLGKNWVENGK--AELIPMLLQLHGGVFLLSMLWLAKRH 349


>gi|293610039|ref|ZP_06692340.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827271|gb|EFF85635.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 366

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 129/355 (36%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +F  +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAK 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E+   
Sbjct: 181 EDKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKD 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +   +  L    N+P          RSE   RL      VI  ++S+  ++ 
Sbjct: 241 VKFESGDVEALSTTKLFSKTNDP--------VIRSELGWRLFGPFTIVIALMLSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     S    +       I K E + +  P + +     +++F
Sbjct: 293 SPRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 347


>gi|257468008|ref|ZP_05632104.1| hypothetical protein FulcA4_01652 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062294|ref|ZP_07926779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313687970|gb|EFS24805.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 362

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 135/366 (36%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI +   +SF +S +  V I  V Q+ + I  VS    S N  +     +IP +
Sbjct: 3   IKIIDKYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSANESITYILTMIPKI 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + +   ++SM  N E++ +   G S   ++   + ++ ++++ +F   + 
Sbjct: 63  LIDVAPLAVLLGSLMTVSSMASNLEIISLKTAGISFKRIVLFPICISAVIAVMVFYINDS 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTL-QGIFIVDS 178
           + P      +++    +        ++N F R ++  Y+  + K N      + I IVD 
Sbjct: 123 LYPYSVRKNREIKDGERAKREMPVEKKNAFLRGENSNYVYLMGKINRETGFGENIEIVDL 182

Query: 179 RD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +   +  +I  A+ G  +  ++  +L D  ++    + K   +  F       E     
Sbjct: 183 NEEFNKVERIITAKEGRYNFSKKVWVLKDANIYDGEKLEKPKEVKIFTENKYDDEPEKFI 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  ++     +  L   +                E   R +      I   + +      
Sbjct: 243 TKSVEPKTLTIKEL-KKSVREIKSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG--- 298

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
              R  +    I ++LS++ G  ++        +  N +  P +  +   +  +      
Sbjct: 299 --SRYVRGASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYF 356

Query: 353 MIKKKY 358
           M + +Y
Sbjct: 357 MYRAEY 362


>gi|262382624|ref|ZP_06075761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295502|gb|EEY83433.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 658

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P  +  +  L    +       + E  F++      + + K +P +  L+ + I D  
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIIL 203
           +     ++  A SG +      + L
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFL 208



 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  Y+   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +  
Sbjct: 378 DEAYK---VRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFI 431

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L    ++ + + +  K
Sbjct: 432 FYYIIDNMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|269797613|ref|YP_003311513.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
 gi|269094242|gb|ACZ24233.1| permease YjgP/YjgQ family protein [Veillonella parvula DSM 2008]
          Length = 363

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 129/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+     + +  +  +       + ++  +  +       +    Y+     L  I 
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYDAETKQLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S  +     MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--IWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIRAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIF 350
              +    +QR      F    +   +++G       + +      +L  L    +  I 
Sbjct: 298 LGLQ----KQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTLLAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|206890381|ref|YP_002249742.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742319|gb|ACI21376.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 351

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 128/357 (35%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK     + R + ++  +S  F+  +  + ++ +   + +S    L  L+ +   L P +
Sbjct: 1   MKVIYKALTRELLQNIGLSIAFLNAVLIIEKLFKLSKIFASVGIDLPNLVLLILLLQPQL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +           + E+ I   +G       KP +++ ++   F  +    
Sbjct: 61  LIFTIPMALLLSILLTYGRTQADNEMTIFMVSGMPYKKTFKPAIYIGLIAFFFTVLMSFY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +++             LEE +F +   D+ I + +   +  L+ + I D R 
Sbjct: 121 LAPTGVSLVREKILTILAERAPLGLEEGVFNQGFKDVTIFVKEKPDSLHLKEVVIFDERK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T KI  A+ G I  +R  I L+             ++ + FK Y  +  S N   I  
Sbjct: 181 NDT-KIVIAKGGLIKKERDNINLSLLNGKAYFNKGLTLNEVSFKEYIFRL-SPNIDPIAK 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K ++ +L  L++          +    Y+ E +KR    L  ++   ++           
Sbjct: 239 KVSELSLFELVSKIQTEEVKAID----YKLELYKRFALPLLCIVSVFLAPSLCLIVGKTG 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   I       +  + +    + +    + +     +L + +  I +  +    +K
Sbjct: 295 RIGGITVGLAIFAFYYILMIYGANLAKAGKVSAEIGSLLPVIVMAILAFTMYTRIRK 351


>gi|89900899|ref|YP_523370.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
 gi|89345636|gb|ABD69839.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 134/361 (37%), Gaps = 15/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   I + + RSF  + + +  +   + +++ +   S  + + + ++ + GY +   +P
Sbjct: 2   LFHSSIRKELARSFGATLIVLATVVMTMTLIRTLGQASRGSFNPSDVMLVMGYTVLAYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  ++G     L+ P+   A  + + +     ++ 
Sbjct: 62  TILTMSLFIAIIATLSRMYRDSEMVIWFSSGKGLAALLGPLFRFAWPVLLVVAALALLVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL--QGIFIVDSRD 180
           P     I+ L  + +       +E   F        +   + +         +FI  + D
Sbjct: 122 PWSNQRIETLKDQYEKRGDIERIEPGQFQESAGGKRVFFVEKDATGKQAGNNVFIATNED 181

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +      A+ G I+   Q   ++L++G+       + D+ I +F+ Y ++      S  
Sbjct: 182 GKETIT-SARRGRIETIGQDRFLMLSNGQRLESVLGTSDLKISEFEEYGIKVGKDVLSGS 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
                +   +  L  N   PN          +E   R+   L  + F +I I  +     
Sbjct: 241 NYVPINTQPTLALFKNQTLPN---------LAELSWRIGLILAAINFVIIGIAVSGVNPR 291

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           + R    +  +F  +     +  G S+I        +++ +++     +  ++L      
Sbjct: 292 VGRSANLVFSLFAFVLYYNLLSLGQSWIASGKFTFGWFLAVVHGGALVLGILWLAKGHNN 351

Query: 358 Y 358
           +
Sbjct: 352 W 352


>gi|294793349|ref|ZP_06758494.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
 gi|294455780|gb|EFG24145.1| membrane protein, YjgP/YjgQ family [Veillonella sp. 6_1_27]
          Length = 363

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 129/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+     + +  +  +       + ++  +  +       +    Y+     L  I 
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLLYAKSYDAETKQLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S  +     MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--IWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIRAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIF 350
              +    +QR      F    +   +++G       + +      +L  L    +  I 
Sbjct: 298 LGLQ----KQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|21673570|ref|NP_661635.1| hypothetical protein CT0740 [Chlorobium tepidum TLS]
 gi|21646682|gb|AAM71977.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 452

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 101/265 (38%), Gaps = 13/265 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F  + + I+F+  +  + Q +  +        I+L++       +
Sbjct: 11  MKIFDRYILKEHLGTFFFAFVTIMFVFILTFLTQFLERLIGKGLDFRIILEVVALQSAWM 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T    +S+  ++EL ++   G S   L+ PVL  A+ LS+ +    N+
Sbjct: 71  VGLAVPMAVLVSTVMAFSSLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERFNNV 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+       L A          +++N F  +     I +   +     L+ I + D  
Sbjct: 131 LMPEANYKANALFADITRMKPGLGIDKNAFSDVIQGYSIMVRDIDNETGELRDIVLYDRG 190

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKS-PISKDISIMKF--KSYTLQT-- 230
                 +  A  G I   +      + L DG++H  S P       M F    Y      
Sbjct: 191 RPDVRTVIMAARGRIQFSQDYSHLVLTLEDGQIHELSLPAMDRYRKMVFARNRYVFDATG 250

Query: 231 ---ESANSSTIVLKANDQNLSFLLN 252
              E  +       + + + + LL+
Sbjct: 251 YGFERTDDGKRRRGSKELSAAELLS 275



 Score = 42.6 bits (99), Expect = 0.084,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            E    Y  E+HK+ +     V+F +I    A    + R         +SL   F ++W 
Sbjct: 350 RESFYNYMIEYHKKYSLAFACVVFAMIG---APLGVMARHGGFGAGAALSL-FFFVLYWV 405

Query: 322 FSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                 KI +    +P +  +L    ++   L MI +
Sbjct: 406 LLIGGEKIAERGLLLPAISVWLPNVVLAVTGLFMIYR 442


>gi|156935580|ref|YP_001439496.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156935598|ref|YP_001439514.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533834|gb|ABU78660.1| hypothetical protein ESA_03444 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533852|gb|ABU78678.1| hypothetical protein ESA_03463 [Cronobacter sakazakii ATCC BAA-894]
          Length = 370

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 127/348 (36%), Gaps = 25/348 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+L  I   ++     
Sbjct: 62  LILPLSLFLALLMTLGRLYTESEITVMHACGLSKAVLVKAAMVLALLTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +    +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATDGNAVLFIESVNGSKFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  FK Y         + 
Sbjct: 182 NARPSVVVADSGELSQRKDGSQVVTLNQGTRFEGTAMLRDFRITDFKDYKAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L   N  +           R+EFH RLT     ++  L+ +       
Sbjct: 242 DPDDAEQMDMKTLWQANSKSA----------RAEFHWRLTLVFAVIVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLF 342
             RQ +      +S+  +  ++  F  +   +  N       P+++++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQTSLRSNGAKGKLDPLIWMW 332


>gi|261867783|ref|YP_003255705.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413115|gb|ACX82486.1| 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 372

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 124/357 (34%), Gaps = 19/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + I +S +     ++ I +  Q+++ +   ++     +++  + G  +PT+  
Sbjct: 6   ILTRYLTKEIFKSQIAILFILLLIFFCQQLVRVLGSAANGKVPADLVFSLLGLGMPTMAQ 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +     L  +   +E+ ++   G  +  L+K VL L++L S     +   + 
Sbjct: 66  LMLPLCLFIAILLTLGRLYAESEITVMRACGVGQPILVKVVLLLSLLTSGVAAYNALWLT 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDS--R 179
           P       ++   A+       L    F   ++ D  + I     NN +  +++  +  R
Sbjct: 126 PWAIHKQTEIVEDAKANPNVGALSAGQFVSANNSDFVLFIDDI-QNNQINNVYVFQTQPR 184

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A+ G +       Q + L + E    +    D  I  F  Y         +
Sbjct: 185 GQSKPSVIVAEKGELKALPNGDQVLNLQNSERFEGTAALPDFRITHFDEYQAYLGHKAVN 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +  + +LS LLN                ++EFH RLT  L   I  L+++     R
Sbjct: 245 DDSAETEELSLSQLLN----------TKTPAAKTEFHWRLTLILAVPIMALLAVP--LSR 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              RQ +    +   L          S               + L       + +L+
Sbjct: 293 VNPRQGRFAKVLPALLLYLIYFLLQSSLKSAGGAGKLDAGLFMPLVNIVFFLLAILL 349


>gi|71738034|ref|YP_273425.1| hypothetical protein PSPPH_1158 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257487386|ref|ZP_05641427.1| hypothetical protein PsyrptA_29203 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289623815|ref|ZP_06456769.1| hypothetical protein PsyrpaN_01510 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649166|ref|ZP_06480509.1| hypothetical protein Psyrpa2_15674 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485819|ref|ZP_07003897.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71558587|gb|AAZ37798.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298159643|gb|EFI00686.1| Putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320322888|gb|EFW78979.1| hypothetical protein PsgB076_20537 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329803|gb|EFW85791.1| hypothetical protein PsgRace4_11121 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867846|gb|EGH02555.1| hypothetical protein PSYAE_11461 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330989713|gb|EGH87816.1| hypothetical protein PLA107_32136 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009018|gb|EGH89074.1| hypothetical protein PSYTB_04815 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 375

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 31/359 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIV------D 177
            +    L  K      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSGD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPE 244

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S  +        S L+ NP P +            +E   R++  L   I  L++I   
Sbjct: 245 ISEEITDREAIPTSELIGNPAPRS-----------VAELQWRISLPLSVFIVTLMAIP-- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
             R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ +  I+L
Sbjct: 292 LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHGIYL 345


>gi|325267813|ref|ZP_08134463.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
 gi|324980694|gb|EGC16356.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
          Length = 374

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 143/368 (38%), Gaps = 25/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   L+    + +   + I+ I    Q +  +   +    +++ +  + G+ +  + P
Sbjct: 2   IYQRQFLKETTITAIAVFVVILAILVFTQGITLLGRAAGGNVAIDAVGTLIGFWVLNLAP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   R++E+ I  ++G      +KPV+  A+ L + + + +  + 
Sbjct: 62  LLLVLTAYISTLTVLTRYWRDSEMAIWLSSGLGLRQWVKPVMTFALPLMLLIAVLQIFVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNP-NNTLQGIFIVDSR 179
           P      ++ +   +     S +E+  F  L   +     + +++     L  +F+ +  
Sbjct: 122 PWAELRSREYAELLKQKQNLSLVEQGKFTELGKKNGRIYFVEQFDAHAGQLNHLFLREIG 181

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN- 234
           D   +++ +A+SG   L+       ++L++G  +  +    D   + FK   L T +   
Sbjct: 182 DDGKNQVIFAESGQFTLEGSDQHRTLVLHNGYRYLGNAGQGDFEQIAFKELRLATNTTPK 241

Query: 235 -SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            ++ I  +     +  L + +P            +++E   R++    P+   ++  +A 
Sbjct: 242 LANPIDHRNTIPTIQLLRSKDP-----------VHQAELMWRIS---LPITVVVLCWLAI 287

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF--WGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  +    + + +++           + Y   K  +  ++  +L +    I   +L
Sbjct: 288 PISYFNPRSGNSYHVLVAVGFFLVYQNSLTWVYGAMKSGKISFWPALLSVHGLTILCAWL 347

Query: 352 LMIKKKYT 359
           LM  +   
Sbjct: 348 LMRVRSLP 355


>gi|260886292|ref|ZP_05897555.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
           35185]
 gi|330839725|ref|YP_004414305.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
           35185]
 gi|260864011|gb|EEX78511.1| membrane protein, YjgP/YjgQ family [Selenomonas sputigena ATCC
           35185]
 gi|329747489|gb|AEC00846.1| permease YjgP/YjgQ family protein [Selenomonas sputigena ATCC
           35185]
          Length = 363

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/369 (13%), Positives = 131/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  +F         +      + +    ++    S   ++K+  + +P 
Sbjct: 3   IRLLDKYIFREVCLAFFFGICGTSAVFVGSGTLFRIAQYITEYGASFGSVVKMFIFSLPA 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +     P    +        ++ ++E+  + + G S   +  PV+ L +++SIF  +   
Sbjct: 63  IAIYTFPMSMLLAALLTFGRLSSSSEITAMKSCGVSFYRIAAPVIVLGVVVSIFSILFTE 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYN-PNNTLQGIF 174
            I P+  +  + + A           ++++  +   D      +   +Y+    TL+G+ 
Sbjct: 123 HIVPRANNAYENVIAYEIQGNAAPKSQDHIVIKEIKDGEMQRLMYARRYDAATETLEGVT 182

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +      Q    Y   +     +     +  G ++  S    + ++ +F    L   +  
Sbjct: 183 LQSF--EQGETKYVQDAAYAKWEGTQWTMYRGAIYEVSGGKSEHTM-RFDKQVLPINAGP 239

Query: 235 SSTIV--LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +    K  +  +  L          +    +   +E ++R+T  +  ++F +I +  
Sbjct: 240 GRIVREQKKPEELTMKEL-RQQIELMRTQFVDTKKLETELYQRITIPMASLVFAIIGVPL 298

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--- 349
             +     +      I +SL I F  +     +   + Q+    P   ++L  ++ +   
Sbjct: 299 GIQPT---RSSSSRGIGLSLLIFFCYYV-LMTLAGALGQSGALNPAYAVWLPNVAGLLIG 354

Query: 350 FLLMIKKKY 358
             LM +  +
Sbjct: 355 AYLMREAAH 363


>gi|66044343|ref|YP_234184.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|302188386|ref|ZP_07265059.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
 gi|63255050|gb|AAY36146.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|330899517|gb|EGH30936.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330950946|gb|EGH51206.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
 gi|330969234|gb|EGH69300.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 375

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 131/359 (36%), Gaps = 31/359 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +    L  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPE 244

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            S  +        S L+ NP P +            +E   R++  L   I  L++I   
Sbjct: 245 ISEEITDREAIPTSELIGNPAPRSV-----------AELQWRISLPLSVFIVTLMAIP-- 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
             R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ + +I+L
Sbjct: 292 LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345


>gi|301308106|ref|ZP_07214060.1| putative permease [Bacteroides sp. 20_3]
 gi|300833576|gb|EFK64192.1| putative permease [Bacteroides sp. 20_3]
          Length = 651

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P  +  +  L    +       + E  F++      + + K +P +  L+ + I D  
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIIL 203
           +     ++  A SG +      + L
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFL 208



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  Y+   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +  
Sbjct: 378 DEAYK---VRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFI 431

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L    ++ + + +  K
Sbjct: 432 FYYIIDNMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|298374434|ref|ZP_06984392.1| permease [Bacteroides sp. 3_1_19]
 gi|298268802|gb|EFI10457.1| permease [Bacteroides sp. 3_1_19]
          Length = 651

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P  +  +  L    +       + E  F++      + + K +P +  L+ + I D  
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIIL 203
           +     ++  A SG +      + L
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFL 208



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  Y+   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +  
Sbjct: 378 DEAYK---VRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFI 431

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L    ++ + + +  K
Sbjct: 432 FYYIIDNMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|291287413|ref|YP_003504229.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884573|gb|ADD68273.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 349

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 128/363 (35%), Gaps = 20/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+ I   F +  +F V +  + +++   +L  +      ++++   Y +P+ 
Sbjct: 1   MKLLHKYILKEIYPIFFLGNVFFVLLLLLDKLIDLADLFFTKNVPAFLIIQTIVYYLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        ++ ++E+  +   G  +     P +   +   +   +    
Sbjct: 61  LVITIPTSAMLAVMIGFGRLSSDSEVTAMRAAGAGKKFFTTPTIIFGLTAFLLGIMMSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P          +K    ++ + ++E   +     +     K + N   + + I+D   
Sbjct: 121 LMPAGSRNAIGNLSKIAKLVSINDMKEKELYDELPGIVFYAVKKDSNAKYRKMVIID--- 177

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              H +  A    I     A   + L +G +   +      S + F ++TL +   ++  
Sbjct: 178 KAQHSVITANEAEILPSGNAGLLMNLKNGRIVTLN-EDGKHSKINFDTFTLNSPLIDAKD 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I +  +++ +         +     +    Y+ EF KR++     +I  +  +       
Sbjct: 237 ISVN-SERIMQT------KDLIENFQEAPLYKFEFSKRISMPFAAIIMSIFGMS---LGI 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLLMI 354
              +  +   I I++++       F    +  E     P+    L   LF + ++F    
Sbjct: 287 FFHRSGRSLAIPITIAVVAVYNILFFAAENFAESGRIEPFLAAWLPNILFALIAVFFYRR 346

Query: 355 KKK 357
             K
Sbjct: 347 AMK 349


>gi|86609823|ref|YP_478585.1| YjgP/YjgQ family protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558365|gb|ABD03322.1| putative membrane protein, YjgP/YjgQ family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 400

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 130/378 (34%), Gaps = 29/378 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIV-FIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+L  +   FL         +  V  + + + LV  +  SL+  L++     P +
Sbjct: 26  GLMDRYVLSEMLLPFLFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      ++ + E+  +   G S   L+ P L L++L++   F+   +
Sbjct: 86  IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLMVPALVLSLLVTTLTFLFNEL 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---------------ENLFFRLDDDLY--IKISK 163
           + P           +A         E               +  F R    L        
Sbjct: 146 VVPVSNRQAATTLNRALNRDPDFRRENILYQEFGEILMPEPDGTFSR-RQGLTRQFYARS 204

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
           ++    ++GI ++D  +   ++I  AQ G  D      +  DG  +  SP     +I  F
Sbjct: 205 FD-GKQMRGIIVLDFSNEALNQILLAQRGRWDPQENLWVFEDGTNYIVSPDGTYSNIATF 263

Query: 224 KSYTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWL 280
               L+   A       +    + N+  L +      +    + +   +   +++     
Sbjct: 264 SRQELRLPRAPLELAQEIRSPEEMNIRELKHYIEVIASSGDLQRVRRLQVSLNQKYAIPF 323

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--I 338
             + F LI +    +    ++      + IS+ I F  F+   +I   + Q     P   
Sbjct: 324 ACLAFTLIGVPLGLRP---QRTGSSLGLGISVLIIFA-FYVLLFITQALGQIGTLGPATA 379

Query: 339 LYLFLFCISSIFLLMIKK 356
            +L  F  + + L ++ +
Sbjct: 380 AWLPNFICAVVGLGLLHR 397


>gi|282850060|ref|ZP_06259442.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
 gi|282580249|gb|EFB85650.1| YjgP/YjgQ family [Veillonella parvula ATCC 17745]
          Length = 363

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 129/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L ++++     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMQAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+     + +  +  +       + ++  +  +       +    YN     L  I 
Sbjct: 121 FVVPRTNHMYQTIVREQIMKNASPQTQNHIVLKTMNGDELGTLMYAKSYNAETKQLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S  +     MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--IWNGQYWVMQNGIIYDLSAGNGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIRAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIF 350
              +    +QR      F    +   +++G       + +      +L  L    +  I 
Sbjct: 298 LGLQ----KQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|150010074|ref|YP_001304817.1| hypothetical protein BDI_3493 [Parabacteroides distasonis ATCC
           8503]
 gi|256838884|ref|ZP_05544394.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149938498|gb|ABR45195.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256739803|gb|EEU53127.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 651

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 86/205 (41%), Gaps = 2/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S I +++P++   + +S+  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P  +  +  L    +       + E  F++      + + K +P +  L+ + I D  
Sbjct: 124 VMPVVQVKLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIIL 203
           +     ++  A SG +      + L
Sbjct: 184 EGFNNARVIVADSGRLKTSADKLFL 208



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  Y+   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +  
Sbjct: 378 DEAYK---VRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFI 431

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L    ++ + + +  K
Sbjct: 432 FYYIIDNMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 472


>gi|254456522|ref|ZP_05069951.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083524|gb|EDZ60950.1| putative permease, YjgP/YjgQ family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 362

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 139/357 (38%), Gaps = 20/357 (5%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
              FL++ +    + WV Q +  ++++     S ++ +  S    P ++  + PF     
Sbjct: 1   MSFFLIALISAGIVIWVFQAVNFLDIMIEDGRSYSVYISYSLLNFPKIINKLFPFILFFS 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
              V      N EL+I  N G ++I LI  +   +++L +   I   II PK +   +  
Sbjct: 61  LFYVTIKYENNNELIIFWNFGINKIQLINFIFKFSVILMLIQLIFSAIIVPKSQDLARSF 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG 192
              + +    ++++   F     ++ I   + + +  L  +++    +    +I YA+ G
Sbjct: 121 LRSSTVNFYENFIKPKRFNDTIKNVTIFSERKDIDGNLYNLYLKKEINENNFQITYAKKG 180

Query: 193 SIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS-- 248
                 +   ++L +GE    +  + +I+   F        +  +++ V +   Q LS  
Sbjct: 181 YFKEFNNLPVLVLFNGET--ITSKNNEITNFSFSKSDFPINNTETNSFVTQQKTQELSSY 238

Query: 249 -------FLL-----NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  FL+       +P   N      +    E +KR    ++ ++  LI ++     
Sbjct: 239 NLLKCVKFLIPTKKNKLDPKIINCSERNKDNIFKELYKRFIIPIYILVLTLIPLLVTILS 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSY--IIHKIEQNPYYIPILYLFLFCISSIFL 351
               +  ++  I   + + F +F   +   I   I +N     + ++F+  +  IFL
Sbjct: 299 KEDSKYSRLKFIAFLIGLFFIIFSETTIRLISDSIIKNISISLLPFIFIITLYLIFL 355


>gi|157368808|ref|YP_001476797.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
 gi|157320572|gb|ABV39669.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
          Length = 364

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 127/356 (35%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFCQNLVRVLGDAVDGDVPTNLVLSLLALGVPKMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + TLI   + LA+  S+    +   + 
Sbjct: 62  LILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALFTSVIAAANVFWVG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F    D   +        +T   +F+   R   
Sbjct: 122 PWASRYQDVVVSEAKANPSIAGLAEGQFKTSQDGNAVLFIGNVKGSTFNNVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G I+      Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 182 NQRPSVVVAEHGQINQMKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVTV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  LL  +  +           R+EFH RLT  L  VI  L+ +       
Sbjct: 242 DGNQAEQMSMKTLLASDDPDA----------RAEFHWRLTLVLSVVIMALLVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +  +   L          S   +  +      P+++L++   +   + +
Sbjct: 290 NPRQGRVLSMLPAILLYLIFFLLQTSLRSNGGKGKLD--PMVWLWVVNAAYFAIAL 343


>gi|114319720|ref|YP_741403.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226114|gb|ABI55913.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 372

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 143/364 (39%), Gaps = 26/364 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R +  ++L   L +  +    +++  +   +       ++L + G      L 
Sbjct: 8   VVDRYLVREVLFAWLAVLLVLFAVLATNRLIGYLGDAAGGELPGGVILTLLGLQTVRYLG 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P  F +        + R++E+ ++   G       + +L+LA+ L+  + +      
Sbjct: 68  MILPASFFLGIVLAFGRLYRDSEMAVMSACGIGPWRQFRALLWLALPLAGLVGLLSLYWG 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL--YIKISKYNPNN-TLQGIFIVDSR 179
           P      +Q+ A+A+  + F+ L+   F +        + + + + +   ++ +FI  + 
Sbjct: 128 PAATQKAEQVQAEAEAQVEFAALQAGRFLQARGATEGTLYLERLSEDQREMEDVFIR-AG 186

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSY-TLQTESAN 234
            T    +  A+ G  + D +     ++L DG  +   P + D  + +F+ +  L  E + 
Sbjct: 187 GTADRVVLAARRGVQEKDPETGDRYLVLLDGWRYDGRPGAADWRVTRFERHGVLVAEGSE 246

Query: 235 SSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              + L+ N Q  + L   + P +           R+E   RL      ++  L+++  +
Sbjct: 247 EVAVRLRRNAQPTAELWGSDHPAD-----------RAEVQWRLAMPAMTLLLALLAVPLS 295

Query: 294 -DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
                  R  + +  + + +     +  G  ++  +  Q P  + + +L   +  +  + 
Sbjct: 296 KSAPRDGRYGRLLSAVLVYVGYFQFLTVGQDWL--ETGQVPAALGLWWLHGAVLAVGVLG 353

Query: 351 LLMI 354
           LL  
Sbjct: 354 LLWR 357


>gi|254424599|ref|ZP_05038317.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
 gi|196192088|gb|EDX87052.1| putative permease, YjgP/YjgQ family [Synechococcus sp. PCC 7335]
          Length = 397

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 128/362 (35%), Gaps = 25/362 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI + +   FL        I   +  + + I  V+ +  S  +  +I    +PT
Sbjct: 23  ITIMDRYIAKELTLPFLFGVGAFSSIAVSIGALFELIRKVADAGLSATLAFEIFLLSLPT 82

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              +  P    + T    +  + ++EL+ +   G S   ++ P + L++L++   F    
Sbjct: 83  FTVLAFPMSTLLATMMTYSRFSSDSELIAMRGCGVSINRIVAPAVILSLLVTGLSFSVNE 142

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN--LFFRLDDD---------LYIKISKYNPNN 168
           II P        L A+A          E   +F + +            +     ++   
Sbjct: 143 IIAPASTERAALLLARALDD-EKPPFREGNIVFQQQEPAADGSGDELVRFFYARNFD-GT 200

Query: 169 TLQGIFIVDSRDTQTH----KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
           T++ I +VD     +     +I  A + + D  R      +G ++  SP      I++F 
Sbjct: 201 TMRDITVVDFSQEDSEDGLKQIVSADAATWDFTRNLWEFTNGTIYAVSPTGSFRQIIRFD 260

Query: 225 SYTLQT--ESANSSTIVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLF 281
              LQ      + +    K  + N++               + +        ++      
Sbjct: 261 KQDLQLPRTPLDLANRTKKQEEMNIAETKEYLTILQQTGDEKAVRKLAVAIQRKYAIPFA 320

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            V+FGL+      +    ++  K     IS+ I FG +   S+I   + ++    P L  
Sbjct: 321 CVVFGLVGAAVGVRP---QRTGKATSFGISVVIIFGYYL-LSFITSAMGESGVITPFLAG 376

Query: 342 FL 343
           ++
Sbjct: 377 WV 378


>gi|262280663|ref|ZP_06058446.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257563|gb|EEY76298.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 366

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 131/366 (35%), Gaps = 17/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVISLLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPITLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAK 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E+   
Sbjct: 181 ADKPDVMILAKEATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKD 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +   +  L    N+P          RSE   RL      +I  ++S+  ++ 
Sbjct: 241 VKFESGDVEALSTTKLFSKTNDPVV--------RSELGWRLFGPFTIIIALMLSVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +  ++ P     S    +       I K E + +  P + L ++ I++      +
Sbjct: 293 SPRQGRYYRLIPAIFIFSSLIVLMIAIKTRISKEELDIWAYPAV-LVVYGIAAALFSRKQ 351

Query: 356 KKYTKI 361
           K   KI
Sbjct: 352 KLAPKI 357


>gi|255535566|ref|YP_003095937.1| hypothetical protein FIC_01427 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341762|gb|ACU07875.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 484

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 84/227 (37%), Gaps = 7/227 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+++     FL     + FI  V  I  ++   +    S   +LK+  YL   V
Sbjct: 2   IKKLDGYVIKSFLGPFLFIFSVLFFIFVVNIIWIQLAQFTGKGLSYWEILKLLAYLSVKV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +           EL  +   G S   ++ P+  ++I LS FLF+  N 
Sbjct: 62  VQLVLPLTILLSSIMTFGDFGERYELAAMKAAGISLTRIMMPLFVVSIALSFFLFLFSNN 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
           + P  +   K +                 F +      +K  +    N   L G+FI   
Sbjct: 122 VIPDFQRKAKNMLYNIAATKPALNFSPGQFIQQIPGYSVKFDEITGENGENLTGVFIHKM 181

Query: 179 RDT-QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISI 220
            ++ +  +   A+ G            ++L +G +  ++  + D + 
Sbjct: 182 ANSYENQQSIVAEKGKFVQADNRNYLKLVLYNGHIFEENIGNVDYNQ 228


>gi|167752154|ref|ZP_02424281.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
 gi|167660395|gb|EDS04525.1| hypothetical protein ALIPUT_00396 [Alistipes putredinis DSM 17216]
          Length = 492

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 103/259 (39%), Gaps = 8/259 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +L+      +++   I+F+  +  + + I+ +         ++++  Y    +
Sbjct: 1   MKTIYKLVLKSYLGPMVLTFFIIMFVLMMNVLWRYIDELVGKGLDPGTIIELLCYATINM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    +     + ++  N ELL + + G S   +++P+L +  +L++  F   N 
Sbjct: 61  IPMALPLATLLAAIMTMGNLGENYELLAMKSAGMSLPKIMRPLLVVVSILAVGSFFIANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P       +     +        ++ LFF   D + I++   N     L  + I D+R
Sbjct: 121 LVPYANKKFFRTIYDIRQMNQTLEFQDGLFFNGIDGMSIRVGHQNQETGLLTDVLIYDNR 180

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPI-SKDISIMKFKSYTLQTESA 233
           +         A SG I L        I L +GE + ++   S+  +    +    + + A
Sbjct: 181 NASGNMTTTVADSGYIRLSDDKRFLEITLFNGERYEQTRNSSQWYNKSSLQRNKFELQKA 240

Query: 234 NSSTIVLKANDQNLSFLLN 252
           N S    +   +  + L N
Sbjct: 241 NISISGFEM-QRTDADLFN 258



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           +N   + + + +        L   + E+HK+L   +  +IF LI    A   A+VR+   
Sbjct: 346 RNSRSMFSFDESQAKNALNQLYRSKVEWHKKLALPVTIIIFFLIG---APLGAIVRRGGL 402

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             PI IS+ I F +++  S    K+ +   +      +L  F ++ + + +  K
Sbjct: 403 GMPIVISV-IFFVIYYIISSSGEKMAKEGTWEAFYGTWLSAFVLAPVAIYLTYK 455


>gi|238019692|ref|ZP_04600118.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
 gi|237863733|gb|EEP65023.1| hypothetical protein VEIDISOL_01566 [Veillonella dispar ATCC 17748]
          Length = 363

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 127/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+  +  + +  +  +       + ++  +  +       +    YN     L  I 
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S        MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--VWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIKAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIF 350
              +    +QR      F    +   +++G       + +          L    +  I 
Sbjct: 298 LGLQ----KQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|74316599|ref|YP_314339.1| hypothetical protein Tbd_0581 [Thiobacillus denitrificans ATCC
           25259]
 gi|74056094|gb|AAZ96534.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 359

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 132/361 (36%), Gaps = 16/361 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +   + R +G +       ++ IA VI  ++ +  V+    +   +    G+ +   LP
Sbjct: 2   LYRRALTREMGLATGAVLTVLIAIALVILFIRLLGDVARGELANEAVFAFLGFSLLYFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++            L+ M R++E++I  N G S    ++PVL  A+ LS+ + +   ++ 
Sbjct: 62  VLMTISLFAGVLMPLSRMWRDSEMVIWFNAGLSLAQWLRPVLAFAVPLSLVILLLTLVLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNP-NNTLQGIFIVDSRD 180
           P  ++         +     + +   LF           +   NP    ++ +F+    D
Sbjct: 122 PWLQAKKNDYRQDLKARSESALIAPGLFAESGAGERVYYVESLNPLTGIVRNVFMQSRID 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A+ G    +    + ++   G  +  +P + D  +++F+ Y ++ +   +  
Sbjct: 182 GQLGLVV-AREGDHTELPDGSRYLVFRQGRRYEGTPGTLDYRVVEFERYWMRLDPVATGG 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  ++   LL           +     R+E   RL   L  ++  +++I  +    
Sbjct: 241 RDTNIRQKSAGDLL----------ADPAPAARAELLWRLGVPLSALVLAVMAIPLSFVNT 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R+   +    +   +   +       + +   +P+        +  +++  L  ++ +
Sbjct: 291 RARRSYGLVTALLLYFVYNNLLSLTQAWVAQGRFDPWAGMASAHLVMLLAAAGLFYLRSR 350

Query: 358 Y 358
            
Sbjct: 351 R 351


>gi|119899193|ref|YP_934406.1| hypothetical protein azo2903 [Azoarcus sp. BH72]
 gi|119671606|emb|CAL95519.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 359

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 98/263 (37%), Gaps = 7/263 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   +LR   ++     + +  I   I +++ +   +      + +L + G+   T +P
Sbjct: 2   IFRRALLREFSQTAAAVFVALFAILVTIVLIRLLGQAAGGGVPSDAVLALIGFGALTEMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +     L+   R++E+++   +G      I PVL  A+ +   +      + 
Sbjct: 62  VVLTLTLFVAVLLTLSRSYRDSEMVVWFASGVPLTAWIGPVLRFALPVVAVIAGMTLFLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVDSRD 180
           P       +   + +       +   +F        +   +     +  ++ +F+ D  +
Sbjct: 122 PWAHMKNAEYRERLESRDDTQRVAPGVFRESAGSRRVFFVEVGAGEDGRVRNVFVSDE-N 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +  D +    ++L  G  +   P + +  +M F+ Y++Q E+  ++ 
Sbjct: 181 GDRLSVIAAAEGYLKTDEEGNRFVVLEKGRRYDGKPGTPEYRVMSFERYSVQIEAKQAAA 240

Query: 238 IVLKANDQNLSFLLN-PNPNNPN 259
              ++  +    LL  P+  N  
Sbjct: 241 QPQRSRARPTEELLRSPDDRNLG 263


>gi|187922984|ref|YP_001894626.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|187714178|gb|ACD15402.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
          Length = 365

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 131/362 (36%), Gaps = 16/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     + ++ +     +++ +   +S       +L + G  +   L 
Sbjct: 2   IFERSLQRELAYTAGAVFMVLLTLVLTTMMIRIVGFAASGEIDPRDVLVLIGLTVIGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++  ++G S    IKP+   A  + I +     +  
Sbjct: 62  IMLVATLFVSILFVLTRWYKDSEMVVWLSSGVSLTQFIKPIGIFATPIIILIMFFVFVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNN-TLQGIFIVDSRD 180
           P      K + A+ Q     S L    F           I K + +   ++ +F+  + +
Sbjct: 122 PWSNQQSKLIRARFQQRDEVSLLAPGQFRESATSHRVFFIEKMSADQARVENVFVTSTEN 181

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + + +      + +     + ++L +G  +   P   D  IM+F+ Y ++ +S      
Sbjct: 182 GKVNVVVSKTGHTETRKNGDRFVVLENGRRYDGQPGQPDFRIMEFERYGVKIQSQPVVNT 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRA 297
                   L+ L NP  +N            +EF  R    L  +   L++I  A     
Sbjct: 242 PSTTGTPTLTLLRNPTNDNL-----------AEFAWRAGLPLIAINLMLLAIPLAHQNPR 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R    +  + I L+ S  +    S+I       P  +  L++ +  I +    +  + 
Sbjct: 291 RSRTINLVMAVLIYLTYSNLLNVVQSWIEQGKMSFPVGLVGLHVIVAAIVAFIFWLRVRN 350

Query: 358 YT 359
             
Sbjct: 351 RP 352


>gi|56461047|ref|YP_156328.1| permease [Idiomarina loihiensis L2TR]
 gi|56180057|gb|AAV82779.1| Predicted permease [Idiomarina loihiensis L2TR]
          Length = 363

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 22/360 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++    +S L     ++ I    + ++ ++  S       I+ ++    +P +L ++ P 
Sbjct: 1   MISETLKSQLAVLFILMTIFVSQKFVRVLSDASEGDIPGAIIFQLLSLNLPALLSLILPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +        +  + E+ ++   G S   + +  L L+++L+I        + P    
Sbjct: 61  SLFLGILLAHGRIYADNEMTVLHACGVSEWYVTRVTLVLSLILAIITASFTLWLVPWSLD 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFI----VDSRDTQ 182
             ++L  KA+     + L    F +  +    I + +      L+ +F+     +  + Q
Sbjct: 121 QEQKLEDKARSESGLTALMPGRFQQASNQKAVIFVQRVGDEGDLEEVFVAQHTHNQGELQ 180

Query: 183 THKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  +  A++G +  +      L  G+  R +       +M F SY LQ +   +S  + K
Sbjct: 181 SGSVVMAKTGKVISETTGSQWLELGQGKRYAGDDDSYQMMSFDSYQLQIKEQQASEQLRK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                   LL+                 +E   R+   L      L++++A     +  +
Sbjct: 241 LEAYPTVELLSRKEP----------AAIAELQWRIAIPL---AMPLLTLIAVPLSRVNPR 287

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKKKYT 359
           + K   +  +L I  G F           ++    PI  L+   F +    L ++ K   
Sbjct: 288 QGKFGRMAPALLIYLGYFL-LLMAAKSAIRDGVIPPIIGLWWIHFILLIFGLALVGKGRP 346


>gi|220932585|ref|YP_002509493.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
 gi|219993895|gb|ACL70498.1| permease YjgP/YjgQ family protein [Halothermothrix orenii H 168]
          Length = 365

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 125/368 (33%), Gaps = 18/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           MK    Y+ R +   FL        I     IL  +  + ++       L+++    +P 
Sbjct: 1   MKIIYRYLTRELIMPFLFGVAAFTAIFIGTDILFTLTRLYNNFGVEFTTLVQLFFLKLPP 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    M T      ++ + E+      G S   ++ P L + +++S+   +   
Sbjct: 61  IIVLTFPMATLMGTLMSFGRLSGDGEITAFRAGGVSVYKIVIPSLLVGLIMSVTTIMVNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD------DLYIKISKYNPN-NTLQG 172
           ++ P+      Q+  + +        + +L     D      D  +   ++N     +  
Sbjct: 121 MVVPRANYLYDQIVWEIKNGRKMPATQYDLTLTPLDRKYRRPDYILYTHRFNGETGIMND 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--T 230
           +++ D        +  A+      D+      +G ++      + +  +KF  Y ++   
Sbjct: 181 VYLQDYEKGVPVTLIKARKAVWQGDK--WHFYNGNIYYF-KEGERVPALKFNEYVIKQPI 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +      + K  +      L         + +     R ++H+++       IF L++ 
Sbjct: 238 YTPRRIGKMNKDIEDMSFKELGEYIQFLEEQGKDTFEERVKYHQKIAIPFASFIFALLAA 297

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISS 348
               K    R       + +S+ + F +++    +   + +     P    +L  F    
Sbjct: 298 PLGIKPR--RSGGTATGMGLSIIVIF-IYYTIMTLGSALGERGTISPFFGAWLQNFIFLI 354

Query: 349 IFLLMIKK 356
           +   MI +
Sbjct: 355 VGGYMIYR 362


>gi|253997571|ref|YP_003049635.1| permease [Methylotenera mobilis JLW8]
 gi|253984250|gb|ACT49108.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
          Length = 374

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 126/360 (35%), Gaps = 19/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   +++ +  +   + L ++ I    +    + L +      + +  I G+ +   LP
Sbjct: 2   LFRHSLIKELISTAAGAFLILIGIVVAQRAGTLVRLAAKGILPNDAITTILGFNMVKFLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV      +     L+   R++E++I  + G S    ++PVL     + +F+      + 
Sbjct: 62  MVLSLSLFLAVLMTLSRWYRDSEMVIWFSGGLSINNWVRPVLTFIFPVILFILALSLFVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNP-NNTLQGIFIVDSRD 180
           P   S  +    + +     + +   +F    +      +  ++   N ++ IF+   + 
Sbjct: 122 PWATSKGELYRTQLEARDDLATISPGVFKESANGDRVFFMESFDELGNVVKNIFVQTMQH 181

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  AQ            +++ +G+ +     S + S   F+ Y ++ E+  +   
Sbjct: 182 QKLGVIVAAQGSRYTEKNGDNFVLMENGKRYEGRRGSAEFSTTTFEKYAIRIEAKEAKEE 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 ++   L++              T ++E   RL   +  +I  L++I      AL
Sbjct: 242 PPSTQSKSTKELVS----------SANSTNKAELQWRLAIPISALILSLLAI---PLSAL 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKK 356
             +  +     ++L I        S       Q      + +  +  F +     L  ++
Sbjct: 289 DPRAGRSANFILALVIYIIYNNLLSIFQAWTAQGKLSALVGLWPVHAFFLLLTIYLFRRR 348


>gi|46143410|ref|ZP_00135308.2| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208575|ref|YP_001053800.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae L20]
 gi|307246019|ref|ZP_07528101.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307248123|ref|ZP_07530151.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307250354|ref|ZP_07532303.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307252738|ref|ZP_07534629.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307255000|ref|ZP_07536818.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257154|ref|ZP_07538926.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307259436|ref|ZP_07541161.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|307261582|ref|ZP_07543250.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263771|ref|ZP_07545377.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097367|gb|ABN74195.1| hypothetical protein APL_1103 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|306852954|gb|EFM85177.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306855300|gb|EFM87475.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306857629|gb|EFM89736.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306859770|gb|EFM91792.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861873|gb|EFM93849.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306864316|gb|EFM96227.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306866372|gb|EFM98235.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306868705|gb|EFN00514.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306870892|gb|EFN02630.1| Lipopolysaccharide export system permease protein lptF
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 343

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 113/335 (33%), Gaps = 21/335 (6%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           + +  Q++  +N   S     +++L + G  +P +   + P    +     L      +E
Sbjct: 1   MFFSQQLITVLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + ++   G  +  L K   FL+I  +     +   + P   +   ++ A+A+    FS L
Sbjct: 61  ITVMRACGIGKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSAL 120

Query: 146 EENLFFRLDDDLYIKISKYNPN-NTLQGIFIV--DSRDTQTHKIYYAQSGSID---LDRQ 199
               F        + I   N   N L  I++   D +      +  A+SG +       Q
Sbjct: 121 SAGQFMT-AGGYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQ 179

Query: 200 AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
            + L +   +  +    D  I  F SY       +  +        + + L+        
Sbjct: 180 ILTLENSTRYEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLM-------- 231

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
              +     ++E   R    L      L++++A    ++  ++ +   +  ++ +    F
Sbjct: 232 --ADQSNEAKAELQWRFALIL---AVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYF 286

Query: 320 WGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLM 353
              S +             ++ L       + ++M
Sbjct: 287 LLQSSLKSSGASGKLDATLLMPLVSIAFFILAMVM 321


>gi|121591520|ref|ZP_01678785.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
 gi|121546628|gb|EAX56818.1| inner membrane protein YjgP [Vibrio cholerae 2740-80]
          Length = 277

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 96/281 (34%), Gaps = 15/281 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY          +
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVKS 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                       LLN                ++E   R++ 
Sbjct: 242 AERDWEALPTLSLLN----------NADRRAQAELQWRISL 272


>gi|218438808|ref|YP_002377137.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
 gi|218171536|gb|ACK70269.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7424]
          Length = 434

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/373 (12%), Positives = 126/373 (33%), Gaps = 22/373 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   F++S      +   +  +    N V      +   LKI  Y +P  
Sbjct: 63  SLMDRYLTSQLIPPFVLSVGIFTSMGVALANLSDLSNKVFEYDLPVIDALKILLYRVPEF 122

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T      ++  +EL+ + + G S      P + L++++S   F+    
Sbjct: 123 FAYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATVPAVILSVIVSGITFVFSEG 182

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLYI------KISKYNPNN 168
           + P+      ++  K        +  +++F       +L +            ++     
Sbjct: 183 VVPETNYRATEILVKVLHEERNFWQNKDIFYPNYEEVKLANGQTFRQLKTLFYAEKFDGQ 242

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--Y 226
            ++ + I++      ++I  + S   + ++      +G V+           + FK   +
Sbjct: 243 KMRSLTIINWLGDHLNEIVVSDSAQWNANQNIWDFFNGTVYLIDTDKSYKEAVPFKHQQF 302

Query: 227 TLQTESANSSTIVLKANDQNL-SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            L  E+   +T      + NL   L        +   + +  +    H+++      ++F
Sbjct: 303 PLPKEAFEFATQGRNPYEMNLFQALQYKRLLEASGDNKNVRFFDVRIHQKIAFPFVCLVF 362

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFL 343
           G++      K   + +      + +++ I F  +   ++            P++  +L  
Sbjct: 363 GIMGAAIGAKPQQMSRGTS---LGLTVGIVFSYYM-LNFFTGSFGMIGLLSPMMAAWLPN 418

Query: 344 FCISSIFLLMIKK 356
                I   ++KK
Sbjct: 419 LFGVGIGGWILKK 431


>gi|50083532|ref|YP_045042.1| hypothetical protein ACIAD0254 [Acinetobacter sp. ADP1]
 gi|49529508|emb|CAG67220.1| conserved hypothetical protein; putative permease [Acinetobacter
           sp. ADP1]
          Length = 366

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 123/362 (33%), Gaps = 18/362 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       +L  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SRI L + ++ LA++  +   I    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P       QLS+   +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGP-YTIYAGDLSEDRKNLKDIFFYQRAQK 180

Query: 180 DTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     S  +F+ Y L+ E+  S
Sbjct: 181 EGKPDVMILAKEATRVVMENETANVVDLIQGRRYEIYPGKAKYSQAEFQRYRLRLENDKS 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +T      +   S  L    N+P           SE   R+      VI  ++++   + 
Sbjct: 241 ATFETDKVEALPSSKLWNKWNDP--------VIASEMGWRVFGPFTIVIALMMAVALCE- 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               RQ +    I      +  +    +                        +  L   K
Sbjct: 292 -VSPRQGRYYRLIPAIFIFASLIVLLIAIRTRISRDELGVWAYPAALAVYGIAAALFSRK 350

Query: 356 KK 357
           +K
Sbjct: 351 QK 352


>gi|193212373|ref|YP_001998326.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085850|gb|ACF11126.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
          Length = 440

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 91/264 (34%), Gaps = 12/264 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F  + + I+ +  +  + + +  +        I+ ++       +
Sbjct: 1   MKIFDRYILKTHLGTFFFAFVTIMSVFILSFVTKFLERLIGKGLDFGIIAEVVLLQSAWM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T      +  ++EL ++   G S   L+ PVL  A+ LS+ +    N+
Sbjct: 61  VGFAVPMAVLVTTVMAFGVLTNSSELTVMRAGGISIYRLVAPVLLAALALSLMMERYNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P+       L A          L++N F  +     I     +     L+ I + D  
Sbjct: 121 LMPEANYRANALFADITRLKPALGLDKNAFSDMIKGYSIMARDVDNKTGELRDIVLYDRA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKS-PISKDISIMKFK--SYTLQT-- 230
                 +  A  G I+         + L DG++H    P       M F    Y      
Sbjct: 181 QPDVRTVILAARGKIEFTPDNTHLVLTLEDGQIHELRLPAMDRYRTMSFSKNRYVFDATG 240

Query: 231 --ESANSSTIVLKANDQNLSFLLN 252
                +         + + S LL 
Sbjct: 241 YDFERSDEGRRRGGKELSASDLLA 264



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            E    Y  E+HK+ +     ++F ++    A    + R+        +SL   F ++W 
Sbjct: 338 REDYRKYMIEYHKKYSLAFACLVFAMVG---APLGVMARRGGFGAGAALSL-FFFVLYWV 393

Query: 322 FSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
                 KI       P   ++L    ++   L M+ +
Sbjct: 394 LMIGGEKIADQGLLSPAVSVWLPNAILTCAGLFMLYR 430


>gi|330938932|gb|EGH42431.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 375

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 128/358 (35%), Gaps = 29/358 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +    L  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y        
Sbjct: 185 KSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  +        S L+           +      +E   R++  L   I  L++I    
Sbjct: 245 ISEEITDREAIPTSELI----------GDPAPRSVAELQWRISLPLSVFIVTLMAIP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            R   RQ + +      L  +  ++  +  I+  +  +     + L L ++ + +I+L
Sbjct: 293 SRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 345


>gi|292669943|ref|ZP_06603369.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648414|gb|EFF66386.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 366

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 132/373 (35%), Gaps = 27/373 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P 
Sbjct: 5   IRILDKYIFREVFSSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPG 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +      ++  +E+  + + G     +  P + L  ++S+       
Sbjct: 65  VVMWTFPMAMLLASLLTFGRLSSASEITAMKSCGIGFGRIAAPAILLGFIVSVGAIFFNE 124

Query: 120 IIEPKCRSTIKQLSA---------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT- 169
            + P+  +  + +           K+Q  +    +EE    RL     +    Y+     
Sbjct: 125 HVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEEGQIRRL-----VYARSYDAEQER 179

Query: 170 LQGIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           L GI +     D +   +  A+    +      I+++G+V+  +    +   M+F++  L
Sbjct: 180 LTGISLQVFGDDGKVTHVENAE--YAEWTGTEWIMHNGDVYDIADEHLE-RRMRFETQVL 236

Query: 229 QTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      I  +    +  +  L +        +        +E ++R++  +  +IF 
Sbjct: 237 PVQKDPRQIIREQKVPEEMTMRELRHQ-IALMQTQYVNTSKLEAELYQRVSVPMASLIFT 295

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           LI +    +    R           + I F  ++    + +   +     P+L +++  I
Sbjct: 296 LIGVPLGLQP--TRNSSSAGFAMSVIIIFF--YYALMTMGNAFARGEVLPPMLAVWIPNI 351

Query: 347 SSIFLLMIKKKYT 359
             I    I  +  
Sbjct: 352 VGIIAGTILLRRA 364


>gi|303230241|ref|ZP_07317009.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
 gi|303231004|ref|ZP_07317747.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
 gi|302514386|gb|EFL56385.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-049-V-Sch6]
 gi|302515167|gb|EFL57141.1| permease, YjgP/YjgQ family [Veillonella atypica ACS-134-V-Col7a]
          Length = 363

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 128/366 (34%), Gaps = 12/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFFLAMPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  LA+L+SI       
Sbjct: 61  IILLTFPMSVLLGSLMAFSRLSSTSEIVVMRAGGLSFLRLAMPVYILALLISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYN-PNNTLQGIF 174
            + P+  +  + +  +  +       + ++  +  +       +    Y+  +  L  I 
Sbjct: 121 FVVPRTNNMYQTIVREEIMKNASPQTQNHIVLKSMNGDNLSTLMYAKHYDSESKKLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    D     ++  A++     + Q  +++ G ++  S        MKFK   L  +S+
Sbjct: 181 VQQFNDKGELQQVENAENAE--WNGQVWVMHSGIIYDVSAGEGVERTMKFKEQVLPIKSS 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            +       K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PNEVQQDQRKPEELTIKELRHQIKAYKAAYTNS-NKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              ++             + + I +GV      +        +   ++   L  I+ ++L
Sbjct: 298 LGLQKQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTWMAAMIPDTLGIIAGLYL 357

Query: 352 LMIKKK 357
                +
Sbjct: 358 NWRVSR 363


>gi|298492659|ref|YP_003722836.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
 gi|298234577|gb|ADI65713.1| permease YjgP/YjgQ family protein ['Nostoc azollae' 0708]
          Length = 391

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 129/374 (34%), Gaps = 18/374 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   +  + + +  V  S   +NI LK+    +P V
Sbjct: 19  SIMDRYLAMQLLPLFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFILKLPYV 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++  +EL+ +   G S   ++   + L+ L++   +I    
Sbjct: 79  MVYSFPMSTLLATLMTYSRLSSESELIALRGCGVSVYRMVLTAVLLSSLVTAMTYIFNEQ 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLY-------IKISKYNPN 167
           I P       +   +A  +   S+ + N++       +  D              +++  
Sbjct: 139 IAPAANYEATRTLEQALKSDKPSFKQHNIYYPEYREVKEKDGSTTKILSRLFYADQFD-G 197

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +QG+ I+D      ++I  ++S   +  ++     +G ++  +P     +I++F+   
Sbjct: 198 KQMQGLTIIDRSREGLNQILVSESAQWNASQKVWNFYNGTIYLVAPDRSYRNILRFEHQQ 257

Query: 228 LQT--ESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           LQ      N +       + N+S  L           P+ +        +++      +I
Sbjct: 258 LQLPRTPLNLAENSRDYGEMNISQALQQLEVERLAGNPQKIRKLEVRIQQKIAFPFVCII 317

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+            +        I +   + +      +      +P     L     
Sbjct: 318 FGLVGSAMGTIPQRTGRGTSFGISVIVIFSYYLLLSVSGALAQADILSPLIGAWLPNSFG 377

Query: 345 CISSIFLLMIKKKY 358
            ++ +FLLM   + 
Sbjct: 378 LVTGLFLLMRVAQR 391


>gi|229588597|ref|YP_002870716.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229360463|emb|CAY47320.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 372

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 123/356 (34%), Gaps = 26/356 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A  +++ +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALIVAWLSLSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSR---- 179
               + +  K      F  LE   F  L+D            +   L G+FI + R    
Sbjct: 125 AMQFQLVLNKQDAMTEFDTLEPGRFQALNDGSRVTYTETLTDDRANLGGVFISEKRLGQD 184

Query: 180 -DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   +  A SG   +  D    +IL +G  +  SP   D   +K+ +Y +     + 
Sbjct: 185 KKDRGISVLVADSGRQEVRPDGSRYLILENGYRYDGSPGMADYRAIKYDTYGVMLARPDI 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  V   +      L   N               ++   RL+  L   I  L+++  A  
Sbjct: 245 SDEVTDRDAIPTMDLFGSNE----------LRSIAQLQWRLSLPLLVFIVTLMAVPLA-- 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           R   RQ + +  +   L   +  +       H   +     P L   L+ +  IFL
Sbjct: 293 RVNPRQGRFLKLLPAIL--LYMAYLTMLISAHGAVEKGKLSPTL--GLWWVHGIFL 344


>gi|313894646|ref|ZP_07828209.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440836|gb|EFR59265.1| permease, YjgP/YjgQ family [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 363

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 128/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLLLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALMISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+     + +  +  +       + ++  +  +       +    YN     L  I 
Sbjct: 121 FVVPRTNHMYQTIVREEIMKNATPQTQNHIVLKAMNGDELGTLMYAKSYNAETKQLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S        MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--IWNGQYWVMQNGIIYDVSAGDGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIKAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIF 350
              +    +QR      F    +   +++G       + +      +L  L    +  I 
Sbjct: 298 LGLQ----KQRSSSSIGFGISILIIFIYYGVMTFAGALGKGGALPTVLAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|294795168|ref|ZP_06760302.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
           3_1_44]
 gi|294453960|gb|EFG22335.1| putative membrane protein, YjgP/YjgQ family [Veillonella sp.
           3_1_44]
          Length = 363

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 127/370 (34%), Gaps = 17/370 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      + +    ++     L +++K     +P+
Sbjct: 1   MRLLDKYILKAFVGPFLFGVFAFTSIFIGTGTLFRIAQYITEYGAPLVLVMKAFVLALPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +  P    + +    + ++  +E++++   G S + L  PV  +A+++SI       
Sbjct: 61  IVILTFPMSVLLASLMTFSRLSSTSEIVVMRAGGLSFLRLAMPVYIIALIISIGAVAFNE 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD----DLYIKISKYNPN-NTLQGIF 174
            + P+  +  + +  +  +       + ++  +  +       +    YN     L  I 
Sbjct: 121 FVVPRTNNMYQTIVREQIMKNASPQTQNHIVLKTMNGNDLGTLMYAKSYNAETKKLSMIT 180

Query: 175 IVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +    +     ++  A +     + Q  ++ +G ++  S        MKFK  +L  +SA
Sbjct: 181 VQQFGEGGKLQQVENADTA--VWNGQYWVMQNGIIYDISAGDGVERTMKFKEQSLPIKSA 238

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    K  +  +  L +                  E ++R T  L   +F L+   
Sbjct: 239 PKDIQQDQRKPEELTIKELRHQIKAYKAAYTN-ANKLEMEMYQRFTIPLASFVFALVGAP 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIF 350
              +    +QR      F    +   +++G       + +          L    +  I 
Sbjct: 298 LGLQ----KQRSSSSISFGISILIIFIYYGVMTFAGALGKGGALPTVFAALIPDTLGIIA 353

Query: 351 LLMIKKKYTK 360
            L +  + +K
Sbjct: 354 GLYLNWRVSK 363


>gi|107103348|ref|ZP_01367266.1| hypothetical protein PaerPA_01004417 [Pseudomonas aeruginosa PACS2]
          Length = 362

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 130/354 (36%), Gaps = 25/354 (7%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           +  +       ++ I    + ++ +   +        L  I  + IP  L ++ P    +
Sbjct: 1   MLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGSLFLIMAFRIPGFLQLILPLGLFL 60

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
                   +   +E+ ++  TG S+  L+   +  A+L++I +      + P+  +    
Sbjct: 61  GILLAYGRLYLESEMTVLSATGMSQKRLLGYTMAPALLVAILVAWLSLFLAPQGINQFAL 120

Query: 132 LSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSR-----DTQTH 184
           L  K      F  L    F  + D   +    + + +   L GIFI           +  
Sbjct: 121 LLNKQDTLTEFDTLVPGRFQAMRDGTRVTYTEELSKDRGELAGIFISQKDLNSSNQERGI 180

Query: 185 KIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
            I  A+ G+ ++       +IL++G  +  +P   +   +++ +Y +      +S+ V +
Sbjct: 181 SILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPEASSEVSE 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            +    + L   +             Y++E   RL+  L   +  L+++     R   RQ
Sbjct: 241 RDAVPTADLFGSDNP----------RYQAELQWRLSTPLLVFVVTLLAVP--LSRVNPRQ 288

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLM 353
            + +  +  ++ +  G       +  ++++   P  I + ++    ++   LL 
Sbjct: 289 GRFLK-LLPAILLYMGYLALLIAVRGQLDKGKIPMAIGLWWVHGLFLAIGLLLF 341


>gi|312959168|ref|ZP_07773687.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
 gi|311286938|gb|EFQ65500.1| permease YjgP/YjgQ [Pseudomonas fluorescens WH6]
          Length = 372

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 106/308 (34%), Gaps = 22/308 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +S       L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVIIMSGRFVKYLAQAASGALDPGSLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A  +++ +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMIPAAGVALVMAWLSLSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNN-TLQGIFIVDSRDTQT 183
               + L  K      F  LE   F  L+D   +        +   L G+FI      + 
Sbjct: 125 AMQFQLLLNKQDAMTEFDTLEPGRFQALNDGTRVTYTETMTDDRANLGGVFISQKNQGEN 184

Query: 184 H-----KIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                  I  A SG   +  D    ++L +G  +  SP   D   +K+ +Y +     + 
Sbjct: 185 QKDRGISILVADSGRQEVRPDGSRYLVLENGYRYDGSPGLADYRAIKYDTYGVMLARPDI 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S  V   +    + L                   +E   R++  L   I  L+++     
Sbjct: 245 SEEVTDRDALPTASLF----------GSQELRSIAELQWRISLPLLVFIVTLMAVP--LS 292

Query: 296 RALVRQRK 303
           R   RQ +
Sbjct: 293 RVNPRQGR 300


>gi|323492969|ref|ZP_08098107.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
 gi|323312800|gb|EGA65926.1| hypothetical protein VIBR0546_19372 [Vibrio brasiliensis LMG 20546]
          Length = 367

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 130/354 (36%), Gaps = 23/354 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVALSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +  +  
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAGFNSFVFS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDS--R 179
           P  +  + QL  + +   +   L++  F    D    + I   +    L+ +F+     R
Sbjct: 122 PYSQDKLVQLQEEVEAENSVDLLKKGHFQGTPDGSSVVFIDDID-GKQLKHVFVAQMRPR 180

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D+    + ++QSG +      RQ I + DG  +   P   D  + KF  Y       +  
Sbjct: 181 DSILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTKFDQYEGLIGQRDVK 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                        L+ NP+P             ++E   R++     V   L++++    
Sbjct: 241 RKGRDWEAIPTLELMKNPDP-----------RAQAELQWRIS---LVVCIPLLTMLVVPL 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            A+  ++ +   +  ++ I    F   S       ++     I+ ++    + +
Sbjct: 287 SAVNPRQGRFAKMGPAILIYLAYFLSIS-ATKSALEDGSIPAIIGMWPINAALL 339


>gi|319955107|ref|YP_004166374.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
 gi|319423767|gb|ADV50876.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
          Length = 493

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 95/246 (38%), Gaps = 15/246 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L     +F  S   ++ I     I   I+ ++     + I+LK   Y++P +
Sbjct: 1   MRILDRYLLSRFLYNFFSSFAILMLIFVFQTIWLFIDDLAGRGLDVMIILKFLFYIMPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + +     S+  N E   +  +G S    ++P++    +L + +F   N 
Sbjct: 61  MEKVLPLTVLLASILTFGSIAENYEFAAMKASGISLQRSMRPLIIFVCILGVVVFYFANS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNT--LQGIFIVD 177
           + P     I  L          + + E  F  L+  ++ +K+ +   +N   L+ + I  
Sbjct: 121 VIPASEQKIYNLRKNIGQVKPSTAIVEGAFSDLEGTNMNMKVDRKYGDNDRFLENVIIHR 180

Query: 178 SRDTQTHKIYY-AQSGSIDLDRQA----IILNDGEVHRKSPISKD-------ISIMKFKS 225
             D   +     A++G +     +    ++L DG  +      K         +   F+ 
Sbjct: 181 KSDNSINNTVIKAKTGELVSSEGSDILKLVLRDGHYYEDITKKKSTENRKYPFAKSSFEI 240

Query: 226 YTLQTE 231
           YT+  +
Sbjct: 241 YTINQD 246



 Score = 36.1 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            +  + R ++   +    HK+    L  ++      V A   A++R+     P+ +++ +
Sbjct: 365 KDELDKRYKIYNMHIVSLHKKFALGLSCIVLF---FVGAPLGAIIRKGGLGVPMVVAILL 421

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
               ++   +  +   ++    PI+  +     +  + + + K+
Sbjct: 422 FLTYYFIGVFSENYA-KDGNMSPIIGAWTSTLIMLPLGVFLTKR 464


>gi|300114327|ref|YP_003760902.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
 gi|299540264|gb|ADJ28581.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
          Length = 383

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 129/360 (35%), Gaps = 24/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YIL+ +  +     L ++ I   I+ ++ ++  +        +L +SGY     L 
Sbjct: 6   IVDRYILKELSLNATAITLVLLLIFGGIRFIRFLSQATKGKVPGEAILALSGYEAIGALV 65

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  M  + E++ +   G SR  L++ VL   ++L+I +      + 
Sbjct: 66  LLLPLASFLAVLLALGRMGADNEVIALFACGVSRRHLLRVVLTFGLVLAIGVGSISLYLG 125

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P   +   +L  +A LA   S L    F                 +   ++ +FI    +
Sbjct: 126 PAASAEGYRLKQQALLAAETSGLVAGNFKESQHGQRVFYAESLTEDGLGMKNVFIQVW-E 184

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                ++ A +G +  D     + +IL DG  +        I I +F+ + +  +     
Sbjct: 185 PTQKTLFRAATGHLQTDEGTGDKHLILEDGYRYDLMGEEVGIRIFRFERHGILVKKGGMQ 244

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              ++        L                   +E   R++  +  ++  ++++  A  R
Sbjct: 245 EFRIRHQTLPTLTLWEMGAP----------KDIAEIQWRISMPITTLLLVMLAVPLA--R 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYL--FLFCISSIFLL 352
           +  RQ +    +  ++ +            + +E    P ++ + ++   +  +  I L 
Sbjct: 293 SGPRQGRY-AGLLPAVLVYVIYSNMLGIARNWVEHEVIPAFLGLWWIHALMLLVVLISLW 351


>gi|223938399|ref|ZP_03630293.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
 gi|223892968|gb|EEF59435.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
          Length = 383

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 144/388 (37%), Gaps = 38/388 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRIN-LVSSSTESLNILLKISGYLIPT 59
           MK    Y++R +  + +M+     F+  +   L+ I  L+ +   +L  +++  G LIP 
Sbjct: 1   MKILHTYLIRQVLATLMMTVAVFTFVLLLGNGLKEILVLIINRQATLGGVIQAFGLLIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL    P         V    + + EL  + ++G S ++LI P+L L+++L         
Sbjct: 61  VLVFALPMGMLTAALLVFGRFSADQELTAVKSSGVSLLSLITPILGLSLVLCGVSAAINM 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I P+CR     L  +    +  + L +++F +      I +   +  N L  I I    
Sbjct: 121 EIAPRCRIAYLDLRDEMVGKVAGAALPDSIFVKDFPGFLIYVGASDGKN-LTDIHICQLD 179

Query: 180 DTQTHKIYY-AQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +    K    A  G +    ++ ++ L D  +      S     +   S  L +   NS+
Sbjct: 180 ENDKVKTMTDAPKGLLQRSGNQTSLELFDARIFDVQSGSWAYPGIV--SQDLSSIKTNST 237

Query: 237 TIVLKANDQNLSFLLNPN---------PNNPNYRPELLET--------------YRSEFH 273
           +  +   D     L N           P     + EL +                R + H
Sbjct: 238 SKNIHIGDMTFRQLQNELQVVENEFAVPEKAGSKAELQQRRDILANKKKDVTMPIRVQMH 297

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +++        F LI I          +R+    I +SL++   V++ F  +    E  P
Sbjct: 298 RQVAFSFACFGFTLIGI---PLGIQAHRRETNVGIAMSLALVL-VYYSFIILGQSFEGRP 353

Query: 334 YYIP--ILYL--FLFCISSIFLLMIKKK 357
           Y  P  IL++  FLF      +L    +
Sbjct: 354 YLAPHLILWIPNFLFQAIGAVMLWRANR 381


>gi|282901534|ref|ZP_06309456.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
 gi|281193577|gb|EFA68552.1| permease YjgP/YjgQ [Cylindrospermopsis raciborskii CS-505]
          Length = 388

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 134/370 (36%), Gaps = 20/370 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + Y+   +   FL        +   +  + + +  V  S   +NI LK+    +P V
Sbjct: 16  SIMDRYLAMQLLPIFLFGVGAFTSVVLAIDSLFELLRKVVESGLPINIALKVFVLKLPYV 75

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ +   G S   ++   + L+ L++   +I    
Sbjct: 76  MVYSFPMSTLLATLMTYSKLSSDSELIALRGCGVSVYRIVLTAVLLSGLVTGMTYIFNEY 135

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF------RLDDD-------LYIKISKYNPN 167
           I P           +A  +   S+ ++N+++      +  D              +++  
Sbjct: 136 ISPAANYEASVTLERALKSDQPSFKQQNIYYPEYREEKTKDGGSSRLLARLFYADEFD-G 194

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++G+ I+D      ++I  ++S   +  +Q     +G ++  +P     +I++F+   
Sbjct: 195 KKMKGLTIIDRSQAGVNQIVVSESAQWNAYKQVWDFYNGTIYLVAPDRSYRNILRFEHQQ 254

Query: 228 LQTESANS--STIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           LQ  S     +       + N++  L           P+ ++       +++      +I
Sbjct: 255 LQLPSTPLIVAKNSRDYEEMNIAQSLQQLEIEKLAGNPQRIKKLEVRIQQKIAFPFICII 314

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGL+            + +      I + I + +      +      +P+     +L   
Sbjct: 315 FGLVGSAMGTIPQRTGRGRSFGVSIIVIFIYYLLLSVCGALAQAEILSPFVGA--WLPNL 372

Query: 345 CISSIFLLMI 354
           C   + +L++
Sbjct: 373 CGLGMGILIL 382


>gi|220907915|ref|YP_002483226.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
 gi|219864526|gb|ACL44865.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7425]
          Length = 389

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 135/370 (36%), Gaps = 17/370 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+L  +  +F+ S      I   V  +   +   + +   L++LL++    +P  +
Sbjct: 22  LLDRYVLSALLTAFVFSVAAFTGIGVAVGVVFDLVQDFADAQIPLSLLLQLLWLQLPYTI 81

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + + +    ++ ++EL+ + + G     L+ PV+   +L+    F     +
Sbjct: 82  SFCLPLGVLLASLSTFNRLSADSELVALQSVGVGIYRLVLPVVLFGLLVGGLAFGFNTSL 141

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-----DLYIKISKYNPNNTLQGIFIV 176
            P  RS   QL  +           +N+F+                +++    + G+ ++
Sbjct: 142 VPASRSQSSQLLQEVVQQGQAVTQAQNIFYPEYGPDREIQRLFYARQFD-GQQMYGLTVL 200

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D   T  +++  A+S   D         +G ++         +I++F    LQ      +
Sbjct: 201 DFSQTGVNQVITAESAVWDSTISVWTFTNGTIYLVDADGSYRNILQFTEQQLQIPRDPLA 260

Query: 237 TIVLKA--NDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               K   ++ +L+          P+  P  +   +    ++       +I   + ++ A
Sbjct: 261 LATPKPSISEMSLAEARRYLEQLQPDGDPREIRKLQLYIQQQYAIPWQGLI---LGLIGA 317

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIF 350
                 + R+K     +SL I F  +   S++   + ++    P++  +      +    
Sbjct: 318 GLGIKSQPRRKSRGFGLSLVIIFAQYV-LSFLTAALARSGGLSPLVAAWSVNGLGLGVAL 376

Query: 351 LLMIKKKYTK 360
            L+++  + +
Sbjct: 377 WLLLRAAHGR 386


>gi|16330198|ref|NP_440926.1| hypothetical protein slr0882 [Synechocystis sp. PCC 6803]
 gi|1652686|dbj|BAA17606.1| slr0882 [Synechocystis sp. PCC 6803]
          Length = 394

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 128/374 (34%), Gaps = 18/374 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   F+        +A  +  +   +  V+ S   ++I +KI    +P 
Sbjct: 20  LSVMDRYLFVELFLPFIFGMGMFTSLALSIGTLFDLVRRVTESGLPMDIAVKILFLKMPE 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    + +    + ++ ++EL+ + + G S   L+ P L   I+++   F+  +
Sbjct: 80  FVVLAFPMSMLLASLMAYSRLSSDSELIALRSIGVSIYRLVVPALLFGIVVTGIAFVFND 139

Query: 120 IIEP-KCRSTIKQLSAKAQLALTFSYLEE------NLFFRLDDD------LYIKISKYNP 166
            I P      +  L             +        +  + D +            ++N 
Sbjct: 140 RITPAASYEALATLDRAIHQDRPPRQEQNIIYPEYGMVRQPDGNEKNILKRLFYAEEFN- 198

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            + ++G+ I+D   +  +++  A+  S ++        DG V+  +P     +I++F+  
Sbjct: 199 GSEMKGLTILDRTQSGVNQVLTAERASWNISENTWDFYDGTVYLIAPDGSYRNIVRFRHQ 258

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNP---NPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            L    A       +  D  ++   +         +   + +        K+        
Sbjct: 259 QLALPRAPLDLASQERKDGEMTIAQSRRYLEVLRLSGDDKKVRKLEVRIQKKYALPFVCF 318

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +FGLI      +     +          +   + + +    +      +P+    L  FL
Sbjct: 319 VFGLIGAAIGVRPQNTNKATSFGICVGLIFFYYLLSFLSESMGIWGALDPFTAAWLPNFL 378

Query: 344 FCISSIFLLMIKKK 357
             I+   LL+   +
Sbjct: 379 GLIAGTILLVQSSR 392


>gi|261345122|ref|ZP_05972766.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
 gi|282566810|gb|EFB72345.1| inner membrane protein YjgP [Providencia rustigianii DSM 4541]
          Length = 365

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 136/358 (37%), Gaps = 21/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +    +  +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLLLIFFSQMSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA+L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKNVLVKAALVLAVLTALVAIANITWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+   A+     + + E  F    D++  + I +    N  + +F+   R  
Sbjct: 122 PWSSQYKEQVLGDAKANPGLAAMVEGQFKTTKDNNFVLYIGEV-KGNDFKNVFLAQLRTA 180

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + Q   +  A SG +  D   RQ ++L+ G  +  + + +D  I  F +Y    +   + 
Sbjct: 181 NEQRPSVVVADSGYMKEDANGRQVVVLDQGTRYEGTALLRDFRITDFMNYQAVVDHRTTE 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   + +  L N N    N          +EFH RLT     V+  L+        
Sbjct: 241 VRTDKVEQKTMMQLWNGNDPEIN----------AEFHWRLTIVFSVVVMALM---VVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLM 353
            +  ++ ++  +  ++ +    F   S + +  ++ +      ++       ++ +++
Sbjct: 288 EVNPRQGRVLSMIPAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLALAIVL 345


>gi|182413236|ref|YP_001818302.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
 gi|177840450|gb|ACB74702.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
          Length = 384

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 136/385 (35%), Gaps = 34/385 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPT 59
           M   + Y+ + +  +   +     FI  V  +L+  +  V +   SL +  ++   L+P 
Sbjct: 1   MNLLDRYLFKSVLFTCAAAVALFTFIVLVPNVLRDMLAYVLTGQLSLLVFARLVFTLLPL 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P          L  ++ ++E+  +   G S   +++P+L LA + S        
Sbjct: 61  ALSYALPMGMLTGVLLTLGRLSADSEVTAMRAVGLSIPRIVRPILLLAAMGSALGIYLNF 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P+ R   ++  A A  A   + +    F R      + + +      ++  ++ +  
Sbjct: 121 ESMPRARVEYERGFAAAIQANPLNLIVPKTFIRSFPGYVVYVGEK-QGGIMRDFWLWELD 179

Query: 180 -DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKD--------ISIMKFKSY 226
            + +  +   A SG  D D       + L   +V  ++  + +         S+ ++   
Sbjct: 180 AEGRVERFVRAASGRFDYDEPNNSLMLTLTQAKVESRAKENPERFEKPQLVASLGQWGPI 239

Query: 227 TLQTESANSSTIVLKANDQNLSF----------LLNPNPNNPNYRPELLET---YRSEFH 273
            L           ++   + +++             P P +     +   T       FH
Sbjct: 240 QLSLNRFFGRNAGIRMKQEWMTYGQLQAEGERLAAQPLPADAAEAKQARRTRMKLAIVFH 299

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
            ++   L      LI +    K +    R++    F        V++  + +I  ++++P
Sbjct: 300 DKINTALAVFSLALIGVPLGIKVS----RRETSANFAVAVGITLVYYLMTVVIKVLDRHP 355

Query: 334 YYIP--ILYLFLFCISSIFLLMIKK 356
            Y P  +L+L  F +    L ++ +
Sbjct: 356 EYRPDLLLWLPNFILIGFGLWLMAR 380


>gi|22124660|ref|NP_668083.1| hypothetical protein y0747 [Yersinia pestis KIM 10]
 gi|45440496|ref|NP_992035.1| hypothetical protein YP_0644 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594884|ref|YP_069075.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
 gi|108808932|ref|YP_652848.1| hypothetical protein YPA_2941 [Yersinia pestis Antiqua]
 gi|108810813|ref|YP_646580.1| hypothetical protein YPN_0648 [Yersinia pestis Nepal516]
 gi|145600504|ref|YP_001164580.1| hypothetical protein YPDSF_3250 [Yersinia pestis Pestoides F]
 gi|153948230|ref|YP_001402496.1| permease [Yersinia pseudotuberculosis IP 31758]
 gi|153997518|ref|ZP_02022618.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162420063|ref|YP_001608339.1| hypothetical protein YpAngola_A4048 [Yersinia pestis Angola]
 gi|165925825|ref|ZP_02221657.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936618|ref|ZP_02225185.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010128|ref|ZP_02231026.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214282|ref|ZP_02240317.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398727|ref|ZP_02304251.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420598|ref|ZP_02312351.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423158|ref|ZP_02314911.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170025893|ref|YP_001722398.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893894|ref|YP_001871006.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930456|ref|YP_002348331.1| hypothetical protein YPO3440 [Yersinia pestis CO92]
 gi|229839084|ref|ZP_04459243.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896572|ref|ZP_04511739.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|229899647|ref|ZP_04514788.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901016|ref|ZP_04516140.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|270489196|ref|ZP_06206270.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294505144|ref|YP_003569206.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
 gi|21957469|gb|AAM84334.1|AE013676_7 hypothetical protein y0747 [Yersinia pestis KIM 10]
 gi|45435353|gb|AAS60912.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588166|emb|CAH19772.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
           32953]
 gi|108774461|gb|ABG16980.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780845|gb|ABG14903.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115349067|emb|CAL22029.1| putative membrane protein [Yersinia pestis CO92]
 gi|145212200|gb|ABP41607.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289155|gb|EDM39235.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152959725|gb|ABS47186.1| putative permease [Yersinia pseudotuberculosis IP 31758]
 gi|162352878|gb|ABX86826.1| putative permease [Yersinia pestis Angola]
 gi|165915267|gb|EDR33877.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922437|gb|EDR39614.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991035|gb|EDR43336.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204514|gb|EDR48994.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961404|gb|EDR57425.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051231|gb|EDR62639.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057328|gb|EDR67074.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752427|gb|ACA69945.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696920|gb|ACC87549.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682355|gb|EEO78447.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|229687139|gb|EEO79214.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695450|gb|EEO85497.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700350|gb|EEO88382.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|262367137|gb|ACY63694.1| hypothetical protein YPD8_3022 [Yersinia pestis D182038]
 gi|270337700|gb|EFA48477.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294355603|gb|ADE65944.1| hypothetical protein YPZ3_3035 [Yersinia pestis Z176003]
          Length = 364

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 128/361 (35%), Gaps = 19/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L      +           R+EFH RLT  +  VI  L+         
Sbjct: 242 SSNGADQMSMKELWRSQEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +  ++ ++  +  ++ +    F   S +  K   N    P+++++    + + L +I   
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKAG-NGQLDPLVWMWAVNGAYLALAIILNL 347

Query: 358 Y 358
           +
Sbjct: 348 W 348


>gi|167470530|ref|ZP_02335234.1| putative permease [Yersinia pestis FV-1]
          Length = 337

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 122/345 (35%), Gaps = 19/345 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        +   A+   + + L    F   +D                 +F+   R   
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNVAGKEFNRVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q +ILN G  +  + + +D  I  F  Y           
Sbjct: 182 NQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGTALLRDFRITDFVDYQAVIGHKQVQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+  ++  L      +           R+EFH RLT  +  VI  L+         
Sbjct: 242 SSNGADQMSMKELWRSQEPDA----------RAEFHWRLTLIVSVVIMALL---VVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +  ++ ++  +  ++ +    F   S +  K  +     P+++++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLIFFLLQSSLRSKAGK-GQLDPLVWMW 332


>gi|257452883|ref|ZP_05618182.1| hypothetical protein F3_07439 [Fusobacterium sp. 3_1_5R]
 gi|317059425|ref|ZP_07923910.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685101|gb|EFS21936.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 358

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 1   MKIIDSYILKECRGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDVARILSFYVPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R++E + +++ G     ++KP+L L I    F+   +  
Sbjct: 61  LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    ++ L++K         L+E  F    +   + I K   +    GI I ++ +
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVGRDKHASGILIFENDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                I      +   D  +IIL                   F+   ++ ++  ++    
Sbjct: 181 KTIFPIVLVGHQAYWRD-SSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQIK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V +    ++  LL           E    Y+ E +++L      V+  ++ ++ +     
Sbjct: 240 VKEIEMMSIGTLLR---EMKGKSKEEKLIYKVEINRKLALPFSSVMLSVLGVLLSIGHQR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +R  I    +++     +      + +  +        L   L    +  L ++KK+ 
Sbjct: 297 SGKRAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYIVKKRR 356


>gi|257466752|ref|ZP_05631063.1| hypothetical protein FgonA2_04880 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917901|ref|ZP_07914141.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691776|gb|EFS28611.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 358

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 129/360 (35%), Gaps = 6/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 1   MKIIDSYILKECRGPIILSVSIFTFIFLLDIIVAMMENIIVKGISVFDIARILSFYVPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      +   R++E + +++ G     ++KP+L L I    F+   +  
Sbjct: 61  LTQTIPLGLFVGIMITFSKFTRSSEAIAMNSIGMDIRAILKPILTLGIASMFFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    ++ L++K         L+E  F    +   + I K   +    GI I ++ +
Sbjct: 121 IIPRSYIKLQYLASKIAYENPVFQLKERTFMNNLEGYSLYIDKVERDKHASGILIFENDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSSTI 238
                I      +   D  +IIL                   F+   ++ ++  ++    
Sbjct: 181 KTIFPIVLVGHQAYWRD-SSIILERANFISFDEKGVRKLTGSFEDKRVELQAYFSDLQIK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V +    ++  LL           E    Y+ E +++L      V+  ++ ++ +     
Sbjct: 240 VKEIEMMSIGTLLR---EMKGKSKEEKLIYKVEINRKLALPFSSVMLSVLGVLLSIGHQR 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +R  I    +++     +      + +  +        L   L    +  L ++KK+ 
Sbjct: 297 SGKRAGILVGILTIFFYICLLNVGIVLANVGKIPILLGVWLPNVLLAALTYRLYIVKKRR 356


>gi|313200017|ref|YP_004038675.1| permease [Methylovorus sp. MP688]
 gi|312439333|gb|ADQ83439.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 355

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 131/348 (37%), Gaps = 24/348 (6%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           + + L +  I    ++   I + +  + + + +  + G+ +   LPM+      +     
Sbjct: 5   IGAFLVLFGIVIAQRVAYYIGVAAKGSLASDAINTLLGFSMLKFLPMILSLTIFLAVLLT 64

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           LT  +R++E+++  ++G      I+PVL  AI +   + +    + P   +   +   + 
Sbjct: 65  LTRWHRDSEMVVWFSSGMGLAGWIRPVLTFAIPVVAVIAVLSLFVTPWATNKGSEFRDQL 124

Query: 137 QLALTFSYLEENLFFRLDD-DLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +     + +   +F    + D    +  ++   N ++ IF+   +  +   +  +Q    
Sbjct: 125 KSRDELASISPGVFKESRNADRVFFVESFDELGNVVKNIFVQSVQHQRLGVVVASQGHRT 184

Query: 195 DLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL- 251
             D     +++  G  +   P + + S  +F+ Y+++ E                  LL 
Sbjct: 185 VADNGDNFLVMEHGRRYEGKPNTAEFSTTEFERYSIRIEPNEVKEEPPGTAALGSVELLK 244

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N NP N            +E   RL     P+   L+ ++A     +  +  +   + ++
Sbjct: 245 NHNPANN-----------AELQWRLA---IPISAFLLVLLAIPLSFVDNRSGRSANMMLA 290

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIK 355
           L I   ++     I+          P++ L+     F + +I++   +
Sbjct: 291 LLIYI-IYNNMLSIVQAWLTQGKLNPVVGLWPVHVFFLLLTIWMFYRR 337


>gi|86131956|ref|ZP_01050553.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
 gi|85817778|gb|EAQ38952.1| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
          Length = 552

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 15/259 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI     ++FL     ++FI  +  +   I  ++      +++LK   + +P++
Sbjct: 1   MKILDRYIFFTFVKTFLSIFTILMFIFVLQSVWLYIQELAGRDLDFDVILKFLLFAMPSL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +     +   N E   + +TG S    +K V+F  I L I  F+  N 
Sbjct: 61  VTLVLPLSVLLTSIMTFGNFAENYEFAAMKSTGISLQRAMKSVIFFIIFLGIASFLFANY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDS 178
           + P  +   + L            +    F  + DD  +++++   + +  L+ + I   
Sbjct: 121 VIPASQYEFRNLRNNIGKMKPAMLIRSGQFNEVGDDFNMRVAEKYGDRDQYLRDVVIHQK 180

Query: 179 RDT--QTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKD-------ISIMKFKS 225
                  + +  A+ G    SID    ++ L +G  + +    K         +   F++
Sbjct: 181 EKGRLGNYTVIVAKEGELISSIDSPTLSLQLKEGNYYTEVQKKKTKEKLKEPFAKSYFET 240

Query: 226 YTLQTESANSSTIVLKAND 244
           YTL  + +   +  L A D
Sbjct: 241 YTLNIDLSALDSEDLDARD 259


>gi|146283386|ref|YP_001173539.1| permease [Pseudomonas stutzeri A1501]
 gi|145571591|gb|ABP80697.1| predicted permease [Pseudomonas stutzeri A1501]
          Length = 373

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 130/357 (36%), Gaps = 27/357 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +LL I G+ +P  L ++ 
Sbjct: 5   RYLSRELLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLLLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L++  +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSMAPAALVAALVGWLSLGLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDS---RD 180
            + + ++  +      F  L    F  L          + + + + L G+FI ++   R 
Sbjct: 125 IAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNVSRQ 184

Query: 181 TQTH---KIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           T       +  A+SG   I  D    +IL +G  +  +P   D   +++ +Y +      
Sbjct: 185 TGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  + +        LL  +             +R+E H RL+  L   +  ++++  A 
Sbjct: 245 VSMELSEREAMPTRELLGSD----------NLRHRTELHWRLSLPLLVFVVTVLAVPLA- 293

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   RQ + +  +   L   +  +      +            + L L+ +  +FL
Sbjct: 294 -KVNPRQGRFLKLLPAIL--LYMTYLALLIAVRGALDKGRLP--MALGLWWVHGLFL 345


>gi|145300687|ref|YP_001143528.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853459|gb|ABO91780.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 370

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 117/346 (33%), Gaps = 18/346 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R   ++ L     ++ I    Q ++ I   +       ++  +    +  +  ++ 
Sbjct: 7   RYLFRETLKTQLAVLFVLLLIFVSQQFIKIIGDAADGEVPTRLVSTLLLLNLSNMALLML 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++   G S   +++  + LA+L +     +   I P+ 
Sbjct: 67  PISLFLAILFAHGRLYAESEMTVLHAVGFSHRFVMRCAMVLALLTAAVAAFNTGWIAPQA 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSR-DTQ 182
           +    Q+  + +     S+L+   F  LD   L   I + N   + LQ IF++    D +
Sbjct: 127 KEREYQVIDEFKADPGISFLQAGRFMELDKGRLVAYIQELNDKASLLQKIFVLQRSHDGK 186

Query: 183 THKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
              +  A  G + LD      + L DG  +     ++   I +F  Y+L           
Sbjct: 187 PPSVVVATEGVVTLDSNGLQWLTLKDGSRYEGHFSTRQFQISEFDEYSLVIRQQEMERSN 246

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            KA  +    LL    N             +E   R++  L  ++   + +  A  R   
Sbjct: 247 RKAAARPTVDLLGTQDN----------GMMAELQWRISLPLSILVLTFLVVPLA--RVNP 294

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           RQ +    +   L          +           + P ++L    
Sbjct: 295 RQGRYAKLLPAILLYLSYFLLLSAARSAIDSGRLPHWPGMFLVPLV 340


>gi|165976525|ref|YP_001652118.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165876626|gb|ABY69674.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 334

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 108/326 (33%), Gaps = 21/326 (6%)

Query: 35  RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGT 94
            +N   S     +++L + G  +P +   + P    +     L      +E+ ++   G 
Sbjct: 1   MLNSAVSGKVPTDLVLSLLGLGMPALAQFMLPLSLFVALLLTLGRFYAESEITVMRACGI 60

Query: 95  SRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD 154
            +  L K   FL+I  +     +   + P   +   ++ A+A+    FS L    F    
Sbjct: 61  GKSLLTKVAFFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKSNPRFSALSAGQFMT-A 119

Query: 155 DDLYIKISKYNPN-NTLQGIFIV--DSRDTQTHKIYYAQSGSID---LDRQAIILNDGEV 208
               + I   N   N L  I++   D +      +  A+SG +       Q + L +   
Sbjct: 120 GGYVLFIENINNEQNKLNDIYVFQPDQQKKNRPSVVVAESGQLQGLPNGDQILTLENSTR 179

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
           +  +    D  I  F SY       +  +        + + L+           +     
Sbjct: 180 YEGTANVADFRISHFDSYQAYLGYQDVDSNEKLVQRADFNKLM----------ADQSNEA 229

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IH 327
           ++E   R    L      L++++A    ++  ++ +   +  ++ +    F   S +   
Sbjct: 230 KAELQWRFALIL---AVPLMALLAVPMSSVNPRQGRFAKVIPAVLLYLIYFLLQSSLKSS 286

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLM 353
                     ++ L       + ++M
Sbjct: 287 GASGKLDATLLMPLVSIAFFILAMVM 312


>gi|226943298|ref|YP_002798371.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226718225|gb|ACO77396.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 376

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 136/358 (37%), Gaps = 27/358 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +       ++ I    + ++ +   +       +LL+I  Y +P+ L 
Sbjct: 5   IIPRYLSRELLMTLGAVSAVLLAIIMSGRFIKYLAQAAQGLLDPGVLLQIMLYRVPSFLE 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +  ++E+ ++  TG S   L    L  AI ++  +      + 
Sbjct: 65  LILPLGLFLGILLAYGRLYLDSEMTVLAATGMSPQRLAVYTLVPAIPVAALVAWMSLGLA 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVD--- 177
           P+    ++QL  + +    F  L    F  + D      +     + T L  +FI +   
Sbjct: 125 PQGIRLVEQLLNEQKALTEFDTLVPGRFQTMKDGSRVTYVEDLTDDRTELSRVFISEKQM 184

Query: 178 SRDTQTHK---IYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           SRD    +   +  A+ G   +  D    +IL +G  +  +P   D  ++++ +Y +   
Sbjct: 185 SRDGGKERGIAVLVAEGGRQEVQADGSRYLILQNGYRYDGNPGEADYRVIRYDTYGVLLA 244

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               S+ + +      S L+  +             +++E   RL+  L   +F +  + 
Sbjct: 245 RPAVSSEINEREAIPTSELIGSDQP----------RHQAELQWRLSLPLL--VFVVAVLA 292

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               RA  RQ + +  +   L     + +  + I  + E +   IP+L + L+ +  +
Sbjct: 293 VPLARANPRQGRFLKLLPAIL---LYMAYLATLIAVRGELDKGKIPML-IGLWWVHGV 346


>gi|296104924|ref|YP_003615070.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059383|gb|ADF64121.1| permease YjgP/YjgQ family protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 359

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 126/355 (35%), Gaps = 19/355 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  IP +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVKILGAAVDGEIPTNLVLSLLGLGIPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAAVNVMWAGPMSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  D   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATDGNSVLFIESVDGSKFNDVFLAQLRTKGNARPSV 180

Query: 187 YYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG +       Q + LN G     + + +D  I  F++Y         +       
Sbjct: 181 VVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIGHQAVALDPTDTE 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N +           +  R+EFH R+T         +++++      +  ++ 
Sbjct: 241 QMDMRTLWNTD----------TDRARAEFHWRIT---LVFTVFMMALIVVPLSVVNPRQG 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           ++  +  ++ +    F      I          P+++ +      I L +    +
Sbjct: 288 RVLSMLPAMLLYLIYFL-LQTSIRSNGAKGKLDPMVWTWFVNSLYILLALGLNLW 341


>gi|317046771|ref|YP_004114419.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
 gi|316948388|gb|ADU67863.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
          Length = 396

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 123/354 (34%), Gaps = 17/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 32  IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLTLLGLGVPEMAQ 91

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  +  L+K  + L +L SI   I+   + 
Sbjct: 92  LILPLSLFLAILMTLGRLYTESEITVMHACGLGKSVLVKSAMILMLLTSIVAAINVIWLG 151

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + L    F    D   +   +    NT   +F+   R   
Sbjct: 152 PWSSRYQDEVTQNAKANPGAAALAAGQFQTSSDGNAVLFVEDVRGNTFGNVFLAQLRPKG 211

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG ++      Q + L+ G     + + +D  I  F  Y        +  
Sbjct: 212 NARPSVVLADSGHMEQRPDGSQIVTLDKGTRFEGTAMLRDFRITDFVDYKALIGYKQAVL 271

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A   ++  L     N+P        T+ +E + RLT     +I  L+ +       
Sbjct: 272 DPNDAEQADMRSLWQ--SNDP--------TFTAELNWRLTLVFSVLIMALMVVP--LSVV 319

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             RQ + +  +   L          S   +  +        +++  F   ++ +
Sbjct: 320 NPRQGRVLSMLPAMLLYLIFFLLQSSLKSNSAKGKFDPTLWMWVVNFAYLALAV 373


>gi|124267132|ref|YP_001021136.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
 gi|124259907|gb|ABM94901.1| putative transmembrane protein [Methylibium petroleiphilum PM1]
          Length = 363

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 135/362 (37%), Gaps = 19/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R + RSF  + + I+ I   + +++ +   +  + +   +  + GY+    LP
Sbjct: 2   LFDSTLRRDLARSFGATLVVIMTIVITMFLIRTLGQAAGGSVAAQDVALLLGYVALENLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     LT M R++E++I   +G   +  + PVL L   L + + +    + 
Sbjct: 62  TILSLSLFIAVVTTLTRMYRDSEMVIWFASGVGLLRFVPPVLRLTAPLLLLVALLALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P     I +L  + Q     + +    F    D      I +      +     V  R  
Sbjct: 122 PWGNRQIAELKDRYQRRSDVARVAPGQFQSSADGKRTFFIERDTGEGNIARNVFVLERKP 181

Query: 182 QTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSY-TLQTESANSSTI 238
            +  +  A++G I  D D++ ++L  G+ +  +  + +  + +F SY  L  E+ +S   
Sbjct: 182 DSESVTSARTGRIEMDGDQRFVVLESGQRNDINLATGERKLAQFDSYRVLAGEAVSSGAD 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L    ++   LL    N           +  E   R+   +  +   L+ I        
Sbjct: 242 NLPPKARSTWDLLTQPSN----------RHFGELAWRIGLAVGGINLVLLGI--GLAGGN 289

Query: 299 VRQRKKIHPIFISLSISF---GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+    + +F  L+       +    +++     +    + +++   F ++   L   +
Sbjct: 290 PRRAGSWNLLFALLAFVVYFNLLNLSQAWVASGKLEIGIVLLLIHGGSFVLAVSLLWWRE 349

Query: 356 KK 357
           + 
Sbjct: 350 RG 351


>gi|260062764|ref|YP_003195844.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
           HTCC2501]
 gi|88784332|gb|EAR15502.1| hypothetical protein RB2501_14279 [Robiginitalea biformata
           HTCC2501]
          Length = 559

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 15/248 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YIL+    +F  S + ++FI     I   I+ ++     + I+ K   YL+P +
Sbjct: 1   MRILDQYILKRFLTNFFSSFVILMFIFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +     +   N E   +  +G S    + P++    LL    F   N 
Sbjct: 61  TEKVLPLTVLLSSILTFGAFAENYEFAAMKASGISLQRSMLPLIVFVSLLGFVTFYFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
           + P     I  L          + + E +F    +   IK+ +    N   L+ + I + 
Sbjct: 121 VIPISEQKIYNLRRNIATLKPAAVITEGVFSD-FEGKNIKVDRKYGENDRFLENVVIHEK 179

Query: 179 RDTQTHKIYY-AQSGSIDLDRQ----AIILNDGE-VHRKSPISKD------ISIMKFKSY 226
            + Q +     A +G +          ++L DG   H  +  S         +   F +Y
Sbjct: 180 SNLQRNTTVIKAATGELISGEGSDIIQLVLRDGHYYHEMTQASGSNQRTHPFAKADFDTY 239

Query: 227 TLQTESAN 234
            +     +
Sbjct: 240 IMNIALPD 247



 Score = 39.6 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
            H +    L  +I      V A   A++R+     P+ +++ + F  ++ F    +   +
Sbjct: 445 LHNKFALALSCIILF---FVGAPLGAIIRKGGLGLPMVVAI-VLFLAYYFFGVFSNNYAK 500

Query: 332 NPYYIPIL--YLFLFCISSIFLLMIKK 356
                P+L  +L    +  + + + ++
Sbjct: 501 EGNIPPVLGAWLPTMIMLPLGVWLTRR 527


>gi|255012652|ref|ZP_05284778.1| hypothetical protein B2_02000 [Bacteroides sp. 2_1_7]
          Length = 641

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 83/198 (41%), Gaps = 2/198 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    ++PM  P 
Sbjct: 1   MLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFLVPMALPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              + +     ++    ELL + + G S I +++P++   + +S+  F  +N + P  + 
Sbjct: 61  AILLASLMTFGNLGERLELLAMKSAGVSLIHIMRPLIVTLLFVSVGAFFFQNNVMPVVQV 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT-QTHK 185
            +  L    +       + E  F++      + + K +P +  L+ + I D  +     +
Sbjct: 121 KLYTLLYSMRQKSPELDIPEGSFYKDIPGFNVYVKKKDPKDGLLKDVMIYDYSEGFNNAR 180

Query: 186 IYYAQSGSIDLDRQAIIL 203
           +  A SG +      + L
Sbjct: 181 VIVADSGRLKTSADKLFL 198



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  Y+   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ +  
Sbjct: 368 DEAYK---VRRHLTEWHKKFTVSFACIMFFFIG---APLGAIIRKGGLGVPVVISVILFI 421

Query: 317 GVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIKK 356
             +   +          +     ++L    ++ + + +  K
Sbjct: 422 FYYIIDNMGFKMARDGVWDAWEGMWLSSVVLTPMGIFLTYK 462


>gi|270265132|ref|ZP_06193395.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
 gi|270041066|gb|EFA14167.1| permease YjgP/YjgQ family protein [Serratia odorifera 4Rx13]
          Length = 364

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 130/356 (36%), Gaps = 19/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +          N++L +    +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFCQNLVKVLGDAVDGNVPTNLVLSLLALGVPKMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + TLI   + LA++ S    ++     
Sbjct: 62  LILPLSLFLGLLMTLGRLYTDSEITVMHACGLGKRTLIIAAMVLALITSAVAAVNVFWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P        + ++A+   + + L E  F    D   +        +T   +F+   R   
Sbjct: 122 PVASRYQDVVISEAKANPSIAGLAEGQFKPSQDGNAVLFIGNVKGSTFNDVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G I+      Q + L+ G     + + +D  I  F  Y         + 
Sbjct: 182 NQRPSVVVAERGKINQLKDGSQVVTLDKGTRFEGTALLRDFRITDFNDYKAVVGHRAVAI 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   ++  L   +  +           R+EFH RLT     +   +++++      
Sbjct: 242 DGNQAEQMSMQALWQSDDPDA----------RAEFHWRLT---LVLSVAIMALLVVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +  ++ ++  +  ++ +    F   + +     +     P+++L++   +   + +
Sbjct: 289 VNPRQGRVLSMLPAILLYLIFFLLQTSLRSNGGK-GKLDPMIWLWVVNAAYFAIAL 343


>gi|325278209|ref|ZP_08143702.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
 gi|324096649|gb|EGB95002.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
          Length = 371

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 114/318 (35%), Gaps = 23/318 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+++ +      + P  
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTMAPAALVALLVAWLSLSLAPLG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++Q+ A+      F  L    F  L D        + + +   L G+FI + R    
Sbjct: 125 VAQVQQIIAQQDTLTEFDTLVPGRFQMLRDGSRVTYTEQLSDDRVKLGGVFISEKRFNQD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   I  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 185 KTKDRAPSVLVAEKGHQEIQADGNRYLVLENGYRYDGNPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +        L            +     R+E   RL+  +   +  L+++    
Sbjct: 245 VAEEVTEREAIPTLDLF----------GKTDLRERAELQWRLSLPILVFVVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISL 312
            R   RQ + +  +   L
Sbjct: 293 SRVNPRQGRFLKLLPAIL 310


>gi|304437499|ref|ZP_07397457.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369549|gb|EFM23216.1| permease YjgP/YjgQ family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 376

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 135/373 (36%), Gaps = 24/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P 
Sbjct: 15  IRILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPG 74

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +      ++ ++E+  + + G     +  P + L  L+S+   +   
Sbjct: 75  VVMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFLVSVGAILFNE 134

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPN-NTLQGI- 173
            + P+  +  + +        +    +E++  +  +       +    YN     L G+ 
Sbjct: 135 HVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYNAEQQQLTGVS 194

Query: 174 ---FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
              F  D + +      YA+           I++ G+V+  +    +   M+F++  L  
Sbjct: 195 LQIFGADGKVSHVENAEYAE-----WTGSEWIMHKGDVYDIADEHLE-RRMRFETQVLPV 248

Query: 231 ESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           E      I  +    +  +  L +        +        +E ++R++  +  +IF LI
Sbjct: 249 EKDPRQIIREQKSPEEMTMRELRHQ-IALMQTQYVNTSKLEAELYQRVSVPMASLIFTLI 307

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCIS 347
            +    +      R      F    I   +++    + +   +     P+L ++    + 
Sbjct: 308 GVPLGLQPT----RNSSSAGFAMSVIIIFIYYALMTMGNAFARGEVLPPMLAVWIPNIVG 363

Query: 348 SIFLLMIKKKYTK 360
            I  +++ ++ ++
Sbjct: 364 IIAGIILLRRASR 376


>gi|326335584|ref|ZP_08201771.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692350|gb|EGD34302.1| YjgP/YjgQ family permease [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 481

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 14/250 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL     +F+ S L I+ I     I   I+ ++    S+ I++K    ++P +
Sbjct: 1   MKILDRYILSRFIFNFVSSFLIIILIFIFQTIWLYIDELAGKGLSIFIIIKFVALMLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P++ P    + +   L +   + EL  +  +G S +   + ++   +LLSI +F + N 
Sbjct: 61  IPLILPLTVVLSSIMTLGAFGESYELAAMKASGVSLLKGTRTLILFMLLLSIGVFFTFNN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
           ++P        L    +       + + +F  + D   IK+ K    N   L  I I   
Sbjct: 121 LQPWSNRKAVALRDSIKNKQPSLAISQGIFNNVQD-FSIKVEKKTGENGEFLHDIVIHKL 179

Query: 179 R-DTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKD-----ISIMKFKSYT 227
             D  +  +  A+ G +   ++      +IL DG  +     +           KF+ +T
Sbjct: 180 GVDGLSRTVIKAKEGELSGHKKGSNVLQLILKDGTYYEDVKSANSDITFPFVKAKFQVHT 239

Query: 228 LQTESANSST 237
           L  + ++ +T
Sbjct: 240 LNIDISSLNT 249



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L+ N +N  Y+ +L+  YR  F  ++   +   +      VAA   A++R+     P+ +
Sbjct: 352 LDNNKDNVEYQQKLINIYRLTFSDKIALAITCFVLF---FVAAPLGAIIRKGGIGMPLVV 408

Query: 311 SLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLLMI 354
           ++ +    ++      +       NPY  P +  F      I+L ++
Sbjct: 409 AIGLFLTYYFSGLLTKNMATNGNINPYIAPWIPTFFLLPLGIYLTIL 455


>gi|260779401|ref|ZP_05888292.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604491|gb|EEX30791.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 367

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 132/370 (35%), Gaps = 26/370 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     +  +    ++++ +   S      ++++      +P++  
Sbjct: 2   IIVRYLIRETLKSQLAIFFILFLVFLSQKLIKVLADASDGDIPASLVMHYVSLSMPSMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++  +    +  +  
Sbjct: 62  LMLPLSLFLGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLAVITGVIAAANAFVFS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +  + QL  + +   +   L++  F    D   +          L+ +F+     RD
Sbjct: 122 PMSQEKLIQLQEEVEAENSVDLLQKGQFQGTPDGSSVVFIDDIEGKQLKHVFVAQMRPRD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    + ++QSG +      RQ I + DG  +   P   D  +  F  Y       +   
Sbjct: 182 SILPSVSFSQSGEVKELSDGRQVIRMYDGTRYEGVPTRVDYMVTDFDQYEGLIGQRDVKP 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       L+ NP+P             ++E   R++     V   L++++     
Sbjct: 242 KGRDWEAIPTMQLVSNPDP-----------RAQAELQWRIS---LVVCIPLLTMLVVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPI----LYLFLFCISSIF 350
           A+  ++ +   +  ++ I    F   S     +E    P +I +      L L  I    
Sbjct: 288 AVNPRQGRFAKMGPAILIYLAYFLSISATKSALEDGSIPSFIGMWPINAALLLTAIGINS 347

Query: 351 LLMIKKKYTK 360
           +  I  +  K
Sbjct: 348 MDSIPMRRFK 357


>gi|269121333|ref|YP_003309510.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
 gi|268615211|gb|ACZ09579.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
          Length = 364

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 132/367 (35%), Gaps = 10/367 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    +       FI  +   +  +  + ++     +++    YL+P V
Sbjct: 1   MKIIDKYIYKALILPSVFGISIFTFILIINVFIDIMEKLFTNDLPFLLVIDYFIYLVPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +       + +   E++ I++ GTS   + +P +   ILL++     E  
Sbjct: 61  LTQTIPMGAFLGVMLTYGNFSETNEIIAIESAGTSLFRITRPAIIFGILLTVLGLFMEIE 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSR 179
           + P+  + I         +   S  E  +F    D      + + + +      F++  R
Sbjct: 121 VNPRALNNINIEKRNLFSSKPSSLTEAKVFLSNSDAGFGFYVDEVDNSKAEASKFVLFQR 180

Query: 180 --DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             + +   +++A+    +     +   +G    K+   K ++  + +   + T       
Sbjct: 181 TKEGEYPTVFFAEKAKFEAGYMLLKNVEGFNFDKTGDRKVVARYEEQYLPMSTFFKQEDI 240

Query: 238 IVLKANDQNLSFLLNPNPNN--PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                ++ NL  L      +       E    Y  ++++R+      V   L+  +    
Sbjct: 241 EKKSRSEMNLRELREAYKQSIAEGESYEDSVKYMIKYNERIIGPFASV---LLCWLGVLL 297

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFL-LM 353
               ++  K     ISL + F      SY    +++N       +++  F +  + L L 
Sbjct: 298 AVSNKRSGKGISFGISLIVIFAYIGLASYAKIVVQKNHIDPNIAMWMPNFILLVLCLVLS 357

Query: 354 IKKKYTK 360
           IKK  ++
Sbjct: 358 IKKSRSR 364


>gi|262370181|ref|ZP_06063508.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315220|gb|EEY96260.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 366

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 130/362 (35%), Gaps = 19/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +       IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++      +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLGRLLIPMTVVFLAVQAVLMLWMA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDT 181
           P      +QL+    +   F  +    F        I     + +   L+ IF     + 
Sbjct: 122 PWGVRQFEQLTTSQAVRTGFDLVRPKEFISSGP-YTIYAGDLSEDRKNLKDIFFYQRAEA 180

Query: 182 QT--HKIYYAQSGS---IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +     +  A+  +   I+ D   ++ L  G  +   P     S  +F+SY L+ E+   
Sbjct: 181 EGKPDVMILAKEATRVEIENDPANVVDLVQGRRYEIYPGQPRYSQAEFQSYRLRLENDKE 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +       +   +  L  N N+P           SE   R+     P    +  ++A   
Sbjct: 241 AKFESADVEALSTMKLWDNRNDPVVA--------SELGWRI---FVPFAIVVALLLAVAL 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +  ++ +   +F +L I   +      I  ++ +    I    L L   +    L  +
Sbjct: 290 SEVSPRQGRYLKLFPALLIFASLIVALMAIKTRVSKEEVGIGAYPLILVIYAIAAALFSR 349

Query: 356 KK 357
           K+
Sbjct: 350 KQ 351


>gi|87302818|ref|ZP_01085629.1| possible permease [Synechococcus sp. WH 5701]
 gi|87282701|gb|EAQ74659.1| possible permease [Synechococcus sp. WH 5701]
          Length = 401

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 124/359 (34%), Gaps = 24/359 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  V  + + +  V+ S   L   L++ G  +P  L
Sbjct: 29  LMDRWLTNELMGPLLFGVAAFTAVSLSVGVVFELVRRVAESGLPLLTALQVLGLRMPGFL 88

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    ++++ N+EL+ + + G S   ++ P L +A+L+S+  F+  ++I
Sbjct: 89  VLSFPMATLMATLLAYSTLSSNSELIALRSVGVSTWRMVLPALIVAVLMSLLTFVFNDLI 148

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDL-----------YIKISKYNP 166
            P           +A      +    N     F R    L                ++  
Sbjct: 149 VPSANLEATNTLNQALGKAIAAEKGSNIIYSRFSRRPSKLDESGSERYLSQLFYSRQF-K 207

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS- 225
           +  ++ + ++D       +I  A++G+ + +       DG++          S  KF   
Sbjct: 208 DGEMEEVTVLDFSRPSGTQILKAKTGTWNDEAGMWEFRDGQIVLVGDSETTTS-AKFDRY 266

Query: 226 -YTLQTESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            Y L       + +   A   ++S  L            +     R    ++       +
Sbjct: 267 LYPLDQGPLKLAALPKDAASMSVSEALRAETLLREAGDQKEARRLRVRIQEKFAFPAICL 326

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +FGLI      +     +  +     IS+ + F  +   S+I   +       P+L  +
Sbjct: 327 VFGLIGSSLGVRPNA--RTSRSQGFGISVLLIFSYYLM-SFIFSSLGVKGTLGPVLAAW 382


>gi|146313281|ref|YP_001178355.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
 gi|145320157|gb|ABP62304.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
          Length = 366

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 132/360 (36%), Gaps = 25/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQASDGSSVLFIESVDGSRFNDVFLAQIRTKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y       N + 
Sbjct: 182 NARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAVVGHQNVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L+N + N            R+E H RLT         +++++      
Sbjct: 242 DPTDTEQMDMRTLINTDTN----------RARAELHWRLT---LVFTVFMMALMVVPLSV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-------PYYIPILYLFLFCISSIF 350
           +  ++ ++  +  ++ +    F   + I     +         + +  LYL L  + +++
Sbjct: 289 VNPRQGRVLSMLPAMLLYLVYFLLQTSIKSNGGKGKIDPMIWTWAVNGLYLLLAVVLNMW 348


>gi|121611822|ref|YP_999629.1| permease [Verminephrobacter eiseniae EF01-2]
 gi|121556462|gb|ABM60611.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 372

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 133/338 (39%), Gaps = 27/338 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   +  + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I   +G    +L++P+L  A  + + + +   ++ 
Sbjct: 62  TIASLSLFIAVVGTLSRMYRDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNP--------NNTLQGI 173
           P   + I+QL  + +       +    F    +      I K NP          T   I
Sbjct: 122 PWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFFIDKGNPAPLAGNDAAQTGSNI 181

Query: 174 FIVDSRDTQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT- 230
           FI  + D +   +  A+S    +   ++  +L+DG+    S     + I +F  Y +   
Sbjct: 182 FIA-ASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG 240

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +   +   L    +    LL           + L  YR+E   RL   L  + F L+ +
Sbjct: 241 SAPPGAAEDLAVKTRATHELL----------LKSLPAYRAELGWRLGLVLAALNFVLLGL 290

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
                 ++  +  +   +  +L  +F V++    +   
Sbjct: 291 AV---TSVNPRAARSTSMLFAL-FAFIVYYNLMTLGQS 324


>gi|284929475|ref|YP_003421997.1| putative permease [cyanobacterium UCYN-A]
 gi|284809919|gb|ADB95616.1| predicted permease [cyanobacterium UCYN-A]
          Length = 382

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 113/345 (32%), Gaps = 21/345 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L +  +I    IP 
Sbjct: 8   LSVVDRYLFLELLSPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLVLTVAFQILLLKIPG 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L +  P    +      + ++ ++E++ + + G     L+ PV+    +++   F+  +
Sbjct: 68  FLSLAFPMAILLAALMAYSRLSSDSEIIALRSLGVGIYRLVIPVVIFGFIVTGCAFVVND 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNP 166
            I P        +  +A       +   N+ +     +                  +YN 
Sbjct: 128 WIAPAATHKAAIILEEAVSQKRPDFKRHNIVYPEYKTVKGKNGQESTMLTRLFHAEEYN- 186

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS- 225
              ++G+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+  
Sbjct: 187 GEEMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQ 246

Query: 226 -YTLQTESANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPV 283
              L     + +       +  +S           +   + +   +    ++       +
Sbjct: 247 QLALPRAPLDLADRRQNFTEMTISETREYLKAVQFSGNEKRIRKVKVRLQEKYAMPFVCL 306

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           IFGL+      K        +     + + + FG +         
Sbjct: 307 IFGLVGASIGVKPQNT---NRATSFGVCVGLIFGYYILAFMSTSL 348


>gi|83746689|ref|ZP_00943738.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|207721411|ref|YP_002251852.1| permease protein [Ralstonia solanacearum MolK2]
 gi|207742608|ref|YP_002259000.1| permease protein [Ralstonia solanacearum IPO1609]
 gi|83726642|gb|EAP73771.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|206586570|emb|CAQ17157.1| permease protein [Ralstonia solanacearum MolK2]
 gi|206594002|emb|CAQ60929.1| permease protein [Ralstonia solanacearum IPO1609]
          Length = 387

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 125/359 (34%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 17  IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 76

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 77  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGW 136

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++ +
Sbjct: 137 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANA-E 195

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                +  A++G         + ++L+ G  +  +P   D  I++F  Y ++  S     
Sbjct: 196 ADKIGVALAKTGEFKTMPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQV 255

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-D 294
              L    +  + LL NP P N             E   R+   L  + F LI++  A  
Sbjct: 256 DANLPTKSRPTTELLSNPTPENLG-----------ELVWRIGLPLLALNFVLIAVPLAYV 304

Query: 295 KRALVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              L R    I  + I L+ S             KI     + PI  L   C   +F  
Sbjct: 305 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKINAMLAWWPIHLLAFICAVLLFRF 363


>gi|319788014|ref|YP_004147489.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466526|gb|ADV28258.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 361

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 143/367 (38%), Gaps = 21/367 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR   +SFL + + ++ ++    ++  +  ++       +LL   G  +   
Sbjct: 1   MPKLDRYLLRDFVQSFLATLIVLLTVSLGGVLVDVLGEIADGGLPARLLLSQLGLQLLVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP+V P    +     +  + R++E+ +++  G     L++P+L   + + + + +    
Sbjct: 61  LPLVLPLALMLGLMLAVARLYRDSEMAVLNAVGVGPKRLLRPLLMAVVPVVVAVGMCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNN-TLQGIFIVDS 178
           + P  + T   +  +A  +L  + LE   F    +    + I   + +  TLQG+F+   
Sbjct: 121 LGPWAQRTAANMIEQANRSLIVAGLEPGRFTSLPNGGGIVYIDGMSEDGRTLQGVFLQRE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISK-DISIMKFKSYTLQTESAN 234
           RD +   +  A++GS++        + L DG           D  +M++    +      
Sbjct: 181 RDGRVD-VVTARTGSLEFGGDRDRFLRLADGRRLEGPLEQGLDFRLMRYAVNEVALPDRA 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                          L N          +      +E H RLT  L  + F L+++  A 
Sbjct: 240 EERADDDPAIAPTLSLFN----------DGRPAAIAELHGRLTPPLMALAFALLTVPLA- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE-QNPYYIPILYL-FLFCISSIFLL 352
            R+  RQ++    +   L+   G+   F  +    + + P  + + +L       +I+L 
Sbjct: 289 -RSSPRQQRYGRLMLGFLAYLVGLNLMFIGVRMLADGKLPAPVGLWWLTLPLMALAIWLY 347

Query: 353 MIKKKYT 359
           +   +  
Sbjct: 348 LRDGRLP 354


>gi|261855831|ref|YP_003263114.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836300|gb|ACX96067.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
          Length = 371

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 127/343 (37%), Gaps = 21/343 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR    + L   L ++ I     + + ++  +  +   +++  + G+    +
Sbjct: 1   MPILNRYLLREASVATLGVTLIVMLIMLANLLARSLSAAAEGSLPSSLIPAMMGFNAVKL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    +     L  M+R++EL ++   G     L + +L+LAI +S+        
Sbjct: 61  LIYVLPVGLFIGLMFALGRMSRDSELTVLRACGYGPRHLSQAILWLAIPVSLLTASISLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSR 179
             P  +    ++   A+    F+ L    F         + I   + N     IF  +  
Sbjct: 121 AYPALQQVQSRMIDSARSQQVFNQLPVGRFIEEPSGKAVLYIGSKSGNG-YSDIFAFNEP 179

Query: 180 DT-----QTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
                  Q   +  A  G +  D      ++L  G   +     +D S++ ++++ +   
Sbjct: 180 TNTKNARQKPGVEMAPFGKLMTDSAGHRYVVLEQGRRIQGVAGEQDWSVIDYQTHEILVP 239

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +    +    +L  L +  P +           ++EF+ RL+Q L  ++  LI++ 
Sbjct: 240 GRADTENTQENKKSSLQLLHSNLPGD-----------QAEFYYRLSQALTVLVLALIAVP 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
            A  +    +  ++   F+  ++ F +       I   E N +
Sbjct: 289 LAQAKPRSGRYGRLFWAFLLYALYFNLIALTENAIKHGELNLW 331


>gi|87124323|ref|ZP_01080172.1| possible permease [Synechococcus sp. RS9917]
 gi|86167895|gb|EAQ69153.1| possible permease [Synechococcus sp. RS9917]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 131/373 (35%), Gaps = 19/373 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  V  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLLGELIGPLLFAIAAFTVVSLSVGVMFELVRRIVESGLPVGIAVQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G S   +I P L LA++++   F+  ++I
Sbjct: 78  VISFPMATLMATLLAYSRLSANSELTALRSVGISATRMIAPALALALVMTGLTFVFNDVI 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNPNN 168
            P+   + +    +A      +    N+ +     L                  K+N   
Sbjct: 138 VPRTSLSAEITLQRALGRSVSTEKGNNIIYSRFGRLVAGDGESETGLAQLFYAKKFN-EG 196

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            + G+ ++D       ++  A     +         DG++   SP S  ++   F  Y  
Sbjct: 197 VMSGVTVLDFSRLGFTQMLVADEARWNERESKWEFLDGQILTLSP-SGSVTSADFDRYLY 255

Query: 229 QTESAN--SSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +A    + +   AN+  ++  +      +     +     R    ++ T  +  ++F
Sbjct: 256 PLSAAPIRIAKLPKDANNMTVAEAIEAERMLDEAGDRKEARRMRVRIQEKFTLPMACLVF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K      R +   I + L + + V       +      P  +      L  
Sbjct: 316 GLIGSSLGAKPNGRTSRSQGFGISVVLILVYYVLSFSFSSLGVKGTLPPVVAAWAPVLIS 375

Query: 346 ISSIFLLMIKKKY 358
           ++   LL+ +   
Sbjct: 376 LAGGGLLLRQASR 388


>gi|238927586|ref|ZP_04659346.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
 gi|238884511|gb|EEQ48149.1| permease YjgP/YjgQ family protein [Selenomonas flueggei ATCC 43531]
          Length = 379

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 129/361 (35%), Gaps = 21/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P 
Sbjct: 18  IRILDKYIFREVFLSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPG 77

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +      ++ ++E+  + + G     +  P + L  ++S+   +   
Sbjct: 78  VVMWTFPMSMLLASLLTFGRLSSSSEITAMKSCGIGFGRIAAPAILLGFVVSVGAVLFNE 137

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNT-LQGI- 173
            + P+  +  + +        +    +E++  +  +       +    Y+     L G+ 
Sbjct: 138 HVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEIEGGQIKRLVYARSYDAEQQHLTGVS 197

Query: 174 ---FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
              F  D + +      YA+           I++ G+V+  +    +   M F++  L  
Sbjct: 198 LQIFGADGKVSHVENAEYAE-----WTGSEWIMHQGDVYDIADEHLE-RRMHFETQVLPV 251

Query: 231 E-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           E +        KA ++     L         +        +E ++R++  +  +IF LI 
Sbjct: 252 EKNPRQIIREQKAPEEMTMRELRHQITLMQTQYVNTNKLEAELYQRVSVPMASLIFTLIG 311

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +    +      R      F    I   +++    + + + +     P+  +++  I  I
Sbjct: 312 VPLGLQPT----RNSSSAGFAMSVIIIFIYYALMTMGNALARGGVLPPMFAVWIPNIVGI 367

Query: 350 F 350
           F
Sbjct: 368 F 368


>gi|304413752|ref|ZP_07395196.1| inner membrane component LptF of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
 gi|304283843|gb|EFL92237.1| inner membrane component LptF of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 132/364 (36%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++   +S +     ++ I    +++  ++   +     +++L   G  +P +  
Sbjct: 2   IITKYIIKKTFKSQMAILFILLLIFISQKLIAILSETVNGEIPTHLILSFLGLGLPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +        M+   E+ ++   G S+ +LI   L LA+  +    I+     
Sbjct: 62  LVLPLSLFLGLLITYGKMHTEREITVMHACGFSQNSLILVALILAMGTAALAAINTLWFM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +   ++    +   T + L E  F    D   +             IF+   +   
Sbjct: 122 PWSVTYQGKILNDFRANPTLAALIEGQFQSSMDGKTVLFVGAVDGKKFDHIFLAQLQPDG 181

Query: 183 --THKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                I  A++G I       Q + L+ G  +  + + +D  I  FK+Y +     + + 
Sbjct: 182 SRRPSIVIAENGYIAERPDGSQIVTLDKGTRYEGTALLRDFRITDFKNYQVTINPQSITQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               +   ++  L + +  +           RSEFH RLT     +I  L+++       
Sbjct: 242 NTNTSEQMSIRSLWHSSHPDA----------RSEFHWRLTLITSVIIMALLAVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ + ++ +   L          S      +      P+L+L++   + + L ++  K
Sbjct: 290 NPRQSRTLNMLPAILLYLIFFLLQSSLRSSTAQGKLD--PLLWLWMVNGAYLALAIVLNK 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDSL 351


>gi|327481779|gb|AEA85089.1| permease [Pseudomonas stutzeri DSM 4166]
          Length = 373

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 130/357 (36%), Gaps = 27/357 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +LL I G+ +P  L ++ 
Sbjct: 5   RYLSRELLITMSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLLLIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   L  A L++  +      + P+ 
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQRRLLAYSLAPAALVAALVGWLSLGLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDS---RD 180
            + + ++  +      F  L    F  L          + + + + L G+FI ++   R 
Sbjct: 125 IAEVDRILNQQDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNVSRQ 184

Query: 181 TQTH---KIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           T       +  A+SG   I  D    +IL +G  +  +P   D   +++ +Y +      
Sbjct: 185 TGKESGLSVLVAESGRQEIQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  + +        LL  +             +R+E H RL+  L   +  ++++  A 
Sbjct: 245 VSMELSEREAMPTRELLGSD----------NLRHRTELHWRLSLPLLVFVVTVLAVPLA- 293

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   RQ + +  +   L   +  +      +            + L L+ +  +FL
Sbjct: 294 -KVNPRQGRFLKLLPAIL--LYMTYLALLIAVRGALDKGRLP--MALGLWWVHGLFL 345


>gi|297517382|ref|ZP_06935768.1| hypothetical protein EcolOP_07050 [Escherichia coli OP50]
          Length = 340

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 130/354 (36%), Gaps = 32/354 (9%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++   F++FI       + +   ++ T +L+++L I  Y +   L M+ P    +     
Sbjct: 1   MIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALEMLLPVGLYVSVGVT 60

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L  M  ++E+  I   G S   L K VL+LAI LSIF+ +      P   + I QL  ++
Sbjct: 61  LGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQS 120

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSID 195
           Q  L    L    F   D+   I     + +N  L    I  +      +I+ A+S  + 
Sbjct: 121 QSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY-TSTANRTRIFRARSVDVV 179

Query: 196 LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNP 255
                           SP    + +    +Y +  +  + +  +     +NL   LNP  
Sbjct: 180 D--------------PSPEKPTVMLHNGTAYLIDHQGRDDNEQIY----RNLQLHLNPLD 221

Query: 256 NNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
            +PN + +                +E   R ++ L      +  +  +  R   RQ +  
Sbjct: 222 QSPNVKRKAKSVTELARSVFPADHAELQWRQSRGLT--ALLMALLAISLSRVKPRQGRFS 279

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
             + ++L      + G              IP L+L    +    L+++ + ++
Sbjct: 280 TLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPGLMLMGLLMLVARDFS 333


>gi|218665831|ref|YP_002426599.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218518044|gb|ACK78630.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 373

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 106/241 (43%), Gaps = 6/241 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M    + ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+
Sbjct: 1   MTRIRMQVVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L MV P  F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I    
Sbjct: 61  LVMVLPLAFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
             P  +  ++  S +   A   + L+   F  L     I + +    N    Q IF+  +
Sbjct: 121 WAPGAQRELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVA 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +  Q      A  G +   +     ++L DG+ +   P      ++ F  Y +  ++ ++
Sbjct: 181 QGGQLDMA-TAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDT 239

Query: 236 S 236
            
Sbjct: 240 G 240


>gi|265765250|ref|ZP_06093525.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254634|gb|EEZ26068.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 636

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   ++
Sbjct: 4   IKRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+
Sbjct: 64  VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   D   +K+ + +     L  + I D  
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
           +     +I  A SG +++        + L  GE+               +R+    +  S
Sbjct: 184 NNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFREKHS 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQ 245
           I++F S       A+  +      D 
Sbjct: 244 IIQFDS-DFNMADASIMSNQSTTKDM 268


>gi|161505034|ref|YP_001572145.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866381|gb|ABX23004.1| hypothetical protein SARI_03165 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 366

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 132/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTDSD----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   I+ N       P+++++   +  + L + 
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWTVNLIYLALAIG 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|253564060|ref|ZP_04841517.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947836|gb|EES88118.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301161640|emb|CBW21180.1| putative permease [Bacteroides fragilis 638R]
          Length = 636

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   ++
Sbjct: 4   IKRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+
Sbjct: 64  VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   D   +K+ + +     L  + I D  
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
           +     +I  A SG +++        + L  GE+               +R+    +  S
Sbjct: 184 NNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFREKHS 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQ 245
           I++F S       A+  +      D 
Sbjct: 244 IIQFDS-DFNMADASIMSNQSTTKDM 268


>gi|71908694|ref|YP_286281.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
 gi|71848315|gb|AAZ47811.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
          Length = 360

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 115/343 (33%), Gaps = 18/343 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE    R   ++     + ++ I     +++ +   +    +   +  + G+     +P
Sbjct: 2   IFERAARREFAQAAAGISVALLAILTSTNLIRLLKEAAGGRIAPEAVASLLGFSALNFMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+ + R++E+++  ++G      + PVL  A  + I + +    + 
Sbjct: 62  VLLSLTLFVSVLLSLSRVYRDSEMVVWFSSGLPLTGWVSPVLRFAAPIVIAIAVVSGFLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P   S+  +   K       S +    F  +        +     + + +  +F+   ++
Sbjct: 122 PWANSSSAEYREKLSARSELSQVSPGAFREVKKGQRVFFVEGVEGDGSHVGNVFVASYQE 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   +  + SG  +        ++L  G  +   P +    +M+F+ Y  + E    S 
Sbjct: 182 GKLG-VIMSDSGYQEASGNGDRFVVLEHGRRYEVEPGTPAFKVMEFERYRARVEDGEPSP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +      ++ L+  + N            R E   R+   +  ++  L++I       
Sbjct: 241 SDVSPKGMPITRLVLEDSNPA----------RGELLWRVGLPVSALVLCLLAIP--LSYV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             R  +  + +   L  +              +    +   L+
Sbjct: 289 NPRAGRSANMLIAILVYAIYNNLLSVSQAWVAQGKMSFWVGLW 331


>gi|300772186|ref|ZP_07082056.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760489|gb|EFK57315.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 494

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 98/258 (37%), Gaps = 11/258 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L IL+   + F+++   ++F+  ++ + + I+ +        ++L++ GY     
Sbjct: 1   MKKIHLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLIGYQCAVQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P+  L  L S   F+  + 
Sbjct: 61  MQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-S 178
           I P     +  L    +       ++  +F        I+    + + T L  + I D +
Sbjct: 121 ILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI---MKFKSYTLQTE 231
             + ++ +  A+ G +          + L DG  + +S      S     +F  +  +  
Sbjct: 181 SGSSSNNVLLAKEGFVQNSPDNSYMVLKLKDGIRYEESKGKDSKSYDPRKQFVRFQFKET 240

Query: 232 SA--NSSTIVLKANDQNL 247
               +     +K  D+NL
Sbjct: 241 EQKFDMGDFQMKRTDENL 258



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L N       +R + +  YR EFH++ T  +  ++   I    A   A++R+     
Sbjct: 347 TETLGNKTLEYKAFRDKDI-RYRLEFHRKFTLAVSCLLLFGIG---APLGAIIRKGGLGL 402

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKKKYT 359
           P+ +++ I F ++   S +  K  ++    P+  +++ +  ++ + + +  K  T
Sbjct: 403 PVVMAI-IFFLIYHIISTVSEKAAKDASLAPMTGMWMAIIVLTPLAIFLTYKSTT 456


>gi|326797997|ref|YP_004315816.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
 gi|326548761|gb|ADZ77146.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
          Length = 505

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 100/257 (38%), Gaps = 10/257 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   + +L+   + F+++   ++F+  ++ + + I+ +        ++L++  Y     
Sbjct: 15  MKKVHVLVLKAFFKPFIVTFFIVMFVLLMLFLFKYIDDLIGKGFEWYVILELLWYASAAQ 74

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P++ L  L+SI  F   + 
Sbjct: 75  ISMAMPLAMLLSSIMTFGNLGESYELVAIKAAGISLRKAMMPLIILVSLISIGSFFFSDY 134

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           I P     +  L    +       +++ +F        I+    + + T L  + I    
Sbjct: 135 ILPVTNLKMGSLLYDVRNKKADFLIKDGIFNNSIPGYSIRAKNKSKDGTVLYNLIIYQHG 194

Query: 180 D-TQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISI--MKFKSYTLQTES 232
           + ++   +  A+ G +    D +   + L DG  + ++           +F  Y      
Sbjct: 195 NISRGTNVLLAKEGVMYNSRDNNYMILKLKDGVRYEETTAGDRSYNPRQQFTRYYFDQTE 254

Query: 233 A--NSSTIVLKANDQNL 247
              + ST  +K  D++L
Sbjct: 255 QKFDMSTFQMKRTDEDL 271


>gi|53711884|ref|YP_097876.1| hypothetical protein BF0593 [Bacteroides fragilis YCH46]
 gi|60680112|ref|YP_210256.1| putative permease [Bacteroides fragilis NCTC 9343]
 gi|52214749|dbj|BAD47342.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491546|emb|CAH06298.1| putative permease [Bacteroides fragilis NCTC 9343]
          Length = 636

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   ++
Sbjct: 4   IKRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+
Sbjct: 64  VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   D   +K+ + +     L  + I D  
Sbjct: 124 IGPQAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
           +     +I  A SG +++        + L  GE+               +R+    +  S
Sbjct: 184 NNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFREKHS 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQ 245
           I++F S       A+  +      D 
Sbjct: 244 IIQFDS-DFNMADASIMSNQSTTKDM 268


>gi|56479504|ref|YP_161093.1| hypothetical protein ebA7173 [Aromatoleum aromaticum EbN1]
 gi|56315547|emb|CAI10192.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 359

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 131/360 (36%), Gaps = 18/360 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + R   +S     + +  I   + +++ +   +      + +L + G+   + LP
Sbjct: 2   IFSRALQREFFQSAAGVFVALFAILITVVLIRLLGQAAGGRLPSDAVLALIGFGSLSRLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +     L+   R++E+++   +G      I+PVL  A+ + + +      + 
Sbjct: 62  IVLSLTVFIAVLLSLSRSYRDSEMVVWFASGLPLTAFIRPVLRFALPIVLTIAAVTLFVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVDSRD 180
           P  +    +  A+       S +   +F        +   +     +  ++ +F+   +D
Sbjct: 122 PWAQLKSAEYQARIDSRNDASRIAPGVFRESVGAQRVFFVETGAGEDGKVRNVFVSTEKD 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +   I  A+ GS+  D +    ++L  G  +   P S +  +++F  Y++  E   ++ 
Sbjct: 182 GRLDVIVSAE-GSLRTDAEGDRFVVLEKGRRYEGEPGSPEYRVLEFDRYSVLVEEREAAG 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              + +      LL      P    ELL         R+   +  ++  L++I       
Sbjct: 241 PASRTSTTPTLELLA--DPTPRKLGELLG--------RIGMPVAALLLALMAIP--LSFV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R  +  + +F  L+          +     +    +   ++L    + ++  LM  ++
Sbjct: 289 NPRAGRANNLLFAILTYLVYSNAISVFQAWVSQGRLRFELAVWLPHVVVLAVLALMFYRR 348


>gi|300703337|ref|YP_003744939.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299071000|emb|CBJ42309.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CFBP2957]
          Length = 372

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 125/361 (34%), Gaps = 20/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++ +
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANA-E 180

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                +  A++G           ++L+ G  +  +P   D  I++F  Y ++  S     
Sbjct: 181 ADKIGVALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQV 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-D 294
              L    +  + LL NP P N             E   R+   L  + F LI++  A  
Sbjct: 241 DANLPTKSRPTTELLSNPTPENLG-----------ELVWRIGLPLLALNFVLIAVPLAYV 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              L R    I  + I L+ S  +    +++             ++L  F  + +     
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMNAMLAWWPIHLLAFVCAVLLFRFR 349

Query: 355 K 355
            
Sbjct: 350 H 350


>gi|257454352|ref|ZP_05619615.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
 gi|257448255|gb|EEV23235.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
          Length = 385

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 129/365 (35%), Gaps = 25/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  +  +  LF++ +    ++++   + +     + +L  I GY IPT L 
Sbjct: 10  ILRRYMTQQVAANTAIVLLFLMALMLGGRLIRYFGIAAEGRLDVGLLFAIIGYNIPTFLE 69

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    VL  M  + E+ ++  +G SR  L + ++ L   L IF      + +
Sbjct: 70  LILPLSFFIALMLVLGRMYVDQEMSVLFASGISRGRLTRLMIPLITGLFIFQMGISLLAK 129

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRD- 180
           P   S  KQ+     L      +    F     + ++ + ++N     L+ +++V  +  
Sbjct: 130 PWGLSNSKQIWQTQSLGSLLDLVRPKTFIS-SGNYHLYVDEFNKEKRELKNLYVVQQQTD 188

Query: 181 -----TQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYTLQT 230
                 +   I  A        +       + L  G  +     +   +   F+ Y +  
Sbjct: 189 KSGKIAKNDVIITATRAYQVPSKDTDSSMQLDLFQGRRYELGTNNAKYNQASFEKYRITL 248

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           E   S TI     +   +  L  +   P  +        +E   R T     +I  +++ 
Sbjct: 249 EKPASETITETNVETQTTAKLLAHTQKPEVK--------AELGYRFTMPWLIIIAAMLAT 300

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             A  R    +  ++ P  +  +            I K   + Y     Y++L      F
Sbjct: 301 PLAQVRPRQGRWLRLLPSVLIFASCAISIISLRTAIGKERISEYA----YIWLIVGFIAF 356

Query: 351 LLMIK 355
            L++ 
Sbjct: 357 ALLLN 361


>gi|227536228|ref|ZP_03966277.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243835|gb|EEI93850.1| YjgP/YjgQ family permease [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 494

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 98/258 (37%), Gaps = 11/258 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   L IL+   + F+++   ++F+  ++ + + I+ +        ++L++ GY     
Sbjct: 1   MKKIHLLILQSFIKPFIVTFCIVMFVLLMLFLFKYIDDLIGKGFEWYVILQLIGYQCAVQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    + +     ++  + EL+ I   G S    + P+  L  L S   F+  + 
Sbjct: 61  MQMALPLSMLLSSIMTFGNLGESYELVAIKAAGVSLRKAMTPLFILVALFSAGSFLFSDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-S 178
           I P     +  L    +       ++  +F        I+    + + T L  + I D +
Sbjct: 121 ILPVVNLKMGSLLYDVRNKKADFLIKPGIFNNTIPGYAIRAKSKSKDGTVLNELMIYDHT 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISI---MKFKSYTLQTE 231
             + ++ +  A+ G +          + L DG  + +S      S     +F  +  +  
Sbjct: 181 SGSSSNNVLLAKEGFVQNSPDNNYMVLRLKDGIRYEESKGKDSKSYDPRKQFVRFQFKET 240

Query: 232 SA--NSSTIVLKANDQNL 247
               +     +K  D+NL
Sbjct: 241 EQKFDMGDFQMKRTDENL 258



 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L N       +R + +  YR EFH++ T  +  ++   I    A   A++R+     
Sbjct: 347 TETLGNKTLEYKAFRDKDI-RYRLEFHRKFTLAVSCLLLFGIG---APLGAIIRKGGLGL 402

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKKKYT 359
           P+ +++ I F ++   S +  K  ++    P+  +++ +  ++ + + +  K  T
Sbjct: 403 PVVMAI-IFFLIYHIISTVSEKAAKDASLAPMTGMWMAIIILTPLAIFLTYKSTT 456


>gi|53803848|ref|YP_114530.1| hypothetical protein MCA2100 [Methylococcus capsulatus str. Bath]
 gi|53757609|gb|AAU91900.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 339

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 112/344 (32%), Gaps = 23/344 (6%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           I    + L  +        + + +  + G  +   L  + P    +    VL  M R+ E
Sbjct: 3   IVVSRKFLAILARAIEGEVATDTIFTLLGLKVVVTLASLLPASVFLSVLMVLGRMYRDNE 62

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +    G   + + + +L  A  + +          P      ++L +K +       +
Sbjct: 63  MTVFACAGVGPLRIYRSILLFAGPVCVLGAFLSLQAMPWSERLSQELISKDEKGADVRGI 122

Query: 146 EENLFFRLD-DDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---I 201
           +   F      D+ +   + N + T+  +F   SR      I  A+SG ++++      +
Sbjct: 123 KAGRFNEFSQGDVVLYAEQLNTDKTMSRVF-AQSRRGDETGIVIAESGHMEINDAGDHFV 181

Query: 202 ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR 261
           +LN+G  ++  P   D  + +F++Y ++      S   LK              ++ +  
Sbjct: 182 VLNNGRRYQGVPGRADFVLNEFQAYGVRINPPEGSQAALK----------REAADSLHLW 231

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV--- 318
                   +E  +RL   L      L+++  A       +      +  +  I       
Sbjct: 232 MSGRPRELAELQRRLAVPLGTFTLTLLAVPIA---RTSPRGGVWGNLISAFLIYIIYENL 288

Query: 319 --FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
                      K+     Y  I  + L   S +       ++ +
Sbjct: 289 QKISQGLLATGKLSVWTSYAGIYAVMLLATSVLLARNSGWRWVR 332


>gi|170718034|ref|YP_001785074.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
 gi|168826163|gb|ACA31534.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
          Length = 367

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 134/358 (37%), Gaps = 24/358 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + RS +     ++ + +  Q+++ +   S      +++  +    +PT+  
Sbjct: 2   ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSASVGKIPADLVFALLSLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+   L L++L +     +   + 
Sbjct: 62  LIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIV--DSR 179
           P       QL   A+   T   L    F  + + D+ + I++   NN +Q I++   +++
Sbjct: 122 PWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEI-KNNQIQDIYVFQMENK 180

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             Q   +  A++G +       Q + L + +    S +  D  I  F  Y    +   + 
Sbjct: 181 KNQKPSVTVAETGQLKALPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +    +L  L+N    +P  +        +E H RLT      I  LI++     R
Sbjct: 241 KDTSETEILSLKELIN--SKSPAAK--------AELHWRLTLIFAVPIMALIAVP--LSR 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F  +  +  ++  +  +   ++       I       + SIF L +
Sbjct: 289 VNPRQGR-----FAKILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFL 341


>gi|294782104|ref|ZP_06747430.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
 gi|294480745|gb|EFG28520.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
          Length = 359

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 122/353 (34%), Gaps = 9/353 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGSAIFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--S 178
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +   
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             T+   +   +      +  +IIL   +        K      F    +   +     +
Sbjct: 181 DKTKFPMVLTGEEAFWKDN--SIILKQSQFISFDETGKKNLTGTFDEKRVVL-TPYFENL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LK  D     + +   N      E +  Y+ E  ++L      +   +I        +L
Sbjct: 238 NLKIKDVEALSITDLVKNIRKVEAEEVLKYKIEIFRKLALIFSTIPLAVIGFCL----SL 293

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R      F+   I    +  F  I   +       P +  +   +   FL
Sbjct: 294 GHHRISKKYSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATWTPNVLLYFL 346


>gi|168464639|ref|ZP_02698542.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632768|gb|EDX51222.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 366

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 22/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKTVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   I+ N     +  +      ++  L +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 341


>gi|284036898|ref|YP_003386828.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
 gi|283816191|gb|ADB38029.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
          Length = 501

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 99/272 (36%), Gaps = 28/272 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  +L      F ++   ++FI  +  ++  I+   S    L    ++  Y     
Sbjct: 1   MKKIDKLVLGSFWGPFFLTLGVVIFIFLMRLLMFYIDEFVSKDLDLATFGRLLFYFALLT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++    EL  + + G S    ++P+L +AI +S F F   N 
Sbjct: 61  IPTALPLAVLLSSLMTFGNLGEFFELTALKSAGISLTRAMRPLLIVAIGISAFSFWFNNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-------NPNNTLQGI 173
           + P        L    + A     L+E +F+       IK+ +           + L+G+
Sbjct: 121 VAPWANLKGYSLLYDIKTAKATLNLKEGIFYNDLPGYSIKVDRKIKAEKGSTTGDLLKGL 180

Query: 174 FIVDSR----DTQTHKIYYAQSGSI--DLDRQAII--LNDGEVHRK-----------SPI 214
            I        +T   +I  A SG +  D DR  ++  L +G  +++            P 
Sbjct: 181 VIYKHPTSGLETGNREIILADSGRMYTDKDRTYLVFQLFNGNDYQEYSDNSISYASSGPT 240

Query: 215 SKDISIMK--FKSYTLQTESANSSTIVLKAND 244
           ++    M+  FK Y L     +        N 
Sbjct: 241 AQGAQFMRNGFKDYKLVISLESFGIKRTDENQ 272



 Score = 36.5 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           + + +  Y+ E H + TQ +   +  LI    A   A++++     P+ I++     ++ 
Sbjct: 371 KEKNVWRYQLETHHKFTQAISVFVMFLIG---ASMGAIIKKGGFGLPVLIAIVFFIFLYV 427

Query: 321 GFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIKKKY 358
                    +    ++PI  +L    +    LL++++  
Sbjct: 428 LTIAGDKYAKDGLLWVPIGAWLANIVLFPFGLLLMQRAR 466


>gi|22299113|ref|NP_682360.1| hypothetical protein tll1570 [Thermosynechococcus elongatus BP-1]
 gi|22295295|dbj|BAC09122.1| tll1570 [Thermosynechococcus elongatus BP-1]
          Length = 378

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 139/367 (37%), Gaps = 16/367 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVI-QILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y+L  +   F++       +A  +  I   +  ++ +   L ILL++ GY +P VL
Sbjct: 15  KLDQYLLSLLLPGFVLGLTVFTTLALTVGTIFDLVRQIADAQLPLTILLQLIGYQLPAVL 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +V P    +     ++ ++   E + + + G     ++ PV+  A+L+S          
Sbjct: 75  VLVFPMAVLLAVVGAMSRLSEEGEWIALRSVGICLGRVLIPVVVFALLVSGLTLALNETA 134

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIVD 177
            P  +   K+L  +            ++F+   D       +        + +QGI ++D
Sbjct: 135 VPIAKYESKKLMGELLQQERSLGSGTDIFYPEYDRHGNVRRLYYGHRFDGSRIQGITVLD 194

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               Q  ++  A+S   ++     +L+ G  +  S      ++++F    ++      S 
Sbjct: 195 FSQPQVTQVISAESAEWNVRESRWLLSQGIAYLISHTGVSRNLLQFDQQEIRLPRPAQSQ 254

Query: 238 --IVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  N+ +++         +P+  PEL+   +    +   Q    V+F L+ +    
Sbjct: 255 PLRPTDVNELSITQARRALQRLDPDREPELVRALKVHLAQSYAQPFLAVVFALLGVGFGL 314

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIF 350
             +   QR+      IS+++ FG +    ++   +       P+   +L      + +I 
Sbjct: 315 SPS---QRRGRQGFGISVAVVFGQYVLTFFL-GALGTTGTLSPLAAAWLPHSIGLVVAIA 370

Query: 351 LLMIKKK 357
           LL    +
Sbjct: 371 LLWRADR 377


>gi|113460662|ref|YP_718728.1| permease [Haemophilus somnus 129PT]
 gi|112822705|gb|ABI24794.1| conserved permease [Haemophilus somnus 129PT]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 134/358 (37%), Gaps = 24/358 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + RS +     ++ + +  Q+++ +   S      +++  +    +PT+  
Sbjct: 2   ILIRYLTKEVFRSQIAILSILLLLFFSQQLVRVLGSASVGKIPADLVFALLSLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+   L L++L +     +   + 
Sbjct: 62  LIFPLCLFIAILLTFGRLYAESEITVMRACGVGQRILVGVALILSLLTAGLATYNVFYLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIV--DSR 179
           P       QL   A+   T   L    F  + + D+ + I++   NN +Q I++   +++
Sbjct: 122 PWAMQKQIQLIDDAKANPTMGALASGQFVNVGNTDVVLFINEI-KNNQIQDIYVFQMENK 180

Query: 180 DTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             Q   +  A++G +       Q + L + +    S +  D  I  F  Y    +   + 
Sbjct: 181 KNQKPSVTVAETGQLKVLPNGDQVLSLENSQRVEGSALLPDFRITHFDQYQAYLDYKTTD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +    +L  L+N    +P  +        +E H RLT      I  LI++     R
Sbjct: 241 KDTSETEILSLKELIN--SKSPAAK--------AELHWRLTLIFAVPIMALIAVP--LSR 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              RQ +     F  +  +  ++  +  +   ++       I       + SIF L +
Sbjct: 289 VNPRQGR-----FAKILPALLLYLIYFLLQSSLKSAGASGKIEAHIFMPLVSIFFLFL 341


>gi|16763279|ref|NP_458896.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144758|ref|NP_808100.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62182905|ref|YP_219322.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161617773|ref|YP_001591738.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551265|ref|ZP_02345020.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168232819|ref|ZP_02657877.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234609|ref|ZP_02659667.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244032|ref|ZP_02668964.1| putative permease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262478|ref|ZP_02684451.1| putative permease [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168821096|ref|ZP_02833096.1| putative permease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445077|ref|YP_002043718.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450320|ref|YP_002048502.1| permease [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194468992|ref|ZP_03074976.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736994|ref|YP_002117399.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197250300|ref|YP_002149398.1| putative permease [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197262941|ref|ZP_03163015.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|198242439|ref|YP_002218342.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200386849|ref|ZP_03213461.1| putative permease [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204927295|ref|ZP_03218497.1| putative permease [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205355210|ref|YP_002229011.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859604|ref|YP_002246255.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213022334|ref|ZP_03336781.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213427635|ref|ZP_03360385.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213618569|ref|ZP_03372395.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650368|ref|ZP_03380421.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|238910634|ref|ZP_04654471.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824526|ref|ZP_06544085.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25309681|pir||AF1061 probable inner membrane protein STY4817 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505587|emb|CAD06939.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140397|gb|AAO71960.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130538|gb|AAX68241.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161367137|gb|ABX70905.1| hypothetical protein SPAB_05636 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403740|gb|ACF63962.1| putative permease [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408624|gb|ACF68843.1| putative permease, YjgP/YjgQ family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455356|gb|EDX44195.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712496|gb|ACF91717.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197214003|gb|ACH51400.1| putative permease [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241196|gb|EDY23816.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197291917|gb|EDY31267.1| putative permease [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936955|gb|ACH74288.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603947|gb|EDZ02492.1| putative permease [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204323960|gb|EDZ09155.1| putative permease [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205274991|emb|CAR40065.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323849|gb|EDZ11688.1| putative permease [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205332944|gb|EDZ19708.1| putative permease [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337037|gb|EDZ23801.1| putative permease [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342368|gb|EDZ29132.1| putative permease [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348722|gb|EDZ35353.1| putative  permease [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206711407|emb|CAR35786.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320088910|emb|CBY98668.1| Lipopolysaccharide export system permease protein lptF [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|322615642|gb|EFY12562.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618702|gb|EFY15591.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621885|gb|EFY18735.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627610|gb|EFY24401.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630916|gb|EFY27680.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637865|gb|EFY34566.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642323|gb|EFY38929.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322643902|gb|EFY40450.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651022|gb|EFY47407.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656725|gb|EFY53013.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659851|gb|EFY56094.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661938|gb|EFY58154.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666314|gb|EFY62492.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672733|gb|EFY68844.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676163|gb|EFY72234.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680647|gb|EFY76685.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684459|gb|EFY80463.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322717408|gb|EFZ08979.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323194204|gb|EFZ79401.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197349|gb|EFZ82489.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201533|gb|EFZ86597.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206047|gb|EFZ91009.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213058|gb|EFZ97860.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215429|gb|EGA00173.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219413|gb|EGA03898.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227717|gb|EGA11871.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228887|gb|EGA13016.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236501|gb|EGA20577.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239998|gb|EGA24045.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323241955|gb|EGA25984.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247896|gb|EGA31833.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251466|gb|EGA35337.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258168|gb|EGA41845.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263686|gb|EGA47207.1| putative permease [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265718|gb|EGA49214.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270162|gb|EGA53610.1| lipopolysaccharide ABC transporter permease LptF [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326630368|gb|EGE36711.1| putative permease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 366

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 22/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   I+ N     +  +      ++  L +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 341


>gi|16767724|ref|NP_463339.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167991268|ref|ZP_02572367.1| putative permease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|16423044|gb|AAL23298.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205330408|gb|EDZ17172.1| putative permease [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249567|emb|CBG27434.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996823|gb|ACY91708.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160963|emb|CBW20497.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915575|dbj|BAJ39549.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323132816|gb|ADX20246.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332991288|gb|AEF10271.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 366

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 22/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   I+ N     +  +      ++  L +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 341


>gi|238755186|ref|ZP_04616532.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
 gi|238706633|gb|EEP99004.1| Inner membrane protein yjgP [Yersinia ruckeri ATCC 29473]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 134/367 (36%), Gaps = 25/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRVLGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  LI   L L++L S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTYGKLYTESEITVMHACGLGKRPLIIAALILSMLTSGLAAVNAIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR--D 180
           P       ++   A+   + + L E  F    D   +           Q +F+   R  D
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALVEGQFQSSQDGNAVLFVGSVSGKEFQRVFLAQLRPSD 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A  G +       Q ++LN G  +  + + +D  I  F  Y        +  
Sbjct: 182 NQRPSVVVADKGHMAERPDGSQVVLLNQGTRYEGTALLRDFRITDFTDYQAVIGHQVAQQ 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +++ L + +  +           R+EFH RLT  +  VI  ++ +       
Sbjct: 242 DNNIVEQMSMAALWHSSEQDA----------RAEFHWRLTLIVSVVIMAMLVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  N       P++++++   + + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNGAKGKLDPMVWIWVVNGAYLALALV 344

Query: 355 KKKYTKI 361
              +  +
Sbjct: 345 LNLWDSL 351


>gi|255009764|ref|ZP_05281890.1| putative permease [Bacteroides fragilis 3_1_12]
 gi|313147551|ref|ZP_07809744.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136318|gb|EFR53678.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 634

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 105/266 (39%), Gaps = 22/266 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      +++L +   Y   ++
Sbjct: 4   IKRLDIFIIKSFLLLFVGTFFICLFIFMMQFLWKYVDELVGKGLEMSVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     +     ELL +   G S + +++P++ L   +    F  +N+
Sbjct: 64  VPMSLPLAVLLASLITFGNFGERFELLAMKAAGISLLKIMRPLIVLVFAICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   D   +K+ + +     L  + I D  
Sbjct: 124 IGPRAQAKLGTLLISMKQKSPEVDIPEGVFYDEIDGYNLKVQRKDRKTGMLYDVIIYDFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
           +     +I  A SG +++        + L  GE+               +R+    +  +
Sbjct: 184 NNFDNARIIVADSGRLEMTADKQHLYLHLYSGEMFENLKAQSMSSKNVPYRRESFREKHT 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQ 245
           I++F S       A+  +      D 
Sbjct: 244 IIQFDS-DFNMADASIMSNQSTTKDM 268


>gi|313672806|ref|YP_004050917.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939562|gb|ADR18754.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 345

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 138/354 (38%), Gaps = 20/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  I   F++S +F +FI    +++   +LV S      I+++   + +P+ 
Sbjct: 1   MNKLSKYILEEIYPIFIISNIFFIFILLFDKVVDLTDLVFSKNVPTIIIIETFIFYLPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        ++ + EL+++ + G S ++L+KP ++  IL ++  F++   
Sbjct: 61  MMVTIPTSALLAVMTAHNRLSSDAELVVMKSLGLSPMSLLKPTIYFGILATLLAFLTSFY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P           +    ++   ++EN F++    + I + K   +N    I ++D   
Sbjct: 121 LLPYGNKYAIYNLKRTVEYVSLKDIKENEFYKEIPSIAIYVKKKVDDNKFLQITLIDE-- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   +  A          A++  L +G +      +     ++FK +       ++   
Sbjct: 179 -KGGSLITAAEADAYQKFGAVVFDLKNGAI--IQGKNDRYGKIEFKKFYFVVNVDSNLNR 235

Query: 239 VLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +K+     +  L+         R      Y+ EF KR+      +I  L+ +   +   
Sbjct: 236 EIKSERFMFMDELI--------SRFNDGYIYKFEFSKRVALPFSTLIMALLGL---NMGV 284

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIF 350
              +  +     I+L I F          +   + NPY+ P +   +F   S+ 
Sbjct: 285 FFHRANRSINWIIALGIIFSYNVIMFMSENLAGKINPYFAPWIANTIFAFLSLI 338


>gi|195940457|ref|ZP_03085839.1| permease YjgP/YjgQ family protein [Escherichia coli O157:H7 str.
           EC4024]
          Length = 366

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 133/359 (37%), Gaps = 27/359 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PTSSRHQDEVLAEAKANPGLAALAQGQFQQATDGNSVLFIESVDGNRFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGQLAQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++  L+N +           +  R+E H R+T      +  L+ +       
Sbjct: 242 DPTDTEQMDMRTLMNTD----------TDRARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
             RQ +      +S+  +  ++  F  +   I+ N       P+++   + ++ ++LL+
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPMIW--TWVVNGLYLLL 341


>gi|104783411|ref|YP_609909.1| hypothetical protein PSEEN4442 [Pseudomonas entomophila L48]
 gi|95112398|emb|CAK17125.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 371

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 135/360 (37%), Gaps = 29/360 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFMIMGFRLPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   L  A L+++ +      + P  
Sbjct: 65  PLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLAMTLAPAALVALLVAWLSLSLAPLG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR---- 179
            + ++++ A+      F  L    F  L D        + + +   L G+FI + R    
Sbjct: 125 VAQVQKIIAQQDALTEFDTLVPGRFQTLRDGSRVTYTEQLSDDRINLAGVFISEKRFNQD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+ G   +  D    ++L +G  +  +P   D   +K+ +Y +      
Sbjct: 185 KTKDRAPSVLVAEKGHQEVQADGNRYLVLQNGYRYDGNPGQADYRAIKYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  V +      S L      NP  R       R+E   RL+  L   +  L+++    
Sbjct: 245 VAEEVTEREAIPTSDLFG----NPGVRE------RAELQWRLSLPLLVFVVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLM 353
            R   RQ +     F+ L  +  ++  +  ++  +        + + L ++ +  +FLL+
Sbjct: 293 SRVNPRQGR-----FLKLLPAILLYMAYLTMLISVRGALEKGKLPISLGIWWVHGLFLLI 347


>gi|311281181|ref|YP_003943412.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
 gi|308750376|gb|ADO50128.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
          Length = 366

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 130/357 (36%), Gaps = 25/357 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILALFTGIVAALNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +       + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNSVLFIESVDGKKFRDVFLAQIRTKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG+I       Q + LN+G     + + +D  +  FK+Y         S 
Sbjct: 182 NARPSVVVADSGNITQQKDGSQVVHLNEGTRFEGTAMLRDFRVTDFKNYQAIIGHQTVSL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N+  L N + N            R+E H RLT      I  L+ +       
Sbjct: 242 DPSDTEQMNMLTLWNTDTN----------GARAELHWRLTLVATVFIMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFL 351
             RQ +      +S+  +  ++  F  +   I  N       P++++++  +    L
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIRSNGEKGKLDPMVWMWVVNLLYFAL 341


>gi|253572213|ref|ZP_04849617.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387973|ref|ZP_06997521.1| permease [Bacteroides sp. 1_1_14]
 gi|251838393|gb|EES66480.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259239|gb|EFI02115.1| permease [Bacteroides sp. 1_1_14]
          Length = 632

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 109/268 (40%), Gaps = 22/268 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 64  VPISLPLAILLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +KI+K N     +  + I + +
Sbjct: 124 VGPIAQTKLYTLIISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLK 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEV---------------HRKSPISKDIS 219
           D  +   I YA SG +++        + L  G++               +R+    +  +
Sbjct: 184 DGFENAHIIYADSGRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHT 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNL 247
           I++F S       A+  +    A D ++
Sbjct: 244 IIEFDS-DFNMADASIMSNTSAAKDMSM 270


>gi|333029769|ref|ZP_08457830.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
 gi|332740366|gb|EGJ70848.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
          Length = 632

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + ++L+  G  F+ +    +FI  +  + + ++ +      + +L +   Y   T+
Sbjct: 4   LKKLDKFVLKSFGLLFIATFFICLFIFMMQFLWRYVDDLVGKGLEMTVLGQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     +     ELL +   G S   +I+P++ LA+LL    F+ +N 
Sbjct: 64  IPASLPLATLLASLITFGNFGERFELLAMKAAGISLFKIIRPLMILAVLLCGISFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK  S +  L    +       + E +F+   D   I + + +     L  + I +  
Sbjct: 124 IGPKAFSKLTTLLISIRQKSPELDIPEGIFYDEIDGYNIFVKEKDRKTGLLYDVIIYEFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISK 216
           +     +I  A +G + +        + L  GE+      + 
Sbjct: 184 EGFDNARIIVADTGQLAMTADKQYLYLHLYSGEMFENIRQTG 225


>gi|196228894|ref|ZP_03127760.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
 gi|196227175|gb|EDY21679.1| permease YjgP/YjgQ family protein [Chthoniobacter flavus Ellin428]
          Length = 376

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 138/378 (36%), Gaps = 28/378 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPT 59
           MK  + Y+   +  +F ++   +  +  +  I  Q ++L+  +   L +++    Y++P 
Sbjct: 1   MKLIDRYVGGQLLVTFSLAVSVLSVVLVLGNIFKQLLDLLVKNDTPLEVVVSFLSYILPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P+ F      V   ++   EL+    +G S   L   V  LA       F    
Sbjct: 61  SLSFTIPWAFLTAVLLVFGRLSAEHELVAFRASGVSIPRLCYTVFLLAAACVATCFWINI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P+ +  +K+      +    +    +L      +  I + + +    L  + + +S 
Sbjct: 121 DVAPRAQGKMKEALYNVAVTNPLAMFGADLVIDSFPNKKIYL-ESSNGPELHNLLVYESN 179

Query: 180 DTQTHK-IYYAQSGSIDLD--RQAIILN----------DGEVHRKSPISKDISIMKFKSY 226
           D      + +A+ G I+ D  ++ ++L+          D +V     I + I++ +  + 
Sbjct: 180 DDNLLLKVIFARRGLIETDGEKKQLLLHIYDATYEARDDDDVENLLKIKQGITMRE-ATL 238

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPN------NPNYRPELLETYRSEFHKRLTQWL 280
            +  E  +               LL+              R E      +E +KR +  L
Sbjct: 239 PISLEELHKKYHKGGLPSMTTGALLDHLSEKTESTMTEKERIEQHSATITEINKRYSFSL 298

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--I 338
             + F L+ +  A       +++      ISL ++  V++ F  I + + + P + P  +
Sbjct: 299 AAICFALVGVPLAI---TAHRKETSIGFLISLCVAL-VYYFFIIIANTVREKPQWHPAEL 354

Query: 339 LYLFLFCISSIFLLMIKK 356
           +++           +  +
Sbjct: 355 VWVPNILCVVFGGWLFYR 372


>gi|253583478|ref|ZP_04860676.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834050|gb|EES62613.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 362

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 135/366 (36%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI +   +SF +S +  V I  V Q+ + I  VS    S +  +     +IP +
Sbjct: 3   IKIIDRYISKNFIKSFFLSLIAFVGIFLVSQLFKVIRYVSDGRFSADESIVYILTMIPKI 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + +   ++SM  N E++ +   G S   ++   +F++ +++I +F+  + 
Sbjct: 63  LIDVAPLAVLLGSLMTVSSMASNLEVISLKTAGISFKRIVLFPIFISAVIAIIVFLINDS 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTL-QGIFIVDS 178
           + P      +++             + N F R ++  Y+  + K N      + I IVD 
Sbjct: 123 LYPYSVRKNREIKDGGNTRREMPVEKRNAFLRGENSNYVYLMGKINRETGFGENIEIVDL 182

Query: 179 RD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +   +  +I  A+ G  +  ++  +L D  ++    + K   +  F       E     
Sbjct: 183 NEEFNKVERIITAKEGRYNFTKKVWVLKDANIYNGKELKKAEEVKLFTEDKYDDEPDKFI 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T  ++     +  L   +                E   R +      I   + +      
Sbjct: 243 TKSVEPKTLTIKEL-KKSVREIKSIGGDTRELLVEIGNRYSFPFSSFIISFLGLSLG--- 298

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
              R  +    I ++LS++ G  ++        +  N +  P +  +   +  +      
Sbjct: 299 --SRYVRGASAISMALSVALGYGYYIVQASFEALSINGFLNPFISGWIPNIIFLGIGIYF 356

Query: 353 MIKKKY 358
           M + +Y
Sbjct: 357 MYRAEY 362


>gi|300690719|ref|YP_003751714.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
 gi|299077779|emb|CBJ50417.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum PSI07]
          Length = 372

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 126/361 (34%), Gaps = 20/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGISLTDFIRPVLRFSLPFVVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAAQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +   +  A++G           ++L+ G  +  +P   D  I++F  Y ++  S    +
Sbjct: 182 DKIG-VALAKTGEFKTSPNGDRYVLLDKGRRYEGTPGQLDYRIVEFDRYGVKVASKPPQA 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-D 294
              L    +  + LL NP P N             E   R+   L  + F LI+I  A  
Sbjct: 241 DANLPTKSRPTTELLANPTPENMG-----------ELVWRIGLPLLALNFVLIAIPLAYV 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              L R    I  + I L+ S  +    +++             ++L  F  + +     
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMNAMLAWWPIHLAAFVCAMLLFRFR 349

Query: 355 K 355
            
Sbjct: 350 H 350


>gi|121605070|ref|YP_982399.1| permease [Polaromonas naphthalenivorans CJ2]
 gi|120594039|gb|ABM37478.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 373

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 123/337 (36%), Gaps = 25/337 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + R+F  + + ++ I   I +++ +   S  + S   ++    Y     LP
Sbjct: 2   LFQSSIRKELARAFGATLVVLITIVMTIVLIRTLGQASRGSISPQDVMLYMAYSGLGRLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +   + LT M R++E+++   +G      ++P+   A  + + + +    + 
Sbjct: 62  TILTISLFIAMVSTLTRMYRDSEMVVWFTSGQGLAGFLRPLFHFAWPVLLVITLMALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL--QGIFIVDSRD 180
           P      K + ++ Q       +   +F        +     +         +FI  + +
Sbjct: 122 PWTNQQTKDMQSRYQQRGDLDRITPGVFQESSSGNRVFFIDRDLAGEKASTNVFIA-ATE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                I  AQSG I+   D + ++L++G+          + I  FK Y ++T +S     
Sbjct: 181 KGKSSITTAQSGRIESRGDARFLMLSNGQRLENDLEKSALKISDFKEYGVKTNDSGLLGE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   +   L+           +   +   E   RL   L    F  +++  A  + 
Sbjct: 241 SAPEAKLLSTRALI----------KDPTRSNLGELAWRLGLALSAFNFVFLAVALA--KV 288

Query: 298 LVRQRKKIHPIFISLSIS-------FGVFWGFSYIIH 327
             R  +  + +F+ L+          G  W F  +I 
Sbjct: 289 NPRGGRSGNMMFVVLAFVVYNNLVNLGQSWIFVGLIS 325


>gi|153808346|ref|ZP_01961014.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
 gi|149129249|gb|EDM20465.1| hypothetical protein BACCAC_02640 [Bacteroides caccae ATCC 43185]
          Length = 638

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 107/266 (40%), Gaps = 22/266 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 10  IKKLDIFIVKSFMMLFVGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P++F    L    F  +N+
Sbjct: 70  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGISFYFQNV 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +KI+K N     L  + I D +
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMLYDVLIYDLK 189

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEV---------------HRKSPISKDIS 219
           +  +  ++ YA SG +++        + L  G++               +R+    +  +
Sbjct: 190 EGFEKARVIYADSGRLEMTADKQHLWLHLYSGDLFENLKAQSMKSQNVPYRRESFREKHT 249

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQ 245
           I++F S        +       A D 
Sbjct: 250 IIEFDS-DFNMVDGDIMGRQSSAKDM 274


>gi|118594056|ref|ZP_01551403.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
 gi|118439834|gb|EAV46461.1| permease YjgP/YjgQ [Methylophilales bacterium HTCC2181]
          Length = 372

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 133/366 (36%), Gaps = 20/366 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  + L + L +  I    + +      +  +   + +  +  + +   +P
Sbjct: 2   LFKKSLTRELFFTSLSTILVLSGIVVAQRAVIVFRFAARGSIPNDAIDTVLVFNLLKHMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+   +++E++I  ++G    +LIKP++     + I +      I 
Sbjct: 62  LLLSLTVFITILITLSRWYKDSEMIIWFSSGLGLYSLIKPIILFCFPIIILIASLSLYIS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNP-NNTLQGIFIVDSRD 180
           P      ++     +     + +    F     ++    I  ++   + ++ IFI   ++
Sbjct: 122 PWAVQKAEEYKTGLKSRDEIATITPGTFKESKSNNRIFYIEGFSSLGSKVKNIFIQSMQN 181

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I   +   I  + +   I+L +G  +     SK+ S   F  Y +  E    + +
Sbjct: 182 GKLGVIVSNEGERIEDNNNNNYIVLKNGRRYEGIANSKEFSTTTFDEYGILMEKTPKNNL 241

Query: 239 VLKAN------DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            + A          L+ + N N +N        + + +E   R++  L  +    ++I  
Sbjct: 242 NVGAKAGIIEATPTLALIFNQNDSN-------RKQFLAELMWRISLPLSTIFLIFLAIP- 293

Query: 293 ADKRALVRQRKKIHPIFISLS-ISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  R  +  + I      + +  F G    +  + + P ++  L + L      F 
Sbjct: 294 -LSFINNRTGRSFNMIVAVFIFVIYNNFLGIFQSLISVGKIPLWLGFLPVHLVFGLVAFY 352

Query: 352 LMIKKK 357
           L+ ++ 
Sbjct: 353 LLHRRS 358


>gi|313203466|ref|YP_004042123.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
           WB4]
 gi|312442782|gb|ADQ79138.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
           WB4]
          Length = 493

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 6/212 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI +     FLM+ L  +FI  +  + + ++ +       ++L +   Y I +V
Sbjct: 4   IKKIDSYIFKRFITQFLMTFLICIFILLMQFLWKHVSELIGKGVGWSVLAEFFIYAIFSV 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++  N EL  +   G S   +I+P++     + +  F   N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGENFELTAMKAAGISLFRIIRPLIIFISFVCVGAFFFSNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++ +  L    +       +    F+    ++ I +     ++ L+ + I +   
Sbjct: 124 VLPVAQTKLYTLVISLKQKSPELDIPTGEFYSGIPNVQIYVKDK-KDHILKNVMIYNFSG 182

Query: 181 T-QTHKIYYAQSGSIDLDRQA----IILNDGE 207
             +  ++  A SG +          + L DGE
Sbjct: 183 GFENAEVTVADSGKVQFTEDKKYIMLSLFDGE 214



 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           +S  +  N      +   +  +  E H++ T     +IF  I    A   A++R+     
Sbjct: 348 MSETVEYNKTMIGSQVTYITKHEIERHRKFTLSFACLIFFFIG---APLGAIIRKGGLGM 404

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKK 356
           P+ IS+ +    +   +     +++  +     ++L  F +  I + +  K
Sbjct: 405 PVVISVIMFIIYYIIDNTGYKMVKEGLWLSYQGMWLSSFVLLPIGIFLTYK 455


>gi|56416250|ref|YP_153325.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365173|ref|YP_002144810.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130507|gb|AAV80013.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096650|emb|CAR62265.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 366

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 22/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKATPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   I+ N     +  +      ++  L +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 341


>gi|317494176|ref|ZP_07952592.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917949|gb|EFV39292.1| inner membrane protein yjgP [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 130/349 (37%), Gaps = 25/349 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQIAILFILLLIFFCQKMVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E++++   G  +  LIK  + LA +   F  ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEIVVMHACGLGKGVLIKTAMILAFITGAFALVNAFWVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + + E  F    D  Y+           + +F+   R   
Sbjct: 122 PWSSFHSDEVMAEAKANPGLASMVEGQFQPSKDGNYVLFVGDVKGKKFENVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           T    +  A +G ++      Q ++L+ G  +  + + +D  I  F +Y           
Sbjct: 182 TQRPSVVVADTGHMEGRPDGSQQVVLDTGTRYEGTALLRDFRITDFVNYEAVIGHQAVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
               A+   +  L + N  +          +R+EFH R+T      +  L+ +       
Sbjct: 242 NPSNADQAPMQALWDSNEKD----------FRAEFHWRITLVFSVFVMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL 343
             RQ +      +S+  +  ++  F  +   +  N       P +++++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNAAKGKIDPFIWVWV 333


>gi|294055919|ref|YP_003549577.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293615252|gb|ADE55407.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 382

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 137/380 (36%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPT 59
           +     ++ + I  + L++    +F+      ++ +  + ++        +K+ G LIP 
Sbjct: 2   LNLLHRHVFKEIAVAILLAMGLFIFVLLTGNAIRDVAALVAAGKLDAMTFIKLMGLLIPY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V     P      T   L  ++   E+  + + G S   +  PV F+A +  +   +   
Sbjct: 62  VAAYALPLGILTGTLMALGRLSSQREITAMKSAGLSLYQIASPVFFIAFIAMVLSLVVNL 121

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P+ +S  K++ A         ++EE  F        I +  ++    ++  ++ +  
Sbjct: 122 DFAPRAKSAFKEMLASTISENPVKFIEEKKFITGFPGYVIYMGDHD-GGLMKDFWVWELD 180

Query: 180 D-TQTHKIYYAQSGSIDLDRQA--IILN--DGEVHRKSPI------SKDISIMKFKSYTL 228
           D  Q  +   A+SG +D DR+A  ++L   +     +          +D+  + F+    
Sbjct: 181 DRKQVTRFVRAESGELDYDREANELVLRVYNATAELRDDDAPETLLGEDLQTIFFQETEF 240

Query: 229 QTES----ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL---- 280
                       T  +K  + N + L+           +  E   S   +R+   +    
Sbjct: 241 ALPLERLFGQQKTRHVKIKNMNFAQLMEVREAALQAEAQSEEPGIS--KQRMQAQVQIQK 298

Query: 281 -FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYI 336
              + F   S+        ++  +K     +++++   + + F  I+    ++       
Sbjct: 299 NCAMAFSTFSLALFGVPLAIQVGRKESYANLAIALIIAMTYYFLMIVVSWMEDRIELRPD 358

Query: 337 PILYLFLFCISSIFLLMIKK 356
            +++L       I L +I++
Sbjct: 359 LLIWLPNILFQGIGLYLIRR 378


>gi|159030859|emb|CAO88538.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 387

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 116/361 (32%), Gaps = 27/361 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + Y++  +   FL S      +   +  +    N V  +   L   L+I    +P  +
Sbjct: 16  LIDRYLISQLLPPFLFSVGLFASLGVAISNLSDLANQVVDANLPLASALEILLLKVPEFV 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T      ++ ++E + + + G +   L  P   L++++++  F+    +
Sbjct: 76  TYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNEYV 135

Query: 122 EPKCRSTIKQLSAK--------------AQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
            P       ++  +                       LE     R    L     +++  
Sbjct: 136 VPNANYRATEILVQKINKEANFWKNKDFYYPDYEIKTLENGTINRNLRSL-FYAEQFD-G 193

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM---KFK 224
             ++ + ++     + ++I  A S   +         +G ++  +P +   S +   K +
Sbjct: 194 EKMKTVTVIRWLKEELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYSQVIPFKTE 253

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPV 283
              L   + + +       + N+   +            + +  ++    +++      +
Sbjct: 254 KIALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDEKRVRFFQVRIQQKIAFPFVCI 313

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLF 342
           +F  I              +        LS++   +++  ++++  +       P L  +
Sbjct: 314 VFATIGCALGSLPQ-----RISRGTSFGLSVAIVFLYYLLNFLVGSLGLTATLSPFLAAW 368

Query: 343 L 343
           L
Sbjct: 369 L 369


>gi|121730353|ref|ZP_01682711.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
           [Vibrio cholerae V52]
 gi|121627894|gb|EAX60475.1| bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)
           [Vibrio cholerae V52]
          Length = 233

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 5/230 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +  VS      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           +    + ++ SG    +   RQ I L DG  +   P   D  I  F SY 
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYD 231


>gi|283786943|ref|YP_003366808.1| permease [Citrobacter rodentium ICC168]
 gi|282950397|emb|CBG90045.1| putative permease [Citrobacter rodentium ICC168]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  LIK  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPGMAALAQGQFQQASNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   +           +  R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWTTD----------TDRARAELHWRITLIFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P+++++L  +  + L + 
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLMFFLIQTSLKSNGGKGKLDPVIWMWLVNLLYLALAIG 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|313895766|ref|ZP_07829321.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975595|gb|EFR41055.1| permease, YjgP/YjgQ family [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 133/375 (35%), Gaps = 30/375 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P 
Sbjct: 5   IRILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPG 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +      ++  +E+  + + G +   +  P + L  ++S+   +   
Sbjct: 65  VVMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNE 124

Query: 120 IIEPKCRSTIKQLSA---------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NT 169
            + P+  +  + +           K+Q  +    + +    RL     +    Y+     
Sbjct: 125 YVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRL-----VYARAYDAEQQR 179

Query: 170 LQGIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           L  + +     D +   +  A+    +   +  I++ G+V+  +    +   M+F++  L
Sbjct: 180 LTNVSLQVFGDDGKVSHVENAE--YAEWTGKEWIMHSGDVYDIADEHME-RHMRFETQVL 236

Query: 229 QTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      I  +    +  +  L          +        +E ++R++  +  +IF 
Sbjct: 237 PVQKDPRQIIREQKSPEEMTMRELRRQ-IALMQTQYVNTNKLEAELYQRVSVPMASLIFT 295

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---L 343
           LI +    +    R           + I F  ++    + +   +     P+L ++   +
Sbjct: 296 LIGVPLGIQP--TRNSSSAGFAMSVIIIFF--YYALMTMGNAFARGGVLPPMLAVWIPNI 351

Query: 344 FCISSIFLLMIKKKY 358
             I +  +L  +  +
Sbjct: 352 VGIIAGAILFRRASH 366


>gi|320530395|ref|ZP_08031454.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
 gi|320137359|gb|EFW29282.1| hypothetical protein HMPREF9555_01558 [Selenomonas artemidis F0399]
          Length = 369

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/375 (12%), Positives = 133/375 (35%), Gaps = 30/375 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           ++  + YI R +  SFL +      +      + +    ++    SL  ++KI  + +P 
Sbjct: 8   IRILDKYIFREVFVSFLFAICAFSAVFIGSGTLFRIAQYITDYGASLPSVIKIFVFSLPG 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P    + +      ++  +E+  + + G +   +  P + L  ++S+   +   
Sbjct: 68  VVMWTFPMSMLLASLLTFGKLSSASEITAMKSCGINFTRIAAPAVLLGFVVSVGAILFNE 127

Query: 120 IIEPKCRSTIKQLSA---------KAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NT 169
            + P+  +  + +           K+Q  +    + +    RL     +    Y+     
Sbjct: 128 YVVPRANTAYRNVIYYEIEGNSGMKSQEHVIIKEITDGQIRRL-----VYARAYDAEQQR 182

Query: 170 LQGIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           L  + +     D +   +  A+    +   +  I++ G+V+  +    +   M+F++  L
Sbjct: 183 LTNVSLQVFGDDGKVSHVENAE--YAEWTGKEWIMHSGDVYDIADEHME-RHMRFETQVL 239

Query: 229 QTESANSSTIVLK--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      I  +    +  +  L          +        +E ++R++  +  +IF 
Sbjct: 240 PVQKDPRQIIREQKSPEEMTMRELRRQ-IALMQTQYVNTNKLEAELYQRVSVPMASLIFT 298

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---L 343
           LI +    +    R           + I F  ++    + +   +     P+L ++   +
Sbjct: 299 LIGVPLGIQP--TRNSSSAGFAMSVIIIFF--YYALMTMGNAFARGGVLPPMLAVWIPNI 354

Query: 344 FCISSIFLLMIKKKY 358
             I +  +L  +  +
Sbjct: 355 VGIIAGAILFRRASH 369


>gi|85709344|ref|ZP_01040409.1| predicted permease [Erythrobacter sp. NAP1]
 gi|85688054|gb|EAQ28058.1| predicted permease [Erythrobacter sp. NAP1]
          Length = 417

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 128/363 (35%), Gaps = 13/363 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           S + YI R +    L        +  + ++L+  + V+     + ++ K+ G LIP    
Sbjct: 7   SIDRYIFRLVIVPMLGVFALAASLLLLDKMLRLFDFVAVEGGPIGVVFKMLGALIPEYAS 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +        +  ++EL  +   G S   L++    + ++L          I+
Sbjct: 67  LAIPLGLLLGVLLAFRKLATSSELDTMRAVGLSYWRLLRVPYAITLVLVAVNIALVFYIQ 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDT 181
           P  R   +Q+  + +     + ++   F  L D + ++I +   +   L GIF   S   
Sbjct: 127 PVSRYYYEQMEYELRSGALGASIKVGEFTTLADRMALRIERSEDDGQRLIGIFARVSNSR 186

Query: 182 QTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  A+ GS      D D   + L +G + +    S+   ++ F  + L  +     
Sbjct: 187 DQVLSISAREGSFMATTDDPDTIILRLTEGTIVQ-DTGSETPRVLSFSRHDLPIDLPAVE 245

Query: 237 TIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +   + +  L  LL    +      E  +  ++ F+ R  + +  ++  L+++  A
Sbjct: 246 EFRARGEASREYILPELLRIGWSEQAEEDE-RDAVQAAFNYRTVEVVMMLLMPLLAVALA 304

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                      +    I +     +      I      +P  I  L+      +++ + M
Sbjct: 305 IPPKRSTSALGVFVSIILVVAYHKINQYGEDIAALGRIDP--IIALWGPFCAFAALIIWM 362

Query: 354 IKK 356
             +
Sbjct: 363 YYR 365


>gi|254491489|ref|ZP_05104668.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
           DMS010]
 gi|224462967|gb|EEF79237.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
           DMS010]
          Length = 344

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 109/294 (37%), Gaps = 19/294 (6%)

Query: 25  FIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNT 84
            I    +  + +   +      +++  + G      L ++ P    +     L  M+ + 
Sbjct: 3   LIYISTRFARYLADAAVGNMPADVIFSLLGLSSLGALSILLPIGAFLAVMLTLGRMSSDN 62

Query: 85  ELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSY 144
           EL ++   G S   +++ V+  +  +++ + +    + P   S   +L  +A+++   + 
Sbjct: 63  ELTVMAACGISTSRVMRNVMLFSGTIALMVAVLSLFVVPDVMSDRYELQTRAKMSANTTG 122

Query: 145 LEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLD----R 198
           L    F    D          + N   ++ +FI +        I+ +++G  ++D     
Sbjct: 123 LIAGSFKESGDGDWTFYSEGLSANKQFMENVFI-EIEGKDKPLIFRSETGHFEIDAVTGN 181

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
           + ++L  G  +  +   +D +I +F S++L  E  ++  +  +        LL       
Sbjct: 182 KFLVLEKGYRYEGNAGDQDFTIAQFASHSLLVEKGDAGEVRERHKAMPTGELL------- 234

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                      +E   R +  L  ++  L+++  A+     RQ +    +   L
Sbjct: 235 ---ERGSARDIAEVQWRTSAALMTLLLCLMAMPLANAGP--RQGRYAGFVPAVL 283


>gi|34763639|ref|ZP_00144568.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294785395|ref|ZP_06750683.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
 gi|27886692|gb|EAA23836.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|294487109|gb|EFG34471.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
          Length = 359

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 121/331 (36%), Gaps = 10/331 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K + AK         L+E  F    D+  I + K + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNIIAFEKPE 180

Query: 181 TQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +     +   +         AIIL + +        K   +  F    +   +   + +
Sbjct: 181 DKNKFPMVLTGEEAFWK--DSAIILKESQFVSFDETGKKNLVGTFDEKKVVLTAYFQDLN 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
             +      +++ L+             +  Y+ E  ++L      +   +I   ++   
Sbjct: 239 IKIKDVEALSITDLI---KGIKKVEATEVIKYKIEIFRKLALVFSTIPLAVIGFCLSLGH 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYII 326
             + ++   I  + I  +    +  G     
Sbjct: 296 HRISKKYSFILAMIIVFAYIIFLNIGIVMAT 326


>gi|254303140|ref|ZP_04970498.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323332|gb|EDK88582.1| possible ABC superfamily ATP binding cassette transporter membrane
           protein [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 359

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 122/344 (35%), Gaps = 9/344 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--S 178
           I P+    +K + AK         L+E  F    D+  I + + + +   + I   +   
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDEVDSDGKAKNIIAFEKPE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++   +   +      +  +IIL + +        K   +  F    +   +     +
Sbjct: 181 DKSKFPMVLTGEEAFWKDN--SIILKESQFVSFDETGKKNLVGTFDEKRVVLTAY-FQDL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +K  D     +++               Y+ E  ++L      V   +I        +L
Sbjct: 238 NIKIKDVEALSIIDLIKGLKKVEATEAIRYKIEIFRKLALVFSTVPLAVIGFCL----SL 293

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
              R      FI   I    +  F  I   +       P +  +
Sbjct: 294 GHHRISKKYSFILAMIIIFAYIIFLNIGIVMATAGKLNPFIATW 337


>gi|54295469|ref|YP_127884.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
 gi|53755301|emb|CAH16795.1| hypothetical protein lpl2555 [Legionella pneumophila str. Lens]
          Length = 359

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 136/373 (36%), Gaps = 30/373 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVD--- 177
           P       +L     +      +    F  ++       +   N +++  + IF+     
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +     + +A     +++ Q     I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     A  ++L  L N +               +E   R++  L  +   L+++ 
Sbjct: 242 TVVMHDDARTAKTRDLWPLNNHDLKK-----------AAELQWRISIPLMVLTLTLVAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISS 348
               R   R  K    +   +   F  +  F ++        + P++I + ++ +  ++ 
Sbjct: 291 --LSRVSPRSGKYSKLLPAIIIYIF--YANFMFVSRDAIATGKIPWWIGMWWVHV-AVAI 345

Query: 349 IFLLMIKKKYTKI 361
           + +L I +   K+
Sbjct: 346 LGILFIWRNQVKL 358


>gi|52425604|ref|YP_088741.1| hypothetical protein MS1549 [Mannheimia succiniciproducens MBEL55E]
 gi|52307656|gb|AAU38156.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 366

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 129/357 (36%), Gaps = 24/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + +S +     ++ I +  Q+++ +   ++     +++L + G  +P +  
Sbjct: 2   ILTRYLTKEVFKSQVAILFILLLIFFSQQLVRVLGSAANGNVPADLVLSLLGLGMPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P C  +        +   +E+ ++   G  +  L+K  L L++L +     +   + 
Sbjct: 62  LMLPLCLFIAILLTFGRLYAESEISVMRACGVGQRILVKVALGLSVLTAALAAYNVLWVS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P       Q+   A+     S L    F   +D D  + I     +N +  I++  +++ 
Sbjct: 122 PWAIQKQGQIVEDARANPNMSALSAGQFMTSNDSDFVLFIDNI-KDNKISNIYLFQTKEK 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A++G +       Q + L + +    S    D  I  F  Y       N  
Sbjct: 181 GNSKPSVIVAENGELQSLPNGDQILSLQNSQRVEGSAALPDFRITNFTEYQAYLGHRN-- 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              + +++   + L                  ++E + R++  L      L++++A    
Sbjct: 239 ---VDSDENETTELPL-----AELLALKTPAAKAELNWRISLIL---AVPLMALLAVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE----QNPYYIPILYLFLFCISSI 349
            +  ++ +   I  +L +    F   S +              +P++ LF   +  +
Sbjct: 288 KVNPRQGRFAKILPALLLYLIYFLLQSSLKSAGGAGKLDAGLLMPLVNLFFLLLGIM 344


>gi|332290237|ref|YP_004421089.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
 gi|330433133|gb|AEC18192.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
          Length = 363

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 137/368 (37%), Gaps = 21/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++   +S L     ++ I    Q+++ +    +    ++++L + G  +PT+  
Sbjct: 2   ILTKYLIKETLKSQLAILFILLVIFLAQQLVRVLGSAVNGNVPVDVILPLLGLGMPTMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G     L+K  L L+I+ +     +   + 
Sbjct: 62  LMLPLSLFLALLLTLGRLYSESEITVMQACGIGPNALVKVGLILSIVTAAIAAYNSLYLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++   A+   + S +    F   ++  ++        + L  I++  +R   
Sbjct: 122 PWALKKQVEVVENAKANPSASAITPGQFISSNNGNFVLFVDKVKGDQLSDIYLFQTRQVG 181

Query: 183 --THKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G+    +   Q + L +GE    S +  +  +  F+ Y        +  
Sbjct: 182 KVKPSVIVAEQGNFSTAKDGSQTLALKNGERFEGSAVLPEFRVTHFQDYLAFLAFNPAKA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                + Q+ + LL  +  N           ++E   R++ +L   +  LI+I     + 
Sbjct: 242 EEADLDMQDSNALLKNSSANA----------KAELQWRISLFLAVPLMMLIAIP--LSKV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSY----IIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ +    I   L          S     I  KIE + + I +  LFL     +    
Sbjct: 290 NPRQGRFAKIIPALLLYLIYFLLQSSLKTAGINGKIESHYWMILVNMLFLLLGIILNSAT 349

Query: 354 IKKKYTKI 361
           I+ K+T++
Sbjct: 350 IQSKFTQL 357


>gi|254432417|ref|ZP_05046120.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
           7001]
 gi|197626870|gb|EDY39429.1| unclassified ABC-type transport system permease [Cyanobium sp. PCC
           7001]
          Length = 386

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 126/370 (34%), Gaps = 18/370 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    +        ++  +  + + +  V+ S   L++ L++    +P+ L
Sbjct: 14  LLDRWMLGELIGPLVFGVAAFTAVSLSVGAVFELVRRVAESGLPLDVALQVLLLELPSFL 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G     ++ P + LA+ +++  F     +
Sbjct: 74  VLSFPMATLMATLLTYSKLSGNSELTALRSVGVPTWRMLVPAVVLAVAMTMLTFGFNEAV 133

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLY------IKISKYNPNNT 169
            P   S  +   ++A          +N+         L D         I  ++      
Sbjct: 134 VPSTLSQAEATLSRAIGRAVAGEQRDNVVYSKYGRVELPDGSTERGLTHIFYAQRFNKGV 193

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTL 228
           ++ + ++D   +    +  A               DG+V    S  S+ I+  +F  Y  
Sbjct: 194 MEDVTLLDLSRSAHRVMLTADRARWSSRDAQWEFLDGQVVGIGSSGSEAITSARFDRYLY 253

Query: 229 QTESANS--STIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +     + +   AN+ ++            +         R    ++ +     ++F
Sbjct: 254 PLGNQPLKVAKLPKDANEMSIGQARTAERLLRESGDLRAARKLRVRIQEKFSFPAVCLVF 313

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI   +   R   R+ +        L I       FS+    ++     +   ++ +  
Sbjct: 314 GLIG-SSLGARPHSRRSRSQGFGLTVLLIFGYYLVAFSFSSLGVKGTLTPLLSAWMPVLI 372

Query: 346 ISSIFLLMIK 355
                L++++
Sbjct: 373 GLGTGLVLVR 382


>gi|158337167|ref|YP_001518342.1| YjgP/YjgQ family membrane protein [Acaryochloris marina MBIC11017]
 gi|158307408|gb|ABW29025.1| membrane protein, YjgP/YjgQ family, putative [Acaryochloris marina
           MBIC11017]
          Length = 383

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 130/358 (36%), Gaps = 13/358 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + +ILR     ++ +      I   +  +   +  ++  T S    L++    +P 
Sbjct: 17  ISRLDRFILRAFWMPWVFAFGAFTTISFSIGALFDTLRRLTEGTLSSVDALQVLVLQLPR 76

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + + R  EL+ +   GTS   +I+P L  ++++++       
Sbjct: 77  FMVLALPMSMLLAPLLTYSQLARKNELIALKACGTSVYRVIRPALCFSLIVAVSTLTLNE 136

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLY--IKISKYNPNNTLQGIFI 175
            I P   + + +L A+  ++   +   +N+  +      L        ++    L  + I
Sbjct: 137 WIVPPATAAVHRLQAQQTVSQITAIPRQNIVHQTYHHQRLTQLFHARAFD-GEALHQLTI 195

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTL-QTESA 233
           +  +D   H I+ A+    D   Q  IL+ G  +   P+S     ++ FK +   Q    
Sbjct: 196 LQFQDRHLHHIWLAKQAIWDSTHQQWILSQGTRYTIDPVSGLYQQVVPFKRHPFHQVSPQ 255

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             + +  +    + +  L          P L +  +  +H  +      V F L+   + 
Sbjct: 256 ELAEVAHQPISLHETQALIQQIKQSGNLPTL-QRLQVRWHALMAFPWIGVGFTLMG-SSL 313

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             ++  +Q      +   L      ++ FS+I   +     +   +  +L  +  + +
Sbjct: 314 GCQSTSKQGSLGFGLSSLLIFG---YYTFSFICQTLGDAGIWSASIAGWLPIVVLLTI 368


>gi|255034852|ref|YP_003085473.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
 gi|254947608|gb|ACT92308.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
          Length = 498

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 8/227 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  IL      F+++   +VF+  +  ++  I+   S   ++    ++  +     
Sbjct: 1   MKKLDKLILTSFWGPFVITMSVVVFVFLMRIMIFYIDDFVSKDLNVMDYAQLFFFFSLIT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++    EL  I + G S +  + P+  +A+ +S+F F   + 
Sbjct: 61  VPTALPLAMLLSSLMAFGNLGEFFELTAIKSAGISVVRAMAPLFIVAVGISVFSFYFNDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--- 177
           + P        L    +       ++E +F+       IK+ +   N  + G+ I     
Sbjct: 121 VSPWANLKGYSLLYDIKTTKATLKIKEGIFYNDLPGYSIKVDEKLENGKMTGMVIYKHNS 180

Query: 178 -SRDTQTHKIYYAQSGS---IDLDRQAII-LNDGEVHRKSPISKDIS 219
            S +    +I  A SG    I+ +R  +I L +G  +     S    
Sbjct: 181 RSYEFGNTEIILADSGRMYSINENRYLVIELYNGTRYTDEQGSASSR 227


>gi|158337152|ref|YP_001518327.1| permease YjgP/YjgQ [Acaryochloris marina MBIC11017]
 gi|158307393|gb|ABW29010.1| permease YjgP/YjgQ, putative [Acaryochloris marina MBIC11017]
          Length = 390

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 127/367 (34%), Gaps = 17/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+ R +   FL   +    I      +   +  VS +   + I L I    +P 
Sbjct: 13  LALVDRYLFRQLLPPFLWGMVAFSSIGVSAAVLFDLLGQVSEARLPIAIALSILTLQLPY 72

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +     L+ +  + ELL + + G     LI   L  ++L  +F+F    
Sbjct: 73  FVSLAIPMSVLLACLLTLSRLQSDGELLALQSAGLHLNRLIGSCLGFSLLACLFMFGLTE 132

Query: 120 IIEP----KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P         ++Q     Q +L   ++         +   +  ++     TL GI +
Sbjct: 133 SLVPVSQAHSHHLLRQTLQAGQFSLQGRHIVYPDIGPNQELRRLFYAQTGQGQTLSGITV 192

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-N 234
           +D       ++  AQS + + +R   I  DG ++       +  I++F    LQ     +
Sbjct: 193 IDWTLPNNQQVLIAQSATWNAERNIWIFKDGSIYAIGTDGAEKHIIEFSKQELQLPPQLS 252

Query: 235 SSTIVLKANDQNL---SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            +   +  N   L     LL         RP  +     + H+++      +IF    +V
Sbjct: 253 LTDSDINPNGVTLAQSQQLLTKLRQTG--RPTQIRALAIQIHRKIALPFTVIIF---GLV 307

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYI---IHKIEQNPYYIPILYLFLFCISS 348
            +      R+    +   ISL +  G +               +P++       +  +  
Sbjct: 308 GSTLGISQRRLAVSNGFGISLILVLGQYILIFIADAWGQLGIISPWFGAWTPNLVTGLIG 367

Query: 349 IFLLMIK 355
           + LL+  
Sbjct: 368 VSLLLRP 374


>gi|116074701|ref|ZP_01471962.1| possible permease [Synechococcus sp. RS9916]
 gi|116067923|gb|EAU73676.1| possible permease [Synechococcus sp. RS9916]
          Length = 389

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 133/377 (35%), Gaps = 24/377 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  +    + +      ++  V  + + +  +  S   + I L++    +P+ L
Sbjct: 18  LLDRWLISELVGPLIFAIAAFTVVSLSVGVMFELVRKIVESGLPVLIALQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+EL  + + G +   +I P L L+++++   F+  ++I
Sbjct: 78  VISFPMATLMATLLAYSRLSANSELTALRSVGVTARRMIAPALALSLVMTTLTFVFNDVI 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYNPN 167
            P+     +    +A      +   +++ +     L                   ++   
Sbjct: 138 VPRANRNAEVTLQRALGKAIATEKGDDIVYSRFGRLAGADEGDRTRGLAQLFYAREFRK- 196

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            T+QG+ ++D       ++  A     +         +G+    +P    I+  +F  Y 
Sbjct: 197 GTMQGVTLLDFSRVGFTQMLVADEAKWNDKEGKWEFLNGQSVTLTPEGGTIT-AQFDRYL 255

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNY---RPELLETYRSEFHKRLTQWLFPVI 284
               +A      L  +  N++ L               +     R    ++ T  +  ++
Sbjct: 256 YPLSAAPVRIAKLPKDANNMTVLEAVEAEQLLRDAGDRKEARRLRVRIQEKFTLPMACLV 315

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-L 343
           FGLI      K      R +   I + L +   V++  S+    +       P+L  +  
Sbjct: 316 FGLIGSSLGAKPNNRTSRSQGFGISVVLIL---VYYVLSFSFSSLGVKGTLPPLLAAWMP 372

Query: 344 FCISSIFLLMIKKKYTK 360
             IS      + ++ ++
Sbjct: 373 VLISLAGGWTLLRQASR 389


>gi|171913020|ref|ZP_02928490.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 385

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 136/388 (35%), Gaps = 36/388 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST--ESLNILLKISGYLIP 58
           ++ F+ YI R +  S L   L +  +  +  + + +  +   T    L  + +   Y+IP
Sbjct: 3   LRIFDRYIWRQVSSSTLTGVLVLTGVMVLGNVFKEMERLLGDTASLPLMAVAQFITYVIP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L    P+        V   M+ + E+  +  TG S   +   V  L+I +S   ++  
Sbjct: 63  YSLIFTIPWALLTAILLVFGRMSADNEMTALRMTGMSMPRICAAVFALSIFMSGVCYLVN 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P  ++ IK+L     L       +            I   +    N L+ + I+ +
Sbjct: 123 VELAPLAKTKIKRLFYDLALDDPAVLFQPGKVLDRFPGYRIFTQERE-GNKLKNVEIIQT 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPI------SKDISI---MKF-- 223
              +  +   A+   + +        + L +  V              +++I   ++F  
Sbjct: 182 NLGRAERYIRAKRAEVVVTPGVTDFQLHLRNATVETGGGEADAASAGGEVNIMNDLQFLY 241

Query: 224 ---KSYTLQTESANSSTIVLKANDQNLSFLLNP------NPNNPNYRPELLETYRSEFHK 274
               + T         T  + ++ ++ S L +       + +      +L+   R+E   
Sbjct: 242 MGDTAITFPLSKLKEKTERVTSSMKDTSALWSEVNTGISSVDGQPLSEKLISVSRTELSM 301

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           R +  L  ++F L+ I       +  QR++    F    I    +  F   ++ + + P 
Sbjct: 302 RYSFSLAAIVFTLVGIPLG----ITAQRRETSIGFALSLIVAVSYMVFVIFVNGLNERPS 357

Query: 335 YIP--ILY---LFLFCISSIFLLMIKKK 357
             P  +++   L    + S     + ++
Sbjct: 358 VYPHLLMWIPNLIFIGVGSRMFYKLNRR 385


>gi|332662936|ref|YP_004445724.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331750|gb|AEE48851.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 538

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 99/286 (34%), Gaps = 12/286 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +  ++      F+++    +F+  +  +   I+ ++        ++++  Y   + 
Sbjct: 10  LKRIDELVITSFIPPFIVAFSVSLFVLLMQMLWIYIDDLAGKGLGFFTVIELLSYRAVSF 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +  ++ +   + EL  + + G S + +++P+L  +I    F +   + 
Sbjct: 70  VPMALPLGILLSSVMLMGNFAEHYELSSMKSAGLSLVRIMRPMLIFSIFTVAFSWYCSDY 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P             Q       L+  +F        I I K   +  T++ + I D  
Sbjct: 130 LIPAANLKFGSRMWDIQQTKPALRLDVGVFNDDFQGFTIHIGKKMSDGRTIKDVIIYDHS 189

Query: 180 DTQTH--KIYYAQSGSIDLDRQAII----LNDGE--VHRKSPISKDISIMKFKSYTLQTE 231
           +  +    +  A+ G +       I    L +G   +  +   S   S   F     +  
Sbjct: 190 EANSGKYTVITAKDGEMFTSEDGNIFVMRLRNGYQCIESRGYQSSSQSKYPFIRTGFKQF 249

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKR 275
           +          + +    L   +    + R      ++   + HKR
Sbjct: 250 TKVFDLTEFSLS-RTNEELFKQSRQTMDSRALKAAADSMALDIHKR 294


>gi|224825295|ref|ZP_03698400.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
 gi|224602216|gb|EEG08394.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
          Length = 366

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 111/294 (37%), Gaps = 15/294 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  + +   + ++ I    Q +  +   +    +   +  + G+    + P
Sbjct: 2   VFQKSLTRELTFTAVSVFVVLLAILVTTQTINLLGRAAEGRIANEAVAALIGFWTLGLFP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT + R+ E+ +   +G S    +KPVL  A+ L+I + IS  +I 
Sbjct: 62  LLLILTVFISVLVVLTRLWRDHEMAVWLASGVSLKDWVKPVLRFAVPLAILVGISSLLIG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLF--FRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           P       + +   +     S +   +F        +Y   +    N +   IF+ D   
Sbjct: 122 PWAEQRSHEYAEILKQHEDVSAISPGIFKESHSSRRVYFVENFSGKNGSAANIFMQDMSK 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +     +A+SG I  + Q    ++L +G  +  +P   D  + +F  Y++         
Sbjct: 182 GKVAS-IFAKSGRIVTNEQGERLLLLENGRRYVGNPGEADYEVAEFARYSVVINDQPQFI 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +     S  L  +    +         ++E   R++  +  V+  L++I 
Sbjct: 241 PSGNSRQTMTSAALALSDKAGD---------KAELGWRVSMPISTVVLALLAIP 285


>gi|261342656|ref|ZP_05970514.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
 gi|288315304|gb|EFC54242.1| inner membrane protein YjgP [Enterobacter cancerogenus ATCC 35316]
          Length = 366

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 136/378 (35%), Gaps = 37/378 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVKILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  D   +   +    N    +F+   R   
Sbjct: 122 PASSRHQDEVLAEAKANPGLAALAQGQFQQASDGNSVLFIESVDGNRFNDVFLAQLRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGQLSQRKDGSQVVTLNKGTRFEGTAMLRDFRITDFQNYQAIVGHQTVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N+  L+  + +            R+E H R+T      +  L+ +       
Sbjct: 242 DPTDTEQMNMRTLIATDSD----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----------PYYIPILYLFLFCI 346
             RQ +      +S+  +  ++  F  +   I+ N            + +  LYL L   
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQTSIKSNGGKGKIDPAIWTWVVNGLYLLLAVG 344

Query: 347 SSIF----LLMIKKKYTK 360
            +++    +  I+ ++T+
Sbjct: 345 LNLWDTVPVRRIRARFTR 362


>gi|254521723|ref|ZP_05133778.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
 gi|219719314|gb|EED37839.1| permease YjgP/YjgQ family protein [Stenotrophomonas sp. SKA14]
          Length = 360

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 131/361 (36%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + + + +      
Sbjct: 61  LPLILPLALMLGLLLAIARLYRDSEMAVITAIGVGPKRLLRPLLMLVVPVVLLVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P      +Q+  +A  ++  + LE   F  L +   + +S  +P+ T L  +F+   +
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTELGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
                ++  A  G +  +   ++ + L+DG           D  +  F    +       
Sbjct: 180 KDDRIEVVSAAGGRMFFEGARQRFLELDDGHQVEGPAAGGLDYRLATFARNDVALPDGAQ 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +             L+           +     +++ H+RL   L  + F L+++     
Sbjct: 240 TRTEDDPELMPTLQLI----------GDGRPQAQAQLHRRLAPPLIALAFALLTVP--LG 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R+  RQ++    +   ++   G    F                L+     + ++ + M  
Sbjct: 288 RSSPRQQRYGRMMLALMAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLALSIWMYA 347

Query: 356 K 356
           +
Sbjct: 348 R 348


>gi|319793491|ref|YP_004155131.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
 gi|315595954|gb|ADU37020.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
          Length = 379

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 139/364 (38%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + + + RSF  + + +V I   + +++ + L S  + +   +  +  Y +   +P
Sbjct: 2   LFHSSLRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPQEVFLVMAYTVLGYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  ++G      ++P+   A  + I + +   +  
Sbjct: 62  TILSLSLFIAIVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLILIAVMALVGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNN-TLQGIFIVDSRD 180
           P   S    +  + +       +    F      +    I K  P+  T   +FI  + +
Sbjct: 122 PWANSQTMGMRQQYEQRSDIERVTPGEFRESSGRMRVFFIDKDTPDGATATNVFIW-AIE 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEV-HRKSPISKDISIMKFKSYTLQTESANSST 237
                   A+SG I+       ++L++G+   R    +  + I +FK+Y  +   ++ +T
Sbjct: 181 RGLQITTSARSGRIEDVGPNRFLMLSNGQRLERPLLPTSGLKISEFKTYGTRAGGSSDAT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKR 296
                     +  L  + +              E   R+   L  + F L+++ V++   
Sbjct: 241 ANTTPPRARTTLSLLRDRSTAA---------LGELGWRIGMLLAAINFVLLALTVSSVNP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            + R    +  +F  +     +  G S+I         ++ +L+  +F I+  +L +   
Sbjct: 292 RVGRSGNLLFALFAFVIYYNLLNLGQSWISSGRYGMGTFMLLLHGGVFLIAVAWLGLRNN 351

Query: 357 KYTK 360
            + +
Sbjct: 352 NWAR 355


>gi|194290552|ref|YP_002006459.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
 gi|193224387|emb|CAQ70398.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
           19424]
          Length = 376

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 130/366 (35%), Gaps = 23/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFIVLALLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F      +  + I   + +    + +F+ ++ +
Sbjct: 122 PWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVANA-E 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                +  A  G  +      + +++ +G  +  +P   D  I++F+ Y ++ ++    S
Sbjct: 181 ADKIGVALAHQGQFETMPNGDRLVVMENGRRYSGTPGQIDYRIVEFERYAVKVDNKPPES 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              L    ++   L+ NP   N             E   R++  +    F +I+I  A  
Sbjct: 241 EASLPPKSRDTIDLIRNPTRENLG-----------ELVWRISLPILAFNFVMIAIPLA-- 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMI 354
             +  +  +  P+  ++ I        +     +   +  +    +     +    LL+ 
Sbjct: 288 -YVNPRLGRYTPLVFAVLIYLTYSNLINLSQSWVRNGSIPFWLAWWPIHLAVFLGALLLF 346

Query: 355 KKKYTK 360
           + +  +
Sbjct: 347 RYRQNR 352


>gi|313892370|ref|ZP_07825962.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
 gi|329121341|ref|ZP_08249967.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
 gi|313119229|gb|EFR42429.1| permease, YjgP/YjgQ family [Dialister microaerophilus UPII 345-E]
 gi|327469750|gb|EGF15216.1| YjgP/YjgQ family permease [Dialister micraerophilus DSM 19965]
          Length = 361

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 119/356 (33%), Gaps = 26/356 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           M+  + YIL+     FL        I      +L     ++    S    +KI    IP 
Sbjct: 1   MRILDKYILKEFLGPFLFGVAAFTAIFLGSDTLLSIAGFITKYGASSLSAIKIFILAIPR 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +     ++S++  +EL+++ N+G S + L  P+   + ++SI       
Sbjct: 61  IIVYTFPMAVLLGALMCMSSLSGASELIVMRNSGQSFLRLAMPIFIFSAIISICAIAFNE 120

Query: 120 IIEPKCRSTI---------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NT 169
            + P               K L+      +    +++     L     I   KYNP    
Sbjct: 121 FVVPWTNREYQYILDVEIKKNLNPDIVDNIVMKDIQDGNLLHL-----IYAKKYNPETKE 175

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT-- 227
           L+ I I + +D +  KI  +                G  +  +P   +   + F S    
Sbjct: 176 LKDITIQEFKDGKPVKIEMSPKA--VWKEGVWDFKQGVAYDITPDGVEHK-LSFDSQAVP 232

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
              +            + ++S L     +      +   ++  E HKR +  +  ++F +
Sbjct: 233 FIQKPDEIKNSNNNVGEMSISEL-KKTADLLKSANQDPTSFYMEIHKRFSLPIASLVFAI 291

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           I      +    +QR      F    I   +++     +  + +     P   ++L
Sbjct: 292 IGAPLGIR----KQRSSSSIGFGISVIVIFIYYAVMTFMEAMGEGHILPPFAAVWL 343


>gi|322506460|gb|ADX01914.1| permease [Acinetobacter baumannii 1656-2]
 gi|323516339|gb|ADX90720.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 350

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 123/340 (36%), Gaps = 16/340 (4%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M    +  I    ++++   + +      +IL  I GY +P  L ++ P  F +    V 
Sbjct: 1   MVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVF 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
             +  + E+ +++ +G SR  L + ++ + ++  +   +    + P      ++L+    
Sbjct: 61  GRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQA 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--RDTQTHKIYYAQSGS- 193
           +   F  +    F        I     + +   L+ IF      ++ +   +  A+  + 
Sbjct: 121 VRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATR 179

Query: 194 --IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
             +  D   ++ L  G  +   P     +  +F+SY L+ E+           +   +  
Sbjct: 180 VEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSK 239

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L    N+P          RSE   RL      +I  ++S+  ++      +  ++ P   
Sbjct: 240 LFSKANDPVV--------RSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIF 291

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             +    +       I K E + +  P+  L     +++F
Sbjct: 292 IFASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 331


>gi|241663806|ref|YP_002982166.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
 gi|240865833|gb|ACS63494.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
          Length = 372

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/367 (15%), Positives = 128/367 (34%), Gaps = 26/367 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   + N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFILLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRD 180
           P           + +     S +    F       Y+   +   N     + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDNGMKHARNVFVANAEQ 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +   +  A++G         + I+L+ G  +  +P   D  I++F  Y ++  +    +
Sbjct: 182 DKIG-VAMAKTGEFKTMPNGDRFIVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQA 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              L    ++   LL NP P N             E   R+   L  + F LI+I  A  
Sbjct: 241 DANLPTKSRSTKDLLANPTPENLG-----------ELVWRIGLPLLALNFVLIAIPLA-- 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI---FLL 352
               R  +    IF  L   +  +     +             +  +   +++     LL
Sbjct: 288 YVNPRLGRYTPMIFAVL--IYLTYSNLLNLSQAWVSQGKMNVFMAWWPIHLAAFICAVLL 345

Query: 353 MIKKKYT 359
              + Y+
Sbjct: 346 FRFRHYS 352


>gi|171059277|ref|YP_001791626.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
 gi|170776722|gb|ACB34861.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
          Length = 364

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 109/282 (38%), Gaps = 21/282 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + + + RSF  + + I+ I   + +++ +   +    S   ++ + GY     LP
Sbjct: 2   LFDSTLRKELSRSFGGTLIVILTIVLTMMLIRTLGQAALGRVSPQDVVLLLGYTSLGHLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +   + LT M  ++E+ I   +G S    ++PV+     +  F+      + 
Sbjct: 62  TMLCLSLFVAVVSTLTRMYGDSEMTIWFASGVSLTRFVRPVVRFGTPIVFFVAALLLFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P     I +L  + +     S +    F    +      I K +P+  T + IFI+D R 
Sbjct: 122 PWSNRNISELRGRYEQRSDLSRVAPGQFQTSSNGQRVFFIDKQSPDAGTGRNIFILDQR- 180

Query: 181 TQTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                +  AQ+G I     D   + ++L++G         +  +I +F  Y+++      
Sbjct: 181 VDRESVTSAQTGRIDLPDADDTHRRLVLDNGARTDLDLKGETRTISRFDQYSIRISEKAL 240

Query: 236 STIVLKANDQNLSF--LLNPNPNNPNYRPELLETYRSEFHKR 275
           + I         SF  LL+ +P             R+E   R
Sbjct: 241 TRIDEPPPKARSSFDLLLSSDP-----------KVRAELAWR 271


>gi|166364704|ref|YP_001656977.1| permease [Microcystis aeruginosa NIES-843]
 gi|166087077|dbj|BAG01785.1| permease [Microcystis aeruginosa NIES-843]
          Length = 387

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/367 (10%), Positives = 128/367 (34%), Gaps = 35/367 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y++  +   FL S      +   +  +    N V  +   L   L+I    +P 
Sbjct: 14  IALIDRYLISQLLPPFLFSVGLFASLGVAIGNLSDLANQVVDANLPLASALEILLLKVPE 73

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    + T      ++ ++E + + + G +   L  P   L++++++  F+   
Sbjct: 74  FVTYSLPVSLLLATLITYGRLSSDSETVALQSCGVTLYRLFIPTFCLSLIVTVVTFLLNE 133

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-------------DDLYIKISKYNP 166
            + P       ++  + ++    S+ +   F+  D             + + +  ++   
Sbjct: 134 YVVPNANYRATEILVQ-KINKEASFWKNKDFYYPDYEIKTLENGTINRNLISLFYAEQFD 192

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKS 225
              ++ + ++     + ++I  A S   +         +G ++  +P +     ++ FK+
Sbjct: 193 GEKMKTVTVIRWLKQELNQIIIADSARWNAVDNVWDFFNGIIYELTPPNASYRQVIPFKA 252

Query: 226 --YTLQTESANSSTIVLKANDQNLS------FLLNPNPNNPNYRPELLETYRSEFHKRLT 277
               L   + + +       + N+        LL  + ++     + +  ++    +++ 
Sbjct: 253 EKIALSRSAFDFARQSRDPYEMNIPQAIEYVQLLKLSGDD-----KRVRFFQVRIQQKIA 307

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYI 336
                ++F  I              +        LS++   +++  ++++  +       
Sbjct: 308 FPFVCIVFATIGCALGSLPQ-----RISRGTSFGLSVAIVFLYYLLNFLVGSLGLTATLS 362

Query: 337 PILYLFL 343
           P L  +L
Sbjct: 363 PFLAAWL 369


>gi|258544323|ref|ZP_05704557.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258520403|gb|EEV89262.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 352

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 134/361 (37%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++R     FL + L ++ I    ++   +   ++   +L+ +  + G      
Sbjct: 1   MPILYRYLIRETLAVFLATNLILLAILLSFRLSTLLAAAAAGNMALSAVWMLIGLQAVRF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P  F +     L  + R+ E+      G +     + +L  AI + + L      
Sbjct: 61  LVILMPLAFVLAAVMTLGRLYRDHEISAALACGIAPRHQTRALLACAIPIGLLLLTLSMS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + L  +AQ          N + RLDD   +          L+  FI     
Sbjct: 121 VLPRVYRGQEALRQQAQQEAGMILFTPNTYRRLDDGTIVHTGSIE-GGQLRDFFIARDEP 179

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              H +  A +G +  D Q   ++L+DG     +          F           ++T+
Sbjct: 180 DGGHSLILAANGEMQGDEQQRHLLLHDGRRLAWNADHDPAHTTLFTYQHADLRLPGANTL 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              ++++    L N   +     PE L  ++S  +  +  +++ +   L++      R+ 
Sbjct: 240 AASSDNR----LRNLPTSELGTSPEHLSEWQSRSNPAVALFIYALALPLLA------RSQ 289

Query: 299 VRQRK--KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            RQ +  KI P FI+ ++   +    +  I K +Q P      +L    ++ I +   + 
Sbjct: 290 PRQGRYQKIVPAFIAFALYINLLDLITIAIRK-QQIPPLPGSYWLHGAVLALILICWQRS 348

Query: 357 K 357
           +
Sbjct: 349 R 349


>gi|329907053|ref|ZP_08274545.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547110|gb|EGF31984.1| hypothetical protein IMCC9480_3108 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 376

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 134/367 (36%), Gaps = 27/367 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    +   +L + G+     +P
Sbjct: 2   IFQRALRRELISTAGAVFTTLFTITITVMLIKILGQAAGGKVASEDVLALIGFAALNYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++   +G S    I  VL   + + + + +      
Sbjct: 62  VILILTTFISVLLVVTRSYQDSEMVVWFASGLSLTRWIPTVLSCGLPVVLVIALLSFYAT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNNT-LQGIFIVDSRD 180
           P    +  +   + +     + +    F      +    +     +   ++ +F+   RD
Sbjct: 122 PWANRSSSEFRERFEKRADIAKVAPGKFQESASSNRVFFVEGVTGDAMNVRNVFVNTVRD 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSS 236
                I  ++ G  ++D      ++L++G  +  +   +D  +M+F+SY +   SA    
Sbjct: 182 -GKSSIVVSKEGRTEVDANGDKFLVLSNGRRYEGTLDERDFQLMEFESYGVLISSAVPGL 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              L +   +   LL NP+              + E   RL+  L  +   L++I     
Sbjct: 241 MADLSSRSMSTMALLANPD-----------GFNQGELLWRLSLPLMCLFLMLLAI---PL 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIF 350
             +  +  +   + I+L +        S +   + QN       + P+  L +  I+ +F
Sbjct: 287 GFVNPRGGRSANLIIALLLFVFYSNMISLMQAAVAQNRLGVWLAWWPVHVLAMAVIALLF 346

Query: 351 LLMIKKK 357
              +K  
Sbjct: 347 SWRLKMN 353


>gi|86605895|ref|YP_474658.1| YjgP/YjgQ permease [Synechococcus sp. JA-3-3Ab]
 gi|86554437|gb|ABC99395.1| putative permease, YjgP/YjgQ family [Synechococcus sp. JA-3-3Ab]
          Length = 400

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 127/378 (33%), Gaps = 29/378 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIV-FIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   F          +  V  + + + LV  +  SL+  L++     P +
Sbjct: 26  GLMDRYIISEMLLPFFFGVGAFTTLVMAVGSLFELVRLVVEAGLSLSAALQVFVLRAPGI 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T      ++ + E+  +   G S   L+ P L L++L++   F+   +
Sbjct: 86  IVLTFPMSMLLATLLAYGRLSADNEITALRGCGVSLYRLVVPALLLSLLVTTLTFLFNEL 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---------------ENLFFRLDDDLY--IKISK 163
           + P           +A         E               +  F R    L        
Sbjct: 146 VVPVSNRQAALTLNRALNRTPEFRRENILYQEFGEILAPEPDGTFSR-RQGLTRQFYARS 204

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
           ++    ++G+ ++D  +    +I  AQ G  D      +  +G  +  SP     +I  F
Sbjct: 205 FD-GQQMRGVIVLDLSNEALSQILLAQQGRWDPQENLWVFEEGTNYIVSPDGTYSNIATF 263

Query: 224 KSYTLQT--ESANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWL 280
               L+      + +  V    + N+  L        +    + +   +    ++     
Sbjct: 264 ARQELRLPRAPLDLAQEVRSPEEMNIQELRRYIEVIASSGDLQGVRRLQVSLSQKYAIPF 323

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--I 338
             + F LI    A +    ++      + +S+ I F  +    ++   + Q     P   
Sbjct: 324 ACLAFTLIGAPLALRP---QRTSSSLGLGLSVLIIFAYYV-LLFVSQALGQIGTLGPEVA 379

Query: 339 LYLFLFCISSIFLLMIKK 356
            +L  F  S++ L ++ +
Sbjct: 380 AWLPNFICSAVGLGLLYR 397


>gi|16332044|ref|NP_442772.1| hypothetical protein sll0496 [Synechocystis sp. PCC 6803]
 gi|1001356|dbj|BAA10843.1| sll0496 [Synechocystis sp. PCC 6803]
          Length = 394

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/374 (10%), Positives = 125/374 (33%), Gaps = 26/374 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+ R +   FL S   +  +   +  +    N +      +    ++    +P 
Sbjct: 21  ISLMDRYVARQLIPPFLFSVGVVASLGLAIGNLSDLGNKIVEKNLPVAKAAEVLLLKVPE 80

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L    P    + T      ++ + E++ I + G S   LI P + L++L++ + F+   
Sbjct: 81  FLAYSLPVAVMLATMMTFGRLSGDCEIIAIRSCGVSLYRLILPAVVLSLLVTGWAFVLTE 140

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLY-------IKISKYNP 166
            + P        +  ++       +   ++F       +LD+          +   K++ 
Sbjct: 141 WVVPVANYRATSILIESIDEEHPFWQNRDVFYPEFEEIKLDNGQTARRLKSLVYAEKFD- 199

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
              +Q + ++   +     I  + + + + D +      G V+R +        + F + 
Sbjct: 200 GKEMQNLTVLQWTENHLKHIVLSDNATWNNDNKRWDFFHGTVYRLTETEDYQEAVPFTNK 259

Query: 227 TLQT--ESANSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            +     + + +       +  ++     +       + +       R+E  ++L     
Sbjct: 260 QIALPQSAFDFARQGRDPYEMTIAEAQDYIKILKLIGDEKKTQFFQVRTE--QKLAFPFV 317

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK-IEQNPYYIPILY 340
            ++F ++      +    ++  +     +++ I F  +    +     I          +
Sbjct: 318 CIVFAVVGSAIGARP---QRISRATGFGLTIVIIFAYYILGFFSGSLGIVGLISPTLAAW 374

Query: 341 LFLFCISSIFLLMI 354
           L  F    + + ++
Sbjct: 375 LPNFVGLGVGIWLL 388


>gi|190572727|ref|YP_001970572.1| putative transmembrane permease [Stenotrophomonas maltophilia
           K279a]
 gi|190010649|emb|CAQ44258.1| putative transmembrane permease protein [Stenotrophomonas
           maltophilia K279a]
          Length = 360

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 130/361 (36%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + +   +      
Sbjct: 61  LPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPRRLLRPLLMLVVPVVALVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P      +Q+  +A  ++  + LE   F +L +   + +S  +P+ T L  +F+   +
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTQLPNGGVVYLSSISPDGTQLGRVFLQ-RQ 179

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
                ++  A  G +  +   ++ + L+DG           D  +  F    +       
Sbjct: 180 KDDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGLDYRLATFARNDVALPDGAQ 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +           + L   +               ++ H+RL   L  + F L+++     
Sbjct: 240 TRTGDDPELMPTTQLFGDDRPEAQ----------AQLHRRLAPPLIALAFALLTVP--LG 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R+  RQ++    +   ++   G    F                L+     + ++ + M  
Sbjct: 288 RSSPRQQRYGRMMLALMAYMVGTNLMFIGSGWIANGKIPPALGLWWLTLPLLALAIWMYA 347

Query: 356 K 356
           +
Sbjct: 348 R 348


>gi|33865647|ref|NP_897206.1| permease [Synechococcus sp. WH 8102]
 gi|33632817|emb|CAE07628.1| possible permease [Synechococcus sp. WH 8102]
          Length = 385

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 121/371 (32%), Gaps = 21/371 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  I    L +      +   +  + + +  +          L++    +P  L
Sbjct: 14  LLDRWLVGEILAPLLFAVAAFTVVGLSIGVMFELVRRLVEDGLPAWTALQVMLLSLPRFL 73

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P      T    + +  N+EL  + + G S + L+ P L L+ LL+    +  ++I
Sbjct: 74  VLSFPMATLFATLLAYSKLTANSELTALRSVGVSTVRLVVPALVLSALLTGMTLLFNDVI 133

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYNPN 167
            P+  +  +    KA      +   +++ +     +                   +++  
Sbjct: 134 VPQANTQAEVTLQKALGRALATEKGKDIIYSRFGRVREPGSERSGRGLKQLFYSRRFDK- 192

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             +  + ++D       ++  A+    +         DG++   + ++   + + F  Y 
Sbjct: 193 GEMVDVTVLDFSRAGFRQMLVAERALWNEGEAKWEFRDGQILTLN-LNGSTTRVDFDRYL 251

Query: 228 LQTESANSSTIVL--KANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVI 284
               S       L   AN+  ++  +            +     +    ++ T  +  V+
Sbjct: 252 YPLSSGPLKVARLPDDANNMTIAEAIEAERVEAEAGNLKAARKLQVRIQEKFTFPMACVV 311

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI   +   R   R  +        L I       FS+    ++     +   +L + 
Sbjct: 312 FGLIG-SSLGSRPGSRTSRSQGFGISILLILGYYALSFSFSSLGVKGVLPALLAAWLPVL 370

Query: 345 CISSIFLLMIK 355
                  L+++
Sbjct: 371 ISLGAGTLLLR 381


>gi|113953439|ref|YP_730497.1| membrane protein, YjgP/YjgQ family protein [Synechococcus sp.
           CC9311]
 gi|113880790|gb|ABI45748.1| putative membrane protein, YjgP/YjgQ family protein [Synechococcus
           sp. CC9311]
          Length = 392

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 133/365 (36%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  V  +   +  +  S     I +++    +P+ L
Sbjct: 22  LIDRWLLGELIGPLLFALTAFTVVSLSVGVMFDLVRKIVESNLPWTIAVQVLLLKLPSFL 81

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M +    + ++ N+EL  + + G +   +I P + LA+L++   F+  ++I
Sbjct: 82  VISFPMATLMASLLAYSRLSANSELTALRSVGVTASRMIAPAIALALLMTSLSFLFNDVI 141

Query: 122 EPKCRSTIKQLSAKAQLALTFS----YLEENLFFRLDD-------DLY--IKISKYNPNN 168
            P+   + +    +A      +     +  + F R+ +        L       ++  + 
Sbjct: 142 VPRTNRSAEFTLQRALGKAIAAEKGDDIVYSRFGRVAEPDGKSSKGLTQLFYAREFE-DG 200

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           T+ G+ ++D       ++  A     +  +     NDG++   +P     S   F  Y  
Sbjct: 201 TMIGVTVLDLSRFGFTQMLVADKAKWNQSQAKWEFNDGQILTLTPSGSTTS-ADFDRYLY 259

Query: 229 QTESAN--SSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
               A    + +   AN+  +S  +      +     +     R    ++ T  +  ++F
Sbjct: 260 PLSPAPLRIAKLPKDANNMTVSEAIEAEQLLSDAGDRKEARRLRVRIQEKFTVPMACLVF 319

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K     +  +     IS+ + F V++  S+    +       P L  +   
Sbjct: 320 GLIGSSLGAKPNS--RTSRSQGFGISVVLIF-VYYVLSFSFSSLGVKGTLAPFLAAWGPV 376

Query: 346 ISSIF 350
           + S+ 
Sbjct: 377 LISLA 381


>gi|331007487|ref|ZP_08330658.1| putative permease [gamma proteobacterium IMCC1989]
 gi|330418711|gb|EGG93206.1| putative permease [gamma proteobacterium IMCC1989]
          Length = 408

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 133/370 (35%), Gaps = 25/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + + ++       ++ I    + ++ +   ++      +L  +  Y +P  + 
Sbjct: 30  IIPRYLTKEVLQTTFAVTSVLLIIIMSGRFVKYLAEAAAGKIDARVLFAVMFYRLPGFME 89

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +  ++E+ ++ + G SR  LI      A ++ I +      + 
Sbjct: 90  LILPLGFFVSILLAYGRLYTDSEMTVLFSCGVSRKQLIAWTYIPAGIVLIIIATLSLWLT 149

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P      +++ A+ Q    F  ++E  F    +  L       + N      F + + + 
Sbjct: 150 PLGLHEAEKILAQQQARNDFETMQEARFQVSRNKSLVSYTEDISDNREQLNAFFLANMNV 209

Query: 182 QTHKIYYAQSGSI-------DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-A 233
              +        +       + D++ ++L  G  +   P + +  I +F+ +    +   
Sbjct: 210 GADEPLMTVRSEVAEYKILGETDQRYLVLKRGARYEGQPGTANYRITEFEEFGQHVDPKG 269

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +    K N      LL  +  +          Y++    RL+  L  +I  L+ ++  
Sbjct: 270 EIAVTNNKVNRLPTVELLGSDLPD----------YQAALQWRLSSPLVVLIVTLLGVLF- 318

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYL--FLFCISSIF 350
                  +R +   +F ++ +        +     + EQ       L+   F+F + +I 
Sbjct: 319 --SHTNPRRGRYAMLFPAILLYLIYLVLLNSARGAVEEQRLSSAIGLWGVHFMFFVLTIS 376

Query: 351 LLMIKKKYTK 360
           LL  K+++ +
Sbjct: 377 LLADKQQWKR 386


>gi|85859085|ref|YP_461287.1| permease [Syntrophus aciditrophicus SB]
 gi|85722176|gb|ABC77119.1| permease [Syntrophus aciditrophicus SB]
          Length = 359

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 137/358 (38%), Gaps = 10/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R   R FL+  L  + +  ++   +++ ++ + + +   +L    + IP +
Sbjct: 1   MTILDRYISREFLRFFLLVILSFLSLFLIVDFFEKLKMLINYSATFYQILAFFFFRIPMM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + +     S+++N+E++ +  +G S      P+L ++ L+++F F+   +
Sbjct: 61  LSLTIPAAVLLSSLLTFGSLSKNSEIVAMRASGVSLYRSSIPILLISFLIALFTFVFSEL 120

Query: 121 IEPKCRSTIK-QLSAKA-QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VD 177
           I P      +     +  +  +   + +E +++R    +Y        +NTL+GI +   
Sbjct: 121 ITPYANEKAEYIRKVEIEKKEIQGIFKQEQIWYRGTRGIYNFKLFDPEHNTLRGITLNYM 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            R         A+      DR   +  +  + R       +     +      E+ +   
Sbjct: 181 DRKMNLIMRVDAERA--VWDRNQWVFYNLLIVRFDSAGFPVMERYGEKILDFPETPSDFR 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           ++ K ++Q   F L                Y ++ H ++      V+  +I I  + K  
Sbjct: 239 VIQKDSEQMGYFELRKYVQKIRTEGYDATRYLADLHGKIAFPFVCVLLAVIGISFSLK-- 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLL 352
             R       IF  L I F  +  F++ +         P     L   LF +S++ L 
Sbjct: 297 TERSGGLAGSIFAGLIIGFSYWILFAFSMSLGRSGTLPPLLAAWLANLLFGLSALVLF 354


>gi|261416539|ref|YP_003250222.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372995|gb|ACX75740.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326800|gb|ADL26001.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 478

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 6/239 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L+ +   FL S   I F+  V  +++ ++ V S     + +L+I    +  +L 
Sbjct: 2   ILVRYVLKELIGPFLASLFGITFLFVVDFLVKILDNVLSKGLPTSTVLEIFVLNLAWMLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + +      M+ + E+  +   G S ++L++PVL +A+LLS+ + +  N + 
Sbjct: 62  LSIPMAVLVASLMTFGRMSGDQEITAVKAAGISPLSLMRPVLLVALLLSVLMVVFNNWVL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
           P+      +L           +++          + + +++ +P + TL GI I +    
Sbjct: 122 PEANHRSVELMNAVSRKKPHVFIDAGRLITQFPGVQLWVNRIDPVSGTLYGIQIFEMEKK 181

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANS 235
              +I YA S S+D         + L  GE H   P   D    ++F S  L  ++ + 
Sbjct: 182 GAPRIVYADSASMDYVDNGATLMLRLRSGETHLVDPDDSDNYFRIRFFSQDLAMQNVDD 240



 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +    Y  E HK+ +      IF LI    A    + R+      I  SL+  F ++W  
Sbjct: 344 KRAAQYMVEIHKKFSTAFACFIFVLIG---APLGIMARKGGIGTGILYSLAF-FVIYWIC 399

Query: 323 SYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMIKK 356
                 +       P   +++    I ++ +L+ + 
Sbjct: 400 LIGGENLADRLIVSPELAMWISNIIIGAVGILLTRA 435


>gi|126696921|ref|YP_001091807.1| putative permease [Prochlorococcus marinus str. MIT 9301]
 gi|126543964|gb|ABO18206.1| possible permease [Prochlorococcus marinus str. MIT 9301]
          Length = 401

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 136/376 (36%), Gaps = 23/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  V  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRS-TIKQLSAKAQLALTFSYLEENL-FFRLDDDLY---------------IKISKY 164
            P       K L A    + +    ++N+ F R    +                I  + +
Sbjct: 145 VPASNKLAEKTLRAGIGSSFSAEQRKDNIMFSRYGSRISSSNKKPTKTNTFLTHIFYASW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             NN ++G+ ++D       +I  A++G  D    + I +DG +    P  +  +I +F+
Sbjct: 205 YENNIMEGVTVLDFSREDFQQILKAKNGVFDKKSSSWIFSDGNIVSIDPSGQTTNI-QFQ 263

Query: 225 SYTLQTESAN--SSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
            YT          + +   AN+  L   +            + +   +    ++ T    
Sbjct: 264 EYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYEKTGNLKEIRRIKVRIQEKFTLPFA 323

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++FGLI   +   ++ +R  K        + I       F +    ++     I   +L
Sbjct: 324 CLVFGLIG-SSLGSKSNLRSSKSQGFGLSVILILIYYVMSFLFSSFGVKGILPPIFAAWL 382

Query: 342 FLFCISSIFLLMIKKK 357
            +       + ++++ 
Sbjct: 383 PVLISLGGGIYLLRRS 398


>gi|294648981|ref|ZP_06726429.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825116|gb|EFF83871.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 123/355 (34%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    Q+++     +       +LL I  Y +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQGRLDGGVLLSIIAYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + +L +  +  I   +      
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIV--DSR 179
                  + L     +   F  +    F        I     + +   L+ IF      R
Sbjct: 122 SAGIRGYQSLMQTQAVRAGFDLVRPKEFISSGS-YTIYAGSLSEDRKNLKDIFYYYKSDR 180

Query: 180 DTQTHKIYYAQSGS---IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +  ++  A+  +   I+ D  +++ L  G  +   P     +  +F+SY L+ E+   
Sbjct: 181 EDKPDQMILAKEATRVEIENDTASVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLENDKD 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                       S  +     +  ++       R E   R+      V+   +++  ++ 
Sbjct: 241 VNFE--------SEDVEALSMSKLWQKRDDFVVRGELGWRIFGPFVMVVALFLAVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     +    +       I K E + +  P + L     +++F
Sbjct: 293 SPRQGRYYRLIPAIFIFASLIVLMIAIKTRISKEELDIWAYPAVLLIYGIAAALF 347


>gi|157157059|ref|YP_001465770.1| putaitve permease [Escherichia coli E24377A]
 gi|157079089|gb|ABV18797.1| putaitve permease [Escherichia coli E24377A]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L +I
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAII 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|54298619|ref|YP_124988.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
 gi|53752404|emb|CAH13836.1| hypothetical protein lpp2683 [Legionella pneumophila str. Paris]
          Length = 359

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 134/373 (35%), Gaps = 30/373 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + +      
Sbjct: 62  LLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPKQLLKHSFAMATVVLVVVAVVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRD 180
           P       +L     +      +    F  ++       +   N +++  + IF+     
Sbjct: 122 PVIAVERTKLIRSTGIKTLVQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 181 TQTHK---IYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                   + +A     +++ Q     I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNRLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     A  ++L  L N N               +E   R++  L  +   L+++ 
Sbjct: 242 TVVMHDDARTAKTRDLWPLNNHNLKK-----------AAELQWRISIPLMVLTLTLVAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISS 348
               R   R  K    +   +   F  +  F ++        + P++I + ++    ++ 
Sbjct: 291 --LSRVSPRSGKYSKLLPAIIIYIF--YANFMFVSRDAIATGKIPWWIGMWWVH-AAVAI 345

Query: 349 IFLLMIKKKYTKI 361
           + +L I +   K+
Sbjct: 346 LGILFIWRNQVKL 358


>gi|261749398|ref|YP_003257083.1| hypothetical protein BPLAN_316 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497490|gb|ACX83940.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 395

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 144/386 (37%), Gaps = 73/386 (18%)

Query: 36  INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
           ++ ++    ++ I+LK   Y   +++P+V P    + +      ++ + EL+ I ++G S
Sbjct: 1   MDELTGKNINILIILKFIYYFGISIIPLVIPISILLTSIITYGYISESQELIAIKSSGIS 60

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD 155
              ++KP+L +  LLS+ L+   +   P+ +   ++L  +  +      L+E +F  L  
Sbjct: 61  LFRVMKPLLCITFLLSVGLYFFSDFSIPEAKRKAQELGYQISITHPSLRLKEGVFVNLFP 120

Query: 156 DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRK 211
           D +IKI K   +  L+ +FI             A+ G +  +++     I L  G  +R 
Sbjct: 121 DFFIKIGKKKNSKLLENLFIFFYGKNLAINTILAEKGILIPNKKEDGFQIKLMKGFFYRD 180

Query: 212 SPISK---DISIMKFKSY-----------------------TLQTESANSSTIVLK---- 241
           +P         ++ F S+                       TL T+        LK    
Sbjct: 181 NPYEGKTYSYQMVHFNSFIQSFKKPLIEYKNLDYYYDDSYKTLDTKKLMEKIHFLKKKNC 240

Query: 242 --------------------------ANDQNLSFLLNPNPNNPNYRPELLE-------TY 268
                                        ++L   ++   +   ++ + L+        Y
Sbjct: 241 QLYSDFQKLNYNSLFQKKKIFFKRSKNKKRSLLLHISILIDELQHQKKFLQNRKKHLAKY 300

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           + E  K+ T  +  +I  LI    A   A++R+     P  I++ I        +   ++
Sbjct: 301 QFELQKKFTFPVTCIIMFLIG---APLGAIIRKGGMGRPTLIAIIIFIIYHTLLTITQNQ 357

Query: 329 IEQN---PYYIPILYLFLFCISSIFL 351
            E+    P+    +  F+F   SI++
Sbjct: 358 GEKAEIWPWIGAWIPNFVFFPLSIWI 383


>gi|238787644|ref|ZP_04631442.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
 gi|238724431|gb|EEQ16073.1| Inner membrane protein yjgP [Yersinia frederiksenii ATCC 33641]
          Length = 364

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 131/368 (35%), Gaps = 27/368 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I   +       +F+   R  
Sbjct: 122 PWSSKHQDEVLTDARANPSLAALAGGQFKSSTDGNSALFIGNVS-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQTIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A    +  L +    +           R+EFH RLT  +  VI  L+ +      
Sbjct: 241 QDNSVAEQMTMRQLWHATEPDA----------RAEFHWRLTLIVSVVIMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++L+    + + L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQTSLRSNASKGKLDPLVWLWAVNGAYLALAV 343

Query: 354 IKKKYTKI 361
           +   +  +
Sbjct: 344 LLNLWDSL 351


>gi|218692648|ref|YP_002400860.1| hypothetical protein ECED1_5114 [Escherichia coli ED1a]
 gi|218430212|emb|CAR11213.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|324005134|gb|EGB74353.1| putative inner membrane protein [Escherichia coli MS 57-2]
          Length = 366

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 134/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++S L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMSTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|238798772|ref|ZP_04642243.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
 gi|238717404|gb|EEQ09249.1| Inner membrane protein yjgP [Yersinia mollaretii ATCC 43969]
          Length = 364

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 128/365 (35%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALGTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I           +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVT-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A    +  L   N  +           R+EFH RLT  +  VI  L+ +      
Sbjct: 241 QNSNVAEQMTMKQLWRSNEADA----------RAEFHWRLTLIVSVVIMALLVVP--LSA 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+L+++    + + + +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLLWMWTVNGTYLAIAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|254445062|ref|ZP_05058538.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259370|gb|EDY83678.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 388

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 121/389 (31%), Gaps = 34/389 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPT 59
           M     YIL+ +  S + S     F+   + +++  +NL++    ++    +++  L P 
Sbjct: 1   MTLIHRYILKNVFVSCMASVAMFAFLILTMSLVKDMLNLLAEGQLTVGAFFRLTKLLFPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V     P  F       +  ++   E+  +   G S I L   V  LAIL +    +   
Sbjct: 61  VFVYALPMGFITGALLTMGRLSAENEITSLRAAGVSVIRLSSSVFLLAILGTTASLVVNF 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-S 178
              P  ++  +Q            ++ E  F +      I + K      L  ++I   +
Sbjct: 121 YYGPLAKTEYRQELKNTIQTNPLGFIVEKTFVKDFTGSVIYVGKKEAE-MLYDVWIWKLN 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN---DGEV--HRKSPISKDISIMKFK-------SY 226
            ++Q      A+ G       +  L    +G    +R +   ++     F         +
Sbjct: 180 SESQVTTFARAEKGRFAFLENSAELQLDAEGVTIEYRDAEDPENFRTRNFYPASAAKFPF 239

Query: 227 TLQTES-ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE-----------FHK 274
           +   E      T+  K        L                  R E           FHK
Sbjct: 240 SFSLEKILGKETLARKLTWMTFDELQGEIRKYEGIAATATGAVREEALDNLLKAKMVFHK 299

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
                   + F  I+I    K +   +++    + I + +    +      I  +E  P 
Sbjct: 300 NFAMGFAVLSFACIAIPLGLKTS---RKETSANLGIGVGMGLLYYLA-MISIEWLEGRPD 355

Query: 335 YIP--ILYLFLFCISSIFLL-MIKKKYTK 360
             P  + ++      S      I+  + K
Sbjct: 356 LRPELLFWIPNLAYQSFGAWLFIRADHGK 384


>gi|148358635|ref|YP_001249842.1| permease [Legionella pneumophila str. Corby]
 gi|296108275|ref|YP_003619976.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|148280408|gb|ABQ54496.1| permease [Legionella pneumophila str. Corby]
 gi|295650177|gb|ADG26024.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 359

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 137/373 (36%), Gaps = 30/373 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVD--- 177
           P       +L     +      +    F  ++       +   N +++  + IF+     
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +     + +A     +++ Q     I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               +     A  ++L  L N +               +E   R++  L  +   L+++ 
Sbjct: 242 TVVMNDDARTAKTRDLWPLNNHDLKK-----------AAELQWRISIPLMVLTLTLVAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISS 348
               R   R  K    +   +   F  +  F ++        + P++I + ++ +  ++ 
Sbjct: 291 --LSRVSPRSGKYSKLLPAIIIYIF--YANFMFVSRDAIATGKIPWWIGMWWVHV-AVAI 345

Query: 349 IFLLMIKKKYTKI 361
           + +L I +   K+
Sbjct: 346 LGILFIWRNQVKL 358


>gi|194364315|ref|YP_002026925.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347119|gb|ACF50242.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 360

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 129/361 (35%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MLKLDRYLLGDFVQSFLATLIVLLVVSVGGVLVDILGNIADGRLPAKLLFSQLGLQFIAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     +  + R++E+ +I   G     L++P+L L + +   +      
Sbjct: 61  LPLILPLALMLGLLLAVARLYRDSEMAVITAIGVGPKRLLRPLLMLVLPVVALVGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P      +Q+  +A  ++  + LE   F  L +   + +S  +P+ T L  +F+   +
Sbjct: 121 LGPWAGRVAEQMIIEANRSVLMAGLEPGRFTPLPNGGVVYLSSISPDGTRLGRVFLQ-RQ 179

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
                ++  A  G +  +   ++ + L+DG           D  +  F    +       
Sbjct: 180 KDDRLEVVSAAGGRMFFEGARQRFLELDDGHQVEGPVAGGLDYRLATFARNDVALPDGAQ 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +           + L            +     +++ H+RL   L  + F L+++     
Sbjct: 240 TRTENDPELMPTTKLF----------GDARPEAQAQLHRRLAPPLIALAFALLTVP--LG 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R+  RQ++    +   L+   G    F                L+     +  + + M  
Sbjct: 288 RSSPRQQRYGRMMLALLAYMVGTNLMFIGSGWIATGKIPAALGLWWLTLPLLGLAIWMYA 347

Query: 356 K 356
           +
Sbjct: 348 R 348


>gi|198283963|ref|YP_002220284.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248484|gb|ACH84077.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 368

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 6/234 (2%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R +  SFL++ L ++ I  + Q+ Q +  V+S    L+I+L++ G  +PT+L MV P 
Sbjct: 3   VVRNLTISFLLTSLVVLAILAIGQLTQLLRQVASGQLPLSIILRLLGLALPTLLVMVLPL 62

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F      V +++ R+ E++ I +TGT    L+ PV  +A  +     I      P  + 
Sbjct: 63  AFFFAVYLVFSNLYRSNEMVAIRSTGTGLSGLLPPVAVVAACVFCLELILSLSWAPGAQR 122

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDSRDTQTHK 185
            ++  S +   A   + L+   F  L     I + +    N    Q IF+  ++  Q   
Sbjct: 123 ELQSESVRLANAAAEAMLQPGSFTNLPGGRVIYVGQAVGKNSHRFQEIFLSVAQGGQLDM 182

Query: 186 IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              A  G +   +     ++L DG+ +   P      ++ F  Y +  ++ ++ 
Sbjct: 183 A-TAAYGEVKPAQDGALTLVLVDGQRYLGQPGKAGFKVLSFARYRVLLDNQDTG 235


>gi|78222462|ref|YP_384209.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
 gi|78193717|gb|ABB31484.1| permease YjgP/YjgQ [Geobacter metallireducens GS-15]
          Length = 359

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 134/364 (36%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI     R F +     + I  VI  L++I            + +   Y IP +
Sbjct: 1   MSILTRYIASAYLRVFWLCLASFIAIYLVIDFLEKIGRFLRFDPQWIHVAQFFLYKIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    M T   L  ++RN+E++ + + G S   +  P+L +A   S+F+ +S  +
Sbjct: 61  ATQVIPLAVLMATLLTLGMLSRNSEIIAMRSCGVSLRKISAPILAIACAASLFVIVSNEL 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
           I PK  S ++ +     +   + ++L +N  +  D+   +    ++P+  TL+G+ +   
Sbjct: 121 ILPKTYSQMRFIEEVLIRKKSSNTFLRQNNIWHKDNKAILMARAFDPDHQTLRGVTLWSF 180

Query: 179 RDTQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +  T  +   A+ GS D  +  +        R        +  +  S  +         
Sbjct: 181 SEGMTPSRRIDAEQGSWDGGQWTLWKV---TVRDFQGGGVANTTQIASMPVNLNLQIEDL 237

Query: 238 IVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            V+     N+ FL L                Y ++ H +++     +I   + I  A + 
Sbjct: 238 KVVDKYADNMGFLKLREYIQKLKKGGYETTRYEAQMHSKISLPFASLIMAFLGIPFALRG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYL-FLFCISSIFLLM 353
              R       I  S+   F  F   + +I   +    P  +       +F +S I+L M
Sbjct: 298 --SRSSGVALGIGASIGFGFAYFIINAILISFGQTGVLPSLVSAWAANVIFALSGIWLAM 355

Query: 354 IKKK 357
              +
Sbjct: 356 TLNR 359


>gi|260642684|ref|ZP_05416897.2| putative permease [Bacteroides finegoldii DSM 17565]
 gi|260621031|gb|EEX43902.1| putative permease [Bacteroides finegoldii DSM 17565]
          Length = 632

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 93/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFFMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P++F    L    F  +N+
Sbjct: 64  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLVFFVCGLVGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +KI+K +     L  + I + +
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIPDYNLKIAKKDRKTGMLYDVLIYNLK 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +   I YA SG ++   D+Q + L+
Sbjct: 184 DGFENAHIIYADSGRLEMTADKQHLWLH 211


>gi|78184805|ref|YP_377240.1| permease [Synechococcus sp. CC9902]
 gi|78169099|gb|ABB26196.1| possible permease [Synechococcus sp. CC9902]
          Length = 384

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 135/365 (36%), Gaps = 20/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + ++L  I    L +      +   I ++  +         + + L++    IP+ 
Sbjct: 12  LSLLDRWLLAEIAAPLLFAVAAFTVLGLSIGVMFELARRLVDGLPILVALQLLLLNIPSF 71

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P      T    + ++ N+EL  + + G S I L+ P L L+ILL+   F+  ++
Sbjct: 72  LVLSLPMATLFATLLAYSKLSSNSELTALRSLGVSTIRLVVPALALSILLTGLTFVFNDV 131

Query: 121 IEPKCRSTIKQLSAKAQLALTFS----YLEENLFFRLDDDLY---------IKISKYNPN 167
           I P+  +  +    +       +     +  N F ++ D            +  ++    
Sbjct: 132 IVPRANTQAEITLQRGLGRALATERGKDITFNSFGKIYDPKTQTSSTGLRQLFYARRYEG 191

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             +  + ++D       +++ A+    +  +      +G+V   +P +   + + F    
Sbjct: 192 GEMLDVTLLDFSRADYRQMWIAERAVYNESKAMWEFFNGQVLTLNP-NGSTTRLAFDENF 250

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           Y L +     + +   AND  LS  ++     +     +     R    ++ +  +  ++
Sbjct: 251 YPLSSGPLQVAELPDDANDMTLSQAISAEKVESNAGNIKAARKLRVRIQEKFSFPMACIV 310

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI   +   R   R  +      +S+ +  G ++  S     +  +    P L  +L 
Sbjct: 311 FGLIG-SSLGARPGSRTSRS-QGFGVSILLILG-YYALSVSFSSLGVSGILPPFLAAWLP 367

Query: 345 CISSI 349
            + S+
Sbjct: 368 VLISL 372


>gi|325124204|gb|ADY83727.1| hypothetical protein BDGL_003141 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 350

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 124/340 (36%), Gaps = 16/340 (4%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M    +  I    ++++   + +      +IL  I GY +P  L ++ P  F +    V 
Sbjct: 1   MVISLLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVF 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
             +  + E+ +++ +G SR  L + ++ + ++  +F  +    + P      ++L+    
Sbjct: 61  GRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVFQSVLMLWMTPWGLREFEKLTTTQA 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--RDTQTHKIYYAQSGS- 193
           +   F  +    F        I     + +   L+ IF      ++ +   +  A+  + 
Sbjct: 121 VRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAKEDKPDVMILAKEATR 179

Query: 194 --IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
             +  D   ++ L  G  +   P     +  +F+SY L+ E+           +   +  
Sbjct: 180 VEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTTK 239

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L    N+P          RSE   RL      VI  ++S+  ++      +  ++ P   
Sbjct: 240 LFSKTNDP--------VIRSELGWRLFGPFTIVIALMLSVALSEVSPRQGRYYRLIPAIF 291

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             S    +       I K E + +  P + +     +++F
Sbjct: 292 IFSSLIVLMIAIKTRISKEELDIWAYPAVLVVYGVAAALF 331


>gi|311104770|ref|YP_003977623.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
 gi|310759459|gb|ADP14908.1| hypothetical protein AXYL_01570 [Achromobacter xylosoxidans A8]
          Length = 367

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 132/363 (36%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      ++++ ++     T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVVVLAALSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PVL +AI +++ +     +
Sbjct: 61  LPTILAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVALAVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  ++    P++ L  +F  ++
Sbjct: 121 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESSGGNRVFFAEDPLTPSDELGNVFAREN 180

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   +  A       +    + ++L +G  +   P + +I ++ F  Y L+ ES + 
Sbjct: 181 -GPEWLSVLTASKAHSETMPNGDRFLVLGEGHRYDLKPGTPEIRLVHFDKYGLRLESKSG 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT-QWLFPVIFGLISIVAAD 294
              V +A     +         P    +   +  S+   R++       +  L   + A 
Sbjct: 240 GDPVAEARAN--AERSAKARTTPQLIADNTNSSWSQVMWRISLPLAALNLALLAIPLGAV 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              L R    +    + L     +    ++I +       +   ++     ++++ + ++
Sbjct: 298 NPRLGRSGDLLIAGLVGLLYMNLINLSRAWISNG---KLSFGLGVWAIHAAVAALTVFLL 354

Query: 355 KKK 357
            ++
Sbjct: 355 MRR 357


>gi|307611507|emb|CBX01181.1| hypothetical protein LPW_28801 [Legionella pneumophila 130b]
          Length = 359

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 136/373 (36%), Gaps = 30/373 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q +Q +N  +S +    +++K+    +P ++ 
Sbjct: 2   IIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMG 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K    +A ++ + + I      
Sbjct: 62  LLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVD--- 177
           P       +L     +      +    F  ++       +   N +++  + IF+     
Sbjct: 122 PVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSV 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +     + +A     +++ Q     I+L +G+ ++  P   D  I +F SY  +  + 
Sbjct: 182 QDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPNP 241

Query: 234 NS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     A  ++L  L N +               +E   R++  L  +   L+++ 
Sbjct: 242 TVVMHDDARTAKTRDLWPLNNHDLKK-----------AAELQWRISIPLMVLTLTLVAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISS 348
               R   R  K    +   +   F  +  F ++        + P++I + ++ +  ++ 
Sbjct: 291 --LSRVSPRSGKYSKLLPAIIIYIF--YANFMFVSRDAIATGKIPWWIGMWWVHV-AVAI 345

Query: 349 IFLLMIKKKYTKI 361
           + +L I +   K+
Sbjct: 346 LGILFIWRNQVKL 358


>gi|209749454|gb|ACI73034.1| hypothetical protein ECs5238 [Escherichia coli]
          Length = 366

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 134/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+   + + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPSMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|327396302|dbj|BAK13724.1| inner membrane protein YjgP [Pantoea ananatis AJ13355]
          Length = 308

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 109/307 (35%), Gaps = 25/307 (8%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++  
Sbjct: 1   MAQLILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVI 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P      +Q++  A+     + L    F    D   +   +    N    +F+   R
Sbjct: 61  WLGPWSSRYQEQVTQNAKANPGAAALAAGQFQTSSDGSAVLFLENVKGNQFGHVFLAQLR 120

Query: 180 DTQT--HKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                   +  A SG ++  +     + L+ G     + + +D  I  F +Y        
Sbjct: 121 PKGNARPSVVLADSGHMEQKKDGSQIVTLDKGTRFEGTALLRDFRITDFTNYQAYVGYKQ 180

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           ++      +    + LL+               +R+E H R+T     ++  L+ +    
Sbjct: 181 ATLDPNDVDQATFATLLS----------NKTPEFRAELHWRITLVFAVLVMALMVVP--L 228

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFL 351
                RQ +      +S+  +  ++  F  +   +  +       P +++++  IS + L
Sbjct: 229 SVVNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSSGAKGRLDPAIWMWVVNISYLAL 283

Query: 352 LMIKKKY 358
            ++   +
Sbjct: 284 AIVLNLW 290


>gi|241765203|ref|ZP_04763187.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
 gi|241365132|gb|EER60004.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
          Length = 365

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 142/363 (39%), Gaps = 16/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + S + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVSPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VL+ M R++E++I  + G   I+L+ P+L  A  +   + +    + 
Sbjct: 62  IILSLSLFVAVVGVLSRMYRDSEMVIWFSGGRGLISLLPPLLRFAWPVMAVIALLSLGVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTL-QGIFIVDSRD 180
           P   + I++L  + +       +    F    +      I K  P+  +   IFI  S  
Sbjct: 122 PWANAQIQELKTRYEQRSDIDRIAPGEFQESANGSRVFFIDKDAPDTQVGNNIFIAASNG 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-T 237
            +      A+S  +++    +  +L+ G+    S     + I +F  Y  +   A++S T
Sbjct: 182 PKESVT-SARSARLEIRQGERFALLSQGQRLESSSDHPGLKISEFVEYGTRIGGASASAT 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KR 296
             L    +    LL             +  +++E   RL   L  + F ++ +  A    
Sbjct: 241 EELAVKTRATHELLMQPA---------IPAFQAELGWRLGLALAAINFVILGLALASVNP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R    +  +   +     +  G S+I         ++ +L+     ++ I L +   
Sbjct: 292 RAGRSGSMLFALLAFVVYYNLMTLGQSWIGAGKLGLLSFMLLLHGGTLIMAGIILAIRHN 351

Query: 357 KYT 359
            +T
Sbjct: 352 HWT 354


>gi|146308541|ref|YP_001189006.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
 gi|145576742|gb|ABP86274.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
          Length = 372

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 122/348 (35%), Gaps = 25/348 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I GY IP  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGALDPGVLFLIMGYRIPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +  ++E+ ++  TG S+  L    +  A+++++ +      + P+ 
Sbjct: 65  PLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSR---- 179
            +++ ++  +         L    F  + D        + + + + L+G+F+ + R    
Sbjct: 125 VASVARILNEQDALTELDTLVPGRFQSMKDGSRVTYSQELSADRSELRGVFMSEKRFSSD 184

Query: 180 --DTQTHKIYYAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               +   +  A+SG   I  D    +IL +G  +   P   D  ++++ +Y +      
Sbjct: 185 GSSERGITVLLAESGRQEIQADGSRYLILENGYRYDGEPGEADYRVIQYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +        L   +              ++E   RL+  L   +  L+++    
Sbjct: 245 VAIEASEREAMPTRELFGSDDP----------RVQAELQWRLSIPLLVFVVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
            +   RQ + +  +       +  + G               P L L+
Sbjct: 293 SKVNPRQGRFLKLLPAIF--LYMAYLGLLIAARGALDKGRLPPALGLW 338


>gi|91214820|ref|ZP_01251793.1| putative permease [Psychroflexus torquis ATCC 700755]
 gi|91187247|gb|EAS73617.1| putative permease [Psychroflexus torquis ATCC 700755]
          Length = 516

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 96/256 (37%), Gaps = 16/256 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL    ++FL     ++ I  +  + + I   +     L I+ +   +L+P +
Sbjct: 1   MKILDRYILVSFVKTFLSVFTILMLIFILQSVWRFIEEFAGKDIDLEIISRFLLFLLPNL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PMV P    + +     S     E   + + G S    ++ ++   +LL    F   N 
Sbjct: 61  IPMVLPLTILLTSIMTFGSFAEQYEFAAMKSAGISLQRAMRSLIVFILLLGAVTFYFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNT-LQGIFIVDS 178
           + P     +  +            + E  F  +  ++ IK++K + P+   L  + I   
Sbjct: 121 VIPYAEGKVLNMRKNIAQVKPSLAIIEGAFNDM-GNINIKVNKKSGPDGRNLDDVIIHKK 179

Query: 179 RDT--QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMK-------FKS 225
            +     + +  A  G ++        +++L DG  + + P       +K       F  
Sbjct: 180 SENRVGNYTVIKADHGVLESAETSSVLSLVLYDGNYYDEVPTKTYQQKLKAPFVKSAFDK 239

Query: 226 YTLQTESANSSTIVLK 241
           Y L  + +  + + L 
Sbjct: 240 YILNIDLSGFNDVDLD 255



 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            N    +  LL       H +       +I      V A   A++R+     P+ I++ +
Sbjct: 383 KNQFKRKEILLNKIEMAMHSKYALPFACIILF---FVGAPLGAIIRKGGLGLPMVIAVIV 439

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                +   +  +  E      P L  +L  I   
Sbjct: 440 FLTYHFIGLFAGNSAE-GGSLSPFLGSWLSTIILF 473


>gi|15804853|ref|NP_290894.1| hypothetical protein Z5873 [Escherichia coli O157:H7 EDL933]
 gi|15834492|ref|NP_313265.1| hypothetical protein ECs5238 [Escherichia coli O157:H7 str. Sakai]
 gi|16132083|ref|NP_418682.1| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|26251170|ref|NP_757210.1| hypothetical protein c5362 [Escherichia coli CFT073]
 gi|30065452|ref|NP_839623.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
 gi|56480551|ref|NP_709940.2| hypothetical protein SF4228 [Shigella flexneri 2a str. 301]
 gi|82546486|ref|YP_410433.1| hypothetical protein SBO_4179 [Shigella boydii Sb227]
 gi|89110977|ref|AP_004757.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91213817|ref|YP_543803.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
 gi|110644620|ref|YP_672350.1| putative membrane protein YjgP [Escherichia coli 536]
 gi|117626605|ref|YP_859928.1| hypothetical protein APECO1_2133 [Escherichia coli APEC O1]
 gi|157163736|ref|YP_001461054.1| putative permease [Escherichia coli HS]
 gi|168749567|ref|ZP_02774589.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|168754843|ref|ZP_02779850.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|168760516|ref|ZP_02785523.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|168766552|ref|ZP_02791559.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774017|ref|ZP_02799024.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|168782788|ref|ZP_02807795.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|168784911|ref|ZP_02809918.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC869]
 gi|168797841|ref|ZP_02822848.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|170021731|ref|YP_001726685.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|170083700|ref|YP_001733020.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170681521|ref|YP_001746665.1| putative permease [Escherichia coli SMS-3-5]
 gi|191170651|ref|ZP_03032203.1| putative permease [Escherichia coli F11]
 gi|193063666|ref|ZP_03044754.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|193069837|ref|ZP_03050787.1| putative permease [Escherichia coli E110019]
 gi|195937287|ref|ZP_03082669.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807252|ref|ZP_03249589.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208812743|ref|ZP_03254072.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208819114|ref|ZP_03259434.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209395855|ref|YP_002273806.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|209921758|ref|YP_002295842.1| hypothetical protein ECSE_4567 [Escherichia coli SE11]
 gi|215489603|ref|YP_002332034.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324429|ref|ZP_03440513.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218556808|ref|YP_002389722.1| hypothetical protein ECIAI1_4492 [Escherichia coli IAI1]
 gi|218561419|ref|YP_002394332.1| hypothetical protein ECS88_4848 [Escherichia coli S88]
 gi|218698009|ref|YP_002405676.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218707867|ref|YP_002415386.1| hypothetical protein ECUMN_4793 [Escherichia coli UMN026]
 gi|227886685|ref|ZP_04004490.1| inner membrane protein [Escherichia coli 83972]
 gi|237703936|ref|ZP_04534417.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|238903362|ref|YP_002929158.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|253775116|ref|YP_003037947.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164186|ref|YP_003047296.1| inner membrane protein [Escherichia coli B str. REL606]
 gi|254796281|ref|YP_003081118.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
 gi|256019913|ref|ZP_05433778.1| conserved inner membrane protein [Shigella sp. D9]
 gi|260847092|ref|YP_003224870.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|260871013|ref|YP_003237415.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|261225380|ref|ZP_05939661.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255367|ref|ZP_05947900.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
 gi|291285673|ref|YP_003502491.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
 gi|293402886|ref|ZP_06646983.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1412]
 gi|293407981|ref|ZP_06651821.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417761|ref|ZP_06660383.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B185]
 gi|293476564|ref|ZP_06664972.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B088]
 gi|297519576|ref|ZP_06937962.1| Inner membrane protein yjgP [Escherichia coli OP50]
 gi|298378412|ref|ZP_06988296.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1302]
 gi|300818514|ref|ZP_07098723.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300821368|ref|ZP_07101516.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300899411|ref|ZP_07117666.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300906109|ref|ZP_07123828.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300923939|ref|ZP_07139949.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300950209|ref|ZP_07164150.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300957116|ref|ZP_07169357.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300972386|ref|ZP_07171919.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300988161|ref|ZP_07178581.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|301024383|ref|ZP_07188071.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|301050053|ref|ZP_07196965.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|301304686|ref|ZP_07210794.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301643391|ref|ZP_07243441.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|306815521|ref|ZP_07449670.1| Inner membrane protein yjgP [Escherichia coli NC101]
 gi|307140956|ref|ZP_07500312.1| Inner membrane protein yjgP [Escherichia coli H736]
 gi|309792902|ref|ZP_07687330.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|331645010|ref|ZP_08346127.1| inner membrane protein YjgP [Escherichia coli H736]
 gi|331650394|ref|ZP_08351466.1| inner membrane protein YjgP [Escherichia coli M605]
 gi|331656095|ref|ZP_08357083.1| inner membrane protein YjgP [Escherichia coli M718]
 gi|331660842|ref|ZP_08361774.1| inner membrane protein YjgP [Escherichia coli TA206]
 gi|331665930|ref|ZP_08366824.1| inner membrane protein YjgP [Escherichia coli TA143]
 gi|331671402|ref|ZP_08372200.1| inner membrane protein YjgP [Escherichia coli TA280]
 gi|331680399|ref|ZP_08381058.1| inner membrane protein YjgP [Escherichia coli H591]
 gi|331681281|ref|ZP_08381918.1| inner membrane protein YjgP [Escherichia coli H299]
 gi|332281053|ref|ZP_08393466.1| conserved hypothetical protein [Shigella sp. D9]
 gi|84027984|sp|P0AFA0|LPTF_ECO57 RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027985|sp|P0AF99|LPTF_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027986|sp|P0AF98|LPTF_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|84027987|sp|P0AFA1|LPTF_SHIFL RecName: Full=Lipopolysaccharide export system permease protein
           lptF
 gi|12519273|gb|AAG59460.1|AE005658_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111602|gb|AAN83784.1|AE016771_295 Hypothetical protein yjgP [Escherichia coli CFT073]
 gi|537103|gb|AAA97158.1| ORF_o366 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790712|gb|AAC77218.1| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|13364716|dbj|BAB38661.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|30043716|gb|AAP19435.1| hypothetical protein S4489 [Shigella flexneri 2a str. 2457T]
 gi|31323180|gb|AAP43524.1| YjgP [Escherichia coli B]
 gi|56384102|gb|AAN45647.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|81247897|gb|ABB68605.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|85677008|dbj|BAE78258.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|91075391|gb|ABE10272.1| hypothetical protein UTI89_C4868 [Escherichia coli UTI89]
 gi|110346212|gb|ABG72449.1| putative membrane protein YjgP [Escherichia coli 536]
 gi|115515729|gb|ABJ03804.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069416|gb|ABV08671.1| putative permease [Escherichia coli HS]
 gi|169756659|gb|ACA79358.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|169891535|gb|ACB05242.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519239|gb|ACB17417.1| putative permease [Escherichia coli SMS-3-5]
 gi|187770319|gb|EDU34163.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|188016154|gb|EDU54276.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|188999811|gb|EDU68797.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|189357793|gb|EDU76212.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|189364084|gb|EDU82503.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368987|gb|EDU87403.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|189374999|gb|EDU93415.1| putative permease, YjgP/YjgQ family [Escherichia coli O157:H7 str.
           EC869]
 gi|189379426|gb|EDU97842.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|190908875|gb|EDV68462.1| putative permease [Escherichia coli F11]
 gi|192930653|gb|EDV83259.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|192956891|gb|EDV87344.1| putative permease [Escherichia coli E110019]
 gi|208727053|gb|EDZ76654.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208734020|gb|EDZ82707.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208739237|gb|EDZ86919.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209157255|gb|ACI34688.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|209749448|gb|ACI73031.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749450|gb|ACI73032.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749452|gb|ACI73033.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209749456|gb|ACI73035.1| hypothetical protein ECs5238 [Escherichia coli]
 gi|209915017|dbj|BAG80091.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215267675|emb|CAS12133.1| conserved inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320650|gb|EEC29074.1| putative  permease [Escherichia coli O157:H7 str. TW14588]
 gi|218354741|emb|CAV01804.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218363577|emb|CAR01234.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218368188|emb|CAR05996.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218434964|emb|CAR15905.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|222036033|emb|CAP78778.1| Inner membrane protein yjgP [Escherichia coli LF82]
 gi|226901848|gb|EEH88107.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836258|gb|EEJ46724.1| inner membrane protein [Escherichia coli 83972]
 gi|238860249|gb|ACR62247.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|242379781|emb|CAQ34608.1| LptF, subunit of LptABCFG ABC transporter [Escherichia coli
           BL21(DE3)]
 gi|253326160|gb|ACT30762.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976089|gb|ACT41760.1| conserved inner membrane protein [Escherichia coli B str. REL606]
 gi|253980245|gb|ACT45915.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254595681|gb|ACT75042.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257762239|dbj|BAI33736.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|257767369|dbj|BAI38864.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|281181359|dbj|BAI57689.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|281603540|gb|ADA76524.1| hypothetical protein SFxv_4611 [Shigella flexneri 2002017]
 gi|290765546|gb|ADD59507.1| Inner membrane protein yjgP [Escherichia coli O55:H7 str. CB9615]
 gi|291321017|gb|EFE60459.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B088]
 gi|291429801|gb|EFF02815.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1412]
 gi|291430479|gb|EFF03477.1| lipopolysaccharide export system permease lptF [Escherichia coli
           B185]
 gi|291472232|gb|EFF14714.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294490862|gb|ADE89618.1| putative permease [Escherichia coli IHE3034]
 gi|298280746|gb|EFI22247.1| lipopolysaccharide export system permease lptF [Escherichia coli
           FVEC1302]
 gi|300298211|gb|EFJ54596.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|300305971|gb|EFJ60491.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|300316134|gb|EFJ65918.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300356989|gb|EFJ72859.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300396609|gb|EFJ80147.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|300402052|gb|EFJ85590.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300410965|gb|EFJ94503.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300419817|gb|EFK03128.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300450449|gb|EFK14069.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300526257|gb|EFK47326.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300528918|gb|EFK49980.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300840036|gb|EFK67796.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301078221|gb|EFK93027.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|305851183|gb|EFM51638.1| Inner membrane protein yjgP [Escherichia coli NC101]
 gi|307556431|gb|ADN49206.1| putative membrane protein YjgP [Escherichia coli ABU 83972]
 gi|307629337|gb|ADN73641.1| Inner membrane protein yjgP [Escherichia coli UM146]
 gi|308123188|gb|EFO60450.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|309704765|emb|CBJ04116.1| putative permease [Escherichia coli ETEC H10407]
 gi|312948914|gb|ADR29741.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|315255620|gb|EFU35588.1| putative inner membrane protein [Escherichia coli MS 85-1]
 gi|315288386|gb|EFU47784.1| putative inner membrane protein [Escherichia coli MS 110-3]
 gi|315293628|gb|EFU52980.1| putative inner membrane protein [Escherichia coli MS 153-1]
 gi|315298978|gb|EFU58232.1| putative inner membrane protein [Escherichia coli MS 16-3]
 gi|320639018|gb|EFX08664.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H7 str. G5101]
 gi|320644388|gb|EFX13453.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H- str. 493-89]
 gi|320649705|gb|EFX18229.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H- str. H 2687]
 gi|320655102|gb|EFX23063.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660608|gb|EFX28069.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665535|gb|EFX32581.1| lipopolysaccharide ABC transporter permease LptF [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323380352|gb|ADX52620.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
 gi|323935383|gb|EGB31731.1| inner membrane protein yjgP [Escherichia coli E1520]
 gi|323950670|gb|EGB46548.1| inner membrane protein yjgP [Escherichia coli H252]
 gi|323955547|gb|EGB51311.1| inner membrane protein yjgP [Escherichia coli H263]
 gi|323965650|gb|EGB61104.1| inner membrane protein yjgP [Escherichia coli M863]
 gi|323975396|gb|EGB70497.1| inner membrane protein yjgP [Escherichia coli TW10509]
 gi|324013725|gb|EGB82944.1| putative inner membrane protein [Escherichia coli MS 60-1]
 gi|324019238|gb|EGB88457.1| putative inner membrane protein [Escherichia coli MS 117-3]
 gi|324118822|gb|EGC12714.1| inner membrane protein yjgP [Escherichia coli E1167]
 gi|331035985|gb|EGI08223.1| inner membrane protein YjgP [Escherichia coli H736]
 gi|331040788|gb|EGI12946.1| inner membrane protein YjgP [Escherichia coli M605]
 gi|331046449|gb|EGI18539.1| inner membrane protein YjgP [Escherichia coli M718]
 gi|331051884|gb|EGI23923.1| inner membrane protein YjgP [Escherichia coli TA206]
 gi|331056981|gb|EGI28975.1| inner membrane protein YjgP [Escherichia coli TA143]
 gi|331071247|gb|EGI42604.1| inner membrane protein YjgP [Escherichia coli TA280]
 gi|331071862|gb|EGI43198.1| inner membrane protein YjgP [Escherichia coli H591]
 gi|331081502|gb|EGI52663.1| inner membrane protein YjgP [Escherichia coli H299]
 gi|332103405|gb|EGJ06751.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 366

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|157147734|ref|YP_001455052.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
 gi|157084939|gb|ABV14617.1| hypothetical protein CKO_03538 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 122/354 (34%), Gaps = 17/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G SR  L+K  + LA+   +   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSRAVLVKAAMVLALFTGVVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   + N            R+E H R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWQTDTN----------RARAELHWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             RQ + +  +   L          S   +  +     +  ++       ++ +
Sbjct: 290 NPRQGRVLSMLPAMLLYLLFFLLQTSLKSNGGKGKLDPVIWMWAVNLIYLALAV 343


>gi|91788272|ref|YP_549224.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
 gi|91697497|gb|ABE44326.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
          Length = 376

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 119/335 (35%), Gaps = 21/335 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V I   I +++ +   S  + S   ++    Y     LP
Sbjct: 2   LFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +   + L+ M R++E+++   +G      +KP+   A  + + + +    + 
Sbjct: 62  TILTLSLFIAMVSTLSRMYRDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNTLQGIFIVDSRD 180
           P      K +  +       + +    F        +     +     +   +FI  + +
Sbjct: 122 PWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFFIDRDLASEQSSSNVFIA-ATE 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
                +  A+SG I+   D Q ++L  G+          + I  F+ Y  +T +SA    
Sbjct: 181 KGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +A   +   L+           E   +   E   RL   +  V F ++++  A    
Sbjct: 241 RTPEAKLLSTRSLI----------KEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNP 290

Query: 298 LVRQRKKIHPIFISLSIS-----FGVFWGFSYIIH 327
              +   +  + ++  +       G  W F  +I 
Sbjct: 291 RGGRSGNMIFVLLTFVVYNNLVNLGQSWIFVGLIS 325


>gi|218245029|ref|YP_002370400.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|218165507|gb|ACK64244.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
          Length = 395

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 131/375 (34%), Gaps = 24/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +   F+     +  +   +  +    N V  S   L   L+I    +P 
Sbjct: 22  LSLMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPE 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+ +   G S   LI P L L++++S   F+   
Sbjct: 82  FTAYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNE 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLYI-------KISKYNP 166
           ++ P        +  K        + ++++F        L +   I          +++ 
Sbjct: 142 LVVPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDG 201

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            N ++ + I++      +KI  + S + + ++      +G +++ +P +       FK  
Sbjct: 202 EN-MKALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHR 260

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY---RPELLETYRSEFHKRLTQWLFPV 283
                 A     +   N   ++ +               + L T++    ++++     V
Sbjct: 261 QFPLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICV 320

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YL 341
           +FGLI  V   +   + +        I +      ++   ++I  +       P +  +L
Sbjct: 321 VFGLIGSVLGARPQQMSRSTSFGLSVIII----FTYYVLGFLIGSLGLVGAISPFMAAWL 376

Query: 342 FLFCISSIFLLMIKK 356
             F   ++   ++ +
Sbjct: 377 PNFIGLAVGGWLLYR 391


>gi|323960302|gb|EGB55943.1| inner membrane protein yjgP [Escherichia coli H489]
          Length = 366

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|299065988|emb|CBJ37169.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CMR15]
          Length = 372

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 127/361 (35%), Gaps = 20/361 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +   +  A++G           ++L+ G  +  +P   D  I++F  Y ++  +    +
Sbjct: 182 DKIG-VALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-D 294
              L    +  + LL NP P N             E   R+   L  + F LI+I  A  
Sbjct: 241 DANLPTKSRPTTELLSNPTPENLG-----------ELVWRIGLPLLALNFVLIAIPLAYV 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              L R    I  + I L+ S  +    +++             ++L  F  +++     
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAALLFRFR 349

Query: 355 K 355
            
Sbjct: 350 H 350


>gi|297182283|gb|ADI18452.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF4000_13G19]
          Length = 354

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 129/350 (36%), Gaps = 26/350 (7%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++    +V +    + ++ +   ++   + + L  +  + +P  L M+ P    +    V
Sbjct: 4   VLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRLPEFLQMILPLSLYIAILLV 63

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L  M+ + E++++   G     +++ ++  A++    + +    + P+  + + ++  + 
Sbjct: 64  LGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIFEEQ 123

Query: 137 QLALTFSYLEENLFFRLDDD---LYIKISKYN-PNNTLQGIFIVDSR----DTQTHKIYY 188
           +       L    F    DD           N     L+ +F+ D+     +       +
Sbjct: 124 KGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLENVFVADASFSSEEAGRLLTVW 183

Query: 189 AQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           A+SG++        + L DG  ++  P   D   + F+   ++  S  SS+   +   ++
Sbjct: 184 ARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVRGRS 243

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L++          +      +E   R +  L   I  L ++     R   RQ + + 
Sbjct: 244 TLDLID----------DGGNQAMAELAWRWSLVLTVPIMCLAAVP--LSRVNPRQGRFLR 291

Query: 307 PIFISLSISFGVFWGFSY----IIHKIEQNPYYIPILYLFLFCISSIFLL 352
            I   L     V    +           + P+Y  ++++ L    ++F+L
Sbjct: 292 MIPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFML 341


>gi|113868946|ref|YP_727435.1| permease [Ralstonia eutropha H16]
 gi|113527722|emb|CAJ94067.1| predicted permease [Ralstonia eutropha H16]
          Length = 375

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 128/366 (34%), Gaps = 23/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +  + R +  +     L ++       +++ + + +S   S N +L + G      L 
Sbjct: 2   ILQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAASGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRELVKPVLQFAAPFIVLALLLGMFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F      +  + I   + +    + +F+  + +
Sbjct: 122 PWANQQSALFRDRFEQRGVMSMIAAGRFIEPAKANYVLFIEGIDADMKHARNVFVA-NSE 180

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
                +  A  G  +      + +++ +G  +   P   D  I++F+ Y ++ ++ A  S
Sbjct: 181 ADKIGVALAHQGKFETMPNGDRLVVMENGRRYSGMPGQIDYRIVEFERYAVKVDNKAPES 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              L    ++   L+ NP   N             E   R++  +    F +I+I  A  
Sbjct: 241 EAKLPPKSRDTIELIRNPTRENLG-----------ELIWRISLPILAFNFVMIAIPLA-- 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMI 354
             +  +  +  P+  ++ I        +     +      +    +     +    LL+ 
Sbjct: 288 -YVNPRLGRYTPLVFAVLIYLTYSNLINLTQSWVRSGAIPFWLAWWPIHLAVFLGALLLF 346

Query: 355 KKKYTK 360
           + +  +
Sbjct: 347 RYRQNR 352


>gi|120611822|ref|YP_971500.1| permease [Acidovorax citrulli AAC00-1]
 gi|120590286|gb|ABM33726.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
          Length = 365

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 125/322 (38%), Gaps = 16/322 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L  M R +E++I   +G   + L+ P+L  A  + + +     +I 
Sbjct: 62  TILTLSLFVAVVGTLARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P     I+QL  + +       +    F    +      I +  P+N     +FI  + +
Sbjct: 122 PWANQQIQQLKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIASN-E 180

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+S  ++   +++  +L+DG+    S     + + +F  Y  +   A SS+ 
Sbjct: 181 HGRETVTSARSARLETRGNQRMALLSDGQRLETSLDKPGLKVSEFSEYGTRIGGAASSSS 240

Query: 239 VLKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              A   ++ + L     ++P         +R+E   R       + F ++ +  A    
Sbjct: 241 DDGAVKTRSTAQLFA--SSDP--------VFRAELGWRFGLAFAALNFVVLGLAVASANP 290

Query: 298 LVRQRKKIHPIFISLSISFGVF 319
              +   +     +  + + + 
Sbjct: 291 RAARSTSLVFALFAFVVYYNLM 312


>gi|189485654|ref|YP_001956595.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287613|dbj|BAG14134.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 384

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 136/386 (35%), Gaps = 37/386 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K   LY ++    SFL+       +  +  + + ++L  S   S  ++LK+  + +P +
Sbjct: 2   IKKLHLYTIKESFGSFLLGVAVFSILFILDYVFELVDLFLSKGVSFFLVLKLFAFALPNI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P             ++ + E+  + ++G +  TL  P++ L  ++S FL    + 
Sbjct: 62  LRLAIPMSVLFGILIAYGKLSEDNEITAMKSSGVNYRTLSLPIIILVCIISSFLLFFNHF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIV--- 176
           + P   S    L  +           E     L +   +  +K N  NNTL  + I    
Sbjct: 122 LSPAMNSNFVNLYREILTKKPLIKFTEKTTIELGE-YRLYANKVNRKNNTLYEVSIYKFE 180

Query: 177 ----------DSRDTQTHKI---------YYAQSGSIDL--DRQAIILNDGEVHRKS-PI 214
                     D +  +               A S  +    +     + DG   + +   
Sbjct: 181 NKDDYCYGYNDEKSDKKSLFLQNNSKAWRIAASSAKVKSYQNGTQFFIYDGYWQKANFSD 240

Query: 215 SKDISIMKFKSYTLQTESANS-STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
             +++ M FKSY     S+       L  ++++   +L         +         EF 
Sbjct: 241 INNMTHMTFKSYCFFIPSSEVMKEQTLSMSEKSSPEILK-TIKTCKEQDIPFTANEIEFW 299

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
            R    L P+ F LI++          +  K     +SLSI    +      +   E+  
Sbjct: 300 IRWIYALAPISFVLIALPIGIMAG---KDGKTIGFGMSLSIILVYYMLLILALILSEKE- 355

Query: 334 YYIP---ILYLFLFCISSIFLLMIKK 356
            Y+P   I++L    +++  + +  K
Sbjct: 356 -YVPANLIMWLPNITVTAAGICLFTK 380


>gi|302338545|ref|YP_003803751.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635730|gb|ADK81157.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 381

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 132/372 (35%), Gaps = 20/372 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + Y+L+    SF ++ +F  FI +V Q+L     V S    +  +L +  Y +P +L
Sbjct: 11  RIADAYLLKEFFFSFCIAFIFFFFIFFVNQLLLLAEEVLSKRVGVTKVLLLILYSLPAIL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +   + + E+      G S + L  PV+ L ++LS   F S +++
Sbjct: 71  AFTFPFSALLGTVMAIGRFSSDNEITAFRALGVSHLRLFFPVMLLGLILSGISFFSNDVL 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      +L      +     LE     R  D   + ++    +  +  + I+D  + 
Sbjct: 131 LPRGTVQFGRLYRDILYSNPALELEPYAVRRYKD--TVLVTGAISDREISDLVILDHDED 188

Query: 182 QTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKDISIMKFKS--YTLQTESAN 234
           Q  ++  A+   ++ D +     ++ L +   H       D       +  Y +   S  
Sbjct: 189 QNERMLSAKRAYLEQDEKENGVISLRLEEVFGHTAKKREGDFDYFTADTMEYNILLSSFT 248

Query: 235 SSTIVLKANDQNLSFLL---------NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            S   L   + + + L               N       L+ Y+ EF+K+L   L    F
Sbjct: 249 YSINNLTPREMSTAALYGEIQTMEAKKKEDQNKKRFDRTLQLYKIEFYKKLAIPLGCFTF 308

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
              +  A       R  + +  +    + +F            +         ++     
Sbjct: 309 MFFAFPAGLLPK--RSGRWVGFVLGLFAAAFYWMLLIVGQTLGVRFQVSAALAMWFPNIF 366

Query: 346 ISSIFLLMIKKK 357
           I+ I LL+   +
Sbjct: 367 IAFIGLLIYLSR 378


>gi|237741965|ref|ZP_04572446.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845305|ref|ZP_05550763.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|229429613|gb|EEO39825.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718864|gb|EEU32419.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 359

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 13/346 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K + AK         L+E  F    D+  I + K + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGAKIAYENPVFQLKEKTFIDNLDEYSIYVDKVSSDGKAKNIIAFEKPE 180

Query: 181 TQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES--ANSS 236
            +     +   +         AII+ + +        K   I  F    +   +   + +
Sbjct: 181 DKNKFPMVLTGEEAFWK--DSAIIVKESQFVSFDETGKKNLIGTFDEKKVVLTAYFQDLN 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +      +++ L+             +  Y+ E  ++L      V   +I        
Sbjct: 239 IKIKDVEALSITDLIKGIKKIEATE---VIKYKIEIFRKLALVFSTVPLAVIGFCL---- 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +L   R      FI   I    +  F  I   +       P +  +
Sbjct: 292 SLGHHRISKKYSFILAMIIIFAYIIFLNIGIVMASAGKLNPFIATW 337


>gi|294807984|ref|ZP_06766761.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294444797|gb|EFG13487.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 638

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 10  IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 70  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I   +
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMK 189

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +  +I YA SG ++   D+Q + L+
Sbjct: 190 DGFEKARIIYADSGRLEMTADKQHLWLH 217



 Score = 35.7 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +  +++E+HK++T  L  ++F  I    A    ++R+     P+ +S+ + F +++    
Sbjct: 372 IRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDN 427

Query: 325 IIHKIEQNPYYIPILYLFLFCISSI 349
             +K+ ++  +I  +++ ++  S++
Sbjct: 428 TGYKMARDGKWI--VWMGMWTSSAV 450


>gi|194426540|ref|ZP_03059094.1| putative permease [Escherichia coli B171]
 gi|300928087|ref|ZP_07143635.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|194415279|gb|EDX31547.1| putative permease [Escherichia coli B171]
 gi|300463884|gb|EFK27377.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|323940179|gb|EGB36373.1| inner membrane protein yjgP [Escherichia coli E482]
          Length = 366

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   I+     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAINVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|218702964|ref|YP_002410593.1| hypothetical protein ECIAI39_4734 [Escherichia coli IAI39]
 gi|218372950|emb|CAR20831.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
          Length = 366

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 134/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +     S    N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDSDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|82779327|ref|YP_405676.1| hypothetical protein SDY_4285 [Shigella dysenteriae Sd197]
 gi|81243475|gb|ABB64185.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 366

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAIILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|257058053|ref|YP_003135941.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
 gi|256588219|gb|ACU99105.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
          Length = 395

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 132/375 (35%), Gaps = 24/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +   F+     +  +   +  +    N V  S   L   L+I    +P 
Sbjct: 22  LSLMDRYIGGQLITPFIFGVGLVSSLGVAIGYLSDLGNKVVDSNLPLIKALEILLLKVPE 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+ +   G S   LI P L L++++S   F+   
Sbjct: 82  FTAYALPISVMLTTLLTYGRLSSDSELIALRACGVSLSRLIAPALALSLVVSGITFVFNE 141

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLYI-------KISKYNP 166
           ++ P        +  K        + ++++F        L +   I          +++ 
Sbjct: 142 LVVPTANYQATSILVKYLNEEHRFWQQKDIFYPDYEEISLPNGETIKRLKHLFYAEEFDG 201

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
            N ++ + I++      +KI  + S + + ++      +G +++ +P +       FK  
Sbjct: 202 EN-MKALTILEWIGDSLNKIVISDSATWNANQNTWDFFNGNIYKIAPDASYKDTFGFKHR 260

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY---RPELLETYRSEFHKRLTQWLFPV 283
            L    A     +   N   ++ +               + L T++    ++++     V
Sbjct: 261 QLPLSKAPFEFALQGRNPYEMNIIQAQEYTKLLKMIGDQKNLRTFQVRIQQKMSFPFICV 320

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YL 341
           +FGLI  V   +   + +        I +      ++   ++I  +       P +  +L
Sbjct: 321 VFGLIGSVLGARPQQMSRSTSFGLSVIII----FTYYVLGFLIGSLGLVGAISPFMAAWL 376

Query: 342 FLFCISSIFLLMIKK 356
             F   ++   ++ +
Sbjct: 377 PNFIGLAVGGWLLYR 391


>gi|194437844|ref|ZP_03069939.1| putative permease [Escherichia coli 101-1]
 gi|256025197|ref|ZP_05439062.1| hypothetical protein E4_17633 [Escherichia sp. 4_1_40B]
 gi|260858413|ref|YP_003232304.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|301325194|ref|ZP_07218718.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|331671169|ref|ZP_08372002.1| inner membrane protein YjgP [Escherichia coli TA271]
 gi|194423340|gb|EDX39332.1| putative permease [Escherichia coli 101-1]
 gi|257757062|dbj|BAI28564.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|300847955|gb|EFK75715.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|323945994|gb|EGB42032.1| inner membrane protein yjgP [Escherichia coli H120]
 gi|323970485|gb|EGB65744.1| inner membrane protein yjgP [Escherichia coli TA007]
 gi|331061758|gb|EGI33684.1| inner membrane protein YjgP [Escherichia coli TA271]
          Length = 366

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMCTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|330504705|ref|YP_004381574.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
 gi|328918991|gb|AEB59822.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
          Length = 374

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 129/357 (36%), Gaps = 27/357 (7%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++ I    + ++ +   +       +L  I GY IP  L ++ 
Sbjct: 5   RYLSREVLVTLSAVSAVLLVIIMSGRFIKYLAQAAQGVLDPGVLFLIMGYRIPGFLQLIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +  ++E+ ++  TG S+  L    +  A+++++ +      + P+ 
Sbjct: 65  PLGLFLGFLLAYGRLYLDSEMTVLSATGVSQQRLTAYSMAPALIVALLVGWLSLGLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIV------D 177
            +++ ++ ++         L    F  L D        + +P+ + L+G+F+       D
Sbjct: 125 VASVARILSEQDALTELDTLVPGRFQSLRDGSRVTYSQELSPDRSELRGVFMSEKRFSTD 184

Query: 178 SRDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            R  +   +  A+SG     D   + +IL +G  +   P   D   +++ +Y +      
Sbjct: 185 GRSERGITVLVAESGRQEIQDDGSRYLILENGYRYDGEPGEADYRAIQYDTYGVLLPKPE 244

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +        LL    ++P          ++E   RL+  L   I  L+++    
Sbjct: 245 VAIEASEREATPTRELLG--SSDP--------RMQAELQWRLSLPLLVFIVTLLAVP--L 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +   RQ + +  +       +  + G                 L   L+ +  IFL
Sbjct: 293 SKVNPRQGRFLKLLPAIF--LYMAYLGLLIAARGALDKGRLPAAL--GLWWVHGIFL 345


>gi|238793061|ref|ZP_04636690.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
 gi|238727661|gb|EEQ19186.1| Inner membrane protein yjgP [Yersinia intermedia ATCC 29909]
          Length = 364

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 129/365 (35%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALFTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I           +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVT-GREFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A   ++  L   N  +           R+EFH RLT  +  +I  L+ +      
Sbjct: 241 QNNNVAEQMSMKQLWRANQPDT----------RAEFHWRLTLIVSVIIMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P +++++   + + + +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPFIWMWIVNGAYLAVAV 343

Query: 354 IKKKY 358
           +   +
Sbjct: 344 VLNLW 348


>gi|270157967|ref|ZP_06186624.1| putative permease [Legionella longbeachae D-4968]
 gi|289163766|ref|YP_003453904.1| Predicted membrane protein [Legionella longbeachae NSW150]
 gi|269989992|gb|EEZ96246.1| putative permease [Legionella longbeachae D-4968]
 gi|288856939|emb|CBJ10753.1| Predicted membrane protein [Legionella longbeachae NSW150]
          Length = 359

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 131/370 (35%), Gaps = 24/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  + +     +V I    Q++Q +N  +S +    I++K+    +PT+L 
Sbjct: 2   IIFRYLAKEVLITLISLTSILVLIFLSNQLIQYLNRAASGSIPGVIIMKLMMLELPTLLC 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L+K  L +A ++   + I      
Sbjct: 62  LLIPLGFYIAMLLAYGRLYAESEMTVLRACGYGPNKLLKHSLIMATVVGFIVAIVMIWGS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVDS-- 178
           P       +L     +      +    F  +++      +   + ++T  + +F+     
Sbjct: 122 PLIYIERAKLLRSTGIQTLVQTIMPGRFHAINEGKEVFYVQSMSRDHTKAEQVFLAKRTT 181

Query: 179 -RDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             D     + +A     + D +     IIL +G+ ++  P   D  I +F  Y  +    
Sbjct: 182 VDDKTRWDVLWADQAFAETDPKTGEDYIILQNGKEYQGVPGHADYQIAEFGEYKARLPHP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                V+K ++   +     +  N            +E   R +  +      LI++   
Sbjct: 242 -----VVKISEDFRTI----STANLFPFNNTDRAKAAELQWRFSVPIMVFALTLIAV--- 289

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILYLFLFCISSIFL 351
               +  +  K   +  ++ I + V+    +I      +        L+    CI +  L
Sbjct: 290 PLSRINPRSGKFAKLLPAI-IIYIVYANLLFIARDAMVSGKMPQWLGLWWVHLCIIAFGL 348

Query: 352 LMIKKKYTKI 361
            +I +   K+
Sbjct: 349 WLIWRNQAKL 358


>gi|160885006|ref|ZP_02066009.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
 gi|156109356|gb|EDO11101.1| hypothetical protein BACOVA_03003 [Bacteroides ovatus ATCC 8483]
          Length = 632

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 64  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I   +
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMK 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +  +I YA SG ++   D+Q + L+
Sbjct: 184 DGFEKARIIYADSGRLEMTADKQHLWLH 211


>gi|237712765|ref|ZP_04543246.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409745|ref|ZP_06086283.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229447177|gb|EEO52968.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352398|gb|EEZ01500.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084616|emb|CBK66139.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
          Length = 632

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 64  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I   +
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMK 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +  +I YA SG ++   D+Q + L+
Sbjct: 184 DGFEKARIIYADSGRLEMTADKQHLWLH 211


>gi|332880892|ref|ZP_08448562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332681066|gb|EGJ53993.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 633

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++ +     F+ +    +FI  +  + + ++ +     +L++L     Y   T+
Sbjct: 4   IKKIDIFVFKAYSLLFVGTFFICLFIFMMQFMWRYVDELIGKGLTLDVLAHFFYYAGLTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL +   G   I +++P++   ILL I  F  +N+
Sbjct: 64  IPMSLPLAILLASLITFGNLGERFELLSMKAAGIPLIRILQPIIIFNILLCIGSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
             P+ +     L    +       + E +F+       I + K    N  L G+ I  + 
Sbjct: 124 TGPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVEKKGKENGMLYGVMIYSTT 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDI 218
           D  +  +I  A S  +          + +  GE  R      ++
Sbjct: 184 DGYEDAQIVLADSAELKTTADEKHLMLTMYAGERFRNMQAQGNM 227



 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP--ELLETYRSEFHKRL 276
             + F +   Q   +   +I+  A  ++              +   +   T+  E+HK+ 
Sbjct: 317 QTLNFDTLYSQLTVSQQQSILRNAMQKSTVATNEYEFRGLISKDIDQSTRTHWVEWHKKF 376

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           T  L  + F  I    A   A++R+     P+ IS++I F  ++  +    K+ ++  ++
Sbjct: 377 TLSLACLFFFFIG---APLGAIIRKGGLGVPVVISVTI-FIFYYIINVSGEKMAKSGEWV 432

Query: 337 PIL--YLFLFCISSIFLLMIKK 356
           P    +L    +  I + +  K
Sbjct: 433 PWFGEWLSSMVLCPIGIFLTYK 454


>gi|299147702|ref|ZP_07040765.1| putative permease [Bacteroides sp. 3_1_23]
 gi|298513885|gb|EFI37771.1| putative permease [Bacteroides sp. 3_1_23]
          Length = 638

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 10  IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 70  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I + +
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMK 189

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +   I YA SG ++   D+Q + L+
Sbjct: 190 DGFENAHIIYADSGRLEMTADKQHLWLH 217



 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +  +++E+HK++T  L  ++F  I    A    ++R+     P+ +S+ + F +++    
Sbjct: 372 IRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDN 427

Query: 325 IIHKIEQNPYYIPILYLFLFCISSI 349
             +K+ ++  +I  +++ ++  S++
Sbjct: 428 TGYKMARDGKWI--VWMGMWTSSAV 450


>gi|239948137|ref|ZP_04699890.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922413|gb|EER22437.1| putative permease [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 233

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 102/237 (43%), Gaps = 12/237 (5%)

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
           +K   +  +     S +EE  F ++  D+ + I K +  N + G+ I D+R+     + +
Sbjct: 1   LKSRLSFIKNNYISSMIEEKTFNKVTKDITVFIDKKSAGNIMNGVIIFDNRNADNPSVVF 60

Query: 189 AQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS-----STIVLK 241
           A SG+++   +     LN G       ++ +++ + F S  ++ ++ N      +    +
Sbjct: 61  AGSGTLNIYDNSPIFELNKGIRQEYD-VNGNLTQLTFDSLMIKLQNDNPLVSQRTKHNKE 119

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
           AN+  +S LL P P++     ++     +E H+R+   L+  +   +++    +    ++
Sbjct: 120 ANEYYISELLAP-PHDLAITKKI--KLIAEAHQRIIWPLYNFVLPFLALAVFLRYPYSKK 176

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +  +F +L++       F  + +   +N  +I   Y  L     I L +  +K 
Sbjct: 177 TTFMPVLFSALTVLLVTSIHF-ILQNFASKNLDFIFACYSNLVIALMIGLYLFVRKR 232


>gi|238761816|ref|ZP_04622790.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
 gi|238699930|gb|EEP92673.1| Inner membrane protein yjgP [Yersinia kristensenii ATCC 33638]
          Length = 364

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 129/365 (35%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALITSALASVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I           +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVT-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGHMIERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A    +  L + N  +           R+EFH RLT  +  +I  L+ +      
Sbjct: 241 QNNNVAEQMTMKQLWDSNKPDA----------RAEFHWRLTLIVSVIIMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++++      + + +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASGGKLDPLIWMWAVNGVYLAVAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|19704366|ref|NP_603928.1| hypothetical protein FN1031 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327426|ref|ZP_06869973.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|19714618|gb|AAL95227.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155439|gb|EFG96209.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 359

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 119/329 (36%), Gaps = 6/329 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  SIF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRDILKPILAIAIGASIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+    +K +  K         L+E  F    D+  I + + + +   + I   +  +
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDEYSIYVDEVSSDGKAKNIIAFEKPE 180

Query: 181 TQT--HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +     +   +         AII+ + +        K   +  F    +   +     +
Sbjct: 181 DKNKFPMVLTGEEAFWK--DSAIIIKESQFVSFDEKGKKNLVGTFDEKRVVLTAY-FQDL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADKRA 297
            +K  D     +++            +  Y+ E  ++L      V   +I   ++     
Sbjct: 238 NIKIKDVEALSIIDLIKGLKKVEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLGHHR 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYII 326
           + ++   +  + I  +    +  G     
Sbjct: 298 ISKKYSFVLAMIIVFAYIIFLNIGIVMAT 326


>gi|17547135|ref|NP_520537.1| hypothetical protein RSc2416 [Ralstonia solanacearum GMI1000]
 gi|17429437|emb|CAD16123.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 372

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 124/359 (34%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEASPNDVLLLIGLAALGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++    G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTAGLSLTDFIRPVLRFSLPFVVLVGLLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDAGMKHARNLFVANAEQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +   +  A++G           ++L+ G  +  +P   D  I++F  Y ++  +    +
Sbjct: 182 DKIG-VALAKTGEFKAGPNGDRYVVLDKGRRYEGTPGQLDYRIVEFDRYGVKVANKPPQA 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-D 294
              L    +  + LL NP P N             E   R+   L  + F LI+I  A  
Sbjct: 241 DANLPTKSRPTTELLSNPTPENMG-----------ELVWRIGLPLLALNFVLIAIPLAYV 289

Query: 295 KRALVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              L R    I  + I L+ S             K+     + PI      C   +F  
Sbjct: 290 NPRLGRYTPMIFAVLIYLTYSNLLNLSQAWVAQGKMSAMLAWWPIHLAAFVCAGLLFRF 348


>gi|123969132|ref|YP_001009990.1| putative permease [Prochlorococcus marinus str. AS9601]
 gi|123199242|gb|ABM70883.1| possible permease [Prochlorococcus marinus str. AS9601]
          Length = 401

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 132/379 (34%), Gaps = 29/379 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    L +      I+  V  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIISPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEEN-----LFFRLDDDL---------------YIKI 161
            PK            +  +  S+ EE      +F R    +               +I  
Sbjct: 145 VPKSNKLA---ETTLRAGIGSSFSEEKGKENIMFSRYGSRINSETKKPTKNNSKLTHIFY 201

Query: 162 SKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
           S++  N  ++ + ++D       +I  A SG  D    + I ++G +       +  +I 
Sbjct: 202 SQWYENKIMKNVTVLDFSREDFQQILKANSGRFDKKSSSWIFSNGSIVSIDSGGQTTNI- 260

Query: 222 KFKSYTLQTESAN--SSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQ 278
           +FK Y           + +   AN+  L   +            + +   +    ++ T 
Sbjct: 261 QFKEYKYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNLKEVRRMKVRIQEKFTL 320

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               ++FGLI   +   ++ +R  K        + I       F +    ++     I  
Sbjct: 321 PFACLVFGLIG-SSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPPIFA 379

Query: 339 LYLFLFCISSIFLLMIKKK 357
            +L +       + +++K 
Sbjct: 380 AWLPVLISLGGGIYLLRKS 398


>gi|58040480|ref|YP_192444.1| hypothetical protein GOX2052 [Gluconobacter oxydans 621H]
 gi|58002894|gb|AAW61788.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 393

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 133/365 (36%), Gaps = 18/365 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L  +   F ++ L ++    + ++L   + ++S+  SL   + +   L+P    
Sbjct: 16  ILDRYLLTQMAPPFAIALLAMLIALLLERLLSLFDYLASAGSSLGTCIALLTDLLPHYFG 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +     +  M+ N E+  +     S + + +P + + +LL          I+
Sbjct: 76  IALPAALCIAVFLTIRGMSDNNEIDALQAGRVSLMRISRPFMIVGLLLGAASVFLYGYIQ 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDT 181
           P  R   +     A+      +L+  +F        +     +   T L+ +FI +    
Sbjct: 136 PVARYDYRAGFYFAEHTGWAPHLQAGMFASTSSKAVMTADSVSHAGTRLRRVFIREVNAN 195

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHR---KSPISKDISIMKFKSYTLQTESAN 234
               I  A++G++ +  +     + L +GE+     ++      ++  F+      +  N
Sbjct: 196 GVAHIITARTGALTISEKTRSTRLDLWNGEIVDDPFQATKPHKPTVTHFEHVVRVIDRPN 255

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRLTQWLFPVIFGLISIVA 292
             T             L    ++  Y    +E  T R+E   R+ +    +    I  +A
Sbjct: 256 KETSFRSRGADERELTLFELAHDLRYGLPGIEYRTLRAEMDFRMAR---AIAIPFIPPLA 312

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILYL--FLFCISS 348
                  R+RK +  + I++++    F       H +           +++   LFC+  
Sbjct: 313 VALAISARRRKSVWGL-IAVAVILIGFDQTLMFGHSLASTGRLPIWLAIWVPELLFCVGC 371

Query: 349 IFLLM 353
           +  L+
Sbjct: 372 LAALL 376


>gi|188495933|ref|ZP_03003203.1| putative permease [Escherichia coli 53638]
 gi|188491132|gb|EDU66235.1| putative permease [Escherichia coli 53638]
          Length = 366

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 133/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGYQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|74314740|ref|YP_313159.1| hypothetical protein SSON_4446 [Shigella sonnei Ss046]
 gi|254037284|ref|ZP_04871361.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300916357|ref|ZP_07133099.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300935933|ref|ZP_07150886.1| putative inner membrane protein [Escherichia coli MS 21-1]
 gi|73858217|gb|AAZ90924.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|226840390|gb|EEH72392.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|284924431|emb|CBG37556.1| putative permease [Escherichia coli 042]
 gi|300416317|gb|EFJ99627.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300458869|gb|EFK22362.1| putative inner membrane protein [Escherichia coli MS 21-1]
          Length = 366

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 132/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y           
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVVL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E + R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|218551558|ref|YP_002385350.1| hypothetical protein EFER_4343 [Escherichia fergusonii ATCC 35469]
 gi|218359100|emb|CAQ91761.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324112114|gb|EGC06092.1| inner membrane protein yjgP [Escherichia fergusonii B253]
          Length = 366

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 123/356 (34%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+   I   I+     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKGVLVKAAMILALFTGIVAAINVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSAVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  +++ L N + +            R+E + RLT      +  L+ +       
Sbjct: 242 DPNDTDQMDMTTLWNTDSD----------RARAELNWRLTLIFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +  +   L          S   +  +        ++       ++ + +
Sbjct: 290 NPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIAL 345


>gi|315922632|ref|ZP_07918872.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696507|gb|EFS33342.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 632

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 64  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I + +
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMK 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +   I YA SG ++   D+Q + L+
Sbjct: 184 DGFENAHIIYADSGRLEMTADKQHLWLH 211


>gi|90021020|ref|YP_526847.1| queuine tRNA-ribosyltransferase [Saccharophagus degradans 2-40]
 gi|89950620|gb|ABD80635.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
          Length = 360

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 129/351 (36%), Gaps = 21/351 (5%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
            S L   L ++ I    + +  +   ++      +LL +  Y +P  L ++ P    +  
Sbjct: 1   MSMLAVSLILLLIIISARFVTYLAEAAAGELDGGVLLTLMTYRLPAYLELILPLGLFLGI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                 +   +E+ ++   G S+  LI   +    +++  + +    + P+     ++L 
Sbjct: 61  LMAYGRLYLESEMTVLHACGLSQGKLIGFTMVSTFVVACVVGVFSLYLGPEGVRASEKLL 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIV----DSRDTQTHKIY 187
           A+ +    F  L+   F  LD    I      + +   LQ +F+     DS D     + 
Sbjct: 121 AEQRNRTDFETLKPARFHELDGGSGISYAESISDDKQKLQKVFMAKLAPDSVDDDL-TVL 179

Query: 188 YAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            A+SG   +D     + ++L +G  +   P   +  +++FK+++      +   +  K  
Sbjct: 180 TAESGETVVDAETGVKYLLLKNGRRYVGRPGEVNYKVVEFKTFSQILPEPDYEAVKPKKE 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              LS                    R+    RL+  +  ++ GL+++     R   RQ +
Sbjct: 240 TDGLS--------TAQLFERDTLAARAALQWRLSLPVLVMVVGLLAVP--LSRTQPRQGR 289

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +   L   F +           + +  +I +L++       + LL+I
Sbjct: 290 YAKMLPAILLYIFYLVCVNGARGAIEDGSAPFIGLLWVVHGAFFCLALLLI 340


>gi|224586302|ref|YP_002640101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470830|gb|ACN48660.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 359

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 125/351 (35%), Gaps = 22/351 (6%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F++Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N + +            R+E H R+T      +  L+ +         RQ +
Sbjct: 241 QMDMRTLWNTDND----------RARAELHWRITLVFTVFMMALMVVP--LSVVNPRQGR 288

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 +S+  +  ++  F  I   I+ N     +  +      ++  L +
Sbjct: 289 -----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 334


>gi|254446201|ref|ZP_05059677.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260509|gb|EDY84817.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 392

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 142/383 (37%), Gaps = 35/383 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPTVL 61
            F  YIL  +  + L + L   FI  + + ++    +++    ++    ++ G L+P V 
Sbjct: 2   LFHRYILWNVAVTSLGAILMFAFIVLLGEFMRDLFGMLAEGQVTVGTCFRLVGLLLPYVF 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P          +  ++   E++ +  +G S   L   V+FLAIL  +         
Sbjct: 62  VHALPMGLLTGIMISMGRLSSQGEVVALRASGVSIARLASSVVFLAILGVVTSIAVNFEF 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+  +  +   A+A       ++    F +      +       +  L+ ++I    D 
Sbjct: 122 GPRAINAYRGEIAEAVRTGPLRFIIPRKFVKDFPGFVVYAGAKEDD-VLRELWIWKLDDG 180

Query: 182 QTHK-IYYAQSGSIDLDR----QAIILNDGEV-HRKSPISKDISIM----KFKSYTLQTE 231
                +  A+SG+++LD       ++L  G +    S   +D S +     F S+ L  E
Sbjct: 181 GRTTSLIKAESGTLELDEYEQTLRLLLRSGSIAKMDSKDPEDFSEIRGELSFGSFPL--E 238

Query: 232 SANSSTIVLKAND---------------QNLSFLLNPNPNNPNYR--PELLETYRSEFHK 274
               S +  K                  + L  LL+   ++   R    +L   +  FH+
Sbjct: 239 FPIDSILEKKPRRVKMYWLVGGELMSEWRRLDKLLSGEIDSEVRREAARMLAEAKMAFHE 298

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +L   +  + F L++I        V++++    + I+L +    +   + I     Q   
Sbjct: 299 KLAAGVSVLSFALMAI---PLGISVQRKETSANLGIALGLGVLYYLMTALIGWGGGQGMP 355

Query: 335 YIPILYLFL-FCISSIFLLMIKK 356
           +  +LY    F +  I L +I +
Sbjct: 356 FPHLLYWIPNFLLQGIGLWLIYR 378


>gi|238750167|ref|ZP_04611670.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
 gi|238711711|gb|EEQ03926.1| Inner membrane protein yjgP [Yersinia rohdei ATCC 43380]
          Length = 364

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 129/365 (35%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIIAALILAVATSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F   +D    + I   +       +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSNDGSSALFIGNVS-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q + LN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVIVADSGHMTERPDGSQVVTLNKGTRYEGTALLRDFRITDFVDYQAIIGHKEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A   N+  L   N  +           R+EFH RLT  +  VI  L+ +      
Sbjct: 241 QNNTVAEQMNMKQLWRSNEPDA----------RAEFHWRLTLIVSVVIMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++++      + L +
Sbjct: 289 INPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASSGKLDPLVWMWTVNGVYLALAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|330997503|ref|ZP_08321352.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
 gi|329570534|gb|EGG52258.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
          Length = 633

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++ +     F+ +    +FI  +  + + ++ +     +L++L     Y   T+
Sbjct: 4   IKKIDIFVFKAYSLLFVGTFFICLFIFLMQFMWRYVDELIGKGLTLDVLAHFFYYASLTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL +   G   + +++P++   ILL I  F  +NI
Sbjct: 64  IPMSLPLAILLASLITFGNLGERFELLSMKAAGIPLVRILQPIIIFNILLCIGSFYFQNI 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
             P+ +     L    +       + E +F+       I + K    N  L G+ I  + 
Sbjct: 124 TGPEAQKKFYTLIYSMKQKSPELEIPEGIFYSEIPGYNIFVEKKGKENGMLYGVMIYSTT 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDI 218
           D  +  +I  A S  +          + +  GE  R      ++
Sbjct: 184 DGYEDAQIVLADSAELKTTADEKHLMLTMYAGERFRNMQAQGNM 227



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 20/148 (13%)

Query: 219 SIMKFKSYTLQTESANSSTIVLKA--------NDQNLSFLLNPNPNNPNYRPELLETYRS 270
             + F +   +   +    ++  A        N+     L++ + +      +   T+  
Sbjct: 317 QTLNFDTLYSKLTVSQQQGVLRNAMQKSTIATNEYEFRGLISKDID------QSTRTHWV 370

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
           E+HK+ T  L  + F  I    A   A++R+     P+ IS++I F  ++  +    K+ 
Sbjct: 371 EWHKKFTLSLACLFFFFIG---APLGAIIRKGGLGVPVVISVTI-FIFYYIINVSGEKMA 426

Query: 331 QNPYYIPIL--YLFLFCISSIFLLMIKK 356
           ++  +IP    +L    +  I + +  K
Sbjct: 427 KSGEWIPWFGEWLSSMVLCPIGIFLTYK 454


>gi|225164329|ref|ZP_03726596.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
 gi|224801063|gb|EEG19392.1| permease YjgP/YjgQ family protein [Opitutaceae bacterium TAV2]
          Length = 379

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 143/380 (37%), Gaps = 30/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPT 59
           MK  + +I   +  +   + L   F+  V   L+ +   + + + ++  + K+   L+P 
Sbjct: 1   MKILQRHIFLSVLTTCFAAVLLFTFVLIVGNALKDLLQFALAGQITMPDMAKLLLLLVPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+    P         VL  M+ N+E+  +   G     + +P+L LA+  S+   I   
Sbjct: 61  VVAFALPIGVLTGVLLVLGRMSGNSEITAMRAAGLGIAFVTRPILLLAVAGSVICLIVNY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-S 178
              P  R   K +      +     +    F R   +  + + + +    L+ +++ +  
Sbjct: 121 YYMPMTRKPYKNMVPNIVRSDPLKLITARTFLREFPNAVVYVDEKD-GTVLRDLWVWELD 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPI-----SKDISIMKFKSYTLQ 229
           RD +  + ++AQ G +  + ++    + + +G    +        +K +++  F S   +
Sbjct: 180 RDKRVVRAHHAQEGELAYNEESHKLVLKVREGTTELRDRDDPEAFNKVVTVSTFGSAEFE 239

Query: 230 TESANSS---TIVLKANDQNLSFL--------LNPNPNNPNYRPELLETYRSEFHKRLTQ 278
              +N     T   K +   L  L          P+ + P  +   ++   +  +K+   
Sbjct: 240 FSLSNLFGRITTRQKLDWMTLEELKAQREQLTAAPDADTPEGQMRRMQVDVT-LNKKAAN 298

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP- 337
            L  + F LI +    K +    R++         +   +++  S +   +E  P + P 
Sbjct: 299 ALAVLAFALIGVPLGIKVS----RRETSANLGMALLLILIYYMLSGVAGWLEAYPRWRPD 354

Query: 338 -ILYLFLFCISSIFLLMIKK 356
            I+++     +     ++ +
Sbjct: 355 LIVWVPPLLFAGFGAWLLSR 374


>gi|187929751|ref|YP_001900238.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|309781533|ref|ZP_07676269.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|187726641|gb|ACD27806.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|308919946|gb|EFP65607.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 372

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 127/367 (34%), Gaps = 26/367 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            FE  + R +  +     L ++       +++ + + ++   + N +L + G      L 
Sbjct: 2   IFEQALRRELSFTAGAVFLVLLTFMLTTLVIRILGMAANGEANPNDVLLLIGLATLGYLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    VLT   +++E+++   +G S    I+PVL  ++   + + +      
Sbjct: 62  ILLCATLFISVLLVLTRWYKDSEMVVWFTSGISLTDFIRPVLRFSLPFIVLVALLALFGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F       Y+  I   +      + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRDVLSMISAGRFIEPAHGNYVLFIEGVDSGMKHARNLFVANAEQ 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +      A++G         + ++L+ G  +  +P   D  I++F  Y ++  +    +
Sbjct: 182 DKIGVAV-AKTGEFKTMPNGDRFVVLDKGRRYEGTPGKLDYRIVEFDKYGVKVANKPPQA 240

Query: 237 TIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              L    ++   LL +P P N             E   R+   L  + F LI+I  A  
Sbjct: 241 DANLPTKSRSTKDLLADPTPENLG-----------ELVWRIGLPLLALNFVLIAIPLA-- 287

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI---FLL 352
               R  +    IF  L   +  +     +             +  +   +++     LL
Sbjct: 288 YVNPRLGRYTPMIFAVL--IYLTYSNLLNLSQAWVSQGKMNVFMAWWPIHLAAFICAVLL 345

Query: 353 MIKKKYT 359
              + Y+
Sbjct: 346 FRFRHYS 352


>gi|254498611|ref|ZP_05111330.1| permease [Legionella drancourtii LLAP12]
 gi|254352151|gb|EET10967.1| permease [Legionella drancourtii LLAP12]
          Length = 359

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 124/368 (33%), Gaps = 20/368 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  + +     +V I    Q++Q +N  +S T    I++K+    +PT+L 
Sbjct: 2   IIFRYLAREVFVTLIALTSILVLIFLSNQLIQYLNRAASGTIPGVIIMKLMMLELPTLLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +        +   +E+ ++   G     L++    +AI +++ +        
Sbjct: 62  LLVPLGFYIAMLVAYGRLYAESEMTVLRACGYGPNQLLQHSFIMAIGVALIVAAVMIWAS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNT-LQGIFIVDSRD 180
           P       +L     +      +    F    +      +   + +++  + +F+     
Sbjct: 122 PYIYIERAKLLRTTGIQTLVQTIMPGRFHAAHNGQEVFYVQSMSRDHSKAEHVFLAKRSK 181

Query: 181 TQT---HKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            +      + +A     + D       IIL DG+ ++ +P   D  I +F  Y  +    
Sbjct: 182 EKNKMRWDVLWADKAFAETDAKTGEDYIILQDGKEYQGTPGHADYQISEFGEYKARLPHP 241

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               I       + + L   N  +P           +E   RL+  +  +   L+++   
Sbjct: 242 IVK-INDDLRTFSTASLWPLNNADPGKA--------AELQWRLSVPIMVLTLTLVAVP-- 290

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R   R  K        +         F      +         L+   F + ++ L +
Sbjct: 291 LSRINSRSGKYAKLFPAIIIYILYANLMFIGRDAIVSGKIPQWLGLWWIHFLVVALGLFL 350

Query: 354 IKKKYTKI 361
           I +   K+
Sbjct: 351 IWRNQVKL 358


>gi|313668050|ref|YP_004048334.1| hypothetical protein NLA_7120 [Neisseria lactamica ST-640]
 gi|313005512|emb|CBN86948.1| conserved hypothetical integral membrane protein [Neisseria
           lactamica 020-06]
          Length = 356

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 123/363 (33%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++EL +I   G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +     L+ + + +  I I +  P++TL GI I +  D
Sbjct: 121 IAPALNQKAENIKAAAINGKISTGNT-GLWLK-EQNSIINIREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  D  +  L +           + S    ++  +  +      +++
Sbjct: 179 KNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSTAAEENLPISVKRNLMEVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     +  N R +  + Y      +L   +   +  L+++         R
Sbjct: 239 KPDQMSVGELTAYISHLENNR-QNTQIYAIALWHKLVYPVAAWVMALVALAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +     +    F +        P+   IL   LF +  I   +I+K+
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGI--WLIRKQ 353

Query: 358 YTK 360
             +
Sbjct: 354 EKR 356


>gi|206900512|ref|YP_002251020.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
 gi|206739615|gb|ACI18673.1| permease YjgP/YjgQ, putative [Dictyoglomus thermophilum H-6-12]
          Length = 356

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 126/363 (34%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y L+     F +  L    I  V  +   ++LV + +  L +  ++    IP  
Sbjct: 1   MKIISKYFLQNFIPVFFVGLLLFTTILLVSPLFIIMDLVVARSIPLKVAFELFLTKIPPY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V+   + + E++ +  +G S    +  +L  +  + + +F     
Sbjct: 61  LTYTFPMAIFLAVVYVIGQFSEHGEIMAMKASGASIKYFLPAILVFSFSVQLIMFYVNEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
           + PK     K L +K+   +     E    F  +++ +    K +P N    + + I   
Sbjct: 121 VAPKAYEREKFLLSKSYNNIAVQSRE--NVFFNENNNFYFFRKVDPKNKRFEEILLIELL 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSS 236
                  I YA+  + D  +      DGEV+  +     I   +FK Y   L        
Sbjct: 179 ERGNIKLIIYAKKATWDEIK-GWTFMDGEVYSLNKEGDMIFQGRFKEYKVVLDRNPYQLV 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  + ++  +++            L   ++EFH R+       IF ++++      
Sbjct: 238 PSSKPIEEMSIFEIIDQ-IRLLEGTGLNLNNLKTEFHIRIALPFTCPIFAILAL---GLG 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP-YYIPILYLFLFCISSIFLLMIK 355
             + +  +     +S+   F  +  FS      +     Y    +L       I + ++ 
Sbjct: 294 LNMGRGGRSLSFGLSVISIFVYYVLFSIGRSLAKAGIVSYFLGAWLGNIIFLIIGIYLLN 353

Query: 356 KKY 358
           KK 
Sbjct: 354 KKR 356


>gi|123440874|ref|YP_001004865.1| hypothetical protein YE0501 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332160137|ref|YP_004296714.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122087835|emb|CAL10621.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318607297|emb|CBY28795.1| putative permease [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664367|gb|ADZ41011.1| hypothetical protein YE105_C0513 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859699|emb|CBX70035.1| lipopolysaccharide export system permease protein lptF [Yersinia
           enterocolitica W22703]
          Length = 364

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 129/365 (35%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA++ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALILALVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I           +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVT-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGYMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A+   +  L   +  +           R+EFH RLT  +  ++  L+ +      
Sbjct: 241 QNNNAADQMTMKQLWRSHQPDA----------RAEFHWRLTLIVSVIVMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P ++++    + + L +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNASSGKLDPSIWMWAVNGAYLALAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|187250532|ref|YP_001875014.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
 gi|186970692|gb|ACC97677.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
          Length = 364

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 138/369 (37%), Gaps = 18/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     Y+++ +   FL +   +VFI +++  ++  NL  +    +  + K    L+P V
Sbjct: 3   INIISKYMIKNLLTFFLGALFVLVFIFFMMHFIKLFNLAMTFGADMLWVFKTLVKLVPDV 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P  F +     L +M+ N E++ +   G S   + KP+   A+ L + +F   N 
Sbjct: 63  FSLCAPMAFQLAVLLTLGNMSENGEIIALRAAGFSFKEITKPLFIFALFLFLVIFSFTNW 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGI-FIVDS 178
           I PK   +        +  +    LE   F  + D   + +   +P  N +  +  +  +
Sbjct: 123 ITPKNTKSFLDARNNVRGRIGKVILEPKTFMEIGD-WSLYMESLDPKTNLMSQVRLLNKN 181

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANS 235
                     A SG ++   D   + L DG++ R S      I    FKSY +      +
Sbjct: 182 DSANYTTKINALSGIVNVTSDYVGLKLFDGQMQRVSSEDPSKIMAANFKSYHVTFPLVRA 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE------FHKRLTQWLFPVIFGLIS 289
               L+  +     L+        Y  EL +  R+E        + L      ++     
Sbjct: 242 KERRLREEEFTTPQLIAR-----IYSGELTDKERAEHKTNVAMRQVLALSPLVLVLLSCP 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +V +  +   +    +  I I LS    +  G S +  K E   Y+ P L +    I S 
Sbjct: 297 LVFSFGKRANKAWGMLWSIVIVLSFYMLLMAGVS-LGKKYEIAAYFAPFLPIAAGLIVSR 355

Query: 350 FLLMIKKKY 358
           +L   + K 
Sbjct: 356 YLWKTRLKR 364


>gi|293369978|ref|ZP_06616545.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|292634896|gb|EFF53418.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
          Length = 638

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 10  IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 70  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNV 129

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I   +
Sbjct: 130 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMK 189

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +  +I YA SG ++   D+Q + L+
Sbjct: 190 DGFEKARIIYADSGRLEMTADKQHLWLH 217


>gi|22297556|ref|NP_680803.1| hypothetical protein tlr0012 [Thermosynechococcus elongatus BP-1]
 gi|22293733|dbj|BAC07565.1| tlr0012 [Thermosynechococcus elongatus BP-1]
          Length = 379

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 125/368 (33%), Gaps = 27/368 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YILR + R F+        IA  +  +   I  +      L   +++    +PT 
Sbjct: 18  SLLDRYILREMIRPFVFGFGIFTAIAAVIGTVFYLIRNMVEHHLGLLSAIQVFFLRLPTF 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P           + ++R +EL+   + G S + L++P L       +  F    +
Sbjct: 78  AVLGIPMAMLFGALLSYSQLSRRSELIACKSCGVSPVRLVRPALLAGFCALLCTFALNEL 137

Query: 121 IEP-KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIV 176
           + P      IK L               N+F+R   D     +  +       +  + ++
Sbjct: 138 VAPPLAYRAIKTLEVAIHRPQPTFQTR-NIFYRRFGDGHLRQLFFAHRFDGKVMGQVTVL 196

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-----RKSPISKDISIMKF----KSYT 227
           +    +  +I  AQ         A +   G  H     R   +++  S  +F        
Sbjct: 197 NFEQGELREIITAQEAQWQ--GSAWLFRQGTYHHLRGDRDYDVAEIFSERRFAYPRTPLD 254

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
           L  E+     +  +   + L  L        +   + L  +R +  ++L+     + F +
Sbjct: 255 LAMETRVPEFMTSREIYRYLQILA------ESGDAKRLRQWRVQLQEKLSLPFLCLSFAV 308

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCI 346
           I    A       ++ +     +S++I FG +   F +         + I   +L    +
Sbjct: 309 IG---AVLGISSPRQGQGRAFGLSVAIIFGYYVAAFIFTAFGEGGAVHPIVASWLPKGIV 365

Query: 347 SSIFLLMI 354
           S+I L M+
Sbjct: 366 SAIALGML 373


>gi|33240287|ref|NP_875229.1| putative permease [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237814|gb|AAP99881.1| Unclassified ABC-type transport system permease [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 403

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 127/370 (34%), Gaps = 23/370 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++ R +   F  +      ++  V  +   +  +  S  +L   L++    +P+ L
Sbjct: 32  LLDRWLFRELLPPFFFAISAFTVVSLSVGVMFDLVRKIVESGLALKFALQVFFLKLPSFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ N+E+  + + G S   +I   + L +L++   FI  ++I
Sbjct: 92  VISFPMAILMATLLTFSRLSSNSEVKALKSIGISTKRMIVAAITLGLLMTGITFIFNDLI 151

Query: 122 EPKCRSTIKQLSAK-----AQLALTFSYL--EENLFFRLDDDLY-------IKISKYNPN 167
            P    + +    +              +            ++            ++  N
Sbjct: 152 VPSANKSAEATLRRGLGVSMHSDYVTDIMYSRFGKIVDPSSNISRDGMTHLFYAKEF-QN 210

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            T+  + ++D       ++  A+ G  +        +DG +   +P     SI  F++Y 
Sbjct: 211 KTMIDVTLLDFSRLGYKQMLVAKKGYWNNLEANWEFHDGNILTIAPNGGSTSI-SFENYV 269

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR--PELLETYRSE--FHKRLTQWLFPV 283
              +S       +   D N   L +       Y+    L E  R E    ++ T  +  V
Sbjct: 270 YPLDSGPKKIAKI-PKDANYMTLSDAYKAKDLYKLSGNLKEVRRMEVRIQEKFTLPMACV 328

Query: 284 IFGLISIVAADKRAL-VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           +F LI    A        Q +      + +   + + + FS +      +P+      + 
Sbjct: 329 VFSLIGSSLACSPNTRSTQGQGFALSIVLILAYYILSFVFSSLGVSGALSPFVGAWSPVI 388

Query: 343 LFCISSIFLL 352
           +     ++LL
Sbjct: 389 ISLSGGLYLL 398


>gi|222099907|ref|YP_002534475.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
 gi|221572297|gb|ACM23109.1| Permease YjgP/YjgQ family protein [Thermotoga neapolitana DSM 4359]
          Length = 1048

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 125/343 (36%), Gaps = 6/343 (1%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             FL+     +    +  + Q  +L+      +  L  +  Y +P  + M  P    +  
Sbjct: 1   MPFLIGLGGFIIFVSIEILYQLSDLIVRHRVGIGKLFLLLYYYLPYFVAMGVPVGVLLSI 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
               + ++ + EL+ I   G S+  LI P LFL++LLS+ +F   + + P  +S  ++  
Sbjct: 61  FWTFSKLSEDRELMAIQVHGISQKNLIVPFLFLSVLLSVIVFFLNDQVVPVYQSRAEEAM 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSG 192
           +K  L     ++ EN+  ++ +D Y  + KY+   NTL  + I         KI  A+  
Sbjct: 121 SKYVLKKPEVFVVENVISKIGEDQYFYVEKYDEKTNTLWNVVIFKY--GSEEKIVTAKR- 177

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSFLL 251
            +    +   L DG  +           + F    L       +   V K   +     L
Sbjct: 178 -VQKREERWYLFDGRYYTVDKDGFLKLDVHFSEMELDITEDIENLLRVGKTPREMTGKEL 236

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
                           +  E   R    L P++  L+ +  +    L  +   +   F+ 
Sbjct: 237 KEKIEFFRKVGIKPSPWIVELQSRYANSLTPIVIVLVGVPLSLLFQLRSKSWGVIFTFVL 296

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + +  G     S +  +   +P + P +   +F +    L ++
Sbjct: 297 VVLYQGSGAWLSAMGKENLLDPGFAPWIPNIVFSVMGGLLFVL 339


>gi|307566095|ref|ZP_07628553.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
 gi|307345283|gb|EFN90662.1| putative membrane protein [Prevotella amnii CRIS 21A-A]
          Length = 633

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 91/213 (42%), Gaps = 6/213 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F+ +    +F+  +  + + ++ +     ++++L +  GY+   ++
Sbjct: 5   KKLDIFIAKQFGLLFVGTFFISLFVLMMQFLWRFVDDLIGKGLTIDVLAQFFGYMALMMV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I   G S     + ++ + IL+++  F  +N I
Sbjct: 65  PQALPLAVLLSSLMTYGNLGESSELTAIKAAGISLFQSFRGLIGITILITLLSFYFQNNI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P  +  + QL    +       + E +F+       + + K N     L  I +    D
Sbjct: 125 APVAQKHLYQLIISMKQKSPELEIPEGVFYSGIPQTNLYVEKKNLKTGHLYNIMVYRMTD 184

Query: 181 T-QTHKIYYAQSGSIDLD--RQAIILN--DGEV 208
           + +   I  A SG +     ++ ++LN  +GE 
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLVLNLWNGEW 217


>gi|94311740|ref|YP_584950.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
 gi|93355592|gb|ABF09681.1| predicted permease [Cupriavidus metallidurans CH34]
          Length = 372

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 127/362 (35%), Gaps = 21/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L ++       +++ + + ++   S N +L + G      L 
Sbjct: 2   IFQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGMAANGKASPNDVLMLIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  ++G S   LIKPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSSGVSLRDLIKPVLQFAAPFFVMALLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F    +  Y+  I   + +    + +F+ ++  
Sbjct: 122 PWANQQSALFRDRFEQRGVLSMIASGRFIEPANGNYVLFIEGIDADMKHARNVFVANAES 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSS 236
            +   +  A  G  +      + +++  G  +   P   +  I++F  Y ++ ++    +
Sbjct: 182 GKIG-VALAHQGQFETMPNGDRLVVMEHGRRYAGIPGQLNYRIVEFDKYAVKVDNKPQDA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L    ++   L+           +       E   R++  +    F +I+I  A   
Sbjct: 241 AADLPTKSRDTIDLI----------RDPTRENLGELLWRISLPILAFNFVMIAIPLA--Y 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R  +    +F  L   +  +     +     ++      + ++   ++     ++  
Sbjct: 289 VNPRLGRYTPLVFAVL--IYLTYSNLINLAQAWVRSGAMSFWMAIWPIHLAVFLCALVMF 346

Query: 357 KY 358
           +Y
Sbjct: 347 RY 348


>gi|238760356|ref|ZP_04621497.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
 gi|238701416|gb|EEP93992.1| Inner membrane protein yjgP [Yersinia aldovae ATCC 35236]
          Length = 364

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 127/365 (34%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LAI+ S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLIMAALVLAIVTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P        +   A+   + + L    F    D    + I   N       +F+   R  
Sbjct: 122 PWSSKHQDDVLNDARANPSLAALAGGQFKSSTDGNAALFIGNVN-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A  G +       Q ++LN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADRGHMTERPNGSQVVVLNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +  L + +              R+EFH RLT  +  +I  L+ +      
Sbjct: 241 QNNNVVEQMTMKQLWSSDEPEA----------RAEFHWRLTLIVSVIIMALLVVP--LSA 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+++++    + + + +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLIWMWAVNGTYLAIAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|237729198|ref|ZP_04559679.1| YjgP [Citrobacter sp. 30_2]
 gi|226908927|gb|EEH94845.1| YjgP [Citrobacter sp. 30_2]
          Length = 366

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 123/356 (34%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  SI   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQMRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  N+  L   +           +  R+E   R+T      +  L+ +       
Sbjct: 242 DPNDTDQMNMRTLWTTD----------TDRARAELTWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +  +   L          S   +  +     +  ++       ++ +++
Sbjct: 290 NPRQGRVLSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWTVNLAYLALAIVL 345


>gi|237744434|ref|ZP_04574915.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431663|gb|EEO41875.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 359

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 120/332 (36%), Gaps = 12/332 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + + G S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIIFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDS 178
           I P+    +K +  K         L+E  F    D   I + K + +   + I  F    
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFVDNLDGYSIYVDKVDSDGKAKNIIGFEKSK 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++   +   +         AII+ + +        K   I  F    +  +  N   +
Sbjct: 181 DKSKFPLVLTGEEAFWK--DSAIIVKESQFVSFDETGKKNLIGTFDENRIVLK-PNFQEL 237

Query: 239 VLKAND---QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
            +K  D    +++ L+             +  Y+ E  ++L      V   +I   ++  
Sbjct: 238 SIKIKDVEALSITELIRGLKK---VEATEVIKYKIEIFRKLALVFSTVPLAVIGFCLSLG 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
              + ++   I  + I  +    +  G     
Sbjct: 295 HHRISKKYSFILAMIIVFAYIIFLNVGIVMAT 326


>gi|78186277|ref|YP_374320.1| hypothetical protein Plut_0389 [Chlorobium luteolum DSM 273]
 gi|78166179|gb|ABB23277.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 360

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 125/348 (35%), Gaps = 11/348 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R   ++F+ + L  V +  +I +++ ++      +    + +   + IP  
Sbjct: 1   MKILDRYIFRQFVKTFIFTSLAFVALFMLIHMVENLDDFMDKNQGFEAIAQYYLFAIPQT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    +    V   +  ++EL  I + G S   L+ P L   +++S     +   
Sbjct: 61  ILITSPVSSLLAAILVAGKLAVSSELPAIRSAGVSMGQLLYPFLLGGMIISTINLTNSFW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL----DDDLYIKISKYNPN-NTLQGIFI 175
           I P    T++  + +          EE     L      +  I +   NP+ ++ + + I
Sbjct: 121 IAPAA--TLRNNNFELTELGHQRRDEEGGNSNLHILEPGNRIITLGSLNPDMSSAREVSI 178

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                        A     + +++A +L +         S+           L     + 
Sbjct: 179 EQFSQKGIVSRSDADGMRYNPEKKAWVLENAAERMFEDGSERFWTEPMLPVQLHLSLQSL 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + + L+ ++ N++          +     LE    + H +L+     +I   I I+    
Sbjct: 239 AELNLRPDEMNIARHWQYLSEKKHAGFAGLERSSVKLHTKLSLPFASLI---IIIIGVPL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            A  ++      I ISL   F +F G    I     N    P+L  +L
Sbjct: 296 SAKKKRGGLAAEIGISLFAGF-LFLGLQKTIATFGYNGVMPPMLAAWL 342


>gi|189501480|ref|YP_001957197.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496921|gb|ACE05468.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 527

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 7/224 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +  +L    + F++     VFI  +   L   + +        + +++  Y     
Sbjct: 4   IKRTDKIVLTPFIKLFILVLSVTVFIMLMQFFLIYFDELIGKDLGFWVYVQLFCYFGINA 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            PM  P    + +  V  S+    EL  + + G   I +++P+LFL  LLSIF++ S   
Sbjct: 64  TPMAFPLATLVSSLMVFGSLGEQLELTALKSAGIPFIRILRPLLFLVTLLSIFVYFSNGY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           I PK       L    +       ++E +F+    D  I++ +  P+  TL+ I I D +
Sbjct: 124 IVPKVTVKAHTLLYDLRKKKPSIAIKEGVFYNGIPDYSIRVERKLPDQKTLEDIVIYDHT 183

Query: 179 RDTQTHKIYYAQSGSIDL--DRQAII--LNDGEVH-RKSPISKD 217
           ++     +  A  G +    + Q ++  L +G  +  K P  KD
Sbjct: 184 KNKGNVHMTTASFGQLTTINNGQYLVIELFNGHNYLEKLPEKKD 227


>gi|239815707|ref|YP_002944617.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
 gi|239802284|gb|ACS19351.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
          Length = 379

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 139/358 (38%), Gaps = 18/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + + + RSF  + + +V I   + +++ + L S  + + + +  +  Y +   +P
Sbjct: 2   LFHSSLRKELSRSFGATLVVLVTIVMTMMLIRTLGLASKGSVNPSEVFLVMAYTVLGYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  ++G      ++P+   A  + + + +   +  
Sbjct: 62  TILSLSLFIAIVGTLSRMYRDSEMVIWFSSGRGLADFVEPLFRFAWPVLVLIAVMALLGW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNN-TLQGIFIVDSRD 180
           P   S    + A+ +       +    F      +    I K  P+  T   +FI  + +
Sbjct: 122 PWANSQTIGMRAQYEGRSDIERVTPGEFRESSGRMRVFFIDKDTPDGATATNVFIW-AVE 180

Query: 181 TQTHKIYYAQSGSI--DLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQTESANS-S 236
                   A+SG I    + + ++L++G+   R    +  + I +F++Y  +    +  S
Sbjct: 181 RGLQITTSARSGRIENVGNNRFLMLSNGQRLERPLLPTAGLKISEFETYGTRAGGTSDFS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAADK 295
                A  +    LL           E  +    E   R+   L  + F L+++ V++  
Sbjct: 241 ADNTPARAKPTLQLL----------REPGDASHGELAWRIGMLLAAINFVLLALTVSSVN 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             + R    +  +F  +     +  G S+I         ++ +L+  +  I   +LL+
Sbjct: 291 PRVGRSGNLLFALFAFVVYYNMLNLGQSWISSGRFSMGSFMLLLHGGVLLIGVAWLLL 348


>gi|124025509|ref|YP_001014625.1| putative permease [Prochlorococcus marinus str. NATL1A]
 gi|123960577|gb|ABM75360.1| possible permease [Prochlorococcus marinus str. NATL1A]
          Length = 395

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 137/372 (36%), Gaps = 27/372 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +IL  +      S      ++  V  I   I  +       ++ ++I    +P+ +
Sbjct: 24  LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFI 83

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T     S+N N+E+  + + G S   +I P L L+I +S   FI  N I
Sbjct: 84  VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRIILPGLILSIAMSYMTFIFNNNI 143

Query: 122 EPKCRSTIKQLSAKAQLALTFS-------YLEENLFFRL-----DDDLY--IKISKYNPN 167
            P      + + A +      +       + ++            + +       K+  +
Sbjct: 144 VPNTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFI-D 202

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             +  + ++D       ++  A+ G  + D+      +G++   SP   +    KF S  
Sbjct: 203 GQMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRT-KFLSFL 261

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP----ELLETYRSEFHKRLTQWLF 281
           Y L TE  N + +   +ND NL      N     Y+     +     +    ++ T  + 
Sbjct: 262 YPLGTELTNIAQLPKDSNDMNLGE---ANTAMKLYQSSGNIKEARRMKVRIQEKFTLPIA 318

Query: 282 PVIFGLISIV-AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             +F LI       +++   + +      I + I + + + FS +  K   NP++     
Sbjct: 319 CSVFALIGCSFGVMQKSGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSP 378

Query: 341 LFLFCISSIFLL 352
           +FL  +   FLL
Sbjct: 379 VFLSMLGGGFLL 390


>gi|320335817|ref|YP_004172528.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319757106|gb|ADV68863.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 366

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 141/368 (38%), Gaps = 17/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ ++ Y++  I    +   + ++    V  +L+ I  + +   S  ++ ++    +P  
Sbjct: 6   LRRYDRYVMAEILPLLVAGLVVVMLAVLVGALLEVIAPLLAKGASPALVARLVALQLPEA 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P  F   T   L+ ++ + E+      G +   L  PVL + + +++  F+    
Sbjct: 66  IKIGLPVGFLFATLLGLSRLSSDAEIKAALAGGVAPGRLFLPVLLMGVGVTVAAFVIGET 125

Query: 121 IEPKCRSTIKQLSAKAQLALT--FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P+ ++    +  +  L         +  L  R   +  I +++  P   L+G+ +V  
Sbjct: 126 LGPRAKTESLSVQRQIVLDNPRVLGLDQPGLILRDALNRAISVTRVRPGGVLEGVRVVAL 185

Query: 179 RDTQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL---QTESAN 234
           R++     I  A+ G +  D   + L DG+          +++++F+   L     +++ 
Sbjct: 186 RESGGPSSIITAREGHLR-DSNVLELLDGQRITYQDGRP-VTVIRFRRGELPVQDLQASF 243

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            ++   K  D  L  L               +   +   ++  + L  +  G  ++  A 
Sbjct: 244 KTSDAPKPIDTPLPQLWAKVQTYAQQHVNAPQETTA-LQRKFAEPLAALAMGFFAVALAL 302

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIF 350
                 +      +   L ++F  +  +S     + ++    P++  +    L+ ++ + 
Sbjct: 303 ---FTFRSGLNVGLVWVLLLTFAYYASWSVF-RVMGESGALPPVVAAWTPDVLYLVAGLV 358

Query: 351 LLMIKKKY 358
           LL I  + 
Sbjct: 359 LLAIAARR 366


>gi|298483137|ref|ZP_07001317.1| permease [Bacteroides sp. D22]
 gi|298270654|gb|EFI12235.1| permease [Bacteroides sp. D22]
          Length = 632

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++     F+ +    +FI  +  + + ++ +      ++++ +   Y   T+
Sbjct: 4   IKKLDIFIVKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +     +     ELL +   G S + +++P+ F    L    F  +N+
Sbjct: 64  VPVSLPLAVLLASLITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLIGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  ++ +  L    +       + E +F+    D  +K++K N     L  + I   +
Sbjct: 124 VGPIAQAKLGTLILSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMK 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
           D  +  +I YA SG ++   D+Q + L+
Sbjct: 184 DGFEKARIIYADSGRLEMTADKQHLWLH 211


>gi|256027205|ref|ZP_05441039.1| hypothetical protein PrD11_04296 [Fusobacterium sp. D11]
 gi|260494013|ref|ZP_05814144.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289765182|ref|ZP_06524560.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|260198159|gb|EEW95675.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|289716737|gb|EFD80749.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 359

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 120/332 (36%), Gaps = 12/332 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVAMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + + G S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSAGMSIRDILKPILAIAIGAAIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDS 178
           I P+    +K +  K         L+E  F    D   I + K + +   + I  F    
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDGYSIYVDKVDSDGKAKNIIGFEKSK 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++   +   +         AII+ + +        K   I  F    +  +  N   +
Sbjct: 181 DKSKFPLVLTGEEAFWK--DSAIIVKESQFVSFDETGKKNLIGTFDENRIVLK-PNFQEL 237

Query: 239 VLKAND---QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
            +K  D    +++ L+             +  Y+ E  ++L      V   +I   ++  
Sbjct: 238 SIKIKDVEALSITELIRGLKKIEATE---VIKYKIEIFRKLALVFSTVPLAVIGFCLSLG 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
              + ++   I  + I  +    +  G     
Sbjct: 295 HHRISKKYSFILAMIIVFAYIIFLNVGIVMAT 326


>gi|237747610|ref|ZP_04578090.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378972|gb|EEO29063.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 357

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 123/344 (35%), Gaps = 23/344 (6%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           + +  I   + +++ +   +    + + +L + G+     LP++      +    V+T  
Sbjct: 1   MTLFTITITMMLIRILGQAAKGRVASDDVLALLGFTSLNYLPIILILTGFVSVLLVVTRS 60

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
            +++E+++   +G S    ++PV+  AI + + + +      P       +   + +   
Sbjct: 61  YQDSEMVVWFASGLSLTRWLRPVIEFAIPIVVLVSLLGFFATPWAYRQSAEFRERFEKRE 120

Query: 141 TFSYLEENLFFRL-DDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
             + +    F           + K + + N ++ +FI  +R+        ++ G+++ + 
Sbjct: 121 DIARISPGKFQESAAAQRVFFVEKMSDDLNKVKNVFINSTRNGNI-TTVVSKEGTVETNE 179

Query: 199 QA---IILNDGEVHRKSPISKDISIMKFKSYTLQTES-ANSSTIVLKANDQNLSFLLNPN 254
           +    I+L+DG  + ++P      IM F  YT    S A+ S   + A       L+   
Sbjct: 180 KGEKFIVLDDGIRYEETPDQSGFRIMDFDKYTAYIASKADMSGTNVSARSMTTMELMT-- 237

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                   ++    + E   R+      +   LI +         R  +  + I   L  
Sbjct: 238 --------DINSHKQGELLWRIGLPF--MAILLILLGIPLGFVNPRAGRSFNLIIAVLLY 287

Query: 315 S----FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                   F     +  KI     + P+  +    I  +F   +
Sbjct: 288 MTYSNLLSFMQAYVVQKKIMFGLAWWPLHLIVALVIVLLFAWRL 331


>gi|251771423|gb|EES52002.1| permease YjgP/YjgQ family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 377

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 112/327 (34%), Gaps = 17/327 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+   +   F +S L +V +    Q L  +NL+ +   S+  + ++   + P  
Sbjct: 1   MKIIHRYLFLELLTPFFLSLLVLVILLLTQQALLIMNLLVNKGLSVETVFRLLSMIFPQF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P      +T     +  + E++    +G S   L+ P+   A +     F     
Sbjct: 61  LSMIIPVSVLTASTATFHRLASDGEIIAFKASGISLSRLLLPLFLFAAIGFGTNFYLSLK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                  +++ L  +         ++   F        I + K    + + G+FI     
Sbjct: 121 AMETQGLSLQDLLVRVFQKKLSLAIKPQSFNNFMGRFIIYVEKMPTLSHIDGVFIYQKEK 180

Query: 181 TQTHKI-YYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               +   +AQSG I  +R      + L+ G   ++         ++F SY L     ++
Sbjct: 181 KTGPRTVIFAQSGEILNERHPPGLRLKLSHGTFFQEGSAQ---QYIRFGSYDLTITGHHT 237

Query: 236 ST-IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              I +K+ D+  + +      +P+    L + Y+         + +P      + +   
Sbjct: 238 DDSIRVKSIDEIRAEIARSPSPDPSLFRALEDRYK--------NYTYPFSCFFFAFLGIP 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWG 321
                 +  ++     +       +  
Sbjct: 290 YGIYTMRSGRLAGFVFATVTVILFYMM 316


>gi|126640321|ref|YP_001083305.1| hypothetical protein A1S_0228 [Acinetobacter baumannii ATCC 17978]
 gi|332874943|ref|ZP_08442794.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
 gi|332736886|gb|EGJ67862.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
          Length = 341

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 120/327 (36%), Gaps = 16/327 (4%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           ++++   + +      +IL  I GY +P  L ++ P  F +    V   +  + E+ +++
Sbjct: 5   RLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 64

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G SR  L + ++ + ++  +   +    + P      ++L+    +   F  +    F
Sbjct: 65  GSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVRPREF 124

Query: 151 FRLDDDLYIKISKYNPNNT-LQGIFIVDS--RDTQTHKIYYAQSGS---IDLDRQAII-L 203
                   I     + +   L+ IF      ++ +   +  A+  +   +  D   ++ L
Sbjct: 125 ISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDL 183

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
             G  +   P     +  +F+SY L+ E+           +   +  L    N+P     
Sbjct: 184 VQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPVV--- 240

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                RSE   RL      +I  ++S+  ++      +  ++ P     +    +     
Sbjct: 241 -----RSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVLMIAIK 295

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIF 350
             I K E + +  P+  L     +++F
Sbjct: 296 TRISKGELDIWAYPVALLVYAIAAALF 322


>gi|297171529|gb|ADI22527.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF0500_09M11]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 129/350 (36%), Gaps = 26/350 (7%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           ++    +V +    + ++ +   ++   + + L  +  + +P  L M+ P    +    V
Sbjct: 4   VLVTFILVMVLVSGRFIKYLAEAAAGQIAADALFLVMAFRLPEFLQMILPLSLYIAILLV 63

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L  M+ + E++++   G     +++ ++  A++    + +    + P+  + + ++  + 
Sbjct: 64  LGRMHMDNEMVVLRAGGQGDGRVVRSLIVPALVAMSVIALFALYVTPQGDAEVNRIFEEQ 123

Query: 137 QLALTFSYLEENLFFRLDDD---LYIKISKYN-PNNTLQGIFIVDSR----DTQTHKIYY 188
           +       L    F    DD           N     L+ +F+ D+     +       +
Sbjct: 124 KGRSVLELLTPGRFHVKGDDDNQRATYAESLNREEGVLESVFVADASFSSEEAGRLLTVW 183

Query: 189 AQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           A+SG++        + L DG  ++  P   D   + F+   ++  S  SS+   +   ++
Sbjct: 184 ARSGNLVQQDGISYLELTDGYQYQGKPGEADYREVAFEKARVRIGSERSSSRPPEVRGRS 243

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
              L++          +      +E   R +  L   I  L ++     R   RQ + + 
Sbjct: 244 TLDLID----------DGGNQAMAELAWRWSLVLTVPIMCLAAVP--LSRVNPRQGRFLR 291

Query: 307 PIFISLSISFGVFWGFSY----IIHKIEQNPYYIPILYLFLFCISSIFLL 352
            I   L     V    +           + P+Y  ++++ L    ++F+L
Sbjct: 292 MIPAVLGYMLYVGLLLTMRSWIAEVPGSERPWYYSMVWIHLIAGFAVFML 341


>gi|261401001|ref|ZP_05987126.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|269209118|gb|EEZ75573.1| permease, YjgP/YjgQ family [Neisseria lactamica ATCC 23970]
 gi|309378517|emb|CBX22870.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 356

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 123/363 (33%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMTAMTVYTLLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++EL +I   G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLATLIGGLLSLGRLAADSELTVIKAGGVSTRKLLSVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +     L+ + + +  I I +  P++TL GI I +  D
Sbjct: 121 IAPALNQKAENIKAAAINGKISTGNT-GLWLK-EQNSIINIREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  D  +  L +           + S    ++  +  +      +++
Sbjct: 179 KNELVQATEAESAVLNDDGSWQLKNIRRSTLGEDKVETSSAAEENLPISVKRNLMEVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K +  ++  L     +  N R +  + Y      +L   +   +  L+++         R
Sbjct: 239 KPDQMSVGELTAYISHLENNR-QNTQIYAIALWHKLVYPVAAWVMALVALAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +     +    F +        P+   IL   LF +  I   +I+K+
Sbjct: 296 HGNMGLKLFGGICLGLLFHFAGRLFGFTARLYGVPPFLAGILPTALFALIGI--WLIRKQ 353

Query: 358 YTK 360
             +
Sbjct: 354 EKR 356


>gi|152981611|ref|YP_001354150.1| hypothetical protein mma_2460 [Janthinobacterium sp. Marseille]
 gi|151281688|gb|ABR90098.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 376

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 134/363 (36%), Gaps = 23/363 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    + + ++ + G+     LP
Sbjct: 2   IFQRALRRDLLSTAGAVFTTLFTITITVTLIRILGQAAGGKIASSDVVALLGFSALNYLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++   +G S    I+PVL   + +     +    + 
Sbjct: 62  ILLNLTGFVAVLLVVTRSYQDSEMVVWFASGLSLAKWIQPVLMFGLPIVTLTAVLSLFLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           P           +       + +    F      D    +   + ++T ++ IF+    +
Sbjct: 122 PWSNEQSAVYKERYANREDIARVSPGKFQESSSSDRVFFVEGVSGDSTKVKNIFVSSVLN 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A+ G++++D+     ++++ G  +   P   D  +M+F  Y +   + + + 
Sbjct: 182 -GKTSVVVAKEGTVEIDQAGDKFLVMHQGRRYDGIPTQSDFELMEFDRYGVLVATQSKAL 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   +     +  L  N NN N           E   R++  L  ++  L++I       
Sbjct: 241 VGDTSARATSTKELLSNRNNFND---------GEILWRVSLPLMGILLMLLAI---PLGF 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-----PYYIPILYLFLFCISSIFLL 352
           +  +  +   + I+L +        S+    + QN       + P+  + L  ++  F  
Sbjct: 289 VNPRGGRSANLLIALFLFVFYSNMLSFAQATVVQNRSTLMLAWWPVHLVALIVVAVFFTW 348

Query: 353 MIK 355
            +K
Sbjct: 349 RLK 351


>gi|72382010|ref|YP_291365.1| putative permease [Prochlorococcus marinus str. NATL2A]
 gi|72001860|gb|AAZ57662.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. NATL2A]
          Length = 395

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 137/372 (36%), Gaps = 27/372 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +IL  +      S      ++  V  I   I  +       ++ ++I    +P+ +
Sbjct: 24  LLDRWILFELLPPLFFSIAAFTVVSLSVGVIFDLIRKIVEIGLPFSVAIQILLLKLPSFV 83

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T     S+N N+E+  + + G S   LI P L L+I +S   FI  N I
Sbjct: 84  VISFPMAMLLSTLLAYGSLNDNSEIKALKSIGISVYRLILPGLILSIFMSYMTFIFNNNI 143

Query: 122 EPKCRSTIKQLSAKAQLALTFS-------YLEENLFFRL-----DDDLY--IKISKYNPN 167
            P      + + A +      +       + ++            + +       K+  +
Sbjct: 144 VPSTNKNAEIILANSLGRSFANEQGEDIIFSKKGEILDPYSSYKKNGVTHLFYAWKFI-D 202

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             +  + ++D       ++  A+ G  + D+      +G++   SP   +    KF S  
Sbjct: 203 GQMLDVTVIDFSKLGFTQMLKAKKGIWNSDKNNWEFFEGDILTLSPDGSNTRT-KFLSFL 261

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP----ELLETYRSEFHKRLTQWLF 281
           Y L TE  N + +   AND NL      N     Y+     +     +    +++T  + 
Sbjct: 262 YPLGTELTNIAQLPKDANDMNLGE---ANTAMKLYQSSGNIKEARRMKVRIQEKITLPIA 318

Query: 282 PVIFGLISIV-AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             +F LI       ++    + +      I + I + + + FS +  K   NP++     
Sbjct: 319 CSVFALIGCSFGVMQKRGGGRSQSFGLSIILILIYYILSFSFSSLGVKGIINPFFAAWSP 378

Query: 341 LFLFCISSIFLL 352
           +FL  +   FLL
Sbjct: 379 VFLSMLGGGFLL 390


>gi|317969817|ref|ZP_07971207.1| permease [Synechococcus sp. CB0205]
          Length = 400

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 111/352 (31%), Gaps = 22/352 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  V  + + +  V+ +   L    K+    +P  L
Sbjct: 27  LLDRWLFAEMLGPLLFGIAAFTAVSLSVGVVFELVRKVAEAGLPLWAAGKVLALRMPGFL 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ ++EL  + + G     ++ P L LA L+++  F+  ++I
Sbjct: 87  VLSFPMATLMATLLAFSRLSGSSELTALRSIGVKTWRMVVPALVLAALMTLLTFVFNDVI 146

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY---------------IKISKYNP 166
            P    +   +   A      +   +N+ +     +                    ++  
Sbjct: 147 VPSANYSASNVLDSALGRALSAQTGKNVVYSRFGRITPKEPGGNAGEGLTQLFYAKEF-K 205

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS- 225
           N  +QG+ ++D       ++  A +   D +R      +G +      +   +   + S 
Sbjct: 206 NGEMQGVTLLDFSREDQQQVLTANTAVWDENRAMWEFRNGRILNIDAANNFTTSANYTSY 265

Query: 226 -YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPV 283
            Y       +   +   A    ++               +     R    ++       +
Sbjct: 266 YYPFTRAPQDVGMLPSDAAQMTVAQARRAEALLVQAGDQKEARRLRVRIQEKFAFPAICL 325

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           +FGLI      +     +  +     IS+ + FG +           +   Y
Sbjct: 326 VFGLIGSSLGVRPNS--RTSRSQGFGISVLLIFGYYLMSFIFSSLGIKGTLY 375


>gi|149927923|ref|ZP_01916173.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
 gi|149823362|gb|EDM82595.1| hypothetical protein LMED105_07563 [Limnobacter sp. MED105]
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 126/357 (35%), Gaps = 21/357 (5%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           +   ++   + + +  I     +++ +   +        +  +        LP       
Sbjct: 9   KDFAQTAGATFVALFTIIVTTVLVRTLGQAAGGKVDNAEVFTLILLGGLQYLPAALVITV 68

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +    V++   +  E+     +G S  +L++PVL  A+ L++   +    + P  ++ +
Sbjct: 69  FIAVMGVVSRAFKEQEMTAWFASGVSLFSLVRPVLRFAVPLTVLALVCSVWLTPWAKAEL 128

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN--NTLQGIFIVDSRDTQTHKIY 187
                +       S +    F    +   +   +        ++ +F+VDS    T  + 
Sbjct: 129 DAAKDRFAKRSDVSKVSAGQFRESGEGNRVFFVERQSEVTKQVENVFVVDS-KGDTRTVV 187

Query: 188 YAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            A  GS+++D   +  ++L+ G         +  +  +F++Y L  ++   +    +   
Sbjct: 188 SAARGSVEVDASGQPYLVLSGGRRATLDGTGERFTSTEFETYGLAIDNTLGAAPSFQLQH 247

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           + +  L+           +     + E   R++  +  ++ GL++I  A    +  +   
Sbjct: 248 RRVDLLI----------ADFSPAAQGELLWRVSLPMSALVLGLLAIPLA---FVNPRGGN 294

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNP--YYIPILYLFLFCISSIFLLMIKKKYT 359
                 +L I        S     + +    +++ ++      +   +LLM+K+   
Sbjct: 295 SLNQLFALLIYLTYSNIVSVTQSMVTKETLDFWVALVLPHASVLLMFYLLMVKRNRP 351


>gi|237653449|ref|YP_002889763.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
 gi|237624696|gb|ACR01386.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
          Length = 360

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 94/271 (34%), Gaps = 7/271 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   + R   ++     + +  I     +++ +   +      + ++ + G+     LP
Sbjct: 2   IFRRALQREFAQTAAAVFVALFAILISTVLIRLLGQAAGGRVPPDAVVALIGFGALAQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V      +     L+   R++E+++   +G      I+PVL  A+ + +        + 
Sbjct: 62  TVLTLTLFIAILVSLSRSYRDSEMVVWFASGVPLTAWIRPVLMFALPVVLVAGGGSLYLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVDSRD 180
           P  +    +   + +       +   +F        +   +     +  ++ +F+ +   
Sbjct: 122 PWSQQKSAEYRERLENRDDTHRVAPGVFRESASAQRVFFVEVGAGEDGRVRNVFVSEQTR 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    +  +  G +  D      ++L  G  +  +P + +  +M+F  Y +Q E    + 
Sbjct: 182 SGQLVVIASAEGYLRGDADGRRFVVLEKGRRYDGTPGTPEYRVMEFDRYEVQVEQKQVAG 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
              +      + LL      P    EL+  +
Sbjct: 242 QQARIRALPTAVLLAQPE--PRGLGELVGRF 270


>gi|237745416|ref|ZP_04575896.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229376767|gb|EEO26858.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 347

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 126/335 (37%), Gaps = 23/335 (6%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           + +++ +   +    + + ++ + G+     +P++      +    V+T   +++E+++ 
Sbjct: 1   MMLIRILGQAAKGRVASDDVMALIGFTSLNYMPIILILTGFVSVLLVVTRSYQDSEMVVW 60

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
             +G S    ++PV+  A+ + + + +      P       +   + +     + +    
Sbjct: 61  FASGLSLTRWLRPVMEFALPIVVLVTLLGFFATPWAYRQSAEYRERFEKREDIARISPGK 120

Query: 150 FFRL-DDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILN 204
           F           + K + + + ++ +FI  SR+ +      +Q+G+++ + +    ++L 
Sbjct: 121 FQESAAAQRVFFVEKMSEDLSKVKNVFINSSRNGKI-TTVVSQNGTLETNEKGEKFVVLE 179

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
           DG  + ++P   D  IM+F+ YT         TI    + ++++ L            + 
Sbjct: 180 DGIRYDETPDQSDFRIMEFEKYTAYIAPKGEVTIS-DISTRSMTTL--------ELVTDT 230

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV-----F 319
                 E   R+     P +  L+ ++A     +  +  +   + I++ +         F
Sbjct: 231 TSKKLGELVWRIG---LPFMATLLMLLAIPLGFVNPRAGRSFNLIIAVLLYMTYSNLSSF 287

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                   K+     + P+       I  +F   +
Sbjct: 288 IQAYVAQQKLAFGLAWWPLHLSVALVIVLLFAWRL 322


>gi|85374865|ref|YP_458927.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84787948|gb|ABC64130.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 437

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 127/365 (34%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           S + YI R      +   +    +  + ++L+  + V+     + ++ K+ G LIP    
Sbjct: 31  SIDRYIFRLTIVPMMAVFVLAASLLLLDKMLRLFDFVAVEGGPIGVVFKMLGALIPEYAS 90

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +        +  ++EL ++   G     L++    +  +L          I+
Sbjct: 91  LAIPLGLLLGILFAFRKLATSSELDVLRAVGMGYGRLLRVPYIITAILVAVNVALVFYIQ 150

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDT 181
           P  R   +QL  + +     + ++   F  L D + ++I +   N   L+GIF   S D 
Sbjct: 151 PISRYYYEQLEYELRSGALGASIKVGEFTTLADRMALRIEESEDNGRNLKGIFARVSNDK 210

Query: 182 QTHKIYYAQSGSI-----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                  A+ GS        D   + L DG + +    ++   ++ F  + L  +     
Sbjct: 211 GQVLSISAREGSFLATTDSSDTIILRLTDGTIVQ-DTGNQTPRVLSFTRHDLPIDLPAIE 269

Query: 237 TIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +     +  L  LL+   ++     +  +  ++ F+ RL +     +  +  +   
Sbjct: 270 QFRQRGDAEREYILPELLSIGWSDTESEAK-RDASQASFNFRLVE-----VVMMWLLPLL 323

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWG-----FSYIIHKIEQNPYYIPILYLFLFCISS 348
                +  ++    + + +SI   V +         +      +P         LF    
Sbjct: 324 ALSLAIPPKRSTSALGVFVSIVMVVSYHKVNQYGEDVAALGRVDPIVALWGPFVLFAALI 383

Query: 349 IFLLM 353
           +++  
Sbjct: 384 LWMFW 388


>gi|307155108|ref|YP_003890492.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
 gi|306985336|gb|ADN17217.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 7822]
          Length = 405

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/375 (13%), Positives = 129/375 (34%), Gaps = 24/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +   +++S      +   +  +    N V      +   LKI  Y +P 
Sbjct: 33  ISLMDRYIATQLIPPYILSVGLFTSMGVAIANLSDLSNKVLEYDLPIVDALKILLYRVPE 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++  +EL+ + + G S      P + L+++++   FI   
Sbjct: 93  FFSYALPISVLLTTLMTYGRLSSESELIALRSCGISLWRATIPAVMLSLIVTGLTFIFNE 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLY-------IKISKYNP 166
            + P+       +  K        +  +++F       +L +              K++ 
Sbjct: 153 CVVPETNYRATGILVKVLHEERHFWQNKDIFYPNYEQIKLPNGQTLRQLKSLFYAEKFD- 211

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS- 225
              +Q + I++    + ++I  + +   + D+      DG V+     +     + FK  
Sbjct: 212 GQKMQSLTIINWLGERLNEIVVSDTAQWNSDQNIWDFFDGTVYLIDGNAAYKEAVTFKHQ 271

Query: 226 -YTLQTESANSSTIVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            + L  E+   ++      + NL   +   N    +   + +  +     +++      +
Sbjct: 272 QFPLPKEAFEFASQGRSPYEMNLFQAVQYKNLLQESGDTKNVRFFEVRIQQKIAFPFICL 331

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YL 341
           +FG++      K   + +      + +++ I F  +   ++            P +  +L
Sbjct: 332 VFGVMGAAIGAKPQQMSRGTS---LGLTVGIVFAYYMV-NFFTGSFGMIGLLSPSMAAWL 387

Query: 342 FLFCISSIFLLMIKK 356
             F    I   ++KK
Sbjct: 388 PNFFGVGIGGWILKK 402


>gi|126658379|ref|ZP_01729528.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
 gi|126620311|gb|EAZ91031.1| hypothetical protein CY0110_27505 [Cyanothece sp. CCY0110]
          Length = 394

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 132/380 (34%), Gaps = 25/380 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ ++I    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMRILVLKMPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++E++ + + G S   LI PV+   ++++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVND 139

Query: 120 IIEPKCRST----IKQLSAKAQLALTFSYL---EENLFFRLDDD------LYIKISKYNP 166
            I P         +++   + +       +   E       D              +YN 
Sbjct: 140 WIAPAATHEAALTLQRAVNQERPDFKERNIVYPEYKTIQEEDGQQATVLTRLFYAEEYNG 199

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  ++G+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+  
Sbjct: 200 D-KMKGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQHQ 258

Query: 227 TLQTESANSSTIVLKAN--DQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFPV 283
            L    A       + N  +  ++           +   + +   +    ++       +
Sbjct: 259 QLALPRAPLDLANRRQNFTEMTIAQTKEYLKAMQLSGDEKRVRKVKVRLQEKYAMPFVCL 318

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           IFG++      +        K     + + + FG +                 P L  +L
Sbjct: 319 IFGVVGAAIGVRPQNT---NKATSFGVCVGLIFGYYLLAFMSTSLGIW-GILTPFLGAWL 374

Query: 344 ---FCISSIFLLMIKKKYTK 360
                +++  LL+I+    +
Sbjct: 375 PNILGLTAGSLLLIQSARLR 394


>gi|197287277|ref|YP_002153149.1| permease [Proteus mirabilis HI4320]
 gi|194684764|emb|CAR46793.1| putative permease [Proteus mirabilis HI4320]
          Length = 365

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 133/365 (36%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   +S +     ++ I +  ++++ +          N+++ +    IP +  
Sbjct: 2   IIIRYLARETLKSQIAILFILMLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ +++  G  +  L++  L L++L S+    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYVESEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+   A+   + + L E  F    D ++ + +      N  Q +F+   R  
Sbjct: 122 PWSSVHQEQVLEDAKANPSLAALMEGQFKMSSDRNMVLYLGSV-KGNQFQDVFLAQLRPT 180

Query: 180 DTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             Q   +  A  G    +    Q ++L++G  +  + + +D  I  F  Y        S+
Sbjct: 181 QNQRPSVVVADKGYTKELPNGNQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHREST 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +   + ++ L +                 +EFH RLT     VI  L+ +      
Sbjct: 241 ISRNRVEQKTMNELWHSTEPES----------IAEFHWRLTLIFSVVIMALMVVP--LSE 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              RQ + +  +   L   + VF+     +    +     P++ ++        L ++  
Sbjct: 289 VNPRQGRVLSMLPAML--LYLVFFLLQSSLRSSGEKGKVDPLIAMWTVNGIYFALALLLN 346

Query: 357 KYTKI 361
            +  +
Sbjct: 347 AWDTL 351


>gi|172036942|ref|YP_001803443.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
 gi|171698396|gb|ACB51377.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
          Length = 394

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 119/346 (34%), Gaps = 23/346 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ +KI    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGTLFDLVRRVTESGLMLSVAMKILVLKMPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++E++ + + G S   LI PV+   ++++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYSRLSSDSEIIALRSLGVSVYRLIIPVILFGLVVTGCAFIVND 139

Query: 120 IIEPKCRSTIKQLSAKA----QLALTFSYL----------EENLFFRLDDDLYIKISKYN 165
            I P           +A    +       +          E+     +   L     +YN
Sbjct: 140 WIAPAATHEAAVTLQRAVNQERPDFKERNIVYPEYKTVQEEDGQQVTVLTRL-FYAEEYN 198

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            +  +QG+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+ 
Sbjct: 199 GD-KMQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQH 257

Query: 226 YTLQTESANSSTIVLKAN--DQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFP 282
             L    A       + N  +  ++           +   + +   +    ++       
Sbjct: 258 QQLALPRAPLDLANRRQNFTEMTIAQTQEYLKAMQLSGNEKRVRKVKVRLQEKYAMPFVC 317

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +IFG++      +        K     + + + FG +         
Sbjct: 318 LIFGVVGAAIGVRPQNT---NKATSFGVCVGLIFGYYLLAFMSTSL 360


>gi|89094618|ref|ZP_01167555.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
 gi|89081088|gb|EAR60323.1| hypothetical protein MED92_00295 [Oceanospirillum sp. MED92]
          Length = 358

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 130/354 (36%), Gaps = 21/354 (5%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
                  ++ I    + ++ ++  ++     ++L  I  Y +P  L ++ P    +    
Sbjct: 1   MFAVSAVLLVIIMSGRFVKYLSRAAAGELDPSVLFSIMAYRLPGFLELILPLGLFLGFLL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               +   +E+ +++ TG S+  L+   +  AI +++ +      + P   S   ++   
Sbjct: 61  GYGRLYLESEMTVLEATGMSQKRLVSYSMGPAIFVAVIVGSLSLFVSPYGASETNKIFDD 120

Query: 136 AQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDTQTHK-IYYAQSGS 193
            +       L    F +  +        +   + TL  +F+ D   +     I  A++GS
Sbjct: 121 QEGRSELESLVPGRFQKNKNTGRVTYTDEVKDDGTLGLVFMADRNHSTQRLQITVAETGS 180

Query: 194 I----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
                D  ++ ++L +G  +   P   D   ++FK Y  + E  N      K      + 
Sbjct: 181 TLIDQDKGQRFLVLEEGYRYEGEPGQSDYVEVEFKRYGSEVERRNQEIRYDKVEALPTAM 240

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
           L      +          ++++ + RL+  +  ++  L+++     R   RQ  +   + 
Sbjct: 241 LWGSEEPS----------HQAQLNWRLSLPVLALVVTLLAVP--LSRVNPRQG-RFARLV 287

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI--KKKYTKI 361
            S+ I        S     + +       +++  F  ++  L MI   + ++++
Sbjct: 288 PSILIYLTYITILSNTTSNVSEGETSPLTIWIVHFVFAAFALNMILFGRFWSRV 341


>gi|295690097|ref|YP_003593790.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295432000|gb|ADG11172.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 400

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 129/369 (34%), Gaps = 15/369 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +    +      V    + +IL+ ++ +S S+     + +++  L+P  
Sbjct: 6   MRLIDRYLLRLLFWPLVGCLGVTVVALLLERILRLLDALSQSSARFGYVAQLAANLVPHY 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P  F +    V+  ++  +E+  +  +G S   +  P L + + LS+F  I    
Sbjct: 66  LGLALPVAFFVALFIVIAKLSDGSEVDALLASGQSLERIAAPFLAVGLFLSVFSLIVFGY 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           ++P  R   + +   A  A     L    F      L    S      +L  +FI     
Sbjct: 126 MQPYSRYAYRAVMHAAINAGWNGRLAGGAFIDDKGSLLTADSADIAGQSLTRVFIRRLDA 185

Query: 181 TQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
               +I  A S ++ +D       + L DG        +     + F S T QT  A ++
Sbjct: 186 KGREEIITAGSANLKMDPGGKTVTMDLRDGRRI-VRDDNGQYRNLAFNSLTTQTPLAAAA 244

Query: 237 ----TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                      +  L  L     +      +   T  SE + RL +  F      + ++A
Sbjct: 245 VLLRDRGGDERELTLGELATQAKSPHPVVSK--STLLSELYGRLARAAF---LPFLPLLA 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFL 351
                  ++  +   + ++  +               + +     P +++     SS  +
Sbjct: 300 FPLGLASKRGNRAAGLIMAGVLLLAFQHALLLGQSLAKADKVAAAPAIWIPFALFSSFAV 359

Query: 352 LMIKKKYTK 360
            +     T+
Sbjct: 360 WLFLGSRTR 368


>gi|294508120|ref|YP_003572178.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
 gi|294344448|emb|CBH25226.1| Conserved hypothetical protein containing permease domain
           [Salinibacter ruber M8]
          Length = 492

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 110/282 (39%), Gaps = 13/282 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++     +LR +   F      ++F+  +  +++ +  ++     +++++++  Y +  +
Sbjct: 21  LRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGKGIPVSVIVELIAYNLAYM 80

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I +TG S   ++ P L +A LL   +    N+
Sbjct: 81  VVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFNNV 140

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD-S 178
           + P+     +QL +  +       L   +F+   +D  I +    P  N L  + I D +
Sbjct: 141 MLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRPPGTNKLIDVTIYDYT 200

Query: 179 RDTQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSP-----ISKDISIMKFKSYTLQ 229
           +      +  A+ G I+      R  + L +GE+HR  P      S+    + F  + ++
Sbjct: 201 QGRDRQAVIKAERGVIESSAGGARLTLTLRNGEMHRPLPPDANNQSERYERLTFDRHRIR 260

Query: 230 TESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYR 269
              +N      ++ +  ++   +  P   +     +     R
Sbjct: 261 FTLSNVVFRRSESEETARSTRTMRTPRLLDTLDSLKTERDAR 302



 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
            +  ++   + +Y+ EF+K+ +  L  +IF    +V A     +R+        ++L I 
Sbjct: 370 RDTEWQTRRIRSYQVEFYKKFSIALACLIFM---VVGAPLGLALRRGGLATIGAVALGI- 425

Query: 316 FGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMI 354
           F ++W       K+ +  ++ P   +++    +S   L +I
Sbjct: 426 FMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLI 466


>gi|254527024|ref|ZP_05139076.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
 gi|221538448|gb|EEE40901.1| unclassified ABC-type transport system permease [Prochlorococcus
           marinus str. MIT 9202]
          Length = 401

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 135/376 (35%), Gaps = 23/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  V  +   I  +      L + LK+  + +P+ L
Sbjct: 25  LIDRWLLGQIIPPMVFAISAFTVISLSVGVMFDLIRKIVEYGLPLFLALKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 144

Query: 122 EPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDL---------------YIKISKY 164
            PK     +  L A    + +    +EN+ F R    +               +I  +++
Sbjct: 145 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNNSKLTHIFYAQW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             N  ++ + ++D       +I  A S   D    + I + G +   +P  +  +I KFK
Sbjct: 205 YKNKLMENVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITPSGQTTNI-KFK 263

Query: 225 SYTLQTESAN--SSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
            YT          + +   AN+  L   +            + +   +    ++ T    
Sbjct: 264 EYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFA 323

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++FGLI   +   ++ +R  K        + I       F +    ++     +   +L
Sbjct: 324 CLVFGLIG-SSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSFGVKGILPAVFAAWL 382

Query: 342 FLFCISSIFLLMIKKK 357
            +       + +++K 
Sbjct: 383 PVLISLGGGIYLLRKS 398


>gi|88703588|ref|ZP_01101304.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
 gi|88702302|gb|EAQ99405.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
          Length = 362

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 124/350 (35%), Gaps = 23/350 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +    L     ++ I    + ++ +   +S   +  ILL +  Y +P  L 
Sbjct: 2   KLRGYLAGDVLGHTLAVSSVLLAIILTGRFVKYLAEAASGKLAAEILLPVMFYRLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E++I+   G     L    L  A+L+ + +     ++ 
Sbjct: 62  LLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLASFTLAPALLIMLVVAGLSLLVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P+  +  + L    Q       L    F    DD  +   +  +P    L  +F+    D
Sbjct: 122 PQGVARSEALLNDPQALQGLQLLAAGRFQPRGDDGTVTYAADIDPEAGELDQVFLYAPED 181

Query: 181 TQTHK----IYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
                    +  A+ GS+ +D ++    + L DG     +P   D  I++F ++  +   
Sbjct: 182 RTADTEVAGVTVARRGSVVVDPESGVRYLELRDGYRFSGTPGRADYRIVRFGTFGQRLPD 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             S       + +  + LL+ +              R+  H RL+  L   +  +++++A
Sbjct: 242 TPSMARSEPVDAKPTAALLDSDNAED----------RAALHWRLSVAL---MVPVVALLA 288

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                   +R +   +  +L +     +  + I   + +       +YL 
Sbjct: 289 LSLSKTNHRRGRYIKLAPALLLHLSYLFALASIRTSVAEGDAPAYQMYLL 338


>gi|237736827|ref|ZP_04567308.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
 gi|229420689|gb|EEO35736.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
          Length = 360

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 15/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI +   +SF++S +  + I  V Q+ + +  +S    +    +     L+P  
Sbjct: 1   MKIIDKYISKNFIKSFMLSLMAFMGIFIVSQLFRVVKYLSDGRFTPGDAVYYIITLLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   ++SM  N E++ +  +G     ++   + ++ ++S  +F   + 
Sbjct: 61  FIDVAPLAVLLGSMMTISSMASNLEIISLKTSGIKFRRIVLFPIIISAIISGVVFFVNDT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDS 178
           + P      + L +           + N F R +D  YI + +         + I IVD 
Sbjct: 121 LYPISLKINRDLRSGEVQKRVAPLEKRNAFLRGEDSNYIYLMQKVNRETGFAENIEIVDL 180

Query: 179 RDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             +  +  +I  A  G  +  ++  +L D  ++      K  +   F          +  
Sbjct: 181 NKSFDKIERIITAPEGRYNFGKKVWMLKDVNIYYGDDNKKPETKEFFSDSKYGDNPEHFI 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           T+ ++     +  L        +   +  E    E   R +      +   + +      
Sbjct: 241 TLTVEPRTLTIKDLKKTIREMKSIGGDTRE-LLVELGNRYSFPFASFVISFLGLALGG-- 297

Query: 297 ALVRQRKKIHPIFISLSISFG-----VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R  +    + + + +  G     V   F  +      NP+    +   +F +  I+L
Sbjct: 298 ---RYVRGTSAVSLGICVLLGYGYYVVQASFEALSANGFLNPFVGGWIPNIMFLVVGIYL 354

Query: 352 L 352
           L
Sbjct: 355 L 355


>gi|307824320|ref|ZP_07654546.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
 gi|307734700|gb|EFO05551.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
          Length = 383

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 115/321 (35%), Gaps = 18/321 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              +  +   + R+ L     IV I    Q ++ ++       S   L+ + G       
Sbjct: 23  TVLDKMVALDLLRTLLAVWSVIVVIIVSRQFIRILDRAVEGQVSNQTLMTVLGLKTIIAS 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    M    VL  M R+ E+  + + G    T+ + +  L   LS+        +
Sbjct: 83  AAFLPAALFMAVLMVLGRMYRDQEMSAVASAGGGAGTVYRSIFLLVFPLSVLSAGLSFYV 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR-LDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P   + +++L  + + +     +    F      DL   + K + + T+  +F+   R 
Sbjct: 143 SPWAEAMMEELMHQDKESADLRGIAAGKFSEYSQGDLVFYVEKIDDDKTMHEVFVQ-HRQ 201

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                I  A+ G +    D + I+L +GE  +  P + +  + +F  Y ++ E+  S+  
Sbjct: 202 GDRLAIINAEVGRLRDLPDGRYIVLENGERIQGQPGTVNYVLEQFTEYAVRMETKESAAN 261

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             K +  + +   +   N+            +E  +R +    P+   L+S +A     +
Sbjct: 262 FGKESVASGTLASSGQIND-----------IAELQRRFS---IPMGIVLLSFIAVPLAQM 307

Query: 299 VRQRKKIHPIFISLSISFGVF 319
             +      + +   I F   
Sbjct: 308 SPRGGVYGNMLVGFLIYFSYG 328


>gi|262373934|ref|ZP_06067211.1| permease [Acinetobacter junii SH205]
 gi|262310945|gb|EEY92032.1| permease [Acinetobacter junii SH205]
          Length = 366

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 124/355 (34%), Gaps = 16/355 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    Q+++     +       +LL I  Y +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVTALLTLIIMGGQLIKIFGRAAQGRLDAGVLLSIIAYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L K +L +  +  +          
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRNQLAKLLLPMTFVYLLVQSFLMFWGS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD--SR 179
                  + L     +   F  +    F        I     + +   L+ IF      R
Sbjct: 122 SSGIRAYESLMQTQAVRAGFDLVRPKEFISSGP-YTIYAGSLSEDRKNLKDIFYYQKAER 180

Query: 180 DTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +   +  A+  +     +     + L  G  +   P     +  +F+SY L+ E  N 
Sbjct: 181 EDKPDVMILAKEATRVEMANDTANVVDLVQGRRYEIYPNQPRYTQAEFQSYRLRLE--ND 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             I  +++D      +     +  ++       RSE   R+      ++  L+++  ++ 
Sbjct: 239 KDIKFESDD------VEALSMSKLWQKRDDSVVRSELGWRIFGPFVILVALLLAVALSEV 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                +  ++ P     +    +       I K E + +  P++ L     ++IF
Sbjct: 293 SPRQGRYYRLIPAIFIFASLIVLMIAIKTRISKEELDIWAYPVVLLVYAIAAAIF 347


>gi|134095577|ref|YP_001100652.1| hypothetical protein HEAR2400 [Herminiimonas arsenicoxydans]
 gi|133739480|emb|CAL62531.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 347

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 116/314 (36%), Gaps = 18/314 (5%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++ +   +    +   ++ + G+     LP++      M    V+T   +++E+++   
Sbjct: 2   LIRILGQAAGGKVASADVVALIGFSALNYLPIILNLAGFMSVLLVVTRSYQDSEMVVWFA 61

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           +G S    I PVL  A+ + +   +    + P           +       + +    F 
Sbjct: 62  SGLSLARWIPPVLVFALPIVVMTTLLSLFLTPWSNQQSAIYKERYANREDIARVSPGKFQ 121

Query: 152 R-LDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA---IILNDG 206
                D    +     +++ ++ IF+   R+     +  A+ G++++D      ++++ G
Sbjct: 122 ESSSSDRVFFVEGVAGDSSKVRNIFVSSVRN-GKTSVVVAKEGTVEIDPAGDKFLVMHQG 180

Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE 266
             +   P   D  +M+F  Y +   S + + +   +     +  L  N NN N       
Sbjct: 181 RRYDGVPTQSDFQLMEFDRYGVLVASQSQALVGDTSARALTTQELLRNRNNFND------ 234

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
               E   R++  L  V+  L++I       +  +  +   + I+L +        SY  
Sbjct: 235 ---GELLWRVSLPLMGVLLMLLAI---PLGFVNPRGGRSANLLIALFLFVFYSNMLSYAQ 288

Query: 327 HKIEQNPYYIPILY 340
             + QN     + +
Sbjct: 289 AIVVQNRAAFMMAW 302


>gi|322834556|ref|YP_004214583.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
 gi|321169757|gb|ADW75456.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
          Length = 364

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 129/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQFAILFILLLIFFCQKLVRVLGAAVDGDIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +  ++E+ ++   G  + +L+   L LA+  S+F  ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTDSEITVMHACGLGKRSLVIAALVLALFTSVFAGVNAIWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+   + + + E  F +  +   +             +F+   R   
Sbjct: 122 PWSSKHQDEVLAEAKANPSMAAMVEGQFQQAQNGNAVLFVGSVKGKEFHNVFLAQLRPNG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G +       Q ++L+ G  +  + + +D  +  F  Y           
Sbjct: 182 NQRPSVVVADKGHMLQRADGSQQVMLDKGTRYEGTALLRDFRVTDFTDYLAVIGHQAVQL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +++   ++ L N N              R+E + RLT  +   I  L+ +       
Sbjct: 242 DPNQSDQMTMTQLWNSNEPEA----------RAELNWRLTLIVSVFIMALLVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             RQ + +  +   L          S   +  +      P+L+++   +    L ++   
Sbjct: 290 NPRQGRVLSMLPAILLYLIFFLLQTSLRSNGAKGKLD--PMLWMWGTNLLYFALALVLNA 347

Query: 358 YTKI 361
           +  +
Sbjct: 348 WDTL 351


>gi|319944264|ref|ZP_08018540.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
 gi|319742559|gb|EFV94970.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
          Length = 369

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 133/358 (37%), Gaps = 21/358 (5%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           LR    S        +F   V   L + +N  +S   + + +L +  +     +P++   
Sbjct: 7   LRRDLNSVAGVMFATLFTILVTTSLIRFLNRATSDRIASSDILPLIAFNAIGFIPVLLVL 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    VL    R++E++I   +G S    I+PV+   +  +  +     ++ P    
Sbjct: 67  TVFLSVLMVLARAWRDSEMVIWFASGQSLTAWIRPVMMFVLPYAAVVAAVTFVLSPWANQ 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPN-NTLQGIFIVDSRDTQTHK 185
            I +L  +       S +    F      +    +   +P+ +T+  +F+V     +   
Sbjct: 127 QIAELRERFNQREDVSMVAPGQFRESTSSNRVFFVESMSPDKSTVSNVFVVQHNGPRM-V 185

Query: 186 IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
           +  ++ G + ++      ++L DG  +  +  + + S+M+F  Y ++ +    +T +   
Sbjct: 186 VVASRGGHVKIEENGDRFLVLEDGRRYDGTWGTPEYSLMEFLRYGVRLDPKPVNTQIESV 245

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                  L+    ++P  R EL                 P+   +I+++A     +  + 
Sbjct: 246 RGMATPDLMQ--LSSPAARGELAYRVG-----------LPISVFVIALLAIPLSFVNPRL 292

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKKKYT 359
                + I + I F      S +   I Q    +   ++L    +  + L M +K+ T
Sbjct: 293 GSSVNLVIGVLIYFTYSNLNSVVRSWITQEKLSFGVGVWLTHALVLGLALYMFRKRLT 350


>gi|292493019|ref|YP_003528458.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
 gi|291581614|gb|ADE16071.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
          Length = 374

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 117/321 (36%), Gaps = 19/321 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YIL+ +  +     L ++ I   I+ ++ +   +        +L +S Y     L
Sbjct: 8   RIVDRYILKELSLNVTAITLVLLLIFGGIRFIRFLGQATEGKVPGETILALSTYEAIGAL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +    VL  M  ++E++++   G SR  L++ VL   ++L+I +      +
Sbjct: 68  VLLLPLAAFLAVILVLGRMANDSEIVVLFACGISRGHLLRVVLAFGLVLAIGVGCISLYL 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNT-LQGIFIVDSR 179
            P   +   +L  +A LA   S L    F +               +   ++ +FI   R
Sbjct: 128 GPLASAEGYRLKQEAILAAETSGLVAGNFKKTKGGQWVFYAESLTEDRLGMRNVFIQ-VR 186

Query: 180 DTQTHKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +     ++ +  G +  D     + +IL +G  +        I I +F+ + +  +   +
Sbjct: 187 EPTQKILFRSSRGRLQTDGITGDKHLILEEGYRYDLVGNDVGIRISRFERHGILVKKGGA 246

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               ++        L                   +E   R++  +  ++  ++++  A  
Sbjct: 247 QEFRIRHKTLPTLTLWEMGAP----------KDIAEVQWRVSMPIATLLLVMLAVPLA-- 294

Query: 296 RALVRQRKKIHPIFISLSISF 316
           R   RQ +    +   L    
Sbjct: 295 RLEPRQGRYAGLVPAVLVYVI 315


>gi|319762860|ref|YP_004126797.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
 gi|330824940|ref|YP_004388243.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
 gi|317117421|gb|ADU99909.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
 gi|329310312|gb|AEB84727.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
          Length = 364

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 123/321 (38%), Gaps = 14/321 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + ++ +   + +++ +   S  + + + ++ + G+ +   L 
Sbjct: 2   LFDSSIRKELARSFGATLVVLITVVMTMMLIRVLGQASRGSVAPSDVMLVMGFTVLGQLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+L  +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGTLSRMYRDSEMVIWFSAGRGLLSLLAPLLRFSWPIMLAIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P     I++L  + +       +    F    +      I K  P+ N    +FI  + +
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRVAPGQFQESSNGSRVFFIDKDTPDANAASNVFIATN-E 180

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                I  AQS  I+     +  +L++G+          + I +F  Y    +S + S  
Sbjct: 181 AHRETITSAQSARIEIRNGERLALLHNGQRLETMLDKPGLRISEFTEYGTLIDSGSQSDP 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A     ++ L  +P+           +++E   RL      + F ++ +  A     
Sbjct: 241 EAGAIKTRDTWDLARDPSP---------RHQAELGWRLGLAFAALNFVVLGLAVAIVNPR 291

Query: 299 VRQRKKIHPIFISLSISFGVF 319
             +   +     +  + + + 
Sbjct: 292 AGRSTSLAFALFAFMVYYNLM 312


>gi|83816098|ref|YP_446193.1| hypothetical protein SRU_2087 [Salinibacter ruber DSM 13855]
 gi|83757492|gb|ABC45605.1| membrane protein, putative [Salinibacter ruber DSM 13855]
          Length = 473

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 110/282 (39%), Gaps = 13/282 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++     +LR +   F      ++F+  +  +++ +  ++     +++++++  Y +  +
Sbjct: 2   LRRLHWIVLRRLPGPFFGWLGTLMFLLLMQFLIRWLPEIAGKGIPVSVIVELIAYNLAYM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +        +  +    +I +TG S   ++ P L +A LL   +    N+
Sbjct: 62  VVLAVPMSVLLAALMAFGELAESQYYTVIKSTGISFGQIVWPALVVAALLMGGMLYFNNV 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD-S 178
           + P+     +QL +  +       L   +F+   +D  I +    P  N L  + I D +
Sbjct: 122 MLPEANHRARQLWSDIRGKRPGFELRPGIFYEDMEDYSILVQDRPPGTNKLIDVTIYDYT 181

Query: 179 RDTQTHKIYYAQSGSIDL----DRQAIILNDGEVHRKSP-----ISKDISIMKFKSYTLQ 229
           +      +  A+ G I+      R  + L +GE+HR  P      S+    + F  + ++
Sbjct: 182 QGRDRQAVIKAERGVIESSAGGARLTLTLRNGEMHRPLPPDANNQSERYERLTFDRHRIR 241

Query: 230 TESANSSTIVLKAND--QNLSFLLNPNPNNPNYRPELLETYR 269
              +N      ++ +  ++   +  P   +     +     R
Sbjct: 242 FTLSNVVFRRSESEETARSTRTMRTPRLLDTLDSLKTERDAR 283



 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
            +  ++   + +Y+ EF+K+ +  L  +IF    +V A     +R+        ++L I 
Sbjct: 351 RDTEWQTRRIRSYQVEFYKKFSIALACLIFM---VVGAPLGLALRRGGLATIGAVALGI- 406

Query: 316 FGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMI 354
           F ++W       K+ +  ++ P   +++    +S   L +I
Sbjct: 407 FMLYWITLVQGEKLSERGFFPPWLGMWIANLLMSGAGLWLI 447


>gi|291327104|ref|ZP_06127004.2| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
 gi|291311564|gb|EFE52017.1| inner membrane protein YjgP [Providencia rettgeri DSM 1131]
          Length = 343

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
              + +   +E+ ++   G  +  L+K  L LA++ ++    +   + P      +Q+ A
Sbjct: 52  MTYSKLYTESEITVMHACGLGKSVLVKAALVLAVITAMVAVANITWMLPWSSQYQEQVLA 111

Query: 135 KAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQS 191
            A+     + + E  F    D  Y+  I     +N  + +F+   R  + Q   +  A S
Sbjct: 112 DAKANPGLAAMVEGQFKTTKDGNYVLYIGDVKGSN-FKNVFLAQLRAANEQRPSVVVADS 170

Query: 192 GSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           G +  D   RQ ++LN+G  +  + + +D  I  F +Y    +   + T   +   +N+ 
Sbjct: 171 GYMKEDPDGRQVVVLNEGTRYEGTALLRDFRITDFVNYQAIVDHQTAETRSDRVEQKNML 230

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            L + N    N          +EFH RLT     V+  L+         +  ++ ++  +
Sbjct: 231 QLWSENTPEVN----------AEFHWRLTIVFSVVVMALM---VVPLSEVNPRQGRVLSM 277

Query: 309 FISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLM 353
             ++ +    F   S + +  ++ +      ++        + +++
Sbjct: 278 LPAMLLYLIFFLLQSTLRNSADKGDLDPRYTMWAVNVGYLILAIVL 323


>gi|320539289|ref|ZP_08038959.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
 gi|320030681|gb|EFW12690.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
          Length = 396

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 131/346 (37%), Gaps = 21/346 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +   +++ +  V       N++L +    +P +  
Sbjct: 34  IIIKYLVRETLKSQIAILFILLLIFFCQNLVRVLGDVVDGDVPTNLVLSLLLLGVPKMAQ 93

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  + TLI   + LAIL S    ++     
Sbjct: 94  LILPLSLFLGLLMTFGRLYTESEITVMHACGLGKRTLIIAAMILAILTSAVAAVNVFWAN 153

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRDT 181
           P   S    + ++A+   + + L E  F    D    + I      +T   +F+   R  
Sbjct: 154 PIASSYQDVVVSEAKANPSIAGLVEGQFKPSQDGNAVVFIGNV-KGSTFNNVFLAQLRTN 212

Query: 182 QT--HKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            T    +  A+ G+I+  +   Q + L+ G     + + +D  I  F +Y         +
Sbjct: 213 GTQRPSVVVAEHGNINPQKDGSQVVTLDKGTRFEGTALLRDFRITDFNNYKAVIGHRAVA 272

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               ++   ++  L   +  +           R+EFH RLT     V   L++++     
Sbjct: 273 VDNTQSEQMSMKTLWQSDDPDA----------RAEFHWRLT---LVVSVVLMALLVVPLS 319

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
            +  ++ ++  +  ++ +    F   + +     +     PI++L+
Sbjct: 320 VVNPRQGRVLSMLPAILLYLIFFLLQTALRSNAGK-GKLDPIIWLW 364


>gi|283834896|ref|ZP_06354637.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
 gi|291069156|gb|EFE07265.1| inner membrane protein YjgP [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 122/356 (34%), Gaps = 17/356 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  SI   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTSIIAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A A+     + L +  F +  +   +   +    +    +F+   R   
Sbjct: 122 PWSSRHQDEVLADAKANPGMAALAQGQFQQATNGSSVLFIESVDGSNFNDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG +       Q + LN G     + + +D  I  F++Y         + 
Sbjct: 182 NARPSVVVADSGHLTQMRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   + +            R+E   R+T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWKTDND----------RARAELTWRITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             RQ + +  +   L          S   +  +     +  ++       ++ +++
Sbjct: 290 NPRQGRVLSMLPAMLLYLLFFLVQTSLKSNGGKGKLDPVFWMWAVNLLYLALAIVL 345


>gi|88810918|ref|ZP_01126174.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88791457|gb|EAR22568.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 358

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 110/360 (30%), Gaps = 20/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y++  + R  +     +  I     + + +    S T  +  +  +        
Sbjct: 1   MLLIERYLIAEVRRPLVAVVGVLSLIFASYSVARYLADALSETLGMQAVALMVALRTLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++ P          L  +  + E+ ++   G S   +   +L LA+ +++ +      
Sbjct: 61  LEVLIPVALYASVVIGLGRLYNDQEMTVLGAVGISSARVYWAILLLALPVALAVGALSLF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-FRLDDDLYIKISKY-NPNNTLQGIFIVDS 178
             P       Q  A A + +    L    F         I   +  +    L G+ I   
Sbjct: 121 GRPWAYQQAYQAEAHAHVEIPLDRLRAGHFYVESQTGRMILAQEVDDQRGLLHGVLIY-Q 179

Query: 179 RDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           R  +   +  A+          D   +IL+DG  +          I++F   +L+ +   
Sbjct: 180 RAGEATYLTKARQARQLPTEQADEARLILHDGVTYLLDQAGSHDRILRFGELSLRLQQPQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +      +   + NP              +E   RL++ L  V+  L  +    
Sbjct: 240 PVVGYKRKAAPTAALARSGNPAEL-----------AELQWRLSRPLTTVLLALFGVP--L 286

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R   R+ +    +  +L  +                    +P ++     +  + + +I
Sbjct: 287 SRTAPRRGRFSKILLAALVYALIYSASGLAKTWVEHGVVGAVPGIWWINAVMFVVLVALI 346


>gi|84622418|ref|YP_449790.1| hypothetical protein XOO_0761 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578607|ref|YP_001915536.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58425052|gb|AAW74089.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366358|dbj|BAE67516.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188523059|gb|ACD61004.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 360

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 128/358 (35%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L D   + +   + +   L  IF+   +
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSDGGVVYMQTISADGKGLGKIFLQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG            D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGALFFEGKTDRYLHLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L  + F ++++    
Sbjct: 240 RLHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLLALAFAMLTLP--L 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKAPAALGLWWLTLPLLAVAVW 345


>gi|326626150|gb|EGE32495.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 335

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 114/327 (34%), Gaps = 22/327 (6%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +    +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E H R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELHWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMI 354
            I+ N     +  +      ++  L +
Sbjct: 284 SIKSNGGKGKLDPVIWMWAVNLIYLAL 310


>gi|332851503|ref|ZP_08433500.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332866797|ref|ZP_08437201.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332729956|gb|EGJ61287.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332734405|gb|EGJ65525.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
          Length = 341

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 120/327 (36%), Gaps = 16/327 (4%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           ++++   + +      +IL  I GY +P  L ++ P  F +    V   +  + E+ +++
Sbjct: 5   RLIKYFGVAAQGRLDASILFSIIGYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 64

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G +R  L + ++ + ++  +   +    + P      ++L+    +   F  +    F
Sbjct: 65  GSGVNRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLTTTQAVRTGFDLVRPREF 124

Query: 151 FRLDDDLYIKISKYNPNNT-LQGIFIVDS--RDTQTHKIYYAQSGS---IDLDRQAII-L 203
                   I     + +   L+ IF      ++ +   +  A+  +   +  D   ++ L
Sbjct: 125 ISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAKEATRVEVANDTANVVDL 183

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
             G  +   P     +  +F+SY L+ E+           +   +  L    N+P     
Sbjct: 184 VQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDPVV--- 240

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                RSE   RL      +I  ++S+  ++      +  ++ P     +    +     
Sbjct: 241 -----RSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVLMIAIK 295

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIF 350
             I K E + +  P+  L     +++F
Sbjct: 296 TRISKGELDIWAYPVALLVYAIAAALF 322


>gi|321222551|gb|EFX47623.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 335

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 114/327 (34%), Gaps = 22/327 (6%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +    +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGNSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E H R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELHWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLMI 354
            I+ N     +  +      ++  L +
Sbjct: 284 SIKSNGGKGKLDPVIWMWAVNLIYLAL 310


>gi|110596903|ref|ZP_01385193.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
 gi|110341590|gb|EAT60050.1| permease YjgP/YjgQ [Chlorobium ferrooxidans DSM 13031]
          Length = 359

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 126/346 (36%), Gaps = 8/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R   ++F+ +    VF+  +I +++ ++ +     S+  ++      IP+ 
Sbjct: 1   MKILDRYIFRQFAKAFIFTSTTFVFLFILITMVEHLDDMMGRNLSIFQIIGYYLLSIPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + +  V   ++ ++EL  I + G S   L+ P L  A  ++    ++   
Sbjct: 61  VLVTAPVSSLLASILVAGRLSASSELSAIRSAGVSMRQLLYPFLAGASFIAAVNLVNSCW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQG-IFIVD 177
           I P   S I +   +  L+     L EN    L    +  + I     + +    + I +
Sbjct: 121 IAPAAFSGIARFERE-HLSKEPGKLPENRNMHLIEQGNRIVSIGSMGSDESTGKAVSIEE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                      A S S +      +L +  +   +  S+  S +  K   L     +   
Sbjct: 180 FSGAHLVSRIDAASMSYNPKSGEWMLENAAIRSFTGGSEQYSFIGRKPVKLSISPRSLLE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L+ ++ N+S                L+    +F+ +L+     +I  LI +      A
Sbjct: 240 FNLQPDEMNVSRHYRYLTEKRQAGISGLDRSAVKFYTKLSLPFASLIVMLIGV---PLSA 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             ++      I I+L   F +F G    +          P L  +L
Sbjct: 297 KKKRGGLASEITIALFFGF-LFIGLQKTVAIAGYQGAMNPALAAWL 341


>gi|114797170|ref|YP_760296.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114737344|gb|ABI75469.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 391

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 128/362 (35%), Gaps = 13/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R     F    +  + +  + ++++   +VS S  +      +   LIP  L 
Sbjct: 4   RLDRYLIRSFLGMFAGLTVLAMALLLLERLIRITEIVSGSGSAFASASLLVANLIPHYLN 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F +     +  ++R+ E++ +   G S   ++ P +  +++L+    +    ++
Sbjct: 64  LALPGAFLISMILTIDRLSRSGEIVALMAAGVSLYRIVLPFVQFSLVLAAASLLISGFLQ 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P  R + +++    Q     S  +E  F +  D+  I      P   L   FI++S    
Sbjct: 124 PLSRYSYREIVYNLQHQSVLSVFQEQKFVQ-YDNRIIWTDSVLPGGRLGQTFILESEPDG 182

Query: 183 THKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDISIMKFKSYT--LQTESANS 235
              +    SG +   R       ++   G  +R +   ++   +++   +  +  E+   
Sbjct: 183 ARTLLTGGSGKLREIRAGEWEITLLGGAGASYRDADPPEEYDRIEYGELSWPVIAETGQY 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV-AAD 294
                   +  L  LL                  + FH R ++    +   LI+I+   +
Sbjct: 243 RARGGDERELFLPELLA-KAGAAMPGDIAPAVAAATFHDRTSRAALLLAMPLIAIILGLN 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              + R    +  I   L +          ++   E         +  +  +++  + + 
Sbjct: 302 LGRVARSSGVVLGILFLLGVQ---KVLEYTLVQTSEGVIPPWMGFWPIVVVVAAASIFLF 358

Query: 355 KK 356
           ++
Sbjct: 359 RR 360


>gi|163756953|ref|ZP_02164060.1| putative permease [Kordia algicida OT-1]
 gi|161323072|gb|EDP94414.1| putative permease [Kordia algicida OT-1]
          Length = 639

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 92/247 (37%), Gaps = 20/247 (8%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
           C+FI+   W+      I  ++       ++ K   Y  P ++P+V P    + +      
Sbjct: 2   CIFILQTVWL-----FIGELAGKGLDAGVIFKFLLYTTPKLIPLVLPLSILVSSIMTFGR 56

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
              + E   + +TG S    ++ ++   ++L +  F   N + P        L       
Sbjct: 57  FAESYEFAAMKSTGISLQRAMRSLIIFIVILGVGTFFFSNSVIPWSEFKQYNLRKNLAKK 116

Query: 140 LTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDSRDTQTHKIYY-AQSGSI-- 194
                + E +F  +  ++ IK+     + +  L  + I    + + ++I   ++ G +  
Sbjct: 117 KPALAIGEGVFNDI-GNINIKVDNKYGDNDQLLDKVIIHQKSNDKKNRIVMKSKKGELKS 175

Query: 195 --DLDRQAIILNDGEVHRKSPISKDISI-------MKFKSYTLQTESANSSTIVLKANDQ 245
             D D   ++L DG  +     +   S+       + F  Y +  +  + + + L A D 
Sbjct: 176 SPDSDILQMVLFDGNRYEDVKSNDPKSVLRMQHAKVSFDKYIMNVDLRDINKVDLDATDY 235

Query: 246 NLSFLLN 252
           N   + N
Sbjct: 236 NTYKMFN 242


>gi|315138812|dbj|BAJ45971.1| conserved inner membrane protein [Escherichia coli DH1]
          Length = 366

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 132/364 (36%), Gaps = 25/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       ++ A+A+     + L +  F +  +   +   +    +  + +F+   R   
Sbjct: 122 PWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKG 181

Query: 183 T--HKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A SG    +    Q + LN G     + + +D  I  F+ Y         + 
Sbjct: 182 NARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIGHQAVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L N +           +  R+E +  +T      +  L+ +       
Sbjct: 242 DPNDTDQMDMRTLWNTD----------TDRARAELNWCITLVFTVFMMALMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  I   ++ N       P L+++   +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIV 344

Query: 355 KKKY 358
              +
Sbjct: 345 LNLW 348


>gi|332284928|ref|YP_004416839.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
 gi|330428881|gb|AEC20215.1| hypothetical protein PT7_1675 [Pusillimonas sp. T7-7]
          Length = 371

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 95/253 (37%), Gaps = 4/253 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   ++ T   N++  ++ +   T 
Sbjct: 1   MSLFKRSVVSEIMSHAGVVFSTLLVVWLSVLLVRLLGEAANGTIGANVVFGLATFSSITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++      +     +T   R +E+++   +G S    I+PVL  A+ ++I + +   +
Sbjct: 61  LPVILSVSLFIAVLTTVTRNFRESEMVVWFASGLSLKDWIRPVLRCAVPVAIIIAVLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR 179
             P     I +   + +     S +    F   +D        + N      G  I    
Sbjct: 121 ASPWAYRQISEYRQRFEQRSDLSKVTAGQFIETEDGARVFFAEEPNEPGEEMGNVIARVV 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             +   +  A+S  I  +      ++L DG  +   P   D  +M+F SY  + ES  S 
Sbjct: 181 TPEWLSVVTAESARIQTEENGDRFLVLTDGHRYDLKPDMPDFRLMEFDSYGFRLESNASE 240

Query: 237 TIVLKANDQNLSF 249
           +          S 
Sbjct: 241 SSAEAVRRMAESQ 253


>gi|300312408|ref|YP_003776500.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300075193|gb|ADJ64592.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 102/294 (34%), Gaps = 14/294 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +       +  I   + +++ +   +    +   ++ + G+     +P
Sbjct: 2   IFQRALRRELTSTAGGVFTTLFTITLTVMLIKILGQAAGGQVASQDVIALIGFQSLNYMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +    V+T   +++E+++    G S    I PVL     +   +     +  
Sbjct: 62  IILILTGFISVLLVMTRSYQDSEIVVWFACGMSLTRWIAPVLRFGWPIVALVAALSFVAT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPN-NTLQGIFIVDSRD 180
           P       +  ++ +     + +    F      +    +   + + + ++ IF+     
Sbjct: 122 PWANQQSSEYRSRFEQREDIARVSPGKFQESAAANRIFFVEGISGDASKVRNIFVNTIGA 181

Query: 181 TQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
              + +  A+ G   +D      +++N G  +  SP   D  I+ F+ Y L   + + + 
Sbjct: 182 DGKNSVVVAKEGETVIDPDGEKFVVMNQGRRYDGSPGLPDFQIVDFERYGLLIGNQSQNA 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               A +++   L            +     R E   R+      +   L++I 
Sbjct: 242 ----AGERSARAL-----QMNELVAKNDGYARGELLWRIALPFMALTLMLLAIP 286


>gi|225024725|ref|ZP_03713917.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
           23834]
 gi|224942520|gb|EEG23729.1| hypothetical protein EIKCOROL_01611 [Eikenella corrodens ATCC
           23834]
          Length = 370

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 102/283 (36%), Gaps = 14/283 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            ++   ++ + ++ +   + ++     +Q ++ +   +    + + +  +  +    ++P
Sbjct: 2   VYQRKFIKEVSQTAMGVFVLLLATLVAVQAVKLLGGAAGGKVAADAVATLVAFWTVALMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +    VL+   R++E+ +  ++G S    I+P++  A+  ++   +   ++ 
Sbjct: 62  IVLILTAYISALTVLSRYWRDSEMAVWLSSGLSLYGWIRPLMAFAVPFALLTALVSMLVM 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P   +  ++ +   +     S +   +F         +Y        +     +FI +  
Sbjct: 122 PWADARSREFAEVLKRRQDTSMVRPGVFQEFGGSTPRVYFVEKFDAGSGEAANLFIREQN 181

Query: 180 DTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                 +  A+ G      +++ + L +G  +  +P   D   + F+   L   +A    
Sbjct: 182 PQGRDTLITAERGRFAEADNKRTLELFNGRRYSGTPGMADYDEVSFERLHLVVGTAP--- 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
              K   +++     P               R E   R+T  +
Sbjct: 239 ---KLVQRDIHRRTVPTAK---LWGNTNPDLRGELMWRITMPV 275


>gi|307312964|ref|ZP_07592592.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|306907132|gb|EFN37639.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315063568|gb|ADT77895.1| conserved inner membrane protein [Escherichia coli W]
          Length = 359

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 131/358 (36%), Gaps = 25/358 (6%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +  + +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F+ Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N +           +  R+E + R+T      +  L+ +         RQ +
Sbjct: 241 QMDMRTLWNTD----------TDRARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR 288

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
                 +S+  +  ++  F  I   ++ N       P L+++   +  + L ++   +
Sbjct: 289 -----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 341


>gi|308451108|ref|XP_003088547.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
 gi|308246904|gb|EFO90856.1| hypothetical protein CRE_17759 [Caenorhabditis remanei]
          Length = 341

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 117/334 (35%), Gaps = 18/334 (5%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+++R    +      +ILL I G+ +P  L ++ P  F +    V   +  + E+ +++
Sbjct: 5   QLIKRFGQAAMGRVDPSILLSIIGFRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 64

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G SRI + + ++ L ++      +    + P      +QL +   +   F  +    F
Sbjct: 65  GSGISRIQVARLLIPLTVIYLCVQSVLMIWMSPWGIRQYEQLISTQAVRTGFDLVRPREF 124

Query: 151 FRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQT--HKIYYAQSGS----IDLDRQAIIL 203
                   I     + +   L+ IF     + +     +  A+  +     +     + L
Sbjct: 125 IS-SGAYTIYAGSLSEDRKNLKDIFFYQRAEKEGKPDVMILAKEATRIEIANETASVVDL 183

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
            +G  +   P +   S  +F+SY L+ E+   +       +      L  N N+P     
Sbjct: 184 VEGRRYEIYPGTPKYSQTEFQSYRLRLENNKEAKFESDEVEGLSFGKLLENRNDPVVA-- 241

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                 SE   RL      ++  +++   A      RQ + +      L  +  +    +
Sbjct: 242 ------SELGWRLFVPFSIIVALMLA--TALCEVSPRQGRYLKLFPALLIFASLIVALMA 293

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 +          + LF   +  L   K+K
Sbjct: 294 IRTRISKDEVGVWAYPAVLLFYAVAAALFSRKQK 327


>gi|281422565|ref|ZP_06253564.1| putative permease [Prevotella copri DSM 18205]
 gi|281403389|gb|EFB34069.1| putative permease [Prevotella copri DSM 18205]
          Length = 632

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 87/207 (42%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     +++++ +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGLLFMGTFFICQFVLMMQFLWRYIDELIGKGLTMDVMAQFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + I++    F  +N 
Sbjct: 64  VPQALPLAILLSSLMTFGNLGESSELTAIKAAGISLMQAFRSLIVITIIIMFGSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + PK    + QL    +       + E +F+    +  + + K +     L GI I    
Sbjct: 124 VGPKSNMKLAQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKDLKTGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIIL 203
           D+ +   I  A SG +     ++ ++L
Sbjct: 184 DSYEDAAIILADSGMLQSTAEKKHLVL 210


>gi|257452882|ref|ZP_05618181.1| hypothetical protein F3_07434 [Fusobacterium sp. 3_1_5R]
          Length = 361

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 139/370 (37%), Gaps = 21/370 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKY--NPNNTLQGIFI 175
           + P      ++L  + +  +    +   +EN FFR  +  Y+   K        +  + +
Sbjct: 121 VYPGSVVRNREL--RGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 178

Query: 176 VDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTES 232
           +D  +   +  ++  A+ G  D  R+  +  D  ++     + +    ++ + Y +    
Sbjct: 179 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKY-MDEPE 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S   +    Q ++ L            E+ E   SE  KR +      +   + +  
Sbjct: 238 YFISLSNIVPKQQTIAELKKAIKEGSATGNEIREIL-SELGKRYSFPFASFVVSFLGLAL 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
                     + +  + I +SI  G  ++        +  N Y  P L  +   L  +++
Sbjct: 297 G-----SHYVRGMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAA 351

Query: 349 IFLLMIKKKY 358
               M + +Y
Sbjct: 352 GLYFMRRAEY 361


>gi|269467941|gb|EEZ79676.1| permease [uncultured SUP05 cluster bacterium]
          Length = 373

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 127/365 (34%), Gaps = 29/365 (7%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R +        + I  + +  Q++  IN        ++ LL +  + +   +P++    
Sbjct: 1   MRNVLVMLSAVFIIIGLVVFGNQLVLVINQSLKEGIPVSDLLPLISFKMIRDVPLILSLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     ++ + +++E +++++ G      +  +  + I + IF+        P  +  
Sbjct: 61  LFLAIILSVSRLYKDSEAIVMNSLGLGDKQFMLFIQPIVIAIFIFILFLTTYAVPWSKHQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-----TLQGIFIVDSRDTQ 182
              +  + + A  FS+++E  F    D  +    SK           ++ IFI    +  
Sbjct: 121 RNMVMDRTENASEFSFIKEGEFQEFKDGDVVFYASKVKAGGELGQQEMEEIFIYTLSN-D 179

Query: 183 THKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQT---ESANS 235
              I  A+  +   D       + L DG  +   P   +  I+ F  Y L+    +   +
Sbjct: 180 ESIITLAKQANKYTDGITKSVYLRLKDGTRYHGFPGDTNKKILNFDLYDLKIIDGDKEKT 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              ++K   Q+   L   +               SE   RL+Q   P+   ++SI+    
Sbjct: 240 KDTIVKVEGQDTFDLFRSD----------GLKEVSELQWRLSQ---PISVLILSILGILL 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY--YIPILYLFLFCISSIFLLM 353
                +  K   +   + +              +EQ      + + ++ L  +  IF+  
Sbjct: 287 GKSSPRGGKNLGVLFGVVVFILYNNALLVAKSNLEQGSVHPIVGLWWVHLLMVLIIFIFY 346

Query: 354 IKKKY 358
           + +  
Sbjct: 347 LYRHR 351


>gi|157413956|ref|YP_001484822.1| putative permease [Prochlorococcus marinus str. MIT 9215]
 gi|157388531|gb|ABV51236.1| Permease [Prochlorococcus marinus str. MIT 9215]
          Length = 403

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 134/376 (35%), Gaps = 23/376 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    + +      I+  V  +   I  V      L + LK+  + +P+ L
Sbjct: 27  LLDRWLLGQIIPPMIFAISAFTVISLSVGVMFDLIRKVVEYGLPLFLALKVLFFSLPSFL 86

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + L+I ++   F   + +
Sbjct: 87  VLSFPMAVLLSTLLAYGKLSSNSELLALKSLGIKTSRIIAPAIALSIFMTGLTFYFNDNL 146

Query: 122 EPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDL---------------YIKISKY 164
            PK     +  L A    + +    +EN+ F R    +               +I  +++
Sbjct: 147 VPKSNKLAEATLRAGIGSSFSEEEGKENIMFSRYGSRINASTKKPTKNYSQLTHIFYAQW 206

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             N  +  + ++D       +I  A S   D    + I + G +   +P  +  +I +FK
Sbjct: 207 YKNKLMGNVTLLDFSREDLQQILKADSARFDKKNSSWIFSKGSIVSITPSGQTTNI-QFK 265

Query: 225 SYTLQTESAN--SSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
            YT          + +   AN+  L   +            + +   +    ++ T    
Sbjct: 266 EYTYPFVEGPMELAKVPKDANEMTLKQAIQAEKIYKKTGNIKEVRRIKVRIQEKFTLPFA 325

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++FGLI   +   ++ +R  K        + I       F +    ++     I   +L
Sbjct: 326 CLVFGLIG-SSLGSKSNLRSSKSQGFGLSVILILIYYVMSFIFSSLGVKGLLPPIFAAWL 384

Query: 342 FLFCISSIFLLMIKKK 357
            +       + +++K 
Sbjct: 385 PVLISLGGGIYLLRKS 400


>gi|291614865|ref|YP_003525022.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584977|gb|ADE12635.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 377

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 106/278 (38%), Gaps = 18/278 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           ++R    + L+    ++ I    Q+++ +    S   +++ +L + G+     LP++   
Sbjct: 25  LVREFASTGLLVSSILLGIVVFTQLIRLLGESVSGMLAVDGVLAMLGFTSLNYLPVLLSI 84

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L+   R++E+++   +G      I+PVL  AI +++ + +   ++ P   S
Sbjct: 85  SLFLSVLLTLSRSYRDSEMVVWFTSGIGLTRWIRPVLGYAIPVTLLIALLSLVLSPWALS 144

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
              +   +       S     +F      D ++      +    +  IF+  +++ +   
Sbjct: 145 KADEFKRRLDSRDDVSAATPGVFRESKQADRVFFLEDVDSQKKRVGNIFVQSTQNGKEG- 203

Query: 186 IYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              A+ G  +        +++ +G  +   P   D  I++F+ Y ++ E A     +   
Sbjct: 204 TMVAKEGYQETAPNGDRFLVMLNGTRYEGIPGRADFRIVEFERYAMRIEPAELREDLPHL 263

Query: 243 NDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQW 279
              +  +LL NP   N            SE   R+   
Sbjct: 264 QAFSTLYLLQNPTAWNL-----------SELEWRIGLP 290


>gi|218246939|ref|YP_002372310.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|257060003|ref|YP_003137891.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
 gi|218167417|gb|ACK66154.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8801]
 gi|256590169|gb|ACV01056.1| permease YjgP/YjgQ family protein [Cyanothece sp. PCC 8802]
          Length = 393

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 125/363 (34%), Gaps = 29/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   I   F         +   +  +   +  V+ S   + + LKI    +P 
Sbjct: 18  LSIMDRYLFIEILLPFFFGMGIFTSLGVAIGTLFDLVRRVTESGLLITVALKILVLKMPG 77

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      + ++ ++EL+ + + G S   L+ P +  ++L++   FI  +
Sbjct: 78  FIVLAFPMAMLLAALMAYSRLSSDSELIAMRSLGISIYRLVIPAILFSLLVTGLAFIVND 137

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLE-------ENLFFRLDDD-------LYIKISKYN 165
            I P           KA      S+ E       E    + +D               +N
Sbjct: 138 WIAPAATHEAAVTLEKAVSKERPSFAEQRNIIYPEYRIIQQEDGKETTVLSRLFYAENFN 197

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
               ++ + I+D      ++I  +QS + ++ +      +G ++  +P     +I++F+ 
Sbjct: 198 -GEEMEELTILDRSQEDVNQIVTSQSATWNVAQNTWDFFNGTIYIIAPDGSYRNIVRFQH 256

Query: 226 YTLQTESANSSTIVLKAN------DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
             L+   A       + N       Q   +L     +    R   +E    E   +    
Sbjct: 257 QQLKLPRAPLDLANRRQNFTEMSIAQTKEYLEVMKLSGNKERVRKVEVRIQE---KYALP 313

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              ++FGL+   A   R     R     I + L  S   ++  S++   +       P L
Sbjct: 314 FVCLVFGLVG-AAMGVRPQNTSRATSFGICVGLIFS---YYLLSFVTSSLGIWGILTPFL 369

Query: 340 YLF 342
             +
Sbjct: 370 AAW 372


>gi|189220202|ref|YP_001940842.1| permease [Methylacidiphilum infernorum V4]
 gi|189187060|gb|ACD84245.1| Predicted permease [Methylacidiphilum infernorum V4]
          Length = 405

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 133/371 (35%), Gaps = 18/371 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPT 59
           M++   ++   + ++ L++   + F   +    +   +L+ ++   L I +K+   LIP 
Sbjct: 34  MRTIYKFLFLELFKNSLITTSILTFFLVIANAFRDLSDLLVNNEVPLWISVKLLVSLIPF 93

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL    P+   +    +   M+++ EL  + + G S   ++ PV++ A+L S+  F    
Sbjct: 94  VLTFTLPWGLLVAVILLFGKMSQDRELTALKSAGISLGAIMAPVIWFALLYSVLSFAINA 153

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            I PK R   K++ +   L    S+ + N      D   +  +       L+ ++I ++ 
Sbjct: 154 YIGPKSRHAFKEIFSDVMLHNPLSFFKSNKTIDQFDGFRLYATNRI-GARLEDVYIWETD 212

Query: 180 DTQTH-KIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFK---------SYT 227
                 +   A    I+ D   Q I+L      ++     D   +K            Y 
Sbjct: 213 ADLRPLRSIRASEAEIEPDLAHQRILLTLWNARQEERNVSDPQNVKLVMPGSRATQLPYE 272

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPN--PNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           +          V K+   +    +  +    +            +EF KRL   L    F
Sbjct: 273 ISLAQLFDRLTVRKSIGLSTLDEIGRSIVAADLFGFTSNPTPVLTEFQKRLAFSLSCFTF 332

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            L+    A +  + R+   I      L +             K + N +   I++L    
Sbjct: 333 VLVGAPLAIQ--VQRKETSIGVALSLLIVLSYYVIVLLAEALKAKTNLFPELIIWLPNII 390

Query: 346 ISSIFLLMIKK 356
             S+   +I +
Sbjct: 391 FQSLGFWLIWR 401


>gi|237740743|ref|ZP_04571224.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422760|gb|EEO37807.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 359

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 119/344 (34%), Gaps = 9/344 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFIVFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--S 178
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +   
Sbjct: 121 IIPRSFIKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPQ 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             T+   +   +      +  +I+L   +        K      F    +   +     +
Sbjct: 181 DKTKFPMVLTGEEAFWKDN--SIVLKQSQFISFDENGKKNLTGTFDEKRVVL-TPYFENL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LK  D     + +   N      E +  Y+ E  ++L      V   +I        +L
Sbjct: 238 NLKIKDVEALSITDLIKNIRKVDAEEVLKYKIEIFRKLALIFSTVPLAVIGFCL----SL 293

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
              R      F+   I    +  F  I   +       P +  +
Sbjct: 294 GHHRISKKYSFVLAMIIIFAYIIFLNIGIVMASAGKLHPFIATW 337


>gi|29347827|ref|NP_811330.1| hypothetical protein BT_2417 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339729|gb|AAO77524.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 616

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 101/257 (39%), Gaps = 22/257 (8%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             F+ +    +FI  +  + + ++ +      ++++ +   Y   T++P+  P    + +
Sbjct: 1   MLFIGTFFICLFIFMMQFLWRYVDELVGKGLDMSVIAQFFFYSALTLVPISLPLAILLAS 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  L 
Sbjct: 61  LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVAVSFYFQNVVGPIAQTKLYTLI 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQS 191
              +       + E +F+    D  +KI+K N     +  + I + +D  +   I YA S
Sbjct: 121 ISMKQKSPELDIPEGVFYSEIPDYNLKIAKKNRKTGMMYDVLIYNLKDGFENAHIIYADS 180

Query: 192 GSIDLDRQA----IILNDGEV---------------HRKSPISKDISIMKFKSYTLQTES 232
           G +++        + L  G++               +R+    +  +I++F S       
Sbjct: 181 GRMEMTADKQHLWLHLYSGDLFENLRSQSMKSQNVPYRREEFREKHTIIEFDS-DFNMAD 239

Query: 233 ANSSTIVLKANDQNLSF 249
           A+  +    A D ++  
Sbjct: 240 ASIMSNTSAAKDMSMLQ 256


>gi|317059424|ref|ZP_07923909.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313685100|gb|EFS21935.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 362

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 139/370 (37%), Gaps = 21/370 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 62  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKY--NPNNTLQGIFI 175
           + P      ++L  + +  +    +   +EN FFR  +  Y+   K        +  + +
Sbjct: 122 VYPGSVVRNREL--RGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 179

Query: 176 VDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTES 232
           +D  +   +  ++  A+ G  D  R+  +  D  ++     + +    ++ + Y +    
Sbjct: 180 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKY-MDEPE 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S   +    Q ++ L            E+ E   SE  KR +      +   + +  
Sbjct: 239 YFISLSNIVPKQQTIAELKKAIKEGSATGNEIREIL-SELGKRYSFPFASFVVSFLGLAL 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
                     + +  + I +SI  G  ++        +  N Y  P L  +   L  +++
Sbjct: 298 G-----SHYVRGMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAA 352

Query: 349 IFLLMIKKKY 358
               M + +Y
Sbjct: 353 GLYFMRRAEY 362


>gi|326316899|ref|YP_004234571.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373735|gb|ADX46004.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 365

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 123/322 (38%), Gaps = 16/322 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L  M R +E++I   +G   + L+ P+L  A  + + +     +I 
Sbjct: 62  TILTLSLFVAVVGALARMYRESEMVIWFASGRGMLHLLPPLLRFAWPVILAIATLALLIW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRD 180
           P     I++L  + +       +    F    +      I +  P+N     +FI  S +
Sbjct: 122 PWANQQIQELKVQYEQRSDVDRIAPGEFQESANGARVFFIDRETPDNQQATNVFIA-SSE 180

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+S  ++        +L+DG+    +     + + +F  Y  +   A SS+ 
Sbjct: 181 HGRETVTSARSARLETQGSQRMALLSDGQRLETTLDKPGLKVSEFTEYGTRVGGAASSSS 240

Query: 239 VLKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              A   ++ + L     ++P         +R+E   R    L  + F ++ +  A    
Sbjct: 241 DDAAVKTRSTAQLFA--SSDP--------VFRAELGWRFGLALAALNFVVLGLAVASANP 290

Query: 298 LVRQRKKIHPIFISLSISFGVF 319
              +   +     +  + + + 
Sbjct: 291 RAARSTSLVFALFAFVVYYNLM 312


>gi|110807999|ref|YP_691519.1| hypothetical protein SFV_4232 [Shigella flexneri 5 str. 8401]
 gi|110617547|gb|ABF06214.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 126/344 (36%), Gaps = 25/344 (7%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           ++ I +  ++++ +          N++L + G  +P +  ++ P    +     L  +  
Sbjct: 1   MLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYT 60

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+  +I   ++     P       ++ A+A+     
Sbjct: 61  ESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGM 120

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLD 197
           + L +  F +  +   +   +    +  + +F+   R        +  A SG    +   
Sbjct: 121 AALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDG 180

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  F+ Y         +      +  ++  L N +   
Sbjct: 181 SQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD--- 237

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                   +  R+E + R+T      +  L+ +         RQ +      +S+  +  
Sbjct: 238 -------TDRARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAML 283

Query: 318 VFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
           ++  F  I   ++ N       P L+++   +  + L ++   +
Sbjct: 284 LYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 327


>gi|218264803|ref|ZP_03478497.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221776|gb|EEC94426.1| hypothetical protein PRABACTJOHN_04207 [Parabacteroides johnsonii
           DSM 18315]
          Length = 655

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 85/216 (39%), Gaps = 6/216 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S + +++P++    ++SI  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISMISIGAFFFQNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P  +  +  L    +       + E +F+       + +   +     L+ + I D  
Sbjct: 124 AMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHR 210
           +      +  A SG +          + L +GE  R
Sbjct: 184 EGFNKVSVMVADSGRLKTSADKMFLVLSLFNGESFR 219



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 210 RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN------PNPNNPNYRPE 263
                +K + +M F S   Q E+      +L     ++  +            +  YR  
Sbjct: 332 EIQKTNKPVIVMNFDSL-YQAENPGKKATILTRAKSSIENMKADYFFKAATIGDEAYR-- 388

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
            +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ I F  ++   
Sbjct: 389 -VRRHLTEWHKKFTLSFACMVFFFIG---APLGAIIRKGGLGMPVVISV-ILFIFYYIID 443

Query: 324 YIIHKIEQNPYY--IPILYLFLFCISSIFLLMIKK 356
            I  K+ ++  +     ++L    ++ + + +  K
Sbjct: 444 NIGFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478


>gi|300778309|ref|ZP_07088167.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503819|gb|EFK34959.1| permease YjgP/YjgQ family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 485

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 7/215 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI++     F      + FI  V  I  ++        S   +LK+  YL   V
Sbjct: 2   LKILDRYIIKTFFGPFFFIFSVLFFIFIVNIIWVQLGQFMGKGLSYWQILKLLFYLGVNV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + MV P    + +           EL  +   G     ++ P+L ++  L+I LF   N 
Sbjct: 62  ISMVLPLTILLASIMSFGEFGERYELAAMKAAGIPLTRVMTPLLGISTALAIMLFFFSNN 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
           I P  +   K +                 F        +K  K    N   ++G+F+   
Sbjct: 122 IIPDFQKKAKNMLFNIAQTKPAINFTPGQFIDQIPGYMVKFDKIYGENGENIEGVFVHKK 181

Query: 179 RDT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV 208
            +  +  +   A+ G            ++L +G V
Sbjct: 182 ANAYENQQSVVAEKGKFVPAANKNYLKLVLYNGYV 216


>gi|89891367|ref|ZP_01202873.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
 gi|89516398|gb|EAS19059.1| permease YjgP/YjgQ [Flavobacteria bacterium BBFL7]
          Length = 481

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 96/259 (37%), Gaps = 16/259 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL    ++FL   + I+FI  +  I   I  ++     +  + K   Y IP +
Sbjct: 1   MKILDRYILTSFIKTFLSVFIVIMFILILQAIWLYIKDLAGKDLDMITIAKFMMYTIPVI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    + +  V  +M  N E   + + G S    ++ ++ +   L +  F   N 
Sbjct: 61  VPLALPLSIILASIMVFGNMAENYEFAAMKSNGISLQRAMRSLMIVVGTLGVTSFFFANT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
           + P        L      +     +    F +L D + IK+ +   +    L  + I   
Sbjct: 121 VIPWGHFKQGNLRRNIVNSKPAMAIGVGNFNQLGD-INIKVDQKTGDRGQYLDNVLIHKK 179

Query: 179 --RDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKS 225
             +    + +  ++ G    S+  +   ++L DG  +        +   S       F +
Sbjct: 180 NPKRNGNYTVIKSKKGELKSSLKSNIIQLVLTDGNYYDDLFPENAQKRRSSPFVRSYFDT 239

Query: 226 YTLQTESANSSTIVLKAND 244
           YTL  + +  +   L   D
Sbjct: 240 YTLNVDVSGLNNTDLNKAD 258


>gi|73542369|ref|YP_296889.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
 gi|72119782|gb|AAZ62045.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
          Length = 373

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 132/368 (35%), Gaps = 27/368 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  + R +  +     L ++       +++ + L ++   S N +L + G      L 
Sbjct: 2   IFQQALRRELAYTAGAVFLVMLTFMLTSLVIRILGLAANGKASPNDVLILIGLATIGYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      + T  VLT   +++E+++  + G S   L+KPVL  A    +   +      
Sbjct: 62  ILLSATLFISTLIVLTRWYKDSEMVVWFSAGISLRDLVKPVLQFAAPFILLSLLLGLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P           + +     S +    F    +  Y+  I   + N    + +F+ ++  
Sbjct: 122 PWANQQSTLFRDRFEQRGVLSMIAAGRFIEPSNGNYVLFIEGIDGNMKYARNVFVANAEA 181

Query: 181 TQTHKIYYAQS--GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +       QS   ++    + +++ +G  +  +P   D  I++F+ Y ++ ++    + 
Sbjct: 182 NKIGVALAHQSTFETMPNGDRMVVMENGRRYAGTPGQIDYRIVEFERYAVKVDNKPPESA 241

Query: 239 VLK-ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +    ++   LL           +       E   R++  +    F +I+I  A    
Sbjct: 242 NEQPPKSRDTFDLL----------RKPTLENLGELLWRISLPILAFNFVMIAIPLA--YV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-----NPYYIPILYLFLFCISSIFLL 352
             R  +    +F  L     ++  +S +I+  +      +  +    +          LL
Sbjct: 290 NPRLGRYTPLVFAVL-----IYLTYSNLINLAQSWVRSGSIPFWLAWWPIHAVAFLAALL 344

Query: 353 MIKKKYTK 360
           M + +  +
Sbjct: 345 MFRYRQNR 352


>gi|257466753|ref|ZP_05631064.1| hypothetical protein FgonA2_04885 [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 139/370 (37%), Gaps = 21/370 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKY--NPNNTLQGIFI 175
           + P      ++L  + +  +    +   +EN FFR  +  Y+   K        +  + +
Sbjct: 121 VYPGSVVRNREL--RGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 178

Query: 176 VDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTES 232
           +D  +   +  ++  A+ G  D  R+  +  D  ++     + +    ++ + Y +    
Sbjct: 179 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKY-MDEPE 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S   +    + ++ L            E+ E   SE  KR +      +   + +  
Sbjct: 238 YFISLSNIIPKQKTIAELKKAIKEGSATGNEIREIL-SELGKRYSFPFASFVVSFLGLAL 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
                     + +  + I +SI  G  ++        +  N Y  P L  +   L  +++
Sbjct: 297 G-----SHYVRGMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAA 351

Query: 349 IFLLMIKKKY 358
               M + +Y
Sbjct: 352 GLYFMRRAEY 361


>gi|193215417|ref|YP_001996616.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088894|gb|ACF14169.1| permease YjgP/YjgQ family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 360

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 125/366 (34%), Gaps = 15/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    +   + L  V +  ++ ++++++        L ++ +   Y  P +
Sbjct: 1   MKILDRYIFREYFSTLGFAILAFVSLFILVDLIEKVDDFLDKNVELKLIAQYYLYFTPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ P    + +  V   + + TEL  +   G S   L+ P   +  ++    F     
Sbjct: 61  IKLIVPISTLLASLFVTGKLAKQTELTAMKAGGISLYRLLLPFFLVGAIIGGIDFYLSGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPN-NTLQGIFI 175
           + P+     +Q  A     L  +  + + F  ++     +  ++I  +N +  T Q + +
Sbjct: 121 VVPETTKFKEQFDATY---LGKTKWKSSSFSNIELLENPNRIVRIGYFNKDTRTCQNVSL 177

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESAN 234
            + + +       A   + D      I             +  S   K  +  L   +  
Sbjct: 178 QNYQKSHMLWRIDAAKMTYDTSLSRWIFYQAYYRDFQSGKEQFSYAAKIDTVQLVFSAKE 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  +L                 ++    ++H +++  +  +I  LI +    
Sbjct: 238 LEENNAALDQMSLDEHWKYIEARRRAGFSNVDEALVKYHIKISFPIACLIVILIGV---P 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             A  ++        ISL I F        FS + +K   +P     +  FLF    +  
Sbjct: 295 LSAEKKRSGIALEAGISLLIGFLYIILQKTFSTLGYKGAVDPILSAWIPNFLFLTVGLVF 354

Query: 352 LMIKKK 357
           L   KK
Sbjct: 355 LFKAKK 360


>gi|158521443|ref|YP_001529313.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
 gi|158510269|gb|ABW67236.1| permease YjgP/YjgQ family protein [Desulfococcus oleovorans Hxd3]
          Length = 359

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 132/365 (36%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+  I ++  +    ++ I   +   ++I+    +   L+ +     + IP +
Sbjct: 1   MTILSRYIIAEILKALAVVMAVVIVIYVAVDFFEKIDDFLGAGVPLSRMAVFFLFKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +  V   MNR  E+  + ++G    +L KP   + +   + L I   I
Sbjct: 61  VVQTAPVGVLIASLVVFGLMNRRNEVTALKSSGIGPASLFKPAAVVGVGCCVLLLIVSEI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P+  S    +  +     T S  ++N  +  DD   + I  Y P       + + D  
Sbjct: 121 VVPRTISRANYIWLQQVRQKTSSVDQKNNIWLKDDRTIVHIRHYQPREKKAFDVVLHDL- 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS---YTLQTESANSS 236
           D          +     D     L +  + ++  ++ ++ +++F+      L     +  
Sbjct: 180 DEGFRVTRRIDAARGLYDGGQWTLRN-VLDQQFDVAGNVQLVEFRERLKIELDLLPEDLD 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A++     LL+        +   + ++R + H +L+     ++ GLI        
Sbjct: 239 RAAESADEMGFVQLLDR-IRQVERQGYSVVSHRVDLHAKLSFPFVCLLMGLIGAALGIMG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
               +          +  SF V+W F      +       P++  +    +F  ++  ++
Sbjct: 298 RT--RGGITANAAYGVGASF-VYWIFHSFCISLGYGGMLPPLIAAWSANLVFGGATAAVI 354

Query: 353 MIKKK 357
           ++ ++
Sbjct: 355 LVARR 359


>gi|116070679|ref|ZP_01467948.1| possible permease [Synechococcus sp. BL107]
 gi|116066084|gb|EAU71841.1| possible permease [Synechococcus sp. BL107]
          Length = 384

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 130/364 (35%), Gaps = 22/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++L  I    L +      +   I ++  +         + + L++    IP+ L 
Sbjct: 14  LLDQWLLAEIAAPLLFAIASFTVLGLSIGVMFELARRLVDGLPILVALQLLLLNIPSFLV 73

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P      T    + ++ N+EL  + + G S   L+ P L L+I L+   F+  ++I 
Sbjct: 74  LSLPMATLFATLLAYSKLSSNSELTALRSLGVSTTRLVVPALALSIFLTGLTFVFNDVIV 133

Query: 123 PKCRSTIKQLSAKAQLALTFS----YLEENLFFRLDDDLY----------IKISKYNPNN 168
           P+  +  +    K       +     +  N F ++ D                 ++    
Sbjct: 134 PRANTQAEITLQKGLGRALATEKGKDITFNSFGKIYDPKTETSSRGLRQLFYARRFEQ-G 192

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--Y 226
            +  + ++D       +++ A+    +  +      +G+V   +P +   + + F    Y
Sbjct: 193 EMLDVTLLDFSRADYRQMWIAERAVYNEAKAMWEFFNGQVLTLNP-NGSTTRLAFDENFY 251

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
            L +     + +   AND  LS  ++     +     +     R    ++ +  +  ++F
Sbjct: 252 PLSSGPLQVAKLPDDANDMTLSQAISAEKIESDAGNIKAARKLRVRIQEKFSFPMACIVF 311

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI   +   R   R  +      +S+ +  G ++  S     +  +    P    +L  
Sbjct: 312 GLIG-SSLGARPGSRTSRS-QGFGVSILLILG-YYALSVSFSSLGVSGILPPFFAAWLPV 368

Query: 346 ISSI 349
           + S+
Sbjct: 369 LISL 372


>gi|194337384|ref|YP_002019178.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309861|gb|ACF44561.1| permease YjgP/YjgQ family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 359

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 123/346 (35%), Gaps = 8/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL    ++FL + +    +  +I ++++++        L  ++      IP++
Sbjct: 1   MKILNKYILGQFAKAFLFTSIAFACLFILINMVEKLDEFIDKKLGLWQIVHYYLLSIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V+P    + +  V   ++ + EL  I + G S   L+ P +   +L+ +F  ++   
Sbjct: 61  LLVVSPVSALLSSILVAGKLSFSGELPAIRSAGVSMRQLLTPFITGGVLILLFNLLNAGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNN-TLQGIFIVD 177
           I P   +       +          +EN    +    +  + I   +P+   +  + I +
Sbjct: 121 ISPSTFAEKNHFEQRYLKRNPAQP-QENRNIHILEPGNRMLSIGTLDPDQAEISAVSIEE 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +      A S   +      IL +      +   +   +    S  L     + S 
Sbjct: 180 FSGARLKSRTDADSMRYNQKTGEWILLNAAKRSFTGKDETFHLTPVTSVKLALSPRSLSE 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+ ++ NL                 LE    +FH ++      +I  LI +      A
Sbjct: 240 LNLQPDEMNLIRHYRYLTEKEGAGFAGLERSTVKFHNKIALPFASLIIILIGV---PLSA 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             ++      I I+L   F +F G    I          P+L  +L
Sbjct: 297 KKKRGGLASEISITLFAGF-LFMGVQKTIAIAGYQGMINPMLAAWL 341


>gi|315917902|ref|ZP_07914142.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691777|gb|EFS28612.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 362

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 139/370 (37%), Gaps = 21/370 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+ +   + F  S    + I  + Q+ + +  V+    S   +    G L+P +
Sbjct: 2   MKKLDIYMTKNFLKYFSYSLFSFLGIFVLSQVFKVLRYVNEGQLSPGQIPLFIGNLLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  +F++ L+S+ +F   + 
Sbjct: 62  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPIFMSFLISLIVFYLNDR 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKY--NPNNTLQGIFI 175
           + P      ++L  + +  +    +   +EN FFR  +  Y+   K        +  + +
Sbjct: 122 VYPGSVVRNREL--RGKEDVEEREVPKEKENAFFRNVEGRYVYYMKKINRETGIMDHVEV 179

Query: 176 VDSRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTES 232
           +D  +   +  ++  A+ G  D  R+  +  D  ++     + +    ++ + Y +    
Sbjct: 180 LDMSENFDKIERMITAKKGRYDFKRKLWVFEDAHIYYPDTDTVEARAFIQEQKY-MDEPE 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S   +    + ++ L            E+ E   SE  KR +      +   + +  
Sbjct: 239 YFISLSNIIPKQKTIAELKKAIKEGSATGNEIREIL-SELGKRYSFPFASFVVSFLGLAL 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISS 348
                     + +  + I +SI  G  ++        +  N Y  P L  +   L  +++
Sbjct: 298 G-----SHYVRGMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAA 352

Query: 349 IFLLMIKKKY 358
               M + +Y
Sbjct: 353 GLYFMRRAEY 362


>gi|33861942|ref|NP_893503.1| putative permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640310|emb|CAE19845.1| possible permease [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 400

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 136/375 (36%), Gaps = 23/375 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  I    L +      I+  V  +   I  +      L + +K+  + +P+ L
Sbjct: 25  LIDRWLIAQILPPMLFAISAFTVISLSVGVMFDLIRKIVEFGLPLFLAIKVLFFSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + ++IL++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLAYGKLSANSELLALKSLGIKTSRIIAPAIAVSILMTGLTFYFNDNL 144

Query: 122 EPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDL---------------YIKISKY 164
            P      +  L A    + +    ++N+ F R    +               +I  + +
Sbjct: 145 VPSSNKLAESTLRAGIGSSFSSEEGKDNIMFSRYGSRIESATNKPTKTNTFLTHIFYASW 204

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
             NN +QG+ ++D       +I  A+S   D +  + I +DG +       +  +I +F+
Sbjct: 205 FENNIMQGVTVLDFSRQDIQQILKAKSAVFDKENSSWIFSDGSIVSVDQGGQTTNI-QFE 263

Query: 225 --SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQWLF 281
              Y       + + +   A + +L   L            + +   +    ++ T    
Sbjct: 264 KYRYPFVEGPLDLARVPKDATEMSLKQALEAERIYKETGNLKEIRRIQVRIQEKFTLPFA 323

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++FGLI   +   ++ +R  K        + I       F +    ++     I   +L
Sbjct: 324 CLVFGLIG-SSLGSKSNLRSSKSQGFGLSVILILVYYVMSFVFSSFGVKGLLSPIIATWL 382

Query: 342 FLFCISSIFLLMIKK 356
            +       +  ++K
Sbjct: 383 PVLISMGGGIYFLRK 397


>gi|294674577|ref|YP_003575193.1| hypothetical protein PRU_1912 [Prevotella ruminicola 23]
 gi|294473775|gb|ADE83164.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 662

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 87/216 (40%), Gaps = 6/216 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + ++ +     SL ++ +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYVDELIGKGLSLEVMAQFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ +++L++   F  +N+
Sbjct: 64  MPQAFPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIIISVLMAGISFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P+      +L    +       + E +F+       I + K +     L GI I    
Sbjct: 124 VGPRANQDFYRLLLGMKQKSPELEIPEGVFYDGIPGSNIYVQKKDLNTGMLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEVHR 210
            + +   I  A SG +    +     + L +G  + 
Sbjct: 184 GSYEDQAIILADSGMMQSTAEKKHLLLTLYNGVWNE 219


>gi|225619709|ref|YP_002720966.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
 gi|225214528|gb|ACN83262.1| permease YjgP/YjgQ [Brachyspira hyodysenteriae WA1]
          Length = 417

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 139/420 (33%), Gaps = 65/420 (15%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+      FL   LF  FI  +  + + I L+ ++   L + L++  Y++P  
Sbjct: 1   MKKINKYIILETIGPFLAGILFFTFIFVIQLLPELIRLIVNNGAPLFMSLEVFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M +      ++ + E++++   G   + +  P++ L +   IF     N+
Sbjct: 61  IAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGVFTFIFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSR 179
           I  +     + L +          + +  F  + D  L I  SKY  + ++  + I D  
Sbjct: 121 IMSESNYRYRALISYMVNIKPSIAVGKLEFSDIPDMGLSIG-SKYADDTSMSNVVIYDRS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKDIS--IMKFKSYTLQT-- 230
           DT+  ++  A+ G    +        + L DG V    P    IS     F S  +    
Sbjct: 180 DTK--RVITAKYGLWKNNEANAQVVTLTLYDGVVQEM-PGYGFISNDYTVFDSMDINIVR 236

Query: 231 ESANSSTIVLKANDQNLS---FLLNPNPNNP---------------------------NY 260
             +  S+      +         +N    +                            ++
Sbjct: 237 NVSTLSSHERGLREMPAWKIMEKINQTKIDADKSVNEQINGMIVNAYNNIDTNAVSITSF 296

Query: 261 RPELLETYRSE--------------------FHKRLTQWLFPVIFGLISIVAADKRALVR 300
             E ++T  +E                    FHK ++     +   LI            
Sbjct: 297 SNEYIQTNSAELTSLREKAMEEAVPYFYYVEFHKFISIPAACLFMVLIGAPLGIVGKRSG 356

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +        I + I + +      I    + +P  I + +  +   +    LMI+  +++
Sbjct: 357 KGFGFGLSVIVVVIYYLLITAAELIAGGKKVSP-LIAMWFPNIVLAAMGSFLMIRSFFSR 415


>gi|326796829|ref|YP_004314649.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
 gi|326547593|gb|ADZ92813.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
          Length = 369

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 130/364 (35%), Gaps = 25/364 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F  Y+ + +  S     L ++ I    + +  +   +    S   L  I G+ +P+ 
Sbjct: 1   MRLF-RYLAKEVLVSTAGVTLILLLIILSGRFVNYLGRAAEGKMSFEFLFIILGFHVPSF 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M+ P  F +        +    E+ I+ ++G S++ L    L +A LL++        
Sbjct: 60  IQMILPLAFFLSLLLAYGRLYIENEMSILFSSGISKVKLTVYTLGIAGLLTLTSAFVNFW 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--- 177
           + P      +    +      F +++   F           S       +  IF+ D   
Sbjct: 120 LSPYSEYQAELARQEQDQLTAFDFIQPGRFQGRGQQTTYVASFTPEEGWMNNIFLSDFVR 179

Query: 178 --SRD-TQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
              RD         A+   ++ +     +I  DG  +  +P + +  IM+F +Y ++ E 
Sbjct: 180 KNGRDIPVQTIAKNAEQIRLETEGGLNYLIFKDGVRYEGTPGAANYRIMEFDTYAIRLED 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
               TI  KA     + L N +             Y +E H R+   +   I  +I +  
Sbjct: 240 KAPGTID-KAYAVPTTALFNSDNP----------KYIAELHWRIALVIMIPILAIIGVS- 287

Query: 293 ADKRALVRQRKKIH--PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
              +   RQ +     P  + + +  G+       + K  + P ++ + +         +
Sbjct: 288 -LSQVNPRQGRFFKMLPAILLMIVYLGLLIWGKTALEK-GKIPLHLGLWWAHGTFAIIAY 345

Query: 351 LLMI 354
           LL +
Sbjct: 346 LLFL 349


>gi|123966805|ref|YP_001011886.1| putative permease [Prochlorococcus marinus str. MIT 9515]
 gi|123201171|gb|ABM72779.1| possible permease [Prochlorococcus marinus str. MIT 9515]
          Length = 386

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 127/377 (33%), Gaps = 29/377 (7%)

Query: 3   SFELYILRCIGR-SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +I+  +    F     F +    V  +   I  +      + I LKI    +P  L
Sbjct: 10  LIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFL 69

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +       +++ N+E+L + + G +   ++ P L LA+ ++   F   + +
Sbjct: 70  VIAFPMSVLLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNL 129

Query: 122 EPKCRSTIKQLSA--------------KAQLALTFSYLEENLFFRLDDD-----LYIKIS 162
            P        L                    +   S ++ N   +  D            
Sbjct: 130 VPISNRLAADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNT-NKPIDGASHLTHIFYAR 188

Query: 163 KYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
           ++    T+  I ++D     T  +  AQ+G  D +  +   N+G++   +     +S + 
Sbjct: 189 RFLKK-TMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKI-MATEDEGSVSTII 246

Query: 223 FKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP-ELLETYRSEFHKRLTQW 279
           F +Y   L    +  + I L AN+  +S               +     +   ++++T  
Sbjct: 247 FDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLP 306

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIP 337
           +  ++F LI       +  +R  K        + I       F +    +     P++  
Sbjct: 307 MSCIVFALIG-STLGIKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAA 365

Query: 338 ILYLFLFCISSIFLLMI 354
            + + +F     FLL  
Sbjct: 366 WIPVLMFLGFGTFLLWR 382


>gi|330874292|gb|EGH08441.1| hypothetical protein Pgy4_05802 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 328

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 116/316 (36%), Gaps = 31/316 (9%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           +  I G+ +P  L ++ P    +        +   +E+ ++  TG S+  L+   +  A 
Sbjct: 1   MFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPAT 60

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN 167
           L+ + +      + P+  +    L  K      F  L    F  L D   I    + + +
Sbjct: 61  LVGLLVAWLSFSLAPQGATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSED 120

Query: 168 NT-LQGIFIV------DSRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKD 217
            + L G+FI       D        +  A+ G  ++       +IL +G  +  +P + D
Sbjct: 121 RSQLAGVFISEKRMSGDKSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAAD 180

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRL 276
             ++K+ +Y         S  +        S L+ NP P +            +E   R+
Sbjct: 181 YRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGNPAPRSV-----------AELQWRI 229

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           +  L   I  L++I     R   RQ + +      L  +  ++  +  I+  +  +    
Sbjct: 230 SLPLSVFIVTLMAIP--LSRVNPRQGRYLK-----LLPAILLYMSYLAILISVRSSLEKG 282

Query: 337 PI-LYLFLFCISSIFL 351
            + L L ++ +  I+L
Sbjct: 283 KLPLSLGMWWVHGIYL 298


>gi|325853208|ref|ZP_08171296.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|325484384|gb|EGC87307.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
          Length = 703

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 90/208 (43%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   +
Sbjct: 63  IRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMM 122

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N 
Sbjct: 123 VPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQNN 182

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  +  I QL    +       + E +F+    +  + + K +     L  I +    
Sbjct: 183 VGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMT 242

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           D+ +   I  A SG +     ++ ++LN
Sbjct: 243 DSYEDQAIILADSGMLQSTAEKKHLVLN 270


>gi|288925668|ref|ZP_06419600.1| putative permease [Prevotella buccae D17]
 gi|288337606|gb|EFC75960.1| putative permease [Prevotella buccae D17]
          Length = 638

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 87/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ +L +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++F+ +++    F  +N 
Sbjct: 64  VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+    I QL    +       + E +F+    +  + + K N     L GI I    
Sbjct: 124 IGPQANMKITQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKNVKTGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           ++ +   I  A SG +     ++ ++L 
Sbjct: 184 NSYEDAAIILADSGMLQSTAEKKHLVLT 211


>gi|282879343|ref|ZP_06288087.1| putative membrane protein [Prevotella buccalis ATCC 35310]
 gi|281298540|gb|EFA90965.1| putative membrane protein [Prevotella buccalis ATCC 35310]
          Length = 635

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 87/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +L+I +  G  F  +     F+  +  + + ++++     S+ ++ +   Y+   +
Sbjct: 4   IKKLDLFIAKQFGLLFAGTFFICQFVLMMQFLWRYVDVLIGKGLSMEVMAQFFWYMGLFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S +   + ++ +++++    F  +N 
Sbjct: 64  VPQALPLAILLASLITFGNLGESSELTAIKSAGISTMRTFRSLIVISVVVCFCSFYFQNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P     + QL            + E +F+    +  + + K + +   L GI I    
Sbjct: 124 VGPSANMKMAQLMISMSQKNPELEIPEGIFYDGIPNSNLYVQKKDMDTGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIILN 204
            + +   I  A SG +    D++ ++L 
Sbjct: 184 GSYEDQAIILADSGMLQTTADKKHLLLT 211


>gi|228470134|ref|ZP_04055043.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
 gi|228308272|gb|EEK17127.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
          Length = 683

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 87/203 (42%), Gaps = 1/203 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   ++++R      LM+ L   F+  +  + Q I+ +      + +LL++  Y    VL
Sbjct: 11  KIMYIFMVRSFLPLLLMTILICWFVVLMQFLWQHIDDLVGKGMDVGVLLEVIFYAGLYVL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++    ELL + + G     ++KP++ L   +++ LF+  +  
Sbjct: 71  PTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRG 130

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
             K    + Q+   A+ A     L + +FF   D   I +   +   +TL  + I D  +
Sbjct: 131 VQKASVRVYQILFSARYARPELELPKGIFFNGIDGYSIYVGDKDVATSTLYNVMIYDLSE 190

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL 203
            +  +I  A +G + +D   + L
Sbjct: 191 QRAPRIILADTGRLLMDDSKLYL 213



 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 11/141 (7%)

Query: 224 KSYTLQTESANSSTIV----LKANDQNLSFLLNPNPNNPNYRPELLETYRS---EFHKRL 276
             YTL T    +S        K   + L  L +       Y  +    YR    E H++ 
Sbjct: 371 THYTLDTLMDRASDQDKLMGYKQALEWLDNLSSSVQIADTYYDDAASDYRVNAQEMHRKF 430

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYY 335
           T  +  ++F     V A   A+VR+     P+ +++ I    +   ++ +  I       
Sbjct: 431 TFPVACLLFF---FVGAPLGAIVRKGGVGTPMVLAVLIFIIYYVIDTFGLKMINSGQIPV 487

Query: 336 IPILYLFLFCISSIFLLMIKK 356
              ++L    I  +   +  K
Sbjct: 488 WAGMWLSSAVILPLGAFLTYK 508


>gi|226940337|ref|YP_002795411.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
 gi|226715264|gb|ACO74402.1| permease YjgP/YjgQ [Laribacter hongkongensis HLHK9]
          Length = 357

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 133/362 (36%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +  + +   L ++ +     +L  +  +     S + +L +    +P  
Sbjct: 1   MKILTRYIGGNVIAASIFGLLALLSLFAFFDVLSELTDIGRGGYSFSDVLVVVALKLPRH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   ++ +  ++E  ++  +G S   + + +  +  L ++  F++   
Sbjct: 61  AFELMPLAVLIGTMVAMSLLAGSSEYAVMRTSGMSLGQVARILAGIGALFAVLTFVTGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P      ++   ++  A+         + + DD+ +I + +  P+NTL GI I    +
Sbjct: 121 AAPWAEQASERTKLQSTGAVISGDFRSGAWIK-DDNHFINVREMLPDNTLLGINIYTYDK 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + YA+      D     L D +  R          +  + +    +    ST++
Sbjct: 180 NDRLTDVRYARRAIYQPDGS-WQLEDIKETRIEANRTIARDLPSQRWESILQPELLSTLL 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           ++    +++ L      +     +    Y      +L   L  +   L+++         
Sbjct: 239 VEPERMSVADL-GRYIEHLATNRQNTLRYEIALWGKLFYPLACLTMALVALAF--TPVNQ 295

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ      IF+ + I    ++    F ++      +P  + +L   +F     + L+ ++
Sbjct: 296 RQSNLGSRIFVGILIGLAFYFINRLFGHLGLLYGWSPPLVTLLPTLIFLAVGTWFLVRQE 355

Query: 357 KY 358
           + 
Sbjct: 356 RR 357


>gi|315606454|ref|ZP_07881469.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251860|gb|EFU31834.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 638

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 87/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ +L +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGLLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVLAQFFWYMSLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++F+ +++    F  +N 
Sbjct: 64  VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQTFRSLIFITVVVMGCSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+    I QL    +       + E +F+    +  + + K N     L GI I    
Sbjct: 124 IGPQANMKITQLLISMKQKSPELEIPEGIFYDGIPNCNLYVQKKNVKTGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           ++ +   I  A SG +     ++ ++L 
Sbjct: 184 NSYEDAAIILADSGMLQSTAEKKHLVLT 211


>gi|302391952|ref|YP_003827772.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204029|gb|ADL12707.1| permease YjgP/YjgQ family protein [Acetohalobium arabaticum DSM
           5501]
          Length = 372

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 143/361 (39%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YIL+ +   FL+  + I  I     + +  +L+     +L+ +LK+  Y +PT+
Sbjct: 4   IKLIDKYILKEVTILFLIGLIIISIIMLSSFLFELTDLIIIRKVALSSVLKLLIYKLPTI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      T   L  ++++ E+  +     S   LI P++ L +++S   ++    
Sbjct: 64  IVRAIPMSVLFATIIGLGRLSKDNEITALRMGSISIYRLILPLIILGLIISGGNYLLNEK 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + P      + +  +  L      ++EN+FF+   +    I KYN +  T++ I I +  
Sbjct: 124 VVPFSNKRFQVIMNETVLKSRMPEIKENIFFKGTRNKLFYIGKYNESQSTVKDIVIYELD 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-NSST 237
                  I  A  G +  D +   LN+G +++ +     I+  KFK  T+  ++  N   
Sbjct: 184 SKQDYPNIIMANKGRVYKDNK-WELNEGYIYKYNNDGNLINKDKFKDITVGFKANINRFA 242

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                ++ ++  L                +   E+H +       +IF L+  + + K  
Sbjct: 243 DQQSPSEMSIKEL-KEEIEFLKKIGADPNSLLVEYHLKFAMPFSALIFILVGSILSIKGK 301

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLM 353
             +    +  I I        ++    +   + +N  + P++  +L    F I    L  
Sbjct: 302 NSKGVNILFTIII-----IFFYYLLLSLSRSLGRNEVFSPLVAAWLTNFIFIILGAILFY 356

Query: 354 I 354
           I
Sbjct: 357 I 357


>gi|257462589|ref|ZP_05626999.1| hypothetical protein FuD12_01974 [Fusobacterium sp. D12]
 gi|317060240|ref|ZP_07924725.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313685916|gb|EFS22751.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 361

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 134/369 (36%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++YI +   + F  S    + I  + QI + +  V+    S   +    G L+P +
Sbjct: 1   MKKLDIYITKNFLKYFSYSLFSFLAIFVLSQIFKVLRYVNEGQLSAGEVPLFIGNLLPGI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  N E++ +  +G     L++  + ++  +S+ +F   + 
Sbjct: 61  IINVAPLAVLLGGLISINIMASNLEIISLKTSGIRFARLVRGPILVSFFISLVVFYLNDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKY--NPNNTLQGIFI 175
           + P      ++L  + +  +    L   +EN FFR ++  Y+   K        +  + I
Sbjct: 121 VYPGSVVRNREL--RGKEDVEERELPKEKENAFFRNEEGRYVYYMKKINREKGIMDYVEI 178

Query: 176 VDSRD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +D  +   +  +I  A+ G  D +++  I  +  ++       +  +             
Sbjct: 179 LDMSEDFDKIERIITAKQGKYDFEKKIWIFKEVNLYYPETDRTESRVWIQDEKYRDEPDR 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             S   +    Q ++ L            E+ E   SE  KR +      +   + +   
Sbjct: 239 FISLSNIVPKQQTIAELKKAIKEGSATGNEIREIL-SELGKRYSFPFASFVVSFLGLALG 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF---LFCISSI 349
                    + +  + I +SI  G  ++        +  N Y  P L  +   L  +++ 
Sbjct: 298 -----SHYVRGMSILNIVISILLGYAYYLVEGAFEALGMNGYLNPFLSGWIPNLLFLAAG 352

Query: 350 FLLMIKKKY 358
              M + +Y
Sbjct: 353 LYFMRRAEY 361


>gi|237756215|ref|ZP_04584779.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691625|gb|EEP60669.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 336

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 134/355 (37%), Gaps = 26/355 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+++   ++FL+       I    Q+L   +   S   ++    K+   +  + 
Sbjct: 1   MKILDKYLIKLFFKNFLLLIGLFSLIITSSQLLHLPSFAYS--MNIIDFSKLLFLIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +
Sbjct: 59  IKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +       +     +    F +++D++ + + K    NT   I I    +
Sbjct: 119 IVPSANRERYKFLTYKVKSYILENVSPKNFSKINDNVSVYVEKKEK-NTFYNILIY---N 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +  +  A+ G    +   +IL DG +    P  K    +K++ YT   + +    I +
Sbjct: 175 ASSGYLITAKEGMFISNN--LILKDGYIQL--PSGKSFDTIKYEKYTFSLDVSYIKEISM 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +  D     LL       +    +L         R     F + F  +  +         
Sbjct: 231 Q--DFKTKDLLRLAVEEDSKALSILA-------DRF---YFAIPFMFLGFIGFLSGINTY 278

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           + K+   +  ++S+S G      Y +  IE+ P    + +++   + +IF L+ K
Sbjct: 279 RSKET-LLTFAVSLSIGYMVLNYYFLKIIEKVPV---LFFVYPIVLVAIFYLVYK 329


>gi|332535154|ref|ZP_08410963.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035424|gb|EGI71923.1| hypothetical protein PH505_cf00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 354

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 132/356 (37%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMAVCMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A         ++ ++ +   + +I I   + N  L G+ +     
Sbjct: 121 GAPEAQLHAKEMRNQAIHGGDVFNTQKGVWAKDGSN-FINIEDVDENGRLNGVHMYHFDK 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +           ++   ++  +L D      +        +  + Y  Q  +     + +
Sbjct: 180 SLELTQITKAKDALSR-KEGWLLRDVNKVIITSEKTTTEQLPEEFYPSQLTAEKLGVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L +          +   TY     ++L Q +   +  L+++          
Sbjct: 239 KPESLSFTGLWS-YLTYLEQNEQDTSTYELALWRKLMQPVSVAVMLLVALSFIFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +  I     LM K+
Sbjct: 298 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSIIFIGFATYLMNKR 353


>gi|262068070|ref|ZP_06027682.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
 gi|291378156|gb|EFE85674.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
          Length = 359

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 122/353 (34%), Gaps = 9/353 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL  +    +++     FI  +  ++  +  +     S+  +L++  + IP +
Sbjct: 1   MKIINKYILDELKGPIILAVFVFTFIFLLDIVVTMMEHIIVKGISVFDVLRLLSFYIPPI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +      T  +RN+E + + +TG S   ++KP+L +AI  +IF+   +  
Sbjct: 61  LTQTIPIGMFLGIMICFTKFSRNSESVAMVSTGMSIRAILKPILAIAIGAAIFILFLQES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--S 178
           I P+    +K +  K         L+E  F    D   I + K   +   + I   +   
Sbjct: 121 IIPRSFVKLKYVGTKIAYENPVFQLKEKTFIDNLDQYSIYVDKVESDGKAKNIIAFEKPE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             T+   +   +      +  AIIL   +        K      F    +   +     +
Sbjct: 181 DKTKFPMVLTGEEAFWKDN--AIILKQSQFISFDETGKKNLTGTFDEKRVVL-TPYFENL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            LK  D     + +   N      E +  Y+ E  ++L      V   +I        +L
Sbjct: 238 NLKIKDVEALSITDLVKNIRKVETEEVLKYKIEIFRKLALIFSTVPLAVIGFCL----SL 293

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              R      F+   I    +  F  I   +       P +  +   +   FL
Sbjct: 294 GHHRISKKYSFVLAMIIIFAYIIFLNIGIVMASAGKIHPFIATWTPNVLLYFL 346


>gi|121595375|ref|YP_987271.1| permease [Acidovorax sp. JS42]
 gi|120607455|gb|ABM43195.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 396

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 89/256 (34%), Gaps = 8/256 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y +R      L +   ++    + ++L+  ++ +S+  S+  +L ++  L+P  L 
Sbjct: 8   RLDRYAVRLFAVPLLTALATMLLATMLQRLLRLFDIAASTGASIASVLLLAADLVPHYLG 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P  F          M  ++EL  +  TG S   +  P   LA+ + +F       ++
Sbjct: 68  LALPVAFTAAIFMAAARMGDDSELDAMLATGRSIARIAAPYFILALFVCVFNLYLFGRLQ 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDT 181
           P  R                + +EEN F  +         +         G+F+ + R  
Sbjct: 128 PLARYDYHVKMDAVLQTNWDAKIEENRFIDIAHGFSFSADRVEDGGRRFIGVFM-ERRQN 186

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSY--TLQTESANS 235
              +I  A  G ++ +       + L DG   R++P     +      Y        A  
Sbjct: 187 GIEEITTAVRGQLESNPDTRKMRLKLEDGLRVRQTPDGAIATTRFVDGYVEDFSKTRAPY 246

Query: 236 STIVLKANDQNLSFLL 251
                 A ++ L  L 
Sbjct: 247 RDRGETATERTLPELW 262


>gi|94500485|ref|ZP_01307016.1| predicted Permease [Oceanobacter sp. RED65]
 gi|94427275|gb|EAT12254.1| predicted Permease [Oceanobacter sp. RED65]
          Length = 340

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 115/331 (34%), Gaps = 27/331 (8%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           ++  +N   +       +     Y  P  L ++ P  F +    V   M+   E+ ++  
Sbjct: 1   MVIHLNKAVAGIIPPEAVFYTILYNSPGFLQLILPLGFYISILLVYGRMHSENEMTVLYA 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           TG     + +  +    ++ + +      + P     + +   + Q    FS++    F 
Sbjct: 61  TGFGPKQVFRITMAPVTVMMLLIGFLSLYLAPTAADKLDRYLQEQQQESEFSFVTPGRFN 120

Query: 152 RLDDD--LYIKISKYNPNN-TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA----IILN 204
            L             + +   +Q +F+ D      + +  A+SG   +D  +    + LN
Sbjct: 121 ALGKGGEKVSYAEDLSADRKQMQQVFMAD-----GNVLLLAESGQQFVDPNSGSRYLELN 175

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
           +G+     P   +   M F  Y ++    +      +    +   LL+            
Sbjct: 176 NGKRFSGVPGDPNFEAMSFDRYAVKIAEESDVAKKARYEAVSTMELLD----------RE 225

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
              Y++  H R+  +   ++  +I I+A     +  ++ +   +  ++ +    +     
Sbjct: 226 HRVYKARLHYRIGLF---ILVPIIVIMAFPLSHVKPRQGRYGKMLPAVVLYMVYYTTLIT 282

Query: 325 IIHKIEQ--NPYYIPILYLFLFCISSIFLLM 353
               +EQ   P ++ + +L    +S   +LM
Sbjct: 283 ARKWMEQGDTPEWLGLWWLHGIFLSIGLMLM 313


>gi|261879842|ref|ZP_06006269.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333501|gb|EFA44287.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 642

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 86/207 (41%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I R  G  FL +     F+  +  + + ++ +     S+ IL +   Y+   +
Sbjct: 5   IKKLDIFITRQFGLLFLGTFFICQFVLMMQFLWRFVDDLIGKGLSMEILAQFFWYMALML 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + +++ +  F  +N 
Sbjct: 65  VPQAFPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLILITMIICLGSFYFQNN 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P     + QL    +       + E +F+    +  + + K +     L GI I    
Sbjct: 125 IGPMANMKLAQLLFSMKQKSPELEIPEGVFYDGIPNTNLYVQKKDVKTGKLYGIMIYRMT 184

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIIL 203
            + +   I  A SG +    D++ ++L
Sbjct: 185 QSYEDAAIILADSGMLQSTADKKHLLL 211


>gi|212710411|ref|ZP_03318539.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
           30120]
 gi|212686831|gb|EEB46359.1| hypothetical protein PROVALCAL_01472 [Providencia alcalifaciens DSM
           30120]
          Length = 365

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 137/361 (37%), Gaps = 27/361 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  + +  +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFVLLLIFFSQKSIDILGAAVQGNIPSNLVLPLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +      + +   +E+ ++   G  +  L+K  L LA L ++    +   + 
Sbjct: 62  LILPLSLFLGLLMTYSKLYTESEITVMHACGLGKSVLVKAALVLAALTALVAVANITWML 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSR-- 179
           P      +Q+ A A+     + + E  F    D    + I +    N  + +F+   R  
Sbjct: 122 PWSSQYQEQVLADAKANPGLAAMVEGQFKTTKDGNFVLYIGEV-KGNDFKNVFLAQLRTA 180

Query: 180 DTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + Q   +  A SG +  D   RQ ++L+ G  +  + + +D  I  F +Y    +   + 
Sbjct: 181 NEQRPSVVVADSGYMKEDEYGRQMVVLDQGTRYEGTAMLRDFRITDFVNYQAVVDHKATD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K   + +  L N +    N          +EFH RLT     V+  L+        
Sbjct: 241 VSTDKVEQKTMMQLWNEDNPEVN----------AEFHWRLTIVFSVVVMALM---VVPLS 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-------NPYYIPILYLFLFCISSI 349
            +  ++ ++  +  ++ +    F   S + +  ++         + + + YL L  I ++
Sbjct: 288 EVNPRQGRVLSMIPAMLLYLIFFLLQSTLRNSADKGDIDPKYAMWAVNLGYLLLAVILNL 347

Query: 350 F 350
           +
Sbjct: 348 W 348


>gi|282860179|ref|ZP_06269254.1| putative membrane protein [Prevotella bivia JCVIHMP010]
 gi|282587068|gb|EFB92298.1| putative membrane protein [Prevotella bivia JCVIHMP010]
          Length = 633

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 90/221 (40%), Gaps = 6/221 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +++I +  G  F  +    +F+  +  + + I+ +     ++++L +  GY+   ++
Sbjct: 5   KKLDIFIAKQFGMLFTGTFFISLFVLMMQFLWRSIDDLIGKGLTVDVLAQFFGYMALMLV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P   P    + +     ++  ++EL  I + G S     + ++   IL++I  F  +N +
Sbjct: 65  PQALPLAVLLSSLMTYGNLGESSELTAIKSAGISLFQSFRGLIATTILITILSFYFQNNV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
            P  +  I QL    +       + E +F+       + + K +     L  I +    D
Sbjct: 125 APIAQKHIYQLLISMKQKSPELEIPEGVFYDGIPQTNLYVEKKDLNTGHLYNIMVYRMTD 184

Query: 181 T-QTHKIYYAQSGSIDLD--RQAIILN--DGEVHRKSPISK 216
           + +   I  A SG +     ++ +ILN  +GE         
Sbjct: 185 SYEDQAIILADSGMLQSTAEKKHLILNLWNGEWFENMRSQG 225


>gi|297537469|ref|YP_003673238.1| permease [Methylotenera sp. 301]
 gi|297256816|gb|ADI28661.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
          Length = 356

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 143/364 (39%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+ I  + LM  L ++ +     ++Q ++ +   +  L  +L       P  
Sbjct: 1   MKILNKYLLKEIVSNVLMVMLALIAMFSFFDLIQELDALGKGSYGLGKILLFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     L  + R +EL+++  +G S   +   +L +  + +I  F+   +
Sbjct: 61  VYDVMPVAVLVGCMYSLGQLARYSELVVLRVSGLSIFDIAVLLLKIGAIFTIITFLIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P    T +++  KA  ++        L+ + D + +I + +  P+ TL  I I D  +
Sbjct: 121 VTPFSEKTAQRMRIKATDSVVAQEFRSGLWVK-DGNSFINVEEVLPDATLLNIHIFDFDK 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +      A++G      ++  L D         S  +S    ++            ++
Sbjct: 180 NAKLISTRNAKAGEFK--HESWKLKDVTDTSFDKDSVKVSQ-SLEATWHSLIRPELLNVL 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L   ++  ++ L    N+ +   +    Y      ++   L  ++  ++++        V
Sbjct: 237 LIMPEKMSAWNLYTYINHLSINKQKTTRYEVALWAKMIYPLACMVMVVLALPFG----FV 292

Query: 300 RQRKKIHPIFISLSISFGVFW-----GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +QR       I + I  GV +      F+++    +  P +  I+   +F ++ + +L  
Sbjct: 293 QQRAAGASTKIFVGIMLGVMYQILNRVFAHLGLLNDWPPLFSAIMPTIMFLMAGVAMLFY 352

Query: 355 KKKY 358
            ++ 
Sbjct: 353 VERR 356


>gi|163856081|ref|YP_001630380.1| hypothetical protein Bpet1772 [Bordetella petrii DSM 12804]
 gi|163259809|emb|CAP42110.1| putative membrane protein [Bordetella petrii]
          Length = 397

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 140/366 (38%), Gaps = 12/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  T   +++L ++ +   T 
Sbjct: 31  MSLFKRSVVAEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGTIGADVVLGLAAFSTITA 90

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP V      +     +T   R +E+++   +G S    ++PVL +AI ++  + +   +
Sbjct: 91  LPTVLAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVLRVAIPVAGLVAVLTLV 150

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F    +   +  ++     ++ L  +F  ++
Sbjct: 151 ASPWAYRQIAEYRERFEQRSDLSKVTAGQFAESGEGQRVFFAEEPTQASDELGNVFARET 210

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              + H +  A S  I+ +      ++L  G  +   P + +I ++ F  Y ++ ES + 
Sbjct: 211 -GPEWHSVMTASSARIETEPNGDRFLVLGRGHRYDLKPGTPEIRLVDFAKYGVRLESKSG 269

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI-VAAD 294
             I         S    P         +  ++  S+   R++  L  +   L++I + A 
Sbjct: 270 DPIAEARAAAERSSKARPTMQ---LVADDTDSSWSQIMWRVSMPLAALNLALLAIPLGAV 326

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              L R    +    + L     +    ++I     + P+ I +  +    ++    L++
Sbjct: 327 NPRLGRSGDLLIAGLVGLLYMNVINLSRAWISS--GKLPFGIGVWAVHAVVLALAGYLLM 384

Query: 355 KKKYTK 360
           ++   K
Sbjct: 385 RRLRVK 390


>gi|332524894|ref|ZP_08401081.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
 gi|332108190|gb|EGJ09414.1| putative transmembrane protein [Rubrivivax benzoatilyticus JA2]
          Length = 358

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 124/354 (35%), Gaps = 19/354 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R + R+F  + + I+ I   + +++ I   +    +   ++ + GY+    LP +   
Sbjct: 1   MRRELARTFGATLVVILTIVLTMFLIRTIGQAAGGVVAPQDVVLLLGYVALGHLPTMLAL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +     L  M R++E++I    G      ++PVL  +  + + +      + P    
Sbjct: 61  SLFVAVVVTLGRMYRDSEMVIWFAGGIGLSRFVRPVLRTSWPVLLVIAALLLFVWPWGNR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSRDTQTHK 185
              +L  + +     S +   +F    D      I +        + +FIV ++  +T  
Sbjct: 121 NSLELRQRYEQRSDLSRVTPGVFQTSSDGSRVFFIERDTREGADARNVFIV-AQTGETES 179

Query: 186 IYYAQSGSI--DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
           +  A+SG +  D D + ++L  G+ +     + + +   F++Y +  +   +     +  
Sbjct: 180 VTSARSGRLERDGDDRFVVLERGQRNDVDLKTGEKAQSSFETYRVLADEKRAREAERQPP 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
               +  L  +P  PN         + E   R           L+ I         R+  
Sbjct: 240 KAMDTLDLLQDPTRPN---------QGELTWRFGLLTGAGNMLLLGI--GLAATNPRRAS 288

Query: 304 KIHPIFISLSISF---GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             + +   L        +    +++          + +++   F I+   L   
Sbjct: 289 NWNLLLALLGFVVYFNLINLSQAWVASGRLGMGAALAVVHGSAFAIALGLLWWR 342


>gi|225851251|ref|YP_002731485.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
 gi|225646479|gb|ACO04665.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
          Length = 337

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 128/358 (35%), Gaps = 23/358 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI + I ++FL+       +    Q+L   +++      +    K+   +  + 
Sbjct: 1   MKILYRYITKNILKNFLVLIAVFSIVIVSSQLLHLPSVM--YHADITNFFKLLFLMNLSF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L     F F + T  +  +M  N E+  + + G ++  LIKP++ +++++     I    
Sbjct: 59  LKFQLLFAFFLSTALLGFNMRENREIYAVYSAGITKGQLIKPLVVISLIIFTVSLIVSMF 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +             ++E  FF+L D++ I   K    N  + +FI    +
Sbjct: 119 VVPYANRERAKFITLNIKRYFLDAVQEKNFFQLSDNVTIYTEKKE-GNRFENVFIY---N 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   A+      D     L  G +    P  K  +I++F+SY    +         
Sbjct: 175 RERGQTISAKEAFF--DTTTFFLKKGYIQ--IPDEKGFNILRFESYRFNIDVEYLK--KY 228

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D     LL     +   +   L         R+   LFP  F  I ++         
Sbjct: 229 SIEDYRNKDLLMIIKKSKKDKNRALSV----LTDRI---LFPFPFLFIGVLGFMVGIKT- 280

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI--SSIFLLMIKK 356
           Q+ K   I  ++ IS        Y I  I +     P +Y F+     SSI     +K
Sbjct: 281 QKGKDSVIATTVLISIVYLVLNFYFIKLIGK-GKIDPSVYAFVLLAYFSSITYYFYRK 337


>gi|302037952|ref|YP_003798274.1| putative YjgP/YjgQ family permease [Candidatus Nitrospira defluvii]
 gi|300606016|emb|CBK42349.1| putative Permease, YjgP/YjgQ family [Candidatus Nitrospira
           defluvii]
          Length = 363

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 132/366 (36%), Gaps = 11/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR   + F M    ++ I  VI   +++            +L      +P +
Sbjct: 1   MNILFRYMLREYVKIFGMCFAGLMTIYLVIDFFEKVRRFLRYDAHALDVLAYFVLKMPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    M T   +  ++R+ E+  + + G S   +  P LFL  +L++ LF   + 
Sbjct: 61  SYQIAPLAVLMATLLTIGLLSRSHEITAMRSCGISLYWITSPFLFLGTVLALVLFAFSST 120

Query: 121 IEPKCRSTIKQLSAKA--QLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD 177
           + P   +  +Q+      + A+  S      +  L     + I   +P    L+ I +  
Sbjct: 121 VIPLALAKAEQIKTTRIEKRAVPVSVKAAQPWVSLGGQTLMNIDTIDPGGAVLRKIRLY- 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                      A++       Q  +L DG + R       +S+  F++  L         
Sbjct: 180 RLSPTFELEQIAEAQRAVYSPQGWVLEDG-IRRSFRQDGTVSVNSFQTEPLPLAQIPDDF 238

Query: 238 IVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                 D     L  +    +  +    +L    ++++ R+       I  ++ I  + +
Sbjct: 239 TTWLELDSETMTLPEIRAYVDRLHLGGTILPRLLTDYYGRIAFPCVTFIMVVVGIALSLR 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
           R  VR       I  ++++ F  +W    +   + +     P+L  +   L  ++  F L
Sbjct: 299 RTGVRGSGMAMGIGQAMAVGF-FYWSTHSVAIALGRGGALAPMLAGWMANLVFLTFGFYL 357

Query: 353 MIKKKY 358
           ++K +Y
Sbjct: 358 LLKVRY 363


>gi|322418226|ref|YP_004197449.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
 gi|320124613|gb|ADW12173.1| permease YjgP/YjgQ family protein [Geobacter sp. M18]
          Length = 360

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 136/369 (36%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ +   R   +     + I  V+  +++++  + +  S   L+      IP +
Sbjct: 1   MRILTRYVAKAYLRMLGLCLGSFITIYLVVDFMEKVSRFTRAGASWKYLVLFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L S + ++EL  + + G S   +  P+L +++L+S+ + +    
Sbjct: 61  VVDSAPLAVLMATLLTLGSFSLSSELTAMRSCGVSLARISAPILAISVLMSLVVLMLGEF 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
           + PK  +  I       Q     +Y  ++  +  ++   ++ S + P+ N L+G+ + + 
Sbjct: 121 VIPKSYAQRIYIQEVLIQKKSPSTYFRQHNIWHREEGNVLRASLFEPSQNQLKGVTLWEV 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-----TLQTESA 233
           +      +    +    L  Q  +  D  V           I + + Y      L+ + A
Sbjct: 181 QPKTGLPLRRTDAALGQLGNQGWVFKDVVVREFEGAD----ISRTRKYPQLAAPLKLKPA 236

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +   +   ++   L  L N               Y ++FH R++      +   + I  A
Sbjct: 237 DLKVLGKYSDSMTLREL-NRYCKKIQAGGYDATRYITQFHSRISLPFGCAVMAFLGIPFA 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLL 352
            +              I+  I   +  GF Y II+ +  +   + +L       ++ F+ 
Sbjct: 296 LRGG--------RSSGIAFGIGLSIGVGFLYVIINSVIISVGQVGLLPPIAAAWATNFIF 347

Query: 353 MIKKKYTKI 361
           +    +  +
Sbjct: 348 LAAGGWLSL 356


>gi|218679464|ref|ZP_03527361.1| putative permease protein [Rhizobium etli CIAT 894]
          Length = 138

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 86/127 (67%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L LA ++S+F F  +N+
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSVLIRPILLLAAVVSVFSFFVDNV 130

Query: 121 IEPKCRS 127
           +EP+ ++
Sbjct: 131 VEPRAKT 137


>gi|88810478|ref|ZP_01125735.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88792108|gb|EAR23218.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 357

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 111/314 (35%), Gaps = 19/314 (6%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
            ++++ +   +S     N+L  + G      L  V P  F +     +  + R++E+  +
Sbjct: 23  NRLIRFLADAASGDIPANLLFTLLGLKALANLGTVLPASFFLAIVMAMGRLYRDSEMAAL 82

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G     L + +L LA+ L++ +     +  P    T +++ A+AQ +     +    
Sbjct: 83  AACGVGPRELCRALLLLAVPLALLVGYLSLVFGPWAEGTAQRIVAEAQQSNRLQGVRPGR 142

Query: 150 FFRLDDDLYI-KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA----IILN 204
           F  L     +  ++  +    + GIF    +D     +  A     ++D +     ++L 
Sbjct: 143 FLDLGAGSAVAYVASIDAEGIMHGIFARAEQD-GQPVLIAAARARREVDPETGARFLVLL 201

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
           +G+ ++  P  +   +++F  + L    +  +      +      L +            
Sbjct: 202 NGQRYQGVPGQRAWRVIRFGQHGLSLGGSEPAQFSAARDGLTSWQLWHSED--------- 252

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
                ++   RL+  L  ++  L ++          +  +   +  ++ +    F     
Sbjct: 253 -RAAWAQLQWRLSMPLVTLVLTLFAL---PLSKSAPRDGRYAKLLSAVLVYVLYFNLLKV 308

Query: 325 IIHKIEQNPYYIPI 338
               + Q  Y + +
Sbjct: 309 AQGLLSQGRYPVGL 322


>gi|296137009|ref|YP_003644251.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
 gi|295797131|gb|ADG31921.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
          Length = 377

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 98/280 (35%), Gaps = 7/280 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +L + R + R+F  +   +  +   + +++ +   S    S   +  + G    + L 
Sbjct: 2   LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASDGQASPQDVFLLIGLTALSYLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +      T M  ++E+ I   TG  R+ L+  VL  +  + + +        
Sbjct: 62  IVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMVSVLRFSWPILLLIAALTLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISK-YNPNNTLQGIFIVDSRD 180
           P        L  + +     S +    F           I K          IFI D   
Sbjct: 122 PWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDTS 181

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            QT  +  A+S  +     +  ++L++G  +  +P   + +I  F S  ++ ++    + 
Sbjct: 182 GQT-VLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATTGLSN 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRL 276
           V       +++L  PN N P           +  E   RL
Sbjct: 241 VADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRL 280


>gi|87121690|ref|ZP_01077577.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
 gi|86162941|gb|EAQ64219.1| hypothetical protein MED121_19119 [Marinomonas sp. MED121]
          Length = 368

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + +  S +     ++ I    + +  +   +    +   L  I G+ IP+ L ++ P 
Sbjct: 1   MAKEVLVSTMAVSFILLLIIASGRFVSYLGRAAEGKMTFEFLFIILGFHIPSFLQIIIPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F +        +    E+ I+   G S++ L    L +A++ ++        + P    
Sbjct: 61  SFFLALLLAYGRLYIENEMSILFACGISKVKLTFYTLGIALIATLVNASISLWLAPTSEY 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD------ 180
             +   A+      F +L+   F     +    +++  P    ++ +FI ++        
Sbjct: 121 QSQLAKAEQDQLTVFDFLQPGRFQGKGFNTT-YVAEITPEEGWMKDVFISNTSKVEGKNI 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  +A+   ++     ++  +G      P   D  I +F +Y +  +     +I  
Sbjct: 180 PTQTLASHAEQIQLEGGDTYLVFKNGTRFEGVPGQLDYRITQFDTYAVLLDEKGELSIE- 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA-DKRALV 299
             + +  S +   +  N            +E+  R++  +   I  +I    +       
Sbjct: 239 DPSTKPSSEIWRSDDLNEQ----------AEWQWRISLVIMIPILAIIGTSLSQVNPRQG 288

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMI 354
           R  K +  I + +     + WG + +  +  + P    + ++  LF + + FL  +
Sbjct: 289 RFFKMLPAILLMILYLGLLIWGRTSL--EKGRIPSSFGLWWVHILFGLIAAFLFSL 342


>gi|253997950|ref|YP_003050013.1| permease [Methylovorus sp. SIP3-4]
 gi|253984629|gb|ACT49486.1| permease YjgP/YjgQ family protein [Methylovorus sp. SIP3-4]
          Length = 356

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 141/373 (37%), Gaps = 32/373 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLMFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ + D   ++ + +  P++ L  I I +  D
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK-DGRSFVNVEEVMPDSELMNIHIYEFDD 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T   +    A++G  D +   +              KD+    F   T+++E    +   
Sbjct: 180 TFHLRTISDAKTGRFDGENWHL--------------KDVQQTHFLDKTVKSEFFPQAQWQ 225

Query: 240 LKANDQNLSFLLNPNP-----------NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                + L+ LL               ++ +   +    +      ++   L  ++  ++
Sbjct: 226 SLIRPELLNVLLVVPEKMSAWNLYFYIHHLSANKQKTSRHEIALWSKMVYPLASLVMVVL 285

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFC 345
           ++         R       IF  + +          F ++    + +P    ++   LF 
Sbjct: 286 ALPFGFL--QQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFL 343

Query: 346 ISSIFLLMIKKKY 358
           ++ + +L + ++ 
Sbjct: 344 LAGLTMLFMAERR 356


>gi|303235938|ref|ZP_07322541.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
 gi|302483811|gb|EFL46803.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
          Length = 650

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 107/270 (39%), Gaps = 25/270 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F  + +  + +  +  + + ++ +     S+++L +  GYL    
Sbjct: 19  IKKLDIFIAKQFGMLFAGTFVISMVVLMMQSLWKYVDKLVGKGLSIDVLAEFFGYLGLMF 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I  +G S +   + ++ +   ++I  F  +N 
Sbjct: 79  VPQALPLAILLSSLITFGNLGESSELTAIKASGISLVKSFRGLIVIISFITIGSFYFQNT 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P  +  I Q+    +       + E +F+       + + + N     L  I I    
Sbjct: 139 IAPDAQKHIFQMILSMKQKSPELEIPEGIFYNGIPQTNLYVERKNLETGHLYNIMIYRMT 198

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN--DGEV----------------HRKSPISKDI 218
           D+ +   I  A SG +     ++ ++LN  +GE                 +R+   SK  
Sbjct: 199 DSYEDQAIILADSGMLQSTAEKKHLVLNLWNGEWFENMRSQELSSSASVPYRRESFSKKK 258

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLS 248
            I+ F S        + + I   A  +++S
Sbjct: 259 LILDFDS---DFNLTDVAGISNDARTKSIS 285


>gi|148239646|ref|YP_001225033.1| permease [Synechococcus sp. WH 7803]
 gi|147848185|emb|CAK23736.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 388

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 129/365 (35%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + +++  +    L +      ++  V  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLIGELLSPLLFAIAAFTVVSLSVGVMFELVRQIVESGLPVAIAVQVLLLRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       M T    + ++ N+EL  + + G +   +I P L +A+L+S   F+  +++
Sbjct: 78  VISFAMATLMATLLAYSRLSANSELTALRSVGVTATRMIVPALIVALLMSGLTFVFNDVV 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNN 168
            P+   + +    +A      +    N+ +     +                  ++  + 
Sbjct: 138 VPRANRSAEITLRRALGKAIATEKGSNIVYSRFGRIQDPDGSSSKGLAQLFYARQF-KDG 196

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            + G+ ++D       ++  A     +  +      DG++   +P     S   F  Y  
Sbjct: 197 VMSGVTVLDFTRAGFTQMLVADRAVWNERQAKWQFFDGQILTLTPSGSTTS-ADFDQYLY 255

Query: 229 QTESANS--STIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFPVIF 285
              +A    + +   AN+  ++  L            +     +    ++ T  +  ++F
Sbjct: 256 PLSAAPIRIAQLPKDANNMTVAEALRARELLEQAGDIKEARRLQVRIQEKFTLPMACLVF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K      R +   I + L +   V++  S+    +       P+L  +   
Sbjct: 316 GLIGASLGAKPNSRTSRSQGFGISVVLIL---VYYVLSFSFSSLGVKGTLPPLLAAWSPV 372

Query: 346 ISSIF 350
           + S+ 
Sbjct: 373 LISLA 377


>gi|318041350|ref|ZP_07973306.1| permease [Synechococcus sp. CB0101]
          Length = 388

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 120/361 (33%), Gaps = 23/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        ++  V  + + +  V+ +     + +++ G  +P  L
Sbjct: 13  LMDRWLSSELLGPLLFGVAAFTAVSLSVGVVFELVRKVAEAGLPPLVAMQVLGLRLPGFL 72

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M T    + ++ ++EL  + + G     ++ P L +A L+++  F+  ++I
Sbjct: 73  VLSFPMATLMATLLAFSRLSSSSELTALRSIGVPTWRMVVPALVVAALMTVLTFVFNDVI 132

Query: 122 EPKCRSTI---------KQLSAK-------AQLALTFSYLEENLFFRLDDDLYIKISKYN 165
            P               + ++A+       ++ A   S  E+      +D   +  S+  
Sbjct: 133 VPSANLAAADTLDAALGRSVAAERGDNVVYSRYAQLTSIDEKGRERTGNDLAQLFYSRRF 192

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
               +  + ++D       ++  A++G  +  R       G +      +   +   F  
Sbjct: 193 REGKMYEVTLLDFTKAGHQQLLIAKTGIWNDARSMWEFRAGRIVDIDSANNRTTSADFDR 252

Query: 226 --YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY-RPELLETYRSEFHKRLTQWLFP 282
             Y       +   +   A    ++               +     R    ++       
Sbjct: 253 YFYPFTKAPLDVGKLPSDAAQMTVAQAWRAEALLEQAGDRKEARRLRVRIQEKFAFPAIC 312

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++FGLI      +     +  +     IS+ + FG +   S+I   +      +P    +
Sbjct: 313 LVFGLIGSSLGVRPNA--RTSRSQGFGISVLLIFGYYLM-SFIFSSLGIKGTLLPFFAAW 369

Query: 343 L 343
           +
Sbjct: 370 M 370


>gi|198276083|ref|ZP_03208614.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
 gi|198270895|gb|EDY95165.1| hypothetical protein BACPLE_02270 [Bacteroides plebeius DSM 17135]
          Length = 630

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 88/213 (41%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++L+     F  +    +FI  +  + + ++ +      +N+L +       T+
Sbjct: 4   IKKLDIFVLKSFLLLFSGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFLSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G     +I+PV+   + L +  F  +N+
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLFRIIRPVVLFCMFLGVMSFFFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I PK +  +  L    +       + E +F+   +   I + K + +   L+ + I +  
Sbjct: 124 IGPKAQKELWTLLVSMKQKSPEVDIPEGVFYSDIEGYNIYVKKKDRDTGILKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE 207
           D  +   I +A+ G ++L        + L +GE
Sbjct: 184 DGFENAHIIWAEEGKLELTADKKHLYLHLYNGE 216



 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE----LLETYRSEFHKRLTQWLFPV 283
           L   ++      L + +  LS L++ + +  +Y        +  ++S++HK++T  L  +
Sbjct: 325 LNGMTSAQKLKTLNSTETRLSSLMS-DWSMKSYMTREADNNIRRHQSDWHKKITLSLACI 383

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           IF  I    A   A++R+     P+ IS+ I    +   S      + 
Sbjct: 384 IFFFIG---APLGAIIRKGGLGMPVVISVLIFVLYYIIDSGATRVAKS 428


>gi|301028100|ref|ZP_07191378.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|312965942|ref|ZP_07780168.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|299878817|gb|EFI87028.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|312289185|gb|EFR17079.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|313646462|gb|EFS10924.1| hypothetical protein SF2457T_5377 [Shigella flexneri 2a str. 2457T]
 gi|323171707|gb|EFZ57353.1| hypothetical protein ECLT68_3916 [Escherichia coli LT-68]
 gi|323176176|gb|EFZ61768.1| hypothetical protein ECOK1180_4866 [Escherichia coli 1180]
 gi|323181995|gb|EFZ67406.1| hypothetical protein ECOK1357_4673 [Escherichia coli 1357]
 gi|323189857|gb|EFZ75135.1| hypothetical protein ECRN5871_1644 [Escherichia coli RN587/1]
 gi|327250207|gb|EGE61926.1| hypothetical protein ECSTEC7V_5011 [Escherichia coli STEC_7v]
 gi|332083262|gb|EGI88493.1| hypothetical protein SB521682_5141 [Shigella boydii 5216-82]
 gi|332083699|gb|EGI88917.1| hypothetical protein SD15574_5322 [Shigella dysenteriae 155-74]
 gi|332087092|gb|EGI92226.1| hypothetical protein SB359474_4825 [Shigella boydii 3594-74]
 gi|332748941|gb|EGJ79364.1| hypothetical protein SFK671_4980 [Shigella flexneri K-671]
 gi|332749216|gb|EGJ79637.1| hypothetical protein SF434370_4579 [Shigella flexneri 4343-70]
 gi|332749777|gb|EGJ80190.1| hypothetical protein SF274771_5047 [Shigella flexneri 2747-71]
 gi|332763114|gb|EGJ93357.1| putative transmembrane possibly involved in transport conserved
           inner membrane protein [Shigella flexneri 2930-71]
 gi|333009259|gb|EGK28715.1| hypothetical protein SFK218_0006 [Shigella flexneri K-218]
 gi|333011251|gb|EGK30665.1| hypothetical protein SFK272_0204 [Shigella flexneri K-272]
 gi|333011932|gb|EGK31317.1| hypothetical protein SFK304_5276 [Shigella flexneri K-304]
 gi|333012148|gb|EGK31530.1| hypothetical protein SFK227_5241 [Shigella flexneri K-227]
          Length = 335

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|289209274|ref|YP_003461340.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
 gi|288944905|gb|ADC72604.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
          Length = 386

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 15/284 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  E +I R +  +     + ++ +     + + +  V+     ++ L  +  +     
Sbjct: 18  LRRAERFIARELWLTQAAVSVVLLLVIIGGVLARVLRDVAEGRLPVDFLPGMVAFGAFKG 77

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +    V   M R++E+  +  +G S   L + + ++A   +I L +   +
Sbjct: 78  IVFLWPVALFLAFMLVFGRMQRDSEMTALQASGMSFAALYRALFWVAAPAAILLLVLMTM 137

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDS 178
           + P+  + I QL   A+       +    F R    D      + + +   L  +FI   
Sbjct: 138 VVPRTEAQIDQLRDLAEQRSDLVGIAPGRFLRSRVGDQVFFAERMSADREALLEVFIYRE 197

Query: 179 RDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D +      A+    D   +    ++L +G  +   P +    +++F+    Q    + 
Sbjct: 198 VDGEAQITV-AERAVPDPGAEGSGFLLLENGYRYVGEPGTASFRMLEFERLRTQITEPDP 256

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            T     N Q    L     +            R+E   RL   
Sbjct: 257 GTRRASLNAQPTPALWAQRDDPEA---------RAELEWRLAMP 291


>gi|254410176|ref|ZP_05023956.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
           7420]
 gi|196183212|gb|EDX78196.1| putative permease, YjgP/YjgQ family [Microcoleus chthonoplastes PCC
           7420]
          Length = 380

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 130/367 (35%), Gaps = 13/367 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   FL        +   +  +   +           ++LK+    +P  
Sbjct: 17  SVMDRYIITELIPPFLFGMGMFSSVGVTIGSLFDLMRRAVDEGLPATLVLKVLLLSLPQF 76

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T    + ++ ++EL+ + + G S   L+ P L L+++++   F     
Sbjct: 77  MAYAFPTSVLLATLLTYSRLSSDSELIALRSCGVSIYRLVLPALLLSLVVTGITFGFNEY 136

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLY----IKISKYNPNNTLQGIFI 175
           + P           KA      ++ E N+F+R   +D           ++    ++G+ I
Sbjct: 137 VVPASNYQATITLEKALGEEKPTFKERNIFYREYAEDKTLKRLFYAQNFD-GERMKGLTI 195

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +D      ++I  A S   ++ +      +G ++  SP +   +I++F+   LQ      
Sbjct: 196 LDWSQQSLNQIVTADSAIWNVAQSTWDFYNGTIYLVSPDASYRNIVRFEHQQLQLPRIPL 255

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL-FPVIFGLISIVAAD 294
             +  K  D +   +          R    E    +   R++Q    P    +  +V   
Sbjct: 256 -DLARKDRDYDEMNITQARERLELERQSGDEEDIRKLKIRISQKFALPFACVVFGLVGGS 314

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFL 351
                ++  K     IS+ + F  +     I   +  + Y  P++  +   L   +    
Sbjct: 315 LGNQPQRTSKATGFGISVLVIFAYYM-LMAIGDALGLSNYLPPLISAWLPNLMGFAVGGF 373

Query: 352 LMIKKKY 358
           L+I+   
Sbjct: 374 LLIRAAR 380


>gi|77361337|ref|YP_340912.1| hypothetical protein PSHAa2421 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876248|emb|CAI87470.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 355

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 133/356 (37%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ + ++  V   +  L   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIDQLKSVGRGSYDLMTAMLYTLYTIPGD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMHAAGMSRLQIISSVMKTAVFMALCMMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A         ++ ++ +  ++ +I I   + N  L G+ +     
Sbjct: 122 GVPEAQLQAKEMRNQAIHGGDVFNAQKGVWAKDGNN-FINIEDVDQNGKLNGVHMYHFDQ 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           + +         ++       +L      + S        +  + Y  Q  +     + +
Sbjct: 181 SLSLTQITKAKDALSR-ENGWLLRGVNKVKISDELITTEQVPEEFYPSQLTAEKLGVVSV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L +   +      +   TY     ++L Q +   +  L+++          
Sbjct: 240 KPESLSFTGLWS-YLDYLKQNDQDTSTYELALWRKLMQPISIAVMLLVALSFIFGPLRTV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P +I  +   +        LM K+
Sbjct: 299 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAFIGAVVPSIIFTGFAAYLMNKR 354


>gi|78779866|ref|YP_397978.1| putative permease [Prochlorococcus marinus str. MIT 9312]
 gi|78713365|gb|ABB50542.1| permease-like protein [Prochlorococcus marinus str. MIT 9312]
          Length = 400

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 130/385 (33%), Gaps = 39/385 (10%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  I    L +      I+  V  +   I  +      +   L+   Y +P+ L
Sbjct: 25  LIDRWLLGQIIPPMLFAISAFTVISLSVGVMFDLIRKIVEYGLPVLKALQALIYSLPSFL 84

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      ++ N+ELL + + G     +I P + ++I ++   F   + +
Sbjct: 85  VLSFPMAVLLSTLLSYGKLSANSELLALRSLGIKTSRIIAPAIAVSIFMTGLTFYFNDNL 144

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEEN-----LFFRLDDDL--------------YIKIS 162
            P             +  +  S+  E      +F R    +              +I  +
Sbjct: 145 VPNSNKLA---ELTLRSGVGSSFNREKSKNNIIFSRKGSRIDTNNKPTKTNTFLTHIFYA 201

Query: 163 KYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
               NNT++ + ++D       +I  A+S   D    + +  DG +       +  SI  
Sbjct: 202 SRFENNTMREVTVLDFSRVNIKQILTAKSAVFDKKNSSWVFADGSIVSTDSTGQTTSI-N 260

Query: 223 FKS--YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP----ELLETYRSEFHKRL 276
           FK   Y       + + +   A+D +L   L        Y+     + +   +    ++ 
Sbjct: 261 FKQYLYPFVEGPLDLARVPKDASDMSLKEAL---EAERIYKKIGDLKQIRKIQVRIQEKF 317

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           T     ++FGLI  +     +    R      F    I   +++  S+I           
Sbjct: 318 TLPCACLVFGLIGSI---LGSQSNLRSSKSQGFGLSVILILMYYVISFICSSFGVKGLLP 374

Query: 337 PILYLFLFCISSI---FLLMIKKKY 358
           PI+  +   I S+   F  +    Y
Sbjct: 375 PIIAAWFPVIISLSGGFYFLRNSNY 399


>gi|302345159|ref|YP_003813512.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
 gi|302149884|gb|ADK96146.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
          Length = 640

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +    +F+  +  + + ++ +     S+++L +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S I   + ++ ++I ++   F  +N 
Sbjct: 64  VPQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P     I QL    +       + E +F+       + + K +     L  I +    
Sbjct: 124 VGPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIILN 204
           D+ +   I  A SG +    D++ ++LN
Sbjct: 184 DSYEDQAIILADSGMLQSTADKKHLVLN 211


>gi|333010222|gb|EGK29655.1| hypothetical protein SFVA6_0010 [Shigella flexneri VA-6]
          Length = 335

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|317503835|ref|ZP_07961845.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665031|gb|EFV04688.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 632

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ ++ K   Y+   +
Sbjct: 4   IKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDELIGKGLSMEVMAKFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + I +S   F+ +N 
Sbjct: 64  VPQALPLAILLSSLITFGNLGESSELTAIKAAGISLMQSFRSLIVITIFISGLSFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+  + I QL    Q       + E +F+    +  + +   +     L G+ I    
Sbjct: 124 IGPEANNKIAQLMISMQQKSPELEIPEGVFYDGIPNSNLYVQHKDLKTGKLYGVMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
            + +   I  A SG +     ++ ++L 
Sbjct: 184 GSYEDQAIILADSGMLQSTAEKKHLVLT 211


>gi|288802960|ref|ZP_06408396.1| putative permease [Prevotella melaninogenica D18]
 gi|288334477|gb|EFC72916.1| putative permease [Prevotella melaninogenica D18]
          Length = 640

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +    +F+  +  + + ++ +     S+++L +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGMLFMGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S I   + ++ ++I ++   F  +N 
Sbjct: 64  VPQALPLAILLSSLISYGNLGESSELTAIKAAGISLIQSFRGLIVVSIFIAFGSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P     I QL    +       + E +F+       + + K +     L  I +    
Sbjct: 124 VGPIAHKHIAQLLISMKQKSPELEIPEGIFYDGIPQTNLYVEKKDLKTGHLYNIMVYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIILN 204
           D+ +   I  A SG +    D++ ++LN
Sbjct: 184 DSYEDQAIILADSGMLQSTADKKHLVLN 211


>gi|148265755|ref|YP_001232461.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
 gi|146399255|gb|ABQ27888.1| permease YjgP/YjgQ family protein [Geobacter uraniireducens Rf4]
          Length = 359

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 15/359 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  YI     +   +     + I  V+  L++I   + +      +       +P +
Sbjct: 1   MKIFSRYIATAYAKMLGLCLGAFIAIYLVVDFLEKIGRFARANAEWKFIALFFLTRVPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +         M T   L  ++ N+EL  +   G S   +  P+  +A  +S+        
Sbjct: 61  ICQTASMAVLMATLLTLGMLSLNSELTAMRGCGLSLARITAPIFAIAFAVSLSTLFVSEF 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
           + P+C +                ++  +   +  D++  +K   ++P    L+GI +  +
Sbjct: 121 VMPRCNTQGQYIREVLIDKKSPSTFFRQQNIWHKDENYILKARLFDPATGNLKGITLWKT 180

Query: 179 -RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESANS 235
             + +  +   A  G +  +    +  D  + R+      IS   F +    L  ++A+ 
Sbjct: 181 GTEMEPQQRIEATQGELRGND--WLFRDVVI-REMAGGNIISTKSFPALLVKLNLKAADL 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +   +++  +  L++   +           + ++ H R++    PVI   I I  A  
Sbjct: 238 KVVGKFSDNMGIRELIS-YCDKLRKGGYDPTRFLAQMHSRISLSFAPVIMAFIGIPFAM- 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  +   I + +  S G+ + +  I   I        +  L     +++  +MI
Sbjct: 296 -----RGGRSSGIALGIGTSLGIGFAYFIINSVILSFGQAGVLPPLVSAWATNLIFIMI 349


>gi|309784106|ref|ZP_07678748.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308928099|gb|EFP73564.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 335

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAIILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|323162060|gb|EFZ47932.1| hypothetical protein ECE128010_1825 [Escherichia coli E128010]
 gi|332346340|gb|AEE59674.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 335

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   I+     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|323157530|gb|EFZ43639.1| hypothetical protein ECEPECA14_0587 [Escherichia coli EPECa14]
          Length = 335

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMCTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|237740742|ref|ZP_04571223.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422759|gb|EEO37806.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 363

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 137/364 (37%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P +
Sbjct: 2   IKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEIFDYIINLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVNNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNPNNTLQGIFI 175
           I  K  + I      +   +L     +EN FF  + D YI     I++   N     I +
Sbjct: 122 IYTKSLAKINFYRKGEIDASLRLPTTKENAFFINNTDGYIYLMGNINRETGNAEKIEIVV 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN- 234
            D+  ++  +I  AQSG  D D +  +L+   ++      K+I+ +++ S   + +  N 
Sbjct: 182 YDTEISKPVEIITAQSGKYDKDNKKWMLSGVNIYNVE-TKKNITKVEYDSDRFREDPNNF 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                       +  L        N   E    Y +E  KR +      I   I +    
Sbjct: 241 IRAAAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV-- 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL 352
               VR  +    + I +   +G +   S     +  N    P +  ++       I + 
Sbjct: 298 SSKYVRGGRTTLNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIGMY 356

Query: 353 MIKK 356
            + +
Sbjct: 357 FMNR 360


>gi|153820469|ref|ZP_01973136.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
 gi|126508986|gb|EAZ71580.1| membrane protein, putative [Vibrio cholerae NCTC 8457]
          Length = 225

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 5/224 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIM 221
           +    + ++ SG    +   RQ I L DG  +   P   D  I 
Sbjct: 182 SILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMIT 225


>gi|152998004|ref|YP_001342839.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
 gi|150838928|gb|ABR72904.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
          Length = 371

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 129/359 (35%), Gaps = 26/359 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ + +  S     L ++ +    +    +  ++    +   L  I GY +P+ + 
Sbjct: 4   RLFRYLAKEVLVSTAGVTLILLLVILSGRFSFYLGRIADGKMTFEFLFVILGYHVPSFVQ 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P  F +        +    E+ ++ ++G S++ L    L +A L+ +        + 
Sbjct: 64  MILPLAFFLALLLSFGRLYIENEMSVLFSSGISKVKLAGYTLGIAFLVGLVSASINFWLA 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD---SR 179
           P       + S        F +L    F          I  +     +  IF+ D    +
Sbjct: 124 PYSEYKAAEASQAQNQLSAFDFLIPGRF-EGSGQRTTYIDSFTKEGWMNQIFLSDVVRKK 182

Query: 180 DTQTHKIYYAQSG-----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           DT      +A +      S + ++  ++  +G  +   P + +  I +F +Y ++ ES +
Sbjct: 183 DTNIPIQTFAANAEQIRISSEDNQNYLVFKNGTRYEGKPGTANYRITQFDTYAIRMESKD 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S I+     QN   L+N +              + E   R++  L   I  +I +    
Sbjct: 243 ES-IIDDPYTQNTLSLINSDKLLE----------KVELQWRISLVLIIPILAIIGLS--L 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +   RQ +    +   L     + +    I  +       +PI  L L+ I  IF+L+
Sbjct: 290 SQVNPRQGRFFKMLPAIL---LMILYIALLIWGRTSLEKGKLPIQ-LGLWWIHGIFILI 344


>gi|148242360|ref|YP_001227517.1| permease [Synechococcus sp. RCC307]
 gi|147850670|emb|CAK28164.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 403

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 111/358 (31%), Gaps = 23/358 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++   +    L        +   V  + + +  V+ +   + + +++    +P  L
Sbjct: 32  LMDRWLTGELLGPLLFGIAAFTAVTLSVGVLFELVRKVAEAGLPMGVAVQVLFLRLPGFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++  +EL  + + G +    + P L LA L+S+  F+  +++
Sbjct: 92  VLSFPMATLIATLLAYSRLSGGSELTALRSIGVATYRFVIPGLVLAGLMSVLTFVFNDVL 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-------------IKISKYNPNN 168
            P        +  K+      S    N+ +     +                  ++  + 
Sbjct: 152 VPPANRAGYVMLHKSLGRSIDSEKGGNIIYPRYGRVTDGPKDNKERLIQLFYAKEF-KDG 210

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A+       R       G +   +      +   F +Y  
Sbjct: 211 KMMDVTLIDFSRAGQKQLLSAEEAVFMEGRGTWEFRRGSIINVADRGGRNTTADFNTYYY 270

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPN----NPNYRPELLETYRSEFHKRLTQWLFPVI 284
                      L   D N+  +   N            +     R    ++ +     ++
Sbjct: 271 PLGEGPLDLASL-PKDVNVMSVAEANQALEIIEEAGDRKAARKMRVRLQEKFSFPAICLV 329

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           FGLI   +   R   R  +        L I   V++  +++   +       P L  +
Sbjct: 330 FGLIG-ASLGSRPNTRTSRSQGFGISVLLI--FVYYLLAFVFSSLGVKGTLTPFLSAW 384


>gi|312973921|ref|ZP_07788092.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|310331455|gb|EFP98711.1| conserved hypothetical protein [Escherichia coli 1827-70]
          Length = 335

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 121/334 (36%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F++Y         +      +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|325499819|gb|EGC97678.1| hypothetical protein ECD227_3916 [Escherichia fergusonii ECD227]
          Length = 335

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 110/326 (33%), Gaps = 17/326 (5%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+   I   I+     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKGVLVKAAMILALFTGIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSAVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  +++ L N + +           
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMTTLWNTDSD----------R 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + RLT      +  L+ +         RQ + +  +   L          S   +
Sbjct: 231 ARAELNWRLTLIFTVFMMALMVVP--LSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSN 288

Query: 328 KIEQNPYYIPILYLFLFCISSIFLLM 353
             +        ++       ++ + +
Sbjct: 289 GGKGKLDPTLWMWTVNLIYLALAIAL 314


>gi|302342717|ref|YP_003807246.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
 gi|301639330|gb|ADK84652.1| permease YjgP/YjgQ family protein [Desulfarculus baarsii DSM 2075]
          Length = 359

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 129/364 (35%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+   LY+     + F    +  V +  +   +++++    +    + +L      +P +
Sbjct: 1   MRILGLYVAGEFLKVFGFLLVAFVSLFTLFDFIEKVDNFHEALVPASTMLMYFLLQVPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P    + T   L  M++  E + I ++G S +    P++ LA+ +++   +   +
Sbjct: 61  ISLLSPLAVLLGTIIALGLMSKRGETIAIKSSGVSVMRFTLPIVLLALTITLSTALINEM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
             P  ++    +          S      F+   +     I  ++P    L  +      
Sbjct: 121 ALPGTKARTNHIWNVMVEKRPSSAYSHEKFWFKGNGSIYHIGLFDPLGQVLSNVVYYRFD 180

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSST 237
           D     +   A+  +    +    L    +H++       S + F        E     +
Sbjct: 181 DHFNLAERIDARRATYIGGKWLFFL---GLHQQRLPQGGYSAVVFDELEKNLPERPEDFS 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            + K +++     L+ +    +        Y+ + H +++     VI  LI I  A  R 
Sbjct: 238 RLSKPSEEMGLAELSDHVGKVDAEGYDTRRYQVDMHCKISYPFICVIMALIGIPLALFRE 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLM 353
             R R     I + + ++   +  F Y            P++  +L    F ++ + ++ 
Sbjct: 298 --RGRALAPGIVVGMLVALVYWISFGYARSIFGYGGVLPPMMAAWLPNAMFALAGVGMIT 355

Query: 354 IKKK 357
             ++
Sbjct: 356 SVRQ 359


>gi|323166625|gb|EFZ52384.1| hypothetical protein SS53G_3091 [Shigella sonnei 53G]
          Length = 335

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 119/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y                +  ++  L N +           + 
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVVLDPNDTDQMDMRTLWNTD----------TDR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|187250533|ref|YP_001875015.1| permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
 gi|186970693|gb|ACC97678.1| Permease YjgP/YjgQ family protein [Elusimicrobium minutum Pei191]
          Length = 370

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 131/365 (35%), Gaps = 10/365 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI       F  +      +  +    + I  +++   +  ++LK     +P+ L
Sbjct: 11  KILYRYIASKFWMPFFFAMAMFCILVLLGDFFENIKSITNGYATFRLILKYCFLNLPSWL 70

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ P    +    V++ M    E      +G     L  P++   IL+     + +  +
Sbjct: 71  GMLLPVACLLAVLFVISDMVAGGEWTACLASGYRPGQLFVPLIACVILVVFLNSLMQEFV 130

Query: 122 EPKCRSTIKQL-SAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFI-VD 177
            P+     +Q+   + +    F + +E N+  R++    +        + T+ GI     
Sbjct: 131 YPRVSQKAEQVFRRQLRGDKDFQAGIERNITLRINPRQMLLAQTLQSGSLTMYGITTEFY 190

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + + +  K   A++   D D +     DG + R       I    F +     + A    
Sbjct: 191 NENWEIEKQIVARNLVWDKDEKIWFYKDGVI-RYFEEGITIREEVFDTLESDLKVAPKDI 249

Query: 238 IVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            V    ++ +S   L    +       +    ++  H +L   +  +I  LI +  A   
Sbjct: 250 SVGDIEEKAISVRELLKKISFLGRSGLVTYKEKTNLHNKLAMPVMTIIMCLIGMPFA--- 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             VR+R K+  I  +L +SF  FW    +     QN    P +  +   + +   + I+ 
Sbjct: 307 VTVRKRGKVINIIAALVMSFS-FWWVMTMASTAGQNGILSPFIAGWGIVVLAAAAVFIEF 365

Query: 357 KYTKI 361
           K  KI
Sbjct: 366 KIMKI 370


>gi|313200016|ref|YP_004038674.1| permease [Methylovorus sp. MP688]
 gi|312439332|gb|ADQ83438.1| permease YjgP/YjgQ family protein [Methylovorus sp. MP688]
          Length = 356

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 141/373 (37%), Gaps = 32/373 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  + ++ +     ++Q +  +   T  LN +L       P  
Sbjct: 1   MKLLNRYLTQEIVSSIMLIMVALLAMFSFFDLIQELESIGKGTYGLNKVLVFVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L  ++R++EL+I+  +G S  T+ + +L + ++ ++  F     
Sbjct: 61  VYEVVPVAVLVGTMYALGQLSRHSELIILRVSGISIATIARSLLKVGLIFAVITFFVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P    T ++L  +A  ++        L+ + D   ++ + +  P++ L  I I +  D
Sbjct: 121 VTPYSEKTAQRLRIQATDSVVAQDFRSGLWVK-DGRSFVNVEEVMPDSGLMNIHIYEFDD 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +   +    A++G  D +   +              KD+    F   T+++E    +   
Sbjct: 180 SFHLRTISDAKTGRFDGENWHL--------------KDVQQTHFLDKTVKSEFFPQAQWQ 225

Query: 240 LKANDQNLSFLLNPNP-----------NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                + L+ LL               ++ +   +    +      ++   L  ++  ++
Sbjct: 226 SLIRPELLNVLLVVPEKMSAWNLYFYIHHLSANKQKTSRHEIALWSKMVYPLASLVMVVL 285

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFC 345
           ++         R       IF  + +          F ++    + +P    ++   LF 
Sbjct: 286 ALPFGFL--QQRSGGASAKIFAGIMLGIVYQVLNRVFVHLGLLNDWSPLMSAVVPTLLFL 343

Query: 346 ISSIFLLMIKKKY 358
           ++ + +L + ++ 
Sbjct: 344 LAGLTMLFMAERR 356


>gi|282880145|ref|ZP_06288865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
 gi|281306018|gb|EFA98058.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
          Length = 635

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 86/207 (41%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++  +  G  F  +     F+  +  + + ++ +     S+ I+ +   Y+   +
Sbjct: 4   IKKLDIFTAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGKGLSMEIMAQFFWYMGLFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  N+EL  I ++G S     +P++ L I +S   F  +N 
Sbjct: 64  VPQALPLAVLLSSLITFGNLGENSELTAIKSSGISMFRTFQPLISLTIFISFSSFYFQNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + PK    + QL    +       + E +F+    +  + + K +     L GI I    
Sbjct: 124 VGPKANMKLAQLILSMKQKSPELEIPEGIFYDGIPNSNLYVQKKDVETGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIIL 203
            + +   I  A SG +    D++ ++L
Sbjct: 184 GSYEDQAIILADSGMLQSTADKKHLLL 210


>gi|240948566|ref|ZP_04752939.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
 gi|240297074|gb|EER47645.1| hypothetical protein AM305_06766 [Actinobacillus minor NM305]
          Length = 309

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 91/300 (30%), Gaps = 19/300 (6%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIV-- 176
            + P   +   +L A+A+    FS L    F        + I   N   N L  I++   
Sbjct: 61  WLTPWAINKQSELLAEAKANPRFSALSAGQFMT-AGGYVLFIDNINYDQNKLNDIYVFQP 119

Query: 177 DSRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D +      +  A SG +       Q + L +   +  +    D  I  F++YT      
Sbjct: 120 DQQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYLGHQ 179

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  +            L+           +  E  R+E   R        I  L+++   
Sbjct: 180 DVDSDEK---------LVQRADWAKLVADKSPEA-RAELQWRFALIFATPIMALLAVP-- 227

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 RQ +    +   L          +              ++ +       + ++M
Sbjct: 228 MSSVNPRQGRFAKLLPALLLYLIYFLLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287


>gi|121594280|ref|YP_986176.1| permease [Acidovorax sp. JS42]
 gi|120606360|gb|ABM42100.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 363

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 126/331 (38%), Gaps = 20/331 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + R+F  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARTFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+   +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P     I++L  + +       +    F    +      I K  P+ N+   +FI  + +
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATN-E 180

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-TLQTESANSST 237
                +  AQS    I    +  +L++G+          + + +F  Y TL    + +  
Sbjct: 181 PNRETVTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  ++   L++          +    +++E   R+   L  + F +  +  A    
Sbjct: 241 EAASIKTRDTWELVS----------DPQPRHQAELGWRIGMALAALNFVV--LGLAVAVV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
             R  +    +F     +F V++    +   
Sbjct: 289 NPRAGRSTSLVFALF--AFVVYYNLMTVGQT 317


>gi|325268898|ref|ZP_08135523.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
           16608]
 gi|324988870|gb|EGC20828.1| hypothetical protein HMPREF9141_0732 [Prevotella multiformis DSM
           16608]
          Length = 640

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 90/208 (43%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   +
Sbjct: 4   IRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSVDVLGQFFWYMSLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N 
Sbjct: 64  VPQALPLAILLSSLISYGNLGESSELTAIRSAGISLVQSFRGLIVISVLIACGSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  +  I QL    +       + E +F+    +  + + K +     L  I +    
Sbjct: 124 VGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           D+ +   I  A SG +     ++ ++LN
Sbjct: 184 DSYEDQAIILADSGMLQSTAEKKHLVLN 211


>gi|222110917|ref|YP_002553181.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
 gi|221730361|gb|ACM33181.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
          Length = 363

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 125/331 (37%), Gaps = 20/331 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + R+F  + + +V +   + +++ +   S  + + + ++ + G+ +   LP
Sbjct: 2   LFDSSIRKELARTFGATLVVLVTVVMTMMLIRTLGQASRGSVNPSDVMLVMGFTVLGQLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ M R++E++I  + G   ++L+ P+   +  + + +     ++ 
Sbjct: 62  TILSLSLFVTVVGALSRMYRDSEMVIWFSAGRGLMSLLAPLFRFSWPVMLTIAALSLVVW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P     I++L  + +       +    F    +      I K  P+ N+   +FI  + +
Sbjct: 122 PWANRQIQELKTQYEQRSDVDRIAPGEFQESSNGSRVFFIDKDAPDANSASNVFIATN-E 180

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-TLQTESANSST 237
                +  AQS    I    +  +L++G+          + + +F  Y TL    + +  
Sbjct: 181 PNRETVTSAQSARLEIRNGERMALLSNGQRLETLRDKPGLRVSEFAEYGTLVGGGSQNDP 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                  ++   L++          +    +++E   R+   L  + F    +  A    
Sbjct: 241 EAASIKTRDTWELVS----------DPQPRHQAELGWRIGMALAALNFV--VLGLAVAVV 288

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
             R  +    +F     +F V++    +   
Sbjct: 289 NPRAGRSTSLVFALF--AFVVYYNLMTVGQT 317


>gi|188996313|ref|YP_001930564.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931380|gb|ACD66010.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 336

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 131/355 (36%), Gaps = 26/355 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+++   ++F++       I    Q+L   +   S   ++    K+   +  + 
Sbjct: 1   MKILDKYLIKLFFKNFILLIGLFSLIITSSQLLHLPSFAYS--MNIIDFSKLLFLIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F F +    V  S+    E+  + + G S+  L+KPV  + ++  I  F+   +
Sbjct: 59  IKYQLLFAFFISWLLVGISLRDKNEIYAVYSAGISKKQLLKPVFIMTVIFVIIAFVFSTV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +       +     +    F +++D++ + + K    NT   I I    +
Sbjct: 119 IVPSANRERYKFLTYKVKSYILENVSPKNFSKINDNVSVYVEKKEK-NTFYNILIY---N 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ G    +   +IL DG +    P  K    +K++ YT   + +    I +
Sbjct: 175 ASNGYLITAKEGMFISNN--LILKDGYIQL--PSEKSFDTIKYEKYTFSLDVSYIKEISM 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +   +    L      +      L + +            F + F  +  +         
Sbjct: 231 QDF-RTKDLLKLAVEEDSKVLSILADRFY-----------FVIPFMFLGFIGFLSGINTY 278

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           + K+   +  ++S+S G      Y +  IE+ P    + +++   +  IF L+ K
Sbjct: 279 RSKET-LLTFAVSLSIGYMVLNYYFLKIIEKMPA---LFFVYPILLIVIFYLVYK 329


>gi|325287934|ref|YP_004263724.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
 gi|324323388|gb|ADY30853.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
          Length = 478

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 16/234 (6%)

Query: 25  FIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
            + ++ Q +   I  ++     L I+ K   Y +P+++  V P    + +     ++  N
Sbjct: 1   MLIFIFQTIWLYIGDLAGKGLDLEIIGKFIFYFMPSLIDKVLPLTVVLSSILTFGTLAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    ++ ++   + L +  F   N + P     I  L          +
Sbjct: 61  YEFAAMKASGISLQRAMRTIIIFVLFLGVVAFFFANNVAPAAAHKIYNLKRNIGNVKPAA 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRDTQTHKIYY-AQSGSI----DL 196
            + E +F    + + IK+ K +  N   L+ I I    +     +   A+ G +    D 
Sbjct: 121 IIAEGIFSD-FEGMNIKVDKKSGENDRFLENIIIHKKSNNVISNVVIKAKKGELVSSEDS 179

Query: 197 DRQAIILNDGEVHRKSPISKD-------ISIMKFKSYTLQTESANSSTIVLKAN 243
           D   +IL DG  +                +  KF  Y +  +  + S   L+ +
Sbjct: 180 DIVQLILKDGNYYEDVQSKNSKTKLKVPFAKAKFNEYIINIQLTDMSDQDLEED 233


>gi|260450919|gb|ACX41341.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
          Length = 359

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 130/358 (36%), Gaps = 25/358 (6%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+  +I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +  + +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F+ Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNQGTRFEGTAMLRDFRITDFQDYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
             ++  L N +           +  R+E +  +T      +  L+ +         RQ +
Sbjct: 241 QMDMRTLWNTD----------TDRARAELNWCITLVFTVFMMALMVVP--LSVVNPRQGR 288

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
                 +S+  +  ++  F  I   ++ N       P L+++   +  + L ++   +
Sbjct: 289 -----VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 341


>gi|294341186|emb|CAZ89587.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
          Length = 377

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 98/280 (35%), Gaps = 7/280 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +L + R + R+F  +   +  +   + +++ +   S    S   +  + G    + L 
Sbjct: 2   LLDLTLRREMSRNFGGAFTVLFTVVITLMLIRILGQASDGQASPQDVFLLIGLTALSYLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V      +      T M  ++E+ I   TG  R+ L+  VL  +  + + +        
Sbjct: 62  IVITLSLFLAVLLTFTRMWLDSEMTIWRTTGVGRLRLMISVLRFSWPILLLIAALTLFAW 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISK-YNPNNTLQGIFIVDSRD 180
           P        L  + +     S +    F           I K          IFI D   
Sbjct: 122 PWANQQSTALRIRFEQRSDISRVAPGQFRESASGKRVFFIDKGAQAGGVAHDIFIRDDTS 181

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            QT  +  A+S  +     +  ++L++G  +  +P   + +I  F S  ++ ++    + 
Sbjct: 182 GQT-VLITARSAQVQRIDGQPFLVLSNGNRYAHTPGQANYTITSFDSLDMRLDATIGLSN 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLE--TYRSEFHKRL 276
           V       +++L  PN N P           +  E   RL
Sbjct: 241 VADNKTGPVNWLTQPNRNVPTEYLFNPAIPNWLGELSWRL 280


>gi|312885912|ref|ZP_07745544.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311301719|gb|EFQ78756.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 463

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 80/210 (38%), Gaps = 16/210 (7%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +F+  ++ + + I+ +         +L++  Y   T + M  P    + +     ++  N
Sbjct: 1   MFVLLMLFLWKYIDDLIGKGFEWYTILELMMYASATNVAMALPLSVLLSSIMTYGTLGEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            EL+ I + G S    + P++ +   LS+  F   + + P        L   A+   + S
Sbjct: 61  YELVAIKSAGISLSRALYPMVIVVAALSVAAFAFSDYMLPVANLKFYSLLYDARKQKSAS 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTH-----------KIYYAQS 191
            ++E +F        +++ K +P+   L G+ I +     T             + +A+ 
Sbjct: 121 LIKEGVFNNSFPGYSVRVQKKDPDGQLLHGVMIYERAGGSTSMQPTGASSSGNNVIFAKE 180

Query: 192 GSI----DLDRQAIILNDGEVHRKSPISKD 217
           G +    D     I L DG  + +   S  
Sbjct: 181 GRMFKSFDNAFLIIKLKDGVRYEEDASSNG 210



 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           ++L  ++ P  +      ++L  Y  E+ K+ T     ++  LI    A   A++R+   
Sbjct: 327 RSLKDIVKPKGDTYIENDKILRRYLIEYQKKFTLSAACLVLFLIG---APLGAIIRKGGL 383

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
             P+ IS+   F +++  S I  K  ++    P+L  ++ +F ++ I L +
Sbjct: 384 GLPVVISVVF-FLIYYIISTIGEKSAKDGNISPVLGTWVAIFVLAPIGLFL 433


>gi|315125734|ref|YP_004067737.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
 gi|315014248|gb|ADT67586.1| hypothetical protein PSM_A0636 [Pseudoalteromonas sp. SM9913]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 131/356 (36%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + + +V I+ +I+ ++++  V   +  +   +  + Y IP  
Sbjct: 2   MKTLDWYLGRSILQTTGFALMVLVGISTLIKFIEQLKSVGRGSYDIMTAMLYTIYSIPDD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  AI +++ +      
Sbjct: 62  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAIFMALCVMALGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +   K++  +A         ++ ++ +  ++ +I I   + N  L+G+ +    D
Sbjct: 122 GAPAAQLHAKEMRNQAIHGGDVFNAQKGVWAKDANN-FINIEDVDQNGMLRGVNMYHF-D 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                    ++          +L D      S        +  + Y  Q  +     + +
Sbjct: 180 KSLSLTQITKAKEAVGRDSGWLLRDVNKVMISEELITTEQVSEEFYPSQLTAEKLGVVSV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + S L +          +   TY     ++L Q +   +  L+++          
Sbjct: 240 KPESLSFSGLWS-YLAYLQQNEQDTSTYDLALWRKLMQPVSIAVMLLVALSFIFGPLRTV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +        LM K+
Sbjct: 299 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSILFTGFAAYLMNKR 354


>gi|170766592|ref|ZP_02901045.1| putative permease [Escherichia albertii TW07627]
 gi|170124030|gb|EDS92961.1| putative permease [Escherichia albertii TW07627]
          Length = 335

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 119/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +          N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +             
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTD----------TTR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLIFNVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLVLAIVLNLW 317


>gi|327314112|ref|YP_004329549.1| permease [Prevotella denticola F0289]
 gi|326944181|gb|AEA20066.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
          Length = 645

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 90/208 (43%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  +++I R  G  F  +    +F+  +  + + ++ +     S+++L +   Y+   +
Sbjct: 5   IRKLDIFIARQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMDVLGQFFWYMSLMM 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S +   + ++ +++L++   F  +N 
Sbjct: 65  VPQALPLAILLSSLISYGNLGESSELTAIKSAGISLVQSFRGLIVISVLIACGSFYFQNN 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P  +  I QL    +       + E +F+    +  + + K +     L  I +    
Sbjct: 125 VGPSAQKHIAQLLISMKQKSPELEIPEGIFYDGIPNTNLYVEKKDLKTGHLYNIMVYRMT 184

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           D+ +   I  A SG +     ++ ++LN
Sbjct: 185 DSYEDQAIILADSGMLQSTAEKKHLVLN 212


>gi|325300373|ref|YP_004260290.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
 gi|324319926|gb|ADY37817.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
          Length = 636

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 96/246 (39%), Gaps = 21/246 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F  +    +FI  +  + + ++ +      +NIL +   Y   T+
Sbjct: 4   IKKLDIFILKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINILAQFFFYSGLTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + ++ PV+     L +  FI +N 
Sbjct: 64  IPISLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMCPVILFCAFLGLMSFIFQNE 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ +  +  L    +       + E +F+   D   I +   +     L+ + I +  
Sbjct: 124 IGPRAQKKLWTLLVSMKQKSPEVDIPEGVFYSEIDGYNIYVKHKDRETGMLKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
           D  +   I +A+ G +++        + L +GE                +R+    +  +
Sbjct: 184 DGFENAHIIWAEEGKLEMTADKKHLYLHLYNGEQFENLKSQSVISRNVPYRRESFKEKHT 243

Query: 220 IMKFKS 225
           +++F S
Sbjct: 244 LIQFDS 249


>gi|294782105|ref|ZP_06747431.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
 gi|294480746|gb|EFG28521.1| permease, YjgP/YjgQ family [Fusobacterium sp. 1_1_41FAA]
          Length = 363

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 132/366 (36%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P +
Sbjct: 2   IKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLEGGEIFDYIVNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFIISLFVFFVNNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNPNNTLQGIFI 175
           I  K  + I      +   +L     +EN FF  + D YI     I++         I I
Sbjct: 122 IYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNTDGYIYLMGNINRETGEAEKIEIVI 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D+  ++  +I  AQSG  D D +  +L+   ++          +    +Y       + 
Sbjct: 182 YDTEISKPVEIITAQSGKYDKDNKKWLLSGVNIYNVETKKTITKV----AYDSDRFGEDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +  A +      +         +    E    Y +E  KR +      I   I +  
Sbjct: 238 NNFIRAAAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSV 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTLNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 MYFMNR 360


>gi|71891828|ref|YP_277557.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795934|gb|AAZ40685.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 373

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 145/365 (39%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F  YIL+ I R+ L+    +  + +  ++++ ++LV  S  S+ ++    G  +P    
Sbjct: 2   IFTKYILKEIFRNQLIILTLLFLVCFCQKLIKMLSLVIDSGISIYLIFLCLGLNMPESGK 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   +        ++ + E++ + +    +   I+ + F + +++    I+ + + 
Sbjct: 62  LLIPFSVFLSVLVTFYRLHAHNEIIAMYSCAVDKYIFIRSIFFFSGIVATCTMINISWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS---R 179
           P C S   +L  K +  +    L E  F  L     I  S     N L+ +F+  +   +
Sbjct: 122 PYCSSYQSKLLYKIKENINLVILSEKKFQPLATKYLILFSDSIQGNKLKNVFLSKTNPDK 181

Query: 180 DTQTHKIYYAQSGSIDLDRQA---IILNDG---EVHRKSPISKDISIMKFKSYTLQTESA 233
           D     I  +  GS+  +      IIL  G   E++ K  + +D+ I  F  Y +     
Sbjct: 182 DNSMFIIITSDQGSVCRNPDGSRLIILKKGTYYEIYNKCELCQDVLITDFSQYQMLI--- 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           NS+       ++++  +                  R+E H RLT  +   +  +I+ +  
Sbjct: 239 NSTIKTFYEKNESVDHMFMH-----QLWRSNKSEMRAELHWRLTLLVSIFLMPMITTLLI 293

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              +       +  +F      + +F+ F  ++          PI+++++     + +++
Sbjct: 294 TVVSYNYLINLLVTVF-----LYIIFFIFHILLRSCVLLDNINPIVWMWVINSIYLSIVL 348

Query: 354 IKKKY 358
           +   +
Sbjct: 349 LLNSW 353


>gi|294645356|ref|ZP_06723067.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|292639294|gb|EFF57601.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
          Length = 616

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             F+ +    +FI  +  + + ++ +      ++++ +   Y   T++P+  P    + +
Sbjct: 1   MLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLLAS 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  L 
Sbjct: 61  LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLI 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQS 191
              +       + E +F+    D  +K++K N     L  + I   +D  +  +I YA S
Sbjct: 121 LSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYSMKDGFEKARIIYADS 180

Query: 192 GSID--LDRQAIILN 204
           G ++   D+Q + L+
Sbjct: 181 GRLEMTADKQHLWLH 195



 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +  +++E+HK++T  L  ++F  I    A    ++R+     P+ +S+ + F +++    
Sbjct: 350 IRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDN 405

Query: 325 IIHKIEQNPYYIPILYLFLFCISSI 349
             +K+ ++  +I  +++ ++  S++
Sbjct: 406 TGYKMARDGKWI--VWMGMWTSSAV 428


>gi|260592583|ref|ZP_05858041.1| putative permease [Prevotella veroralis F0319]
 gi|260535353|gb|EEX17970.1| putative permease [Prevotella veroralis F0319]
          Length = 644

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F  +    +F+  +  + + ++ +     S+ +L +   Y+   +
Sbjct: 4   IKKLDIFIAKQFGMLFAGTFFISLFVLMMQFLWRYVDDLIGKGLSMEVLGQFFWYMSLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S I   + ++ ++++++   F  +N 
Sbjct: 64  VPQALPLAILLSSLIAYGNLGESSELTAIKSAGISLIQSFRGLIVISVIIAGASFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P  +  + QL    +       + E +F+       + + + +  +  L  I +    
Sbjct: 124 IGPMAQKNMAQLLISMRHKSPELEIPEGVFYDGIPQTNLYVERKDMKSGHLYNIMVYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
           D+ +   I  A SG +     ++ ++LN
Sbjct: 184 DSYEDQAIILADSGMLQSTAEKKHLVLN 211


>gi|304383499|ref|ZP_07365959.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335309|gb|EFM01579.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 634

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ + +   F+  +  + + ++++     +L IL +   Y+   +
Sbjct: 4   IKKLDIFITKQFGLLFVGTFVICQFVLMMQFLWRWVDILIGKGLALEILAQFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +  V  ++  ++EL  I   G S +   + ++ L+ L++I  F  +N 
Sbjct: 64  VPQALPLAILLSSLIVFGNLGESSELTAIKAAGISLMQSFRSLILLSCLIAIGSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P+  S +  L    +       + E +F+       + + K N +   L GI I    
Sbjct: 124 VGPEANSRLNVLIQSMRHKNPELEIPEGIFYDGIPQSNLYVQKKNRDTGVLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIILN 204
           D+ +   I  A SG +    DR+ ++L 
Sbjct: 184 DSYEDAAIILADSGRLQTTADRKHLLLT 211


>gi|260910242|ref|ZP_05916919.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635746|gb|EEX53759.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 630

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 89/214 (41%), Gaps = 6/214 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  FL +    +F+  +  + + ++ +     ++ +L +   ++   +
Sbjct: 4   IKKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGKGLTMEVLAQFFWWMALMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     +++ ++EL  I + G S       ++ +  L+S+  F+ +N 
Sbjct: 64  VPQALPLAILLSSLITFGNLSESSELTAIKSAGISLTRTFSSLVVVCSLISVTSFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P     + QL    +       + E +F+    +  I + K +       GI I    
Sbjct: 124 IGPYSTIKLSQLLISMKQKSPELGIPEGVFYDGIPNSNIYVQKKDNQTGKFYGIMIYRMS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEV 208
           ++ +  +I  A SG +    +     + L +GE 
Sbjct: 184 NSYEDSEIILADSGMLQTTAERKHLLLTLWNGEW 217


>gi|239809484|gb|ACS26210.1| unknown [uncultured bacterium]
          Length = 359

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 126/347 (36%), Gaps = 27/347 (7%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
                  ++ I    + ++ +   +       +LL I G+ +P  L ++ P    +    
Sbjct: 1   MSAVSAVLLVIIMSGRFIKYLAQAAQGLLDPGVLLLIMGFRLPGFLQLILPLGLFLGILL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
               +   +E+ ++  TG S+  L+   L  A L+++ +      + P+  + + ++  +
Sbjct: 61  AYGRLYLESEMTVLSATGMSQRRLLVYSLAPAALVAVVVGWLSLGLAPQGIAEVDRILNQ 120

Query: 136 AQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDS---RDTQTH---KIY 187
                 F  L    F  L          + + + + L G+FI ++   R T       + 
Sbjct: 121 QDSLTEFDTLVPGRFQTLRGGSRVTYTRELSADRSELGGVFISETNVSRQTGKESGLSVL 180

Query: 188 YAQSGS--IDLDRQ-AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            A+SG   +  D    +IL +G  +  +P   D   +++ +Y +       S  + +   
Sbjct: 181 VAESGRQEVQPDGSRYLILENGYRYDGNPGQADYRAIQYDTYGVLLPKPEVSMELSEREA 240

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                LL  +             +R+E   R +  L   +  ++++  A  +   RQ + 
Sbjct: 241 LPTRELLGSD----------NIRHRTELQWRFSLPLLVFVVTVLAVPLA--KVNPRQGRF 288

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +  +   L   +  +      +         IP + L L+ +  +FL
Sbjct: 289 LKLLPAIL--LYMTYLALLIAVRGALDKGR-IP-MALGLWWVHGLFL 331


>gi|315617675|gb|EFU98281.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 335

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 120/334 (35%), Gaps = 25/334 (7%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++ +     S    N++L + G  +P +  ++ P    +     L  +   +E+ ++   
Sbjct: 1   MRILGAAVDSDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHAC 60

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+K  + LA+  +I   ++     P       ++ A+A+     + L +  F +
Sbjct: 61  GLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQ 120

Query: 153 LDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLDRQAIILNDGE 207
             +   +   +    +  + +F+   R        +  A SG    +    Q + LN G 
Sbjct: 121 ATNGSSVLFIESVDGSNFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGT 180

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
               + + +D  I  F+ Y         +      +  ++  L N +             
Sbjct: 181 RFEGTALLRDFRITDFQDYQAIIGHHAVALDPNDTDQMDMRTLWNTD----------TTR 230

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            R+E + R+T      +  L+ +         RQ +      +S+  +  ++  F  I  
Sbjct: 231 ARAELNWRITLIFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQT 283

Query: 328 KIEQNPY---YIPILYLFLFCISSIFLLMIKKKY 358
            ++ N       P L+++   +  + L ++   +
Sbjct: 284 SLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLW 317


>gi|45658408|ref|YP_002494.1| hypothetical protein LIC12569 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601651|gb|AAS71131.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 631

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 34/269 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLP 190

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 191 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYLS 250

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDL------YIKISKYNPN-NTLQGIF 174
           P+    + + +           +    F      DL       +     N N   L+G+ 
Sbjct: 251 PENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGVQ 310

Query: 175 IVD-------------------SRDTQTHKIYYAQSGSIDLD-------RQAIILNDGEV 208
           I +                      ++  +I  A  G++           ++I L DG +
Sbjct: 311 IREWEIFLEGNEYFHIGGKMIPMGGSRIIQIINAAKGNLVEKLGPDGEYEKSIRLKDGWI 370

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSST 237
              S   K  SI  F++  +         
Sbjct: 371 LEWSDDRKTFSITDFRNGEMDYNIPKGKE 399



 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            ++L  +  E H+R+   +  +IF  IS           +        + L I F  F  
Sbjct: 494 KKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTFFTL 553

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            S I +  +   +  P     L  + SI + MIK+
Sbjct: 554 GSTISYNDKIPDWIGPWSANILIALLSINI-MIKR 587


>gi|260174364|ref|ZP_05760776.1| hypothetical protein BacD2_21081 [Bacteroides sp. D2]
          Length = 616

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             F+ +    +FI  +  + + ++ +      ++++ +   Y   T++P+  P    + +
Sbjct: 1   MLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVMAQFFFYSALTLVPVSLPLAVLLAS 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                +     ELL +   G S + +++P+ F    L    F  +N++ P  ++ +  L 
Sbjct: 61  LITFGNFGERYELLAMKAAGISLLKIMRPLAFFVCGLVGVSFYFQNVVGPIAQAKLGTLI 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQS 191
              +       + E +F+    D  +K++K N     L  + I + +D  +   I YA S
Sbjct: 121 LSMKQKSPELDIPEGVFYSEIKDYNLKVAKKNRKTGMLYDVLIYNMKDGFENAHIIYADS 180

Query: 192 GSID--LDRQAIILN 204
           G ++   D+Q + L+
Sbjct: 181 GRLEMTADKQHLWLH 195



 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +  +++E+HK++T  L  ++F  I    A    ++R+     P+ +S+ + F +++    
Sbjct: 350 IRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDN 405

Query: 325 IIHKIEQNPYYIPILYLFLFCISSI 349
             +K+ ++  +I  +++ ++  S++
Sbjct: 406 TGYKMARDGKWI--VWMGMWTSSAV 428


>gi|67922983|ref|ZP_00516478.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
 gi|67855202|gb|EAM50466.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
          Length = 394

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 118/346 (34%), Gaps = 23/346 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +   FL        +   +  +   +  V+ S   L++ LK+    +P 
Sbjct: 20  LSIMDRYLFIELLLPFLFGMGIFTSLGLSIGSLFDLVRRVTESGLMLSVALKVLLLKLPG 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + +  P    +      T ++ ++E++ + + G S   LI PV+    +++   FI  +
Sbjct: 80  FVSLAFPMAMLLAALMAYTRLSSDSEIIALRSLGVSIYRLIIPVILFGFMVTGCAFIVND 139

Query: 120 IIEPKCRST----IKQLSAKAQLALTFSYL----------EENLFFRLDDDLYIKISKYN 165
            I P         +++   + +       +          E      +   L     +YN
Sbjct: 140 WIAPAATHEAAVTLERAVNQERPDFKERNIVYPEYKTIQEENGQEATVLSRL-FYAEEYN 198

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
               +QG+ I+D      ++I  ++S + ++        +G ++  +P     +I++F+ 
Sbjct: 199 GEQ-MQGLTILDRTQEGVNQIVTSESATWNISSNTWDFFNGTIYLIAPDGSYRNIVRFQH 257

Query: 226 YTLQTESANSSTIVLKAN--DQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLFP 282
             L    A       + N  +  ++           +   + +   +    ++       
Sbjct: 258 QQLALPRAPLDLANRRQNFTEMTIAETKEYLKAMQLSGNEKRIRKVQVRLQEKYALPFVC 317

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           +IFGL+      +     +        + + + FG +         
Sbjct: 318 LIFGLVGAAIGVRPQNTNKSTSF---GVCVGLIFGYYLLAFMSTSL 360


>gi|194334630|ref|YP_002016490.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194312448|gb|ACF46843.1| permease YjgP/YjgQ family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 387

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 134/355 (37%), Gaps = 25/355 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R  G + + + L  + +  V+ +++ I+    ++  +  +       +P V
Sbjct: 28  LKRIDTYIARQFGLTCIFASLSFLALFVVLDLIENIDRFIDNSVDIQHISLYYLSFLPEV 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
               TP    + +  V   ++ ++EL  I + G S   ++ P  F+++++++F  ++   
Sbjct: 88  FLATTPIAVLLSSLYVTGRLSSSSELSAIFSAGLSLRRIMLPFAFVSLVITVFNIVNAGW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPN-NTLQGIFIVDS 178
           I P+  +       +     +     E+    L+  D  + I K  PN    + I +   
Sbjct: 148 ILPETTAYKNTFMREFLGKNSEHLFPESRIHILESRDRILSIGKLEPNTGQAEKITLETF 207

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVHRKSPISKDISIMKFKSYTLQ 229
             +   +   A+  + + D    I+          D  ++R  P +         +  L 
Sbjct: 208 DGSTITQRIDAEKMNYNADLDRWIMTGTRNRTFLPDTTLYRYDPGN--------DTLKLS 259

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             +++   + L+  + N+           +     L+T   E H R+   +  +I  LI 
Sbjct: 260 LTASSLKELHLRPEEMNIVQHYRYIEEKKDAGFSNLQTAIIELHSRIALPITSLIIILIG 319

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFL 343
           +         R+++    I   +SI  G ++      IH I       P+L  +L
Sbjct: 320 V-----PLSTRKKRSGLAIEAGISILIGFLYISLEKTIHAIGNGGMADPVLTAWL 369


>gi|187477637|ref|YP_785661.1| permease [Bordetella avium 197N]
 gi|115422223|emb|CAJ48747.1| putative permease [Bordetella avium 197N]
          Length = 372

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 108/274 (39%), Gaps = 14/274 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  T   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGTIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PVL +AI +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWVRPVLRVAIPVALMVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  ++   +P + L  +F   +
Sbjct: 121 AAPWAYRQIGEYRERFEQRSDLSKVAAGQFAESGRGNRVFFAEDPVDPGDELGAVFAR-A 179

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D +   +  A+S     ++   + ++L+ G  +   P + ++ +  F+ Y ++ ES   
Sbjct: 180 IDPEWFSVLTAKSARGETLENGDRFLVLSKGHRYDLKPGTPEVRLTNFEEYGIRLESKGG 239

Query: 236 STI--------VLKANDQNLSFLLNPNPNNPNYR 261
                         +  ++ + L+  N N+   +
Sbjct: 240 EDPIASARAAAERSSKARSTTQLMEDNTNSSWSQ 273


>gi|319941842|ref|ZP_08016164.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804775|gb|EFW01642.1| hypothetical protein HMPREF9464_01383 [Sutterella wadsworthensis
           3_1_45B]
          Length = 379

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 135/366 (36%), Gaps = 25/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  ++  +          +  I   + +++ +N+ +  +     ++++  Y     LP
Sbjct: 2   IFKRSLIAELANLAGAVFTVLFTIVLAVAMVRFLNMAAGGSIEHGTVVQLVLYNALVNLP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNT-GTSRITLIKPVLFLAILLSIFLFISENII 121
            +      + T   L    ++ E+++  ++ G S ++ I+P +  A+ + + + +   +I
Sbjct: 62  PLLAASLFIATLMTLMRSWQDNEMVVWFSSGGRSILSWIEPTVKFALPIVVVIALLSIVI 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNN-TLQGIFIVDSR 179
            P  R+   +L          + +    F           +         ++ +F+ +  
Sbjct: 122 SPWARAETDRLRNSVSAREDVNAIAPGRFIEAMGGKRVFFVESAEEGGNQVRNVFMAEG- 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D     +  A+ G+I+++ +    ++L +G  +     S    I++F SY ++ +     
Sbjct: 181 DWGKESVVTAEKGTIEVNAEGDRYVVLGNGRRYEAQTDSGKTRIVEFGSYGVRLDIRIDR 240

Query: 237 TIV-LKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                K +   ++ L+ +P P+           +++E   R +     ++  L++I    
Sbjct: 241 AFASTKTSSMPIALLIASPTPD-----------HQAELLWRFSWPAAALLLALLAIP--L 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI--FLL 352
                R  + ++ +  +L     +           +Q   +    Y  L     I   +L
Sbjct: 288 SCTSPRAGRSLNLLMAALVFILYLNALSIVETKIEQQALTFWSG-YTVLNGSLLILTVVL 346

Query: 353 MIKKKY 358
            I++ +
Sbjct: 347 FIRRTW 352


>gi|189345952|ref|YP_001942481.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
 gi|189340099|gb|ACD89502.1| permease YjgP/YjgQ family protein [Chlorobium limicola DSM 245]
          Length = 360

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 116/358 (32%), Gaps = 11/358 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    +I R    SFL + +    +  +I +++ ++        ++ ++      +P+ 
Sbjct: 1   MKLLYRHIFRQFMTSFLFASIAFAALFTLITMVENLDEFFDRGIGISGIVWYYLLALPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + +      ++ ++EL  I + G     L++P +   +L+S    ++ + 
Sbjct: 61  FQITAPVAALLASILTAGRLSASSELAAIRSAGVGMSQLMRPYVLGGLLISGINLLNASF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNN-TLQGIFIVD 177
           +EP           +     T S L E     +   ++  + I  ++  +     + +  
Sbjct: 121 LEPAAAKEKISFEKQVLNE-TRSGLHEGTNIHVIEPENRIVTIESFDAKHLQASKVTVEQ 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSS 236
              ++      A     D      I+    +        +IS      +  L     +  
Sbjct: 180 FNGSRLISRKDASRMVFDPAIDRWIMQKAAIRSFGADPGEISFSTGNDTLNLLLSIQSLQ 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L+  + NL                 L+  R + H +    L  ++   I  +     
Sbjct: 240 ELSLQPEEMNLMQHYRYVKEKMQAGFPGLDRARVKLHAKTALPLASLV---IIFIGVPLS 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFL 351
            + ++      I I+L I F        +          P+    L + LF  +   L
Sbjct: 297 TVKKRSGLAAEIAIALFIGFLFLGMQKTVASLGYNGIIEPWIAAWLPIILFLGAGALL 354


>gi|56479503|ref|YP_161092.1| hypothetical protein ebA7171 [Aromatoleum aromaticum EbN1]
 gi|56315546|emb|CAI10191.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 359

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 131/364 (35%), Gaps = 14/364 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ R I  +  M  L  + +      +  +++V      L+  L     LIP  +
Sbjct: 3   RVLTRYLAREIFGATAMVLLAFLGLFVFFDFINELDVVGKDGYELHHALIFVVMLIPGRV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + T   LT++ R++E+ ++  +G S   +++ +  + ++  +  F+    +
Sbjct: 63  YELLPVAVLIGTLYALTTLARHSEITVMRVSGMSTPAMLRALGGIGVIFVVLTFVIGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRD 180
            P      +Q    A  +   + L   L+ +  D L  + +    P+ +++ + I D   
Sbjct: 123 APPAEQAAQQWRLTATHSAVSNQLRSGLWVK--DGLRVVNVRTVLPDRSMEKVRIYDFDA 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    A +G  D  +Q  +L      R      D+  +   ++         S ++
Sbjct: 181 QHALLSISEAATGRYDAAQQGWLLEGVRQTRFLGDHTDVVDLTELTWRSDLTPQVLSVLM 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +     +++ L     ++     +  + Y     K+L      ++   +++      +  
Sbjct: 241 VVPERMSVTTLFA-YISHLRENRQNADRYEIALWKKLVYPFAALVMMALALPF----SFT 295

Query: 300 RQRKKIHPIFISLSISFGVFWG-----FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R     + + L +  G+ +      FS +       P    +    LF  ++  +L+ 
Sbjct: 296 HDRMGGVSMKVFLGVMLGIGFHLLNGLFSSLGVINSWQPALAALTPSALFLAAAAGMLVW 355

Query: 355 KKKY 358
            ++ 
Sbjct: 356 VERR 359


>gi|313886927|ref|ZP_07820630.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332300780|ref|YP_004442701.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312923624|gb|EFR34430.1| putative phage tail component, N-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177843|gb|AEE13533.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 678

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 7/202 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRI----NLVSSSTESLNILLKISGYLIPTVLP 62
           YI   + RSFL   L  + I W + ++Q +    + +      + +LL++  Y    VLP
Sbjct: 9   YIF--MVRSFLPLLLMTLLICWFVVLMQFLWQHVDDLVGKGMDVGVLLEVIFYAGLYVLP 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + +     ++    ELL + + G     ++KP++ L   +++ LF+  +   
Sbjct: 67  TAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIALGLFVYLDRGV 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT 181
            K    + Q+   A+ A     + + +FF   D   I +   +   +TL  + I D  + 
Sbjct: 127 QKASVRVYQILFSARYARPELEIPKGIFFNGIDGYSIYVGDKDAATSTLYNVMIYDLSEQ 186

Query: 182 QTHKIYYAQSGSIDLDRQAIIL 203
            T +I  A +G + +D   + L
Sbjct: 187 HTPRIILADTGRLLMDESKLYL 208



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 226 YTLQTESANSSTIV----LKANDQNLSFLLNPNPNNPNYRPELLETYRS---EFHKRLTQ 278
           YTL +    ++        K   + L  L +       Y  +    YR    E H++ T 
Sbjct: 368 YTLDSLMDRATDQDKLLGYKQALEWLESLSSSVQIADTYYDDAASDYRVNAQEMHRKFTF 427

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIP 337
            +  ++F     V A   A+VR+     P+ +++ I    +   ++ +  I         
Sbjct: 428 PVACLLFF---FVGAPLGAIVRKGGVGTPMVLAVLIFIIYYVIDTFGLKMINSGQIPVWA 484

Query: 338 ILYLFLFCISSIFLLMIKK 356
            ++L    I  +   +  K
Sbjct: 485 GMWLSSAVILPLGAFLTYK 503


>gi|154491977|ref|ZP_02031603.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
           43184]
 gi|154088218|gb|EDN87263.1| hypothetical protein PARMER_01608 [Parabacteroides merdae ATCC
           43184]
          Length = 655

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 85/216 (39%), Gaps = 6/216 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++L+     FLM+    +FI  +  + + I+ +      + +L ++  Y    +
Sbjct: 4   IKRLYTFMLQTFLPLFLMTFGICLFIVLMQFLWRYIDDMVGKGLGIPVLAEMFMYAALFL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL + + G S + +++P++    ++SI  F  +N 
Sbjct: 64  VPMALPLAILLASLMTFGNLGERLELLAMKSAGVSLVHIMRPLIITISIISIGAFFFQNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P  +  +  L    +       + E +F+       + +   +     L+ + I D  
Sbjct: 124 AMPVVQVKLYTLLWSMRQKSPELDIPEGVFYSEITGFNVYVKHKDTETGLLRDMMIYDYS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHR 210
           +      +  A SG +          + L +GE  R
Sbjct: 184 EGFNKVSVMVADSGRLKTSADKMFLVLSLFNGESFR 219



 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +  YR   +  + +E+HK+ T     ++F  I    A   A++R+     P+ IS+ I F
Sbjct: 384 DEAYR---VRRHLTEWHKKFTLSFACMVFFFIG---APLGAIIRKGGLGMPVVISV-ILF 436

Query: 317 GVFWGFSYIIHKIEQNPYY--IPILYLFLFCISSIFLLMIKK 356
             ++    I  K+ ++  +     ++L    ++ + + +  K
Sbjct: 437 IFYYIIDNIGFKMARDGVWEAWQGMWLSSAILAPLGIFLTYK 478


>gi|305667079|ref|YP_003863366.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
 gi|88708012|gb|EAR00250.1| hypothetical protein FB2170_12551 [Maribacter sp. HTCC2170]
          Length = 482

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 89/245 (36%), Gaps = 16/245 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI     I   I+ ++     + I+ K   YL+P +   V P    + +     ++  N
Sbjct: 1   MFIFIFQTIWLFIDDLAGKGLDIIIIGKFLFYLMPNLTEKVLPLTVLLSSILTFGTLAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    +  ++   + L    F   N + P     I  L           
Sbjct: 61  YEFAAMKASGISLQRAMLSLIVFIVFLGGVTFYFANSVIPASEQKIYNLRRNIAKVKPAV 120

Query: 144 YLEENLFFRLDD-DLYIKISKY--NPNNTLQGIFIVDSRDTQTHKIYY-AQSGSIDLDRQ 199
            + E +F   +  D+ IK+ K     +  L+ + I     T+ +     A+SG +     
Sbjct: 121 AIVEGVFSDFEGADMNIKVDKKHGENDRFLENVTIHQKTKTKVNSTVIKAKSGELKSSET 180

Query: 200 ----AIILNDGEVHRKSPISKD-------ISIMKFKSYTLQTESANSSTIVLKA-NDQNL 247
                ++L DG  +R  P S          +   F++YT+  + +  + + +    D+  
Sbjct: 181 SDILQLVLYDGHYYRDLPKSSKKAKNKHPFAKADFETYTMNIDLSEFNNVDMDEVRDRET 240

Query: 248 SFLLN 252
             + N
Sbjct: 241 EKMKN 245



 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           R E+   +    HK+    L  VI      V A   A++R+     P+ I++ +    ++
Sbjct: 358 RYEIYNRHIISLHKKYALALSCVILF---FVGAPLGAIIRKGGIGLPMVIAIVLFLTYYF 414

Query: 321 GFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIKK 356
              +  +  ++N  + I   +L    +  + +++ K+
Sbjct: 415 IGVFAENYAKKNEIHPIIGAWLSTMIMLPLSIVLTKR 451


>gi|281423648|ref|ZP_06254561.1| putative permease [Prevotella oris F0302]
 gi|281402200|gb|EFB33031.1| putative permease [Prevotella oris F0302]
          Length = 637

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 86/207 (41%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ I+ K   Y+   +
Sbjct: 9   IKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMGLML 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + + +S   F+ +N 
Sbjct: 69  VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNN 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+  + I QL    +       + E +F+    +  + +   +     L GI I    
Sbjct: 129 IGPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQHKDLKTGKLYGIMIYRMT 188

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIIL 203
            + +   I  A SG +     ++ ++L
Sbjct: 189 GSYEDQAIILADSGMLQSTAEKKHLVL 215


>gi|39997021|ref|NP_952972.1| hypothetical protein GSU1923 [Geobacter sulfurreducens PCA]
 gi|39983909|gb|AAR35299.1| membrane protein, putative [Geobacter sulfurreducens PCA]
 gi|298506038|gb|ADI84761.1| membrane protein, YjgQ-related [Geobacter sulfurreducens KN400]
          Length = 358

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 123/365 (33%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI     +   +     V I  VI  L++I  +         +++     +P +
Sbjct: 1   MTILTRYIAGAYLKILGLCLASFVAIYLVIDFLEKIGRLLRFQPRWIDIIQYFICKLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    M T   L  ++RN+E++ +   G     +  P++ +A  +S+    S   
Sbjct: 61  ITQVIPLAVLMSTLLTLGMLSRNSEIVAMRGCGVGLGRISAPLIVIAAAVSLLTIFSNEF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
           + P     ++ +     +   T ++  +N  +  D+   +    ++P    L+GI +   
Sbjct: 121 VLPSSYRQMRYVDQVLIRKQGTNTFFRQNNIWHKDESAIMMARVFDPGRQALRGITLWRF 180

Query: 179 RDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            D         A  G+ D  R         V  +      +      S   +        
Sbjct: 181 SDGMRPVSRIDAAEGTWDGARWTFK----TVTVRGLAGPSVETRTLASLPAELNLKIEDL 236

Query: 238 IVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            V+     N+ F    +              Y ++ H +++     +I   + I  A + 
Sbjct: 237 KVVDKYADNMGFFKLRDYVRKLKAGGYDTTRYEAQMHSKISLPFASLIMAFLGIPFALRG 296

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
              R       I  S+ I F  F   S +I    Q     P++  +    LF +S I+L 
Sbjct: 297 G--RSSGVALGITASIGIGFAYFITNSILIS-FGQTGILPPLISAWAANVLFALSGIWLA 353

Query: 353 MIKKK 357
           M   +
Sbjct: 354 MTLDR 358


>gi|241668815|ref|ZP_04756393.1| hypothetical protein FphipA2_08605 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877347|ref|ZP_05250057.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|254843368|gb|EET21782.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 360

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 134/366 (36%), Gaps = 28/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYSQGLGIDSIIKFVILTIPGNVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  +     L+I  F++   I 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYIN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P  + T     A        S + ++   +  D   I I   +  NTL+ +F+  + D  
Sbjct: 122 PLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKS-GNTLKDVFLYMATDNS 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A    +  D+ A  +  +D  ++ K P +          YT  T      TI 
Sbjct: 181 DEYKVVTAPVAEVITDKGAAYVDFHDAHIYTKEPKT--------SEYTYDTAKNAIYTI- 231

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETY---------RSEFHKRLTQWLFPVIFGLISI 290
              +D++     N +  +  Y   L+E +         R EF  R+   +  ++  L+++
Sbjct: 232 FDTSDRD----YNHDKVDRLYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVASLLAL 287

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                R    +  K+ P  + L++       F   +    + P +I  L+L         
Sbjct: 288 ALCRLRPRQNKYAKLLPSVVVLAVYLCSNM-FVNTLMTGGKLPVWIG-LWLPHIFFIIYA 345

Query: 351 LLMIKK 356
           +  I+K
Sbjct: 346 IRTIRK 351


>gi|24213806|ref|NP_711287.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24194638|gb|AAN48305.1| hypothetical protein LA_1106 [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 631

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 34/269 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YILR I   FL+S  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 131 ILDRYILREIFSPFLVSLAFFTMVYMVLALQKMIGLFVGKGVDPFRLLDYFGYLLANTLP 190

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 191 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALLVGYLNFYLS 250

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDL------YIKISKYNPN-NTLQGIF 174
           P+    + + +           +    F      DL       +     N N   L+G+ 
Sbjct: 251 PENTRKMNEFNKWILAYNPLLAITPGQFSGDKTQDLFEKRARTMYTEGMNSNTGELKGVQ 310

Query: 175 IVD-------------------SRDTQTHKIYYAQSGSIDLD-------RQAIILNDGEV 208
           I +                      ++  +I  A  G++           ++I L DG +
Sbjct: 311 IREWEIFLEGNEYFHIGGKMIPMGGSRIIQIINAAKGNLVEKLGPDGEYEKSIRLKDGWI 370

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSST 237
              S   K  SI  F++  +         
Sbjct: 371 LEWSDDRKTFSITDFRNGEMDYNIPKGKE 399



 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            ++L  +  E H+R+   +  +IF  IS           +        + L I F  F  
Sbjct: 494 KKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTFFTL 553

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            S I +  +   +  P     L  + SI + MIK+
Sbjct: 554 GSTISYNDKIPDWIGPWSANILIALLSINI-MIKR 587


>gi|284929068|ref|YP_003421590.1| putative permease [cyanobacterium UCYN-A]
 gi|284809527|gb|ADB95232.1| predicted permease [cyanobacterium UCYN-A]
          Length = 402

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 123/357 (34%), Gaps = 20/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + YIL  +      S   +  +   +  +    N V  S   L   L+I    IP   
Sbjct: 31  LIDRYILSQLIGPLAFSVGLVSILGVAIGYLSDLSNKVVESDLPLIQALEIIFLKIPEFT 90

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    + T      ++ ++EL+ +   G S   L+ P   ++++++   FI   +I
Sbjct: 91  AYALPISMMLSTLLTYGRLSGDSELIALRVCGASLYRLVMPAFIISLIMTGITFIFSELI 150

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY------------IKISKYNPNNT 169
            P     +  +  +        +  +++F+   + +             +  ++      
Sbjct: 151 VPAANYRVTSILVEHLQEERPYWQNKDIFYPDYEKVVLPDGSTEKQLKHLFFAEKFDGQK 210

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YT 227
           L+ + +++  + + ++I  + S + +   +     +G +++ +P S       FK     
Sbjct: 211 LETLTVLEWLEKKLNRIVVSDSAAWNAQDETWDFFNGTIYQLAPDSSYQGTYSFKHRQLP 270

Query: 228 LQTESANSSTIVLKANDQNLSFLLN-PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           L   +           + N+                + L T++    +++      ++FG
Sbjct: 271 LAKSAFEFIQEGRDPYEMNIFQAQKYMKILRVMEDEQKLRTFQVRVQQKIAFPFICIVFG 330

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +I          +    +     +S+ I F +++   ++I  +       P +  +L
Sbjct: 331 VIGSALGTSPQYI---NRAMGFGLSVVIVF-IYYLLGFLIGSLGLIGVVSPFMAAWL 383


>gi|254446878|ref|ZP_05060353.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
 gi|198256303|gb|EDY80612.1| putative permease, YjgP/YjgQ family [Verrucomicrobiae bacterium
           DG1235]
          Length = 370

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 126/369 (34%), Gaps = 17/369 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+     ++F +    +  +  + +I      + S   +   +L     L P+ L + 
Sbjct: 6   DRYVFTEWLKAFALVLSSMFGLLILFEIQDSFTDLVSYDATGGQILFYYAILAPSFLTVT 65

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  ++R  E + +   G S   + + +   ++L+S  L+   + + P 
Sbjct: 66  LPASILVSILYALGQLHRANEFVALRAAGMSVFRVTRSIWLASLLISGGLWYLNSSLIPW 125

Query: 125 CRSTIKQLSAKAQLALTFSYL-------EENL-FFRLDDDLYIKISKYNP-NNTLQGIFI 175
                 QL    +       L        E L F    ++    I++Y+   +   GI +
Sbjct: 126 SVEQSNQLITTLRQDSEAKILDSDEIGVVEGLAFDNRRENRMWFINRYSEYKSQAFGISV 185

Query: 176 VDSRDTQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               + +   +   A+ G  D D     L DG      P +       F+    +  + +
Sbjct: 186 SIMDEERREVRRVMARYGYFDEDLGYWTLFDGRERLNDPDTGRERWPPFERLDAKDLTDD 245

Query: 235 SSTIVL---KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            + ++L   +  D +   L     +        +  Y       +      +I   I+I 
Sbjct: 246 PTLMLLFGKRPKDLSFFQLRRITDSFTQEDNPNVLAYEVRLQALMASAASCLIVAGIAIP 305

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A       +      +  S+ + F VF+ F+ +++   +     P +  ++  ++ I L
Sbjct: 306 FAVSGV---RTNPAVGVTKSIGL-FFVFYIFTSVLNAFGREGALSPEMAAWIPMVAMILL 361

Query: 352 LMIKKKYTK 360
             +  +  +
Sbjct: 362 AYVLMRRVR 370


>gi|300728391|ref|ZP_07061753.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
 gi|299774310|gb|EFI70940.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
          Length = 631

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 84/207 (40%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++ +  G  F  +     F+  +  + + ++ +      +  L +   Y+   +
Sbjct: 4   IKKLDIFLAKQFGLLFAGTFFICQFVLMMQFLWRYVDDLIGKGIPMTALAQFFWYMGLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +   L ++  ++EL  I   G S +  ++ ++ +  ++ +  F  EN 
Sbjct: 64  VPQALPLAILLSSLITLGNLGESSELTAIKAAGISLLQALRSLIVITCIIMMASFYFENN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P     + QL    +       + E +F+    +  I + K +  +  L GI I    
Sbjct: 124 LGPDANMKLSQLLISMKQKSPELEIPEGVFYDGIPNSNIYVQKKDLKSGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIIL 203
            + +   I  A SG +     ++ +IL
Sbjct: 184 QSYEDAAIILADSGMMQSTAEKKHLIL 210


>gi|299141277|ref|ZP_07034414.1| permease [Prevotella oris C735]
 gi|298577237|gb|EFI49106.1| permease [Prevotella oris C735]
          Length = 632

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 83/205 (40%), Gaps = 2/205 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ I+ K   Y+   +
Sbjct: 4   IKKLDIFIAKQFGMLFVGTFFICQFVLMMQFLWRYIDDLIGKGLSMEIMAKFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + + +S   F+ +N 
Sbjct: 64  VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLMQAFRSLIVITLFVSGVSFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+  + I QL    +       + E +F+    +  + +   +     L GI I    
Sbjct: 124 IGPEANNKIAQLLMSMKQKSPELEIPEGIFYDGIPNSNLYVQHKDLKTGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIIL 203
            + +   I  A SG +    +   L
Sbjct: 184 GSYEDQAIILADSGMLQSTAEKKHL 208


>gi|328948914|ref|YP_004366251.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449238|gb|AEB14954.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 447

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 124/345 (35%), Gaps = 16/345 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI + +   FL+  +F   + +V QIL     +      +N +LK+  Y +P V+
Sbjct: 81  NILVRYIAKELLLYFLICFVFFFVVFFVNQILLLAETILKKRVPINSVLKLILYCLPNVI 140

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   +     L  +  + E+LI   +G     ++K VL + +L+S+F FI  +  
Sbjct: 141 SQSAPFATLVGFLMCLGRLVTDNEILIFRASGQRYSLILKSVLAMGLLISVFSFIMNDYF 200

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +L  +  ++     LE     +  +D  + I   + NN    I + DS   
Sbjct: 201 LPIGTLKYNRLFKQIIVSNPAIELESKS-IKRMNDSTLVIGNVSKNNV-SDIVLFDSEKD 258

Query: 182 QTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSP-ISKDISIMKFKSYTLQTESAN- 234
              +I  A +  +           + +N   V       +++   +  +   L     + 
Sbjct: 259 GVQRIIMAGNSDVKKSSTPGVIMQLDMNSPIVLSLDKSKTENYESISAEKLRLNIFEDSI 318

Query: 235 -SSTIVLKANDQNLSFLLNP---NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            SS+      +     L+          +   + L T+  E +K+ +       F L++ 
Sbjct: 319 ISSSNGTSPREMTSWDLIKRIKKMKQENSSTKKRLNTFILECNKKFSVPFGSFFFALLAF 378

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
             A      ++  +   +   + +S  ++W  + I         Y
Sbjct: 379 PLALI--FGKKDGQTLGLIFGIILSV-LYWSATIIGQMFGIRGGY 420


>gi|257465009|ref|ZP_05629380.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
 gi|257450669|gb|EEV24712.1| hypothetical protein AM202_00770 [Actinobacillus minor 202]
          Length = 309

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 91/300 (30%), Gaps = 19/300 (6%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLAKVALFLSIFTTALAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIV-- 176
            + P   +   +L A+A+    FS L    F        + I   N   N L  I++   
Sbjct: 61  WLTPWSINKQSELLAEAKANPRFSALSAGQFMT-AGGYVLFIDNINYDQNKLNDIYVFQP 119

Query: 177 DSRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D +      +  A SG +       Q + L +   +  +    D  I  F++YT      
Sbjct: 120 DQQKKNRPSVIVADSGELKGLPNGDQILTLENSTRYEGTAKVADFRISHFENYTAYLGHQ 179

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  +            L+           +  E  ++E   R        +  L+++   
Sbjct: 180 DVDSDEK---------LVQRADWAKLVADKSPEA-QAELQWRFALIFATPLMALLAVP-- 227

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 RQ +    +   L          +              ++ +       + ++M
Sbjct: 228 MSSVNPRQGRFAKLLPALLLYLIYFLLQSTLKSSGASGKLDPTILMPVVSVAFLILGIVM 287


>gi|307129163|ref|YP_003881179.1| hypothetical protein Dda3937_01299 [Dickeya dadantii 3937]
 gi|306526692|gb|ADM96622.1| conserved inner membrane protein [Dickeya dadantii 3937]
          Length = 372

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 129/357 (36%), Gaps = 22/357 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPAMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L L++L + F   +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKGVLLKAALLLSLLTASFAAANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P       ++ A+A+     + L E  F +  D   +        +  + +F+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKANGSDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F  Y         + 
Sbjct: 182 NTRPSVVVADRGTVTARGDGSQVVTLSKGTRYEGTAMLRDFRITDFIDYQAIIGYQPVAL 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  ++  L   +              R+EFH RLT  L  ++  ++ +       
Sbjct: 242 DPNNVDQMDMQTLWRSSD----------IAARAEFHWRLTLILSVLVMAIMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  N     +  L    ++++    +
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPLVWMWLTNLGYFAL 341


>gi|238785038|ref|ZP_04629035.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
 gi|238714079|gb|EEQ06094.1| Inner membrane protein yjgP [Yersinia bercovieri ATCC 43970]
          Length = 364

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 127/365 (34%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNLVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G  + +LI   L LA+  S    ++   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMHACGMGKKSLILAALILALGTSALAAVNTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P       ++   A+   + + L    F    D    + I           +F+   R  
Sbjct: 122 PWSSKHQDEVLNDARANPSLAALAGGQFKSSTDGNSALFIGNVT-GKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                 +  A SG +       Q +ILN G  +  + + +D  I  F  Y          
Sbjct: 181 GNQRPSVVVADSGHMTERPDGSQVVILNKGTRYEGTALLRDFRITDFVDYQAIIGHQEVQ 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A    +  L   N  +           R+EFH RLT  +  VI  L+ +      
Sbjct: 241 QNSNVAEQMTMKQLWRSNEADA----------RAEFHWRLTLIVSVVIMALLVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLM 353
              RQ +      +S+  +  ++  F  +   +  N       P+L+++      + + +
Sbjct: 289 VNPRQGR-----VLSMLPAMLLYLIFFLLQSSLRSNAGNGKLDPLLWMWTVNGVYLAIAV 343

Query: 354 IKKKY 358
           I   +
Sbjct: 344 ILNLW 348


>gi|119471262|ref|ZP_01613765.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
 gi|119445728|gb|EAW27011.1| hypothetical protein ATW7_11360 [Alteromonadales bacterium TW-7]
          Length = 354

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 134/356 (37%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+ R I ++   + L +V I+ +I+ ++++  V   +  L   +  + Y IP  
Sbjct: 1   MKTLDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKSVGRGSYDLITAMLYTLYSIPGD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L ++  N+EL+++   G SR+ +I  V+  A+ ++I +      
Sbjct: 61  LVVFFPMAALIGGLTGLGALASNSELVVMQAAGMSRLQIIGSVMKTAMFMAICMMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+ +   K++  +A         ++ ++ +  ++ +I I   + +  L G+ +    D
Sbjct: 121 GAPEAQLRAKEMRNQAIHGGDVFSAQKGVWAKDGNN-FINIEDVDESGKLNGLHMYYF-D 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +        ++      +   +L D      +       +   + Y  Q  +     + +
Sbjct: 179 SSLELTQITKAKEAISRKDGWLLRDVNKVIITDELITTELHPEEFYPSQLTAEKLGVVSV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    + + L +   +      +   TY     ++  Q +   +  L+++          
Sbjct: 239 KPESLSFTGLWS-YLSYLEQNEQDTSTYDLALWRKFMQPVSVAVMLLVALSFIFGPLRTV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  I  +   +  I     LM K+
Sbjct: 298 TMGARIIMGVVTGIVFHLTNEIFGPVVMVYQIPAIIGAVLPSVIFIGFATYLMNKR 353


>gi|312129693|ref|YP_003997033.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
           17132]
 gi|311906239|gb|ADQ16680.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
           17132]
          Length = 453

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 89/235 (37%), Gaps = 8/235 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +   ++     F+++   +VFI  +  ++            + +  K+  Y     
Sbjct: 1   MKKIDKLFVKSYIGPFVLTTAIVVFIFLMRFLMIYFPEFIGKNLDMMVFAKLFFYFTMMT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + T     ++   +EL  + + G     LI P + L+I ++IF     N 
Sbjct: 61  IPMSLPLATLLATLMCFGNLGEKSELTAMKSAGIPITRLIVPTMILSIFVAIFSIGYNNT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-S 178
           + P        L    +       ++E +F+       IK+ K   +  +L+ + + D +
Sbjct: 121 VNPWANLKGWSLLYDIKTTKPALNIQEGIFYNQIPGYRIKVEKKVGDGQSLKNVIVYDHN 180

Query: 179 RDTQTHKIYYAQSGSI--DLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQ 229
             +    I  A SG +        ++  L +G  + +     +++ M    Y+ Q
Sbjct: 181 TGSGNKNITVADSGRMYTINKESQLVFELYNGVNYSEGSSYNNMAQMT--RYSFQ 233


>gi|298372198|ref|ZP_06982188.1| permease [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275102|gb|EFI16653.1| permease [Bacteroidetes oral taxon 274 str. F0058]
          Length = 490

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +LY+LR      +++    +F+  +  I  R++ +      +  + K   Y     
Sbjct: 4   IKKLDLYVLRQFMTLLVVTFFISLFVIVMQFIWLRLDDMMGKGIPIETMAKFFFYSSLAF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            PM  P    + +     +M    EL+ +   G S   +++ ++    ++ I  F   N 
Sbjct: 64  TPMALPLAILLASLMTFGNMGERFELIAMKTAGISLFRIMRSLMIFIAMIVIGAFFYSNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P  +  +  L    +       +    F+     + I     + +   +  + I D  
Sbjct: 124 VIPMAQKRMWTLVYSFKDKALEIEIPVGEFYTGIRGVNIYARGRDTDKKAMTNVMIYDFT 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE----VHRKSPISKDI 218
              Q+  +  A +  I          I + +GE    V ++   S  I
Sbjct: 184 KGFQSASVTAADTVRISTTEDKKYLKIDMKNGECFENVQQQQVGSNTI 231


>gi|288929933|ref|ZP_06423775.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328752|gb|EFC67341.1| putative permease [Prevotella sp. oral taxon 317 str. F0108]
          Length = 630

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 87/214 (40%), Gaps = 6/214 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  FL +    +F+  +  + + ++ +     ++ +L +   ++   +
Sbjct: 4   IKKLDIFICKQFGMLFLGTFFICLFVLMMQFLWRYVDELVGKGLTIEVLAQFFWWMGLMM 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I + G S       ++ ++  +S   F+ +N 
Sbjct: 64  VPQALPLAILLSSLITFGNLGESSELTAIKSAGISLTRTFSSLVVVSCFISATSFVFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P     + QL    +       + E +F+    +  I + K +       GI I    
Sbjct: 124 IGPYSTIKLSQLLVSMKQKNPELEIPEGVFYDGIPNSNIYVQKKDVKTGKFYGIMIYRMS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGEV 208
           ++ +  +I  A SG +    +     + L +GE 
Sbjct: 184 NSYEDSEIILADSGMLQTTAEKQHLLLTLWNGEW 217


>gi|325954392|ref|YP_004238052.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
 gi|323437010|gb|ADX67474.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
          Length = 500

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 30/272 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+L+     F      + FI  V    Q ++           + ++  Y+   V
Sbjct: 2   IKKLDGYVLKTFIGPFFFIFSILFFIFIVQFAWQEMDKYVGKGLDWLTIGELIFYMGINV 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V P    + +           EL  +  +G S + ++  V  L  LLSI L+   + 
Sbjct: 62  IQLVLPLTILLGSIMTFGGFGERYELAAMKASGLSLVRILSSVFVLVALLSIGLYHFGDK 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV-- 176
           + P  +   +Q+      A     + E +F        +K+++ + +N+  L  IFI   
Sbjct: 122 MMPYSQRKARQIMFSVIEAKPTLQITEGVFSNNIPGFSMKVNRVDGDNSEKLTDIFIHQQ 181

Query: 177 -----------DSRDTQTHKIYYAQSGSIDLDRQA-----IILNDGEVHRKSPISKDI-- 218
                      D    Q      A+ G + +D+       + L DG  + +   +K    
Sbjct: 182 LSKTVLDENGNDINIEQDPLTIIAEKGILQVDKHNPRFLKLELFDGISYTEPLKNKSYEQ 241

Query: 219 ------SIMKFKS--YTLQTESANSSTIVLKA 242
                    KF S  Y +   +          
Sbjct: 242 RKRQENQTTKFDSLHYFIDISAIVDKQTQQDP 273


>gi|288800724|ref|ZP_06406181.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332185|gb|EFC70666.1| putative permease [Prevotella sp. oral taxon 299 str. F0039]
          Length = 636

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 88/207 (42%), Gaps = 4/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I++  G  F+ +     F+  +  + + I+ +     ++++L +   Y+   +
Sbjct: 4   IKKLDIFIVKQFGLLFIGTFFICQFVLMMQFLWRYIDDLIGKGLTIDVLAQFFWYMGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S +   + ++ + IL++   F  +N 
Sbjct: 64  VPQALPLAILLSSLIAYGNLGESSELTAIKAAGISLMQSCRGLIVITILIAFSSFYFQNN 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P     + QL    +     + +   +F+    +  I + K +     L GI I    
Sbjct: 124 IGPTANLKLAQLILSMRDKSPETQIPVGVFYDGIPNSNIYVQKKDNETGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDL--DRQAIIL 203
            + +   I  A SG +    DR+ ++L
Sbjct: 184 GSYEDQAIILADSGMLQSTADRKHLLL 210


>gi|225012841|ref|ZP_03703274.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225002963|gb|EEG40940.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 357

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 127/361 (35%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI++    +F +  L  + I  ++ + ++I+           ++          
Sbjct: 1   MKLIDLYIIKRYIGTFTVMILLFIPIGIMVDVAEKIDKFKEKEVPFGAIIDYYIDFTWYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S    ++P L  A  ++IF F +  +
Sbjct: 61  ANLLFPIFLFLSVIWFTSKLANNTEVIAILSSGISFFRYLRPFLLAATFIAIFAFFAGML 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I PK          K  +          +F +++++ +I ++ Y+P         +    
Sbjct: 121 IVPKSNLGFNDFRYKYIIKKEARNTT-KVFQQINENEFIYVNSYDPIRKRATNFTLEHFE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +      +       D     L++         S+    +  K      E  + + + 
Sbjct: 180 GNKLKFKIKSNRIRWVEDDSVFRLSNYSKRTFLGDSEHFESIARKDTLFDFEIEDLAPVN 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A     S L     +       L  ++    HKR +  +   I  +I++      +  
Sbjct: 240 YIAETLTFSELNQFIEDEKERGSMLTNSHLLVRHKRWSIPISAFILTIIAVAV---SSFK 296

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+      +   +S+ F   +    F  ++ K    P     L L LF I + FLL   K
Sbjct: 297 RRGGMGVNLAFGISLGFLFIFFDKIFGVLVSKSTFPPVVAAWLPLVLFGILAFFLLRYAK 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|242240955|ref|YP_002989136.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
 gi|242133012|gb|ACS87314.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
          Length = 366

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 130/350 (37%), Gaps = 27/350 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGEIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G  +  L+K  L LA+L  +   ++   + 
Sbjct: 62  LILPLSLFLGLLMTYGKLYAESEITVMHACGLGKSVLLKASLLLAVLTVLLAMVNVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P       ++ A+A+     + + E  F +  D   +           + IF+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGVASMVEGQFQQTQDGNSVLFVGNVSGQDFERIFMAQLHPRE 181

Query: 181 TQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G I   +   Q + LN G  +  + + +D  I  F +Y       + + 
Sbjct: 182 NTRPSVVVADRGHIVARNDGAQIVTLNKGVRYEGTAMLRDFRITDFVNYQAVMGHQDVAI 241

Query: 238 IVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                   ++  L  +P+              R+EFH RLT  L  +I  ++ +      
Sbjct: 242 DPTNVEQMDMKTLWSSPDIA-----------ARAEFHWRLTLVLSVLIMAVMVVP--LSV 288

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFL 343
              RQ +      +S+  +  ++  F  +   +  N       P+++++L
Sbjct: 289 INPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSNASKGKLDPLMWMWL 333


>gi|254882243|ref|ZP_05254953.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643195|ref|ZP_07997823.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
 gi|254835036|gb|EET15345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385099|gb|EFV66050.1| hypothetical protein HMPREF9011_03424 [Bacteroides sp. 3_1_40A]
          Length = 632

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 4   IKKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK +  +  L    +       + E +F+   +   I + + +     L+ + I +  
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE 207
           D  +   I +A  G +++        + L +GE
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLYLHLYNGE 216



 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F SYTL  +     +   +   + L+   +            +  + +++HK++T  L  
Sbjct: 324 FNSYTLAEKDKTLGSAADRT--EALASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSC 381

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYL 341
           +IF  I    A   A++R+     P+ +S+ I    +   S      +      +  +++
Sbjct: 382 LIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWM 438

Query: 342 FLFCISSIFLLMIKKK 357
               ++ I      K 
Sbjct: 439 STIVLAPIGAFFTYKS 454


>gi|254514079|ref|ZP_05126140.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
 gi|219676322|gb|EED32687.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR5-3]
          Length = 362

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 122/349 (34%), Gaps = 25/349 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +    L     ++ I    + ++ +   +S   +  ILL +  Y +P  L 
Sbjct: 2   RLRSYLGSDVLGHTLAVSSVLLAIILTGRFVKYLAEAASGKLAAEILLPVMFYRLPGFLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E++I+   G     L +  L  A L+ + +      I 
Sbjct: 62  LLLPLGLFIGILMSYGRLYVESEMVILSACGVGPAKLARFTLAPAFLIMLIVAGLSLFIT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPN-NTLQGIFIVDSRD 180
           P+  +  + L    Q       L    F    DD  +   +  +P    L+ +F+   + 
Sbjct: 122 PQGAARSEALLNDPQALQGLQLLAAGRFQPRGDDGTVTYAADIDPEAGDLRQVFLYAPKS 181

Query: 181 TQTHK----IYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
               +    +  A+ GS+ +D     + + L+ G     +P   D  ++ F  +      
Sbjct: 182 ADDERAVAGVTVARRGSVVVDEATGARYLELSHGYRFSGTPGRADYRVVSFGQFGQLLPE 241

Query: 233 ANSSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             S       + +    LL + +P +           R+  H RL+  L   +  +++++
Sbjct: 242 EPSMARSEPVDAKPTRQLLESRDPED-----------RAALHWRLSVAL---MVPIVALL 287

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
           A        +R +   +  +L +     +  + I   + +    I  +Y
Sbjct: 288 ALSLSKTNHRRGRYIKLAPALLLHLCYLFLLASIRTSVAEGDADISQMY 336


>gi|183221200|ref|YP_001839196.1| putative permease [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911291|ref|YP_001962846.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775967|gb|ABZ94268.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779622|gb|ABZ97920.1| Putative permease; putative membrane protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 530

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 38/288 (13%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
               +YIL+ I   FL++  F   I   + I + I L          LL   GY+    L
Sbjct: 38  SILRIYILKEILSPFLVALSFFTMIYMAVAIQKMIGLFVGKGVDFFRLLDYMGYVFGNTL 97

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    M        ++ ++E+  +  +G S   +    L    L+++ +      +
Sbjct: 98  PMTIPMACLMSGIMAAGRLSGDSEITAMRASGVSFPYIYSNFLVFGFLMTLIVGYLNFYL 157

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR-------LDDDLYIKISKYNPNNTLQGIF 174
            P+    +K              ++   F          +    +     +    L  + 
Sbjct: 158 GPENTRKMKDFDNWIATYNPLLAIQPGQFSGDKTQDFFSEKGRTMYSGGVDEEGNLSNVQ 217

Query: 175 IVD-------------------SRDTQTHKIYYAQSGSIDLDRQA-------IILNDGEV 208
           I +                      ++  ++  A+ G +   + A       + L  G V
Sbjct: 218 IREWAISAAGTDFIMVNNLAVPMGGSKMLQVINAKEGLLVEKKNAAGEYEKSVRLKKGYV 277

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSST-----IVLKANDQNLSFLL 251
               P +  I I  F +  +   +          I +K +  +L  L+
Sbjct: 278 IEWDPETNAIGITNFMNGEMDYNTPAKKESKTLSINVKPDTFSLPMLI 325



 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            L        N   + L  +  E HKR    L   IF  +S        +V++  K    
Sbjct: 386 ALFTQLSELLNESKKTLTGFNVEIHKRFATPLSCQIFFFLSF---PLGLVVKRSGKGMSF 442

Query: 309 FISLSISFGVFWGFSY--IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
            +++      +  F +   I   E  P ++      +   +    +MI +   K+
Sbjct: 443 TLAVVFLLIYYTFFIFGSGISYKENVPDWVGPWSANIVIATLSIYIMISRTDAKL 497


>gi|150002748|ref|YP_001297492.1| hypothetical protein BVU_0142 [Bacteroides vulgatus ATCC 8482]
 gi|149931172|gb|ABR37870.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 632

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 4   IKKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK +  +  L    +       + E +F+   +   I + + +     L+ + I +  
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE 207
           D  +   I +A  G +++        + L +GE
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLYLHLYNGE 216



 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F SYTL  +     +   +   + L+   +            +  + +++HK++T  L  
Sbjct: 324 FNSYTLAEKDKTLGSAADRT--EALASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSC 381

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYL 341
           +IF  I    A   A++R+     P+ +S+ I    +   S      +      +  +++
Sbjct: 382 LIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWM 438

Query: 342 FLFCISSIFLLMIKKK 357
               ++ I      K 
Sbjct: 439 STIVLAPIGAFFTYKS 454


>gi|91774576|ref|YP_544332.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
 gi|91708563|gb|ABE48491.1| permease YjgP/YjgQ [Methylobacillus flagellatus KT]
          Length = 356

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 138/363 (38%), Gaps = 12/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  S ++  L ++ +     ++Q +  +      ++ +L       P  
Sbjct: 1   MKLLNRYLAQEIVSSIMLIMLALLAMFSFFDLIQELESLGKGNYGISKVLLYVLLSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    + T   L   +R +EL+I+  +G S   +   +L + ++ ++  F+   +
Sbjct: 61  VYEVVPVAVLVGTMYALGQFSRYSELIILRVSGISIRKIAFSLLRVGLVFAVITFLVGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      +++  +A  ++        L+ + D + ++ +    P+ +L  I I +  +
Sbjct: 121 IAPMSEKAAQRIRIQATDSVVAQDFRSGLWVK-DGNSFVNVQNVMPDASLMDIHIYEFDN 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ-TESANSSTI 238
               +    A+ GS D +   +     +V +     + I    F+  T Q         +
Sbjct: 180 EFRLRTISNAKEGSFDGNSWNLH----QVTQTHFEEQKIRTNVFQEATWQSLIRPELLNV 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +L   ++  ++ L    N+     +    ++     ++   L  ++  ++++        
Sbjct: 236 LLVVPEKMSAWNLYFYINHLASNKQKTSRHQIALWSKMIYPLACLVMVILALPFGFL--Q 293

Query: 299 VRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R       IF  + +          F ++    + +P +  ++   LF  + IF+L   
Sbjct: 294 QRSSSASTKIFSGIMLGIVYQVLNRVFVHLGLLNDWSPLFSAVMPTLLFMAAGIFMLYWV 353

Query: 356 KKY 358
           ++ 
Sbjct: 354 ERR 356


>gi|260914417|ref|ZP_05920886.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
 gi|260631518|gb|EEX49700.1| YjgP/YjgQ family membrane protein [Pasteurella dagmatis ATCC 43325]
          Length = 358

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 141/360 (39%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+ + I  +   + + +V ++ +I+ +++  LV   T  +   +  +   +P  
Sbjct: 4   MNTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRLVGKGTYDIWQAIAYTVLTMPKD 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR+ +   V+  AI L I        
Sbjct: 64  VETFFPMAALLGSLIALGNLASRSELIVMQASGFSRLKIGLAVMKTAIPLVIITMAIGEW 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   + +  + +   D +I + +   +  L  I+I     
Sbjct: 124 GIPQTEQFARDMRSKAMTGGSLLSVRDGFWAKEGSD-FIYVKRITDDLELNDIYIYSFGE 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           + Q  ++ +A S   +  +  +  LN+ E+       K ++ +    +       N    
Sbjct: 183 NRQLKQVKHADSAVYEEGKWVLHQLNESEI--TPDEIKTVNRLN-SEWKTSLTPDNLGIA 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
            L+    ++S L N          +  + +   + ++L Q +   +  +++   +    R
Sbjct: 240 SLRPTSLSISGLSN-YIAFLKDTGQESKKFELTYWRKLFQPISVGVMMMLALSFIFGPLR 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           ++    + +  IF    + + V   F  +       P    ++   +F + + +LL  K+
Sbjct: 299 SVTAGARIVTGIFFGF-LFYVVNEIFGPLSLVYNVAPLAGALMPSVMFLLITWWLLSRKR 357


>gi|21674368|ref|NP_662433.1| hypothetical protein CT1549 [Chlorobium tepidum TLS]
 gi|21647546|gb|AAM72775.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 384

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 126/360 (35%), Gaps = 19/360 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R     FL +      +  +I +++ ++       S   +L      +P   
Sbjct: 28  TIIDRYIARQFLTIFLFALASFAALFILINLVENLDRFLDRHISFGRILIYYLSGLPDTF 87

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            + +P    + +  V   ++  +EL  + + G S   L+KP L + + ++    I+   I
Sbjct: 88  LLTSPLSVLLASLFVTGKLSMQSELPALKSAGMSLSRLMKPFLLVTMAIAALNTINSCFI 147

Query: 122 EPKCR---STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD 177
            P         ++   K Q       L      R  ++  + ++K  P+  +   + +  
Sbjct: 148 APAMYDWSKGFEKRYLKKQQDNGEEPLH----IRESNNRILTVAKIGPDKKSATTVSLET 203

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-KSYTLQTESANSS 236
              +Q      A S  I    +  I  + +    S  ++ +       +  L        
Sbjct: 204 FNGSQIVSRIDADSLRIITRHKYWIFYNTKQRTFSKGAETLVTRAGADTLKLSLAPNTFK 263

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I    ++ N+   ++            LE    + H +L   L  +I  LI +      
Sbjct: 264 MIDTDPDEMNIVQHIDFIWQKARSGLPGLERATVKLHTKLALPLASMIIVLIGV-----P 318

Query: 297 ALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFL 351
              ++++    + IS+S+  G ++ G    I  +  +    P+L  +    LF I+  FL
Sbjct: 319 LSSKKKRSGLAVEISISLLIGLLYLGMLKTIGSLGYDGLLNPVLAAWLPDILFIIAGTFL 378


>gi|294776418|ref|ZP_06741896.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|294449744|gb|EFG18266.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 640

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 12  IKKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTL 71

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+
Sbjct: 72  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 131

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK +  +  L    +       + E +F+   +   I + + +     L+ + I +  
Sbjct: 132 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 191

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE 207
           D  +   I +A  G +++        + L +GE
Sbjct: 192 DGFENAHIIWASEGKMEMTADKQHLYLHLYNGE 224



 Score = 39.6 bits (91), Expect = 0.74,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F SYTL  +     +   +   + L+   +            +  + +++HK++T  L  
Sbjct: 332 FNSYTLAEKDKTLGSAADRT--EALASEWSMKSYQTTDADNNIRKHEADWHKKITLSLSC 389

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYL 341
           +IF  I    A   A++R+     P+ +S+ I    +   S      +      +  +++
Sbjct: 390 LIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWM 446

Query: 342 FLFCISSIFLLMIKKK 357
               ++ I      K 
Sbjct: 447 STIVLAPIGAFFTYKS 462


>gi|212690931|ref|ZP_03299059.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
 gi|237712585|ref|ZP_04543066.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726895|ref|ZP_04557376.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752264|ref|ZP_06088057.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212666163|gb|EEB26735.1| hypothetical protein BACDOR_00419 [Bacteroides dorei DSM 17855]
 gi|229435421|gb|EEO45498.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453906|gb|EEO59627.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263237056|gb|EEZ22526.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 632

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 87/213 (40%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 4   IKKLDIFILKSFLMLFIGTFFICLFIFMMQFLWRYVDELVGKGLEMSVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +I+P++     L    F  +N+
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPLIIFCTFLCCTSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK +  +  L    +       + E +F+   +   I + + +     L+ + I +  
Sbjct: 124 IAPKAQIKLLTLLVSMKQTSPELDIPEGVFYDEIEGYNIYVKQKDRETGMLKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGE 207
           D  +   I +A  G +++        + L +GE
Sbjct: 184 DGFENAHIIWASEGKMEMTADKQHLYLHLYNGE 216



 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F SYTL  +     +   +   ++L+   N            +  + +++HK++T  +  
Sbjct: 324 FNSYTLAEKDKTLGSAADRT--ESLASEWNMKSYQTTDADNNIRKHEADWHKKITLSISC 381

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYL 341
           +IF  I    A   A++R+     P+ +S+ I    +   S      +      +  +++
Sbjct: 382 LIFFFIG---APLGAIIRKGGLGMPVVVSVLIFVIYYIIDSGATRVAKSGEMNMVLGVWM 438

Query: 342 FLFCISSIFLLMIKKK 357
               ++ I      K 
Sbjct: 439 STIVLAPIGAFFTYKS 454


>gi|224026840|ref|ZP_03645206.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
           18228]
 gi|224020076|gb|EEF78074.1| hypothetical protein BACCOPRO_03597 [Bacteroides coprophilus DSM
           18228]
          Length = 631

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 89/225 (39%), Gaps = 6/225 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++L+     F  +    +FI  +  + + ++ +      + +L +       T+
Sbjct: 4   IKKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEIKVLAQFFFLSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +++PV+   +LL +  F  +N+
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIMQPVILFCVLLGLTSFFFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + PK +  +  L    +       + E +F+   D   I + + +     L+ + I +  
Sbjct: 124 VGPKAQKELWTLIVSMKQKSPEVDIPEGVFYSDIDGYNIYVKQKDRETGILKDVLIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDIS 219
           D  +   I +A  G ++L        + L +GE          +S
Sbjct: 184 DGFENAHIIWAAEGKLELTADKQHLYLHLYNGEQFENLKSQAGLS 228



 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 216 KDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE----LLETYRSE 271
           + +S++   S    T ++      L   +  LS L + + +  +Y  +     +  +RS+
Sbjct: 314 EKLSVINIDS-VFNTLTSAEKLKTLSTCENRLSSLSS-DWSMKSYLTKETDANIRGHRSD 371

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           +HK++T  L  +IF  I    A   A++R+     P+ +S+ I    +   S      + 
Sbjct: 372 WHKKITLSLACIIFFFIG---APLGAIIRKGGLGMPVVLSVLIFILYYIIDSGATRVAKS 428


>gi|323144743|ref|ZP_08079320.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
 gi|322415494|gb|EFY06251.1| permease, YjgP/YjgQ family [Succinatimonas hippei YIT 12066]
          Length = 336

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 116/332 (34%), Gaps = 26/332 (7%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++ I+  +  T  ++I+  ++ Y +P +  ++ P    +     L  +  ++E++++ +
Sbjct: 1   MIRLISRAAVGTVPVDIITNLAAYAVPEIAMIMLPLTLFLACLITLGRICSDSEMVVMRS 60

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G S   ++   + LA   SI    +   + P   +  + L  + +    F  +E   F 
Sbjct: 61  IGFSPANVMTIAMILAFFTSIVTAFNCIYLVPWASNAKETLMKQTENNPQFLPIESGKFS 120

Query: 152 RLDDDLYIKI----SKYNPNNTLQGIFIVDSRDTQTHKIYY-AQSGSIDLDRQAII---L 203
            +     I I     K +    +  +F+++S           A +G +  D   ++   L
Sbjct: 121 SM-GGYNIYIENVEEKSDGEKNIANVFVMESPFANVGNSMTIADNGYLVHDENGVLWLEL 179

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA-NDQNLSFLLNPNPNNPNYRP 262
           + G            +   F  +      +NS      + + ++   LLN          
Sbjct: 180 DKGSRFEVLTKDGTSNKAIFDKFRAPVAGSNSELQEDDSISSRDTFELLNSGEK------ 233

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                   E   RL+      I   I+I         RQ +    +   L  +   ++ F
Sbjct: 234 ----RGIVEAQWRLSPIFAVFILTFIAIP--LSMVNPRQGRFARLMPAILIYA--SYYMF 285

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 +  +  +   LY  LF +  +FL  +
Sbjct: 286 LLSCRNMINSGSWP--LYPGLFIVPVVFLFFV 315


>gi|88808511|ref|ZP_01124021.1| possible permease [Synechococcus sp. WH 7805]
 gi|88787499|gb|EAR18656.1| possible permease [Synechococcus sp. WH 7805]
          Length = 388

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 127/365 (34%), Gaps = 22/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      ++  V  + + +  +  S   + I +++    +P+ L
Sbjct: 18  LLDRWLLGELLGPLLFAVAAFTVVSLSVGVMFELVRQIVESGLPVGIAVQVLLQRLPSFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    M +    + ++ N+EL  + + G +   +I P L LA+++S   FI  + +
Sbjct: 78  VISFPMATLMASLLAYSRLSANSELTALRSVGVTATRMIVPALILALVMSGLTFIFNDAL 137

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-------------YIKISKYNPNN 168
            P+   + +   A+A      +    N+ +     L                  K+  + 
Sbjct: 138 VPRANRSAETTLARALGKAIATEKGTNIVYSRFGRLQETDGTSNKGLAQLFYARKFR-DG 196

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            +  + ++D       ++  A     +  +      DG++   +P     S   F  Y  
Sbjct: 197 VMNEVTVLDFTRAGFTQMLVADRAVWNESQAKWQFFDGQILTLTPSGSTTS-ADFDQYLY 255

Query: 229 QTESANSSTIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +A      L  +  N++    L   +        +          ++ T  +  ++F
Sbjct: 256 PLSAAPIRIAKLPKDANNMTVVEALQAKDLLQQAGDIKEARRLEVRIQEKFTLPMACLVF 315

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
           GLI      K      R +   I + L +   V++  S+    +       P+L  +   
Sbjct: 316 GLIGASLGAKPNNRTSRSQGFGISVVLIL---VYYVLSFSFSSLGVKGTLPPLLAAWSPV 372

Query: 346 ISSIF 350
           + S+ 
Sbjct: 373 LISLA 377


>gi|261364966|ref|ZP_05977849.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
 gi|288566764|gb|EFC88324.1| permease, YjgP/YjgQ family [Neisseria mucosa ATCC 25996]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 128/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ ++        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFALATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + + A      +     L+ + + +  I + +  P++TL GI I +  D
Sbjct: 121 IAPVLSQKAENIKSTAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWERND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           K +  ++  L   ++   NN     +  + Y   + ++L   +   +  L++        
Sbjct: 239 KPDQMSVGELTTYISHLENN----NQNTQIYAIAWWRKLVYPVAAWVMALVAFAF--TPQ 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R       +F  + +     +    F +        P+    L    F + +++L+  
Sbjct: 293 TTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRR 352

Query: 355 KKKY 358
           +++ 
Sbjct: 353 QERR 356


>gi|330975728|gb|EGH75794.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 243

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 11/232 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFI------VD 177
            +    L  +      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSSD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDISIMKFKSY 226
                   +  A+ G  ++       +IL +G  +  +P + D  ++K+ +Y
Sbjct: 185 KSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTY 236


>gi|262068069|ref|ZP_06027681.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
 gi|291378155|gb|EFE85673.1| permease, YjgP/YjgQ family [Fusobacterium periodonticum ATCC 33693]
          Length = 363

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 135/364 (37%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++        +      L+P +
Sbjct: 2   IKKLDIYISKYFIKYFLMNIIGFMGVFLLAQTFKIIKYINQGKLEGGEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIK----ISKYNPNNTLQGIFI 175
           I  K  + I      +   +L     +EN FF  ++D YI     I++         I +
Sbjct: 122 IYTKSLAKINFYRKGEIDASLRLPKTKENAFFINNNDGYIYLMGNINRETGLAEKVEIVV 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN- 234
            D+  ++  +I  AQSG  D + +  +L+   ++      K I+ +++ S     +  N 
Sbjct: 182 YDTEISKPVEIITAQSGKYDKENKKWLLSGVNIYNVE-TKKSITKVEYDSDRFGEDPNNF 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                       +  L        N   E    Y SE  KR +      I   I +    
Sbjct: 241 IRAAAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLSELAKRYSFPFASFIVAFIGLSV-- 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL 352
               VR  +    + I +   +G +   S     +  N    P +  ++       I + 
Sbjct: 298 SSKYVRGGRTTINLVICVVAGYGYYLV-SGAFEAMSLNGILNPFISSWIPNILYFIIGMY 356

Query: 353 MIKK 356
            + +
Sbjct: 357 FMNR 360


>gi|297537470|ref|YP_003673239.1| permease [Methylotenera sp. 301]
 gi|297256817|gb|ADI28662.1| permease YjgP/YjgQ family protein [Methylotenera sp. 301]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 132/364 (36%), Gaps = 18/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F   +L  +  +   + L ++ I    +    + L +      + +  I G+ I   +P
Sbjct: 2   LFRRSLLHELIATASGTFLILIGIVIAQRAGYLVQLAAKGVLPNDAITTILGFNIIRFMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++      +     L+   R++E++I  + G S  + I+P+L  A  + + +      + 
Sbjct: 62  LLLSLSLFLAILLTLSRWYRDSEMVIWFSAGLSITSWIRPILVFATPIVVIIAFLSLFVT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNP-NNTLQGIFIVDSRD 180
           P   + ++    + +     + +   +F      D    I  ++   N ++ IF+   + 
Sbjct: 122 PWATNKVEDFRVQLESRDDLAAISPGVFKESAHADRVFFIESFDELGNIVKNIFVQSIQH 181

Query: 181 TQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   I  AQ   +        +++  G  +  +  + + S  +F+ Y ++ E++ +   
Sbjct: 182 QKLGIIVAAQGSRLVEKNGDNFLLMEHGHRYEGARGTSEYSTTEFEKYAIRVEASEAKRE 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  +   L+    NN            +E   RL     PV   +++++A    AL
Sbjct: 242 PPSTQSISSRDLIMNKSNNN----------IAELQWRLA---MPVSALILALLAIPLSAL 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKKK 357
             +  +     +++ I        + I   I Q     I  L+       ++   M  ++
Sbjct: 289 DPRAGRSANFALAIVIYIIYNNLLNIIQAWIAQGKVSGIIGLWPIHLVFGTLVFYMFYRR 348

Query: 358 YTKI 361
             ++
Sbjct: 349 ALQL 352


>gi|332290236|ref|YP_004421088.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
 gi|330433132|gb|AEC18191.1| putative permease YjgP/YjgQ family [Gallibacterium anatis UMN179]
          Length = 356

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 130/364 (35%), Gaps = 17/364 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + YI + I  +  +    +V ++ +I+ +++   +          +  +   IP  +
Sbjct: 3   NTLDRYIGKTILATIFVVLFLLVGLSAIIKFVEQFRAIGEGNYDTAKAIAYTLLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L S+  N+EL+++  +G SR  +   V+ +AI L I         
Sbjct: 63  ETFFPMAALLGALIGLGSLASNSELVVMQASGFSRFQIGLSVMKVAIPLIILNMALGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +++  K+    +   ++    +  D + ++ I      N L GI+I    ++
Sbjct: 123 IPQTEQFAREMRYKSLTGGSLLSVK-GSVWAKDGNSFVYIQHIPKENQLNGIYIYQFDQN 181

Query: 181 TQTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               K+  A   +   +           LN   +  K  ++K +         L   S  
Sbjct: 182 RNLQKMSQANRATYANNEWRFNQISESELNGDHITNKKYLNK-VWQTSITPDKLGMVSLR 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S + +      + FL N          +  +T+   + ++L Q +   +  L+++    
Sbjct: 241 PSMLSITGLSDYIQFLKN--------TGQDTKTFELTYWRKLLQPISISVMMLLALSFIF 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                        I I    +F V       +  +   P +I  L   +F  + I+ LM 
Sbjct: 293 GPLRSVTSGVRVIIGICCGFAFYVLDQVFGPLSLVYNIPPFIGALAPSIFFAAIIWWLMA 352

Query: 355 KKKY 358
            K++
Sbjct: 353 HKRH 356


>gi|167856193|ref|ZP_02478930.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
 gi|167852682|gb|EDS23959.1| hypothetical protein HPS_08256 [Haemophilus parasuis 29755]
          Length = 308

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 87/249 (34%), Gaps = 19/249 (7%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +     L      +E+ ++   G  +  L+K  LFL+I  +     +  
Sbjct: 1   MAQLMLPLSLFIALLLTLGRFYAESEITVMRACGVGQSLLVKAALFLSIFTTAVAVYNVF 60

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--D 177
            + P   +   ++ A+A+    F+ L    F        + I     +NT+  I++   +
Sbjct: 61  WLTPWAINKQSEMLAEAKANPRFAALAAGQFMS-AGGYVLFIDNI-KDNTINDIYVFQPE 118

Query: 178 SRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +      +  A+SG +       Q + L +   +  +P + D  I  F +Y       +
Sbjct: 119 QQKKNKPSVVVAKSGELQGLPNGDQMLNLTNSTRYEGTPQTADFRISHFDNYNAYLGYQD 178

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             +        +   LL+          E     ++E   RL   L   +  L+++    
Sbjct: 179 VDSDEKLVQRADFQKLLS----------ETSPEAQAELQWRLALILSVPLMALLAVP--M 226

Query: 295 KRALVRQRK 303
                RQ +
Sbjct: 227 SSVNPRQGR 235


>gi|268317250|ref|YP_003290969.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
 gi|262334784|gb|ACY48581.1| permease YjgP/YjgQ family protein [Rhodothermus marinus DSM 4252]
          Length = 361

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 127/365 (34%), Gaps = 10/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           M   + +I+R +   +L     ++    V+  ++ I+       S+  + L      IP 
Sbjct: 1   MTLIDRHIVRRLLLGYLFFTGALIVFFIVLHYVEYIDDFMDRGASMREVFLVYYPSYIPE 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    V   M +  E++ +  +G S   L++P + LA++++ F+F    
Sbjct: 61  IVRLTSPLALFLACLYVTGRMAQGLEIVALQMSGVSLYRLLRPCVALALIVTGFMFWFNG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T+     K        +   +L  +     ++ +  Y+    +     +   
Sbjct: 121 WVVPVTNRTVVAFDEKYLSKTPRQFDLSHLHRQARPGQFLSVGYYDRERRIAYRIALQQF 180

Query: 180 DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESANSS 236
                  Y   +  ++ +   QA ++ +G      P  +++   ++ +   L     + +
Sbjct: 181 AEGRRLAYRLDAPRMEWNDSLQAWVVPEGIARHFEPDGREVRRPVRRQQLDLPLYPRDLA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +     L                 L      ++ +       +I  LI +  A  R
Sbjct: 241 RTEREVEAMTLPDAAAHLAALRRSGAGHLGRPLVAYYSKFAYPFANLILVLIGVPLASVR 300

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
              R+  +   I I L ++F  +     +I          P+L  +L      +  L+++
Sbjct: 301 ---RRGGQAVQIGIGLGVAFA-YLALQKLIEPFGYTETLPPLLVAWLPHLVFLAGALVLV 356

Query: 355 KKKYT 359
            +  T
Sbjct: 357 ARTRT 361


>gi|213423383|ref|ZP_03356371.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 285

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 22/277 (7%)

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
            +E+ ++   G S+  L+K  + LA+   I   ++     P       ++ A+A+     
Sbjct: 1   ESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGM 60

Query: 143 SYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGS---IDLD 197
           + L +  F +  +   +   +    +    +F+   R        +  A SG    +   
Sbjct: 61  AALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDG 120

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q + LN G     + + +D  I  F++Y         +      +  ++  L N + + 
Sbjct: 121 SQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND- 179

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                      R+E H R+T      +  L+ +         RQ +      +S+  +  
Sbjct: 180 ---------RARAELHWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAML 223

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++  F  I   I+ N     +  +      ++  L +
Sbjct: 224 LYLLFFLIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 260


>gi|332290859|ref|YP_004429468.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168945|gb|AEE18200.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 528

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 93/236 (39%), Gaps = 15/236 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  +   I  ++      ++++K   + +P+++ +V P    + +     +   N
Sbjct: 1   MFIFVLQSVWLYIQELAGRDLDFDVIIKFLLFAMPSLVTLVLPLSVLLTSIMTFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +K V++  I L+I  F+  N I P  +   + L           
Sbjct: 61  YEFAAMKSTGISLQRAMKSVIYFVIFLAIGSFLFANHIIPASQIEFRNLRRNIGKLKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDSRDT--QTHKIYYAQSG----SID 195
            +    F  + +D  ++++K   + +  L+ I I  +       + +  A  G    SID
Sbjct: 121 LIRSGQFNEITEDFNMRVAKKYGDRDQYLRDIVIHQAEKGRMGNYTVIIASEGELISSID 180

Query: 196 LDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
               ++ L DG  +        K    +  +   F++YTL  + +    + L   D
Sbjct: 181 SPTLSLKLTDGNYYTEVQKKDYKERKKEPFAKSYFETYTLNIDLSELDAVDLDDKD 236


>gi|253702061|ref|YP_003023250.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
 gi|251776911|gb|ACT19492.1| permease YjgP/YjgQ family protein [Geobacter sp. M21]
          Length = 360

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 143/370 (38%), Gaps = 23/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI R   +   +     + I  V+  +++++  + +  S   L       IP +
Sbjct: 1   MTILTRYIARAYLKMLSLCLGSFLTIYLVVDFMEKVSRFTRAGASWKHLALFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L +++  +EL  I + G S   +  P+L +++L+S+ +      
Sbjct: 61  IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120

Query: 121 IEPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIV 176
           + PK  +  +    +    + + +  + ++N++FR ++   ++ S + P  N L+GI + 
Sbjct: 121 VLPKSFAQ-RTYIQEVLIQKKSASAFFRQQNIWFR-EEGTVLRASLFEPARNELKGITLW 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQTES 232
           D +      +   ++    L  +  +L D  V +        ++    +  +   LQ + 
Sbjct: 179 DLQPGTGEPLKRTEADLALLGPKGWVLRDAVVRQFRDGEVSATQKYRELPVQ---LQLKP 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A+  T+   ++  +L  L N               Y ++ H R++      +   + I  
Sbjct: 236 ADLKTLGKYSDSMSLVEL-NRYCRKLRASGYDPTRYVTQMHSRISMPFGCAVMAFLGIPF 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFL 351
           A +              I+  +   +  GF Y I++ +  +   + +L   +   ++ F+
Sbjct: 295 ALRGG--------RSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFI 346

Query: 352 LMIKKKYTKI 361
             +   +  +
Sbjct: 347 FFVAGAWLSL 356


>gi|226951739|ref|ZP_03822203.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|226837529|gb|EEH69912.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
          Length = 340

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 113/327 (34%), Gaps = 16/327 (4%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+++     +       +LL I  Y +P  L ++ P  F +    V   +  + E+ +++
Sbjct: 4   QLIKIFGRAAQGRLDGGVLLSIIAYRLPEFLTLILPLGFFIGLMLVFGRLYVDHEMAVLN 63

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
            +G SR  L + +L +  +  I   +             + L     +   F  +    F
Sbjct: 64  GSGVSRNQLTRLLLPMTAVFLIVQAVLMCWGASAGIRGYQSLMQTQAVRAGFDLVRPKEF 123

Query: 151 FRLDDDLYIKISKYNPNNT-LQGIFIV--DSRDTQTHKIYYAQSGS---IDLDRQAII-L 203
                   I     + +   L+ IF      R+ +  ++  A+  +   I+ D  +++ L
Sbjct: 124 ISSGS-YTIYAGSLSEDRKNLKDIFYYYKSDREDKPDQMILAKEATRVEIENDTASVVDL 182

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
             G  +   P     +  +F+SY L+ E+               S  +     +  ++  
Sbjct: 183 VQGRRYEIYPNQPRYTQAEFQSYRLRLENDKDVNFE--------SEDVEALSMSKLWQKR 234

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                R E   R+      V+   +++  ++      +  ++ P     +    +     
Sbjct: 235 DDFVVRGELGWRIFGPFVMVVALFLAVALSEVSPRQGRYYRLIPAIFIFASLIVLMIAIK 294

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIF 350
             I K E + +  P + L     +++F
Sbjct: 295 TRISKEELDIWAYPAVLLIYGIAAALF 321


>gi|251791280|ref|YP_003006001.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
 gi|247539901|gb|ACT08522.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
          Length = 370

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 135/367 (36%), Gaps = 25/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L L++L +     +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKSVLLKAALLLSLLTASLATANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P       ++ A+A+     + L E  F +  D   +       +   + +F+     R+
Sbjct: 122 PWSSRHQDEVLAQARANPGMASLAEGQFQQTQDGNSVLFVGKVNSGDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F +Y         + 
Sbjct: 182 NTRPSVVVADRGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQPVAV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +L  L   +              R+EFH RLT  L  ++  ++ +       
Sbjct: 242 DPSNVEQMSLKTLWESSD----------IAARAEFHWRLTLILSVLVMAVMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  N       P+++++L  +  + L +I
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLALAVI 344

Query: 355 KKKYTKI 361
              +  +
Sbjct: 345 LNLWDSV 351


>gi|189500954|ref|YP_001960424.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
 gi|189496395|gb|ACE04943.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides BS1]
          Length = 360

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 130/363 (35%), Gaps = 21/363 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    +++ + +  V +  V+ +++ +            ++     LIP  
Sbjct: 1   MKLLDKYIARQYFTTYVFAGISFVSLFIVVSLIENLGSFIDKGIEAEQIILYYWSLIPET 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    + +  +   ++ ++EL  +   G     L+KP L +A+L+S F  ++   
Sbjct: 61  ILLTSPISSLLASLYITGRLSGSSELTAMKTAGAGMHQLLKPFLAVALLVSFFNILNAGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLYIKISKYN-PNNTLQGIFIVD 177
           + PK  + +K          TF  +  +    + +  +  + I   +  NNT   I +  
Sbjct: 121 LYPKA-AALKNRFETQYFDKTFENISSSNNLHILESRNRILSIGSLDQQNNTGLNISLET 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILN---------DGEVHRKSPISKDISIMKFKSYTL 228
               +      A+  S D      IL+         +G  +  +P +         + TL
Sbjct: 180 FEGPEIASRIDAKKISYDETLDRWILHETRTRVFSQNGMSYTLNPGN--------DTLTL 231

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
              + +   + ++ ++ ++                 L+    +FH +L   L  VI  L 
Sbjct: 232 SLSATSLRDLSIQPDEMDIMQHYRYIDEKREAGFSNLDRVIVKFHNKLALPLASVIVILT 291

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            +  + ++       +      +  I  G+    S   ++   +P     L   LF    
Sbjct: 292 GVPLSARKKRSGLAIEFGISLFTGFIYLGLQRTLSTAGYRGLLDPVLAAWLPDLLFLAVG 351

Query: 349 IFL 351
           I +
Sbjct: 352 IAI 354


>gi|325578599|ref|ZP_08148699.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|301156461|emb|CBW15932.1| conserved inner membrane protein [Haemophilus parainfluenzae T3T1]
 gi|325159835|gb|EGC71965.1| YjgP/YjgQ family membrane protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 359

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 128/361 (35%), Gaps = 9/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   +   +V ++ +I+ +++   V   +  +   +  +G  IP  
Sbjct: 3   MNTLDRYIGKSILGAIFATLFTLVGLSAIIKFVEQFRSVGKGSYDIWQAVAYTGLTIPKD 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I    
Sbjct: 63  VETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGLAVMKTALPLVLFTMIIGEW 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + +  +A    +   ++  ++ +  ++ ++ + +   +  L+ I+I    D
Sbjct: 123 GIPQTEQFARDMRTRALSGGSMLSVKNGVWAKDGNN-FVYVRRITDDAQLEDIYIYTF-D 180

Query: 181 TQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            Q +  +   A       +     L        S      +    + +           +
Sbjct: 181 EQRNLTHLKHANQAQYSAENNQWQLRQVNNSAVSKEQITTTNRLTEDWATSLTPDKLGAV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF--HKRLTQWLFPVIFGLISIVAADKR 296
            L+    ++S L          +    ++ R E    +++ Q L   +  ++++      
Sbjct: 241 SLRPTSLSISGLY---EYIAFLKQTGQDSRRFELTYWRKIFQPLSVGVMMMLALSFIFGS 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        I     F V       +  +   P ++  L   L  ++ I+ L+ +K
Sbjct: 298 LRSVTAGARIVTGICFGFLFYVVNEIFGQMSVVFNAPAFLGALMPSLLFMAIIWWLLARK 357

Query: 357 K 357
           +
Sbjct: 358 R 358


>gi|162146456|ref|YP_001600915.1| hypothetical protein GDI_0632 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543541|ref|YP_002275770.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785031|emb|CAP54575.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531218|gb|ACI51155.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 363

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 128/369 (34%), Gaps = 25/369 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+LR IG+         + +         ++   +   S N +L +    +   L 
Sbjct: 2   IIRNYLLREIGKPLAAMLGVCMALFASYSAADFLSEAVNGLLSTNTILALVTLKLLIGLE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L ++  N+E+  +     +   +++ V+ LA  ++I + +    + 
Sbjct: 62  VLVPVSLYLSIVLALGALYGNSEITALHALRVTPGMILRHVMTLAAGVAIVVGLLSLFVR 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDSRD 180
           P     +  LS  AQL+L    ++   F+ + +   +     +  P    + IF+   R 
Sbjct: 122 PWAYHQLHNLSKSAQLSLDVDAMQAGTFYVVQNGARVIFLTEREGPGTPARDIFVQVRR- 180

Query: 181 TQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +T +I +A+ G    D        + L +  V+                  +  +    
Sbjct: 181 AKTTQIIHAELGYPMTDEGKQSDVYVRLKNAHVYDIGRQPG-----------VSDKVLTV 229

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             I    N  +   L   +   P+ +          +EF  RL+  +  ++  ++++  A
Sbjct: 230 REITQDPNRHSTEPLGYSSIAAPSLQLAASHAPADVAEFQWRLSTPITTMLLAMLAVPLA 289

Query: 294 -DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             +    R  K    I I            +++ H +      +P ++     ++ +   
Sbjct: 290 RGRPRQNRYGKLGAAILIFFVYYLLYTSARTWVQHGM---VAAMPGIWWAPALLAVLTGF 346

Query: 353 MIKKKYTKI 361
           M++ +   +
Sbjct: 347 MLRDQIPAL 355


>gi|289612795|emb|CBI60020.1| unnamed protein product [Sordaria macrospora]
          Length = 187

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 77/186 (41%), Gaps = 1/186 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M S + Y+ R I      + L    +  + ++L+  + V++    ++++ ++   L+P  
Sbjct: 1   MPSIDRYMARLIAVPLFSTLLISAMLLVLDRMLRLFDFVAAEGGPVSVVWRMLANLLPEY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +        +  ++EL ++   G S   L++     A +L+         
Sbjct: 61  LGLGIPIGLMLGILLAFRKLATSSELDVMLGVGMSYWRLLRVPFIYATVLAAANLAIVGY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           I+P  R   + L  + +     + ++   F +L + + ++I +  +    L+GIF+  SR
Sbjct: 121 IQPLARYNYEALRFELRTGALGASIKVGEFTKLGERMTLRIEESRDSGADLRGIFVQASR 180

Query: 180 DTQTHK 185
                 
Sbjct: 181 PDGQWL 186


>gi|325954886|ref|YP_004238546.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
 gi|323437504|gb|ADX67968.1| permease YjgP/YjgQ family protein [Weeksella virosa DSM 16922]
          Length = 365

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 143/368 (38%), Gaps = 15/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           MK  + YI++    +F    L +  IA +I   Q+++ + S+  ++   L+    Y    
Sbjct: 1   MKILDKYIVKNFLGTFFFMVLILTSIAIIIDFTQKLDRIDSTGSTVTEALIHFYPYWGVW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    P    +      + +   TE++ + + G S   L +P + +A  L+    +  N
Sbjct: 61  IVNTFLPVAVFISVIYFTSRLTAQTEIVGMLSGGISFYRLTRPYVIVAAGLAFTAMMVNN 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFS---YLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
           ++ P       +   +  L++      Y ++ +  ++  + Y+ +  Y+         F+
Sbjct: 121 VVLPWANIKKNKYQYEHLLSMRARKEYYKQQVISAQISSNEYVFVESYDRIEKRSDSYFL 180

Query: 176 VDSRDT-QTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESA 233
               D+ Q  +   A S + D    + IL +  E    SP    I+ +  K   L+    
Sbjct: 181 YQKFDSVQLKEQIMASSFTWDDKDSSYILQNVFERKVLSPKKDSIAYLSSKKIKLKATPD 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                   A   N   L+    +  N     +  Y +E  +R++      I  ++++  +
Sbjct: 241 EILPEGYVAETMNSFELMKFIESQKNKGSANVVVYENELQQRVSSPFSTFILTILALSLS 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSI 349
            K+   R+      + + ++++F V+  FS I     +  Y  P +  ++    F + + 
Sbjct: 301 SKK---RRGGIGVNLAVGITLAF-VYIFFSQIATTFSEQGYVTPFVAAWIPNVVFGLLTT 356

Query: 350 FLLMIKKK 357
           FL   + +
Sbjct: 357 FLYFRRAQ 364


>gi|319954060|ref|YP_004165327.1| permease yjgp/yjgq family protein [Cellulophaga algicola DSM 14237]
 gi|319422720|gb|ADV49829.1| permease YjgP/YjgQ family protein [Cellulophaga algicola DSM 14237]
          Length = 359

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 135/362 (37%), Gaps = 8/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL+    +F +  L  + I  ++ + ++ N +  +   LN +L   G     +
Sbjct: 1   MTILDKYILKRYLVTFSVMLLLFIPIGIMVHLSEQYNKMQDNEAPLNEILMYLGNFSIYI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             M+ P    +      + +  NTE++ + ++G S    ++P L  A++++ F+ +    
Sbjct: 61  GSMLLPIFLFLSVIFFTSKLAGNTEIVAMLSSGISYGRFLRPYLMGAVIVAAFMLLMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +   K         + EN+F +L+ + +I +S+++P   +   F ++  +
Sbjct: 121 IVPNASKGFNEFKFKYLKKGKQDRVTENIFNQLNANDFIYVSRFDPTRDIGYNFSMEHFN 180

Query: 181 TQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y   A +           L           ++ +   +        +  + + +
Sbjct: 181 KDNVLEYKLSAANIRWIEADSIYRLTSYVKRTLKGDTEILETKRRLDTVFPFKINDLTPV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +NL  L     N        + TY    +KR T  +   I  LI++      + 
Sbjct: 241 SYVAETKNLFELNEFIANEKRKGASNINTYILVKYKRWTMPITAFILTLIAVAV---SSQ 297

Query: 299 VRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+      +   + ++F   +    F  +  +   +P    I+   LF   + +LL   
Sbjct: 298 KRRGGMGVNLAFGILVAFVYIFFDRVFGTLAEQSGFSPLLAVIVPNVLFGFLAFYLLQKA 357

Query: 356 KK 357
           K+
Sbjct: 358 KR 359


>gi|52842836|ref|YP_096635.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629947|gb|AAU28688.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 333

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 126/346 (36%), Gaps = 30/346 (8%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
            Q +Q +N  +S +    +++K+    +P ++ ++ P  F +        +   +E+ ++
Sbjct: 3   NQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLYAESEMTVL 62

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G     L+K    +A ++ + + I      P       +L     +      +    
Sbjct: 63  RACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERIKLIRSTGIKTLIQTIMPGR 122

Query: 150 FFRLDDD-LYIKISKYNPNNT-LQGIFIVDSRDTQTHK---IYYAQSGSIDLDRQA---- 200
           F  ++       +   N +++  + IF+             + +A     +++ Q     
Sbjct: 123 FHAINSGQQIFYVQSMNRDHSQAEQIFMAKHSVQDNRLLWDVLWADKAFAEVNPQTGEEY 182

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNP 258
           I+L +G+ ++  P   D  I +F SY  +  +           A  ++L  L N +    
Sbjct: 183 IVLQNGKEYQGVPGHADYQIAEFASYKSKLPNPTVVMHDDARTAKTRDLWPLNNHDLKK- 241

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                      +E   R++  L  +   L+++     R   R  K    +   +   F  
Sbjct: 242 ----------AAELQWRISIPLMVLTLTLVAVP--LSRVSPRSGKYSKLLPAIIIYIF-- 287

Query: 319 FWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           +  F ++        + P++I + ++ +  ++ + +L I +   K+
Sbjct: 288 YANFMFVSRDAIATGKIPWWIGMWWVHV-AVAILGILFIWRNQVKL 332


>gi|328675790|gb|AEB28465.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida 3523]
          Length = 360

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 126/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ + K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIAKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I IS  +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDKKIIKAPDGKIIYISNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   D  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMDVNIYTKNSQNSEYSHDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+     +    +++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFND----KDNGTAFKAEFFGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L         +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMTTGSMPVWIGF-WLPHIFFIIFAVRTIRK 351


>gi|93004884|ref|YP_579321.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
 gi|92392562|gb|ABE73837.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
          Length = 428

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/407 (12%), Positives = 134/407 (32%), Gaps = 57/407 (14%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + + +  +  +   F+V +    ++++   + +     + +L  I GY +P  L ++ P 
Sbjct: 1   MTQQVASTTALVLGFLVVMMLGGRLIRYFGIAAEGNLDIGLLFTIIGYNLPYFLELILPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F +    V   +  + E+ +I+ +G SR  L + +  L + L +       + +P    
Sbjct: 61  AFFIALMLVFGRLYVDQEMAVINASGVSRGRLGRLMTPLILALFVGEAALSIVGKPWGVR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQ---- 182
           + + +  +  L   F  +  N F     + ++ +   + +   LQ + ++ S   +    
Sbjct: 121 SSENVWQQQALTSAFDLIRPNQFIS-SGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSG 179

Query: 183 ----------------------------------------THKIYYAQSGSIDLDR---- 198
                                                      I  A+            
Sbjct: 180 AKNNTAKNSAMDLENNIDVETTEQLNIPELPTALANNNISKDTITLAKRAEQVDTGNSGV 239

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND-QNLSFLLNPNPNN 257
             + L  G  +     S   + + F  Y +    ++   I     + Q +  L      N
Sbjct: 240 TQLDLFQGRRYEVGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQAATGN 299

Query: 258 PNY-RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                   +   + E   RL+     +I  ++++  A  R   RQ + +  +F S+ +  
Sbjct: 300 AQVGSNNAMRAAQGELGYRLSLPWLMIIAPMLAVPLAQVRP--RQGRWLR-LFPSILLFV 356

Query: 317 GVFWGFSYIIHKIEQ-NPYYIPILYLFL-FCISSIFLLMIKKKYTKI 361
               G   + + + + +       +L L F   ++++    +   ++
Sbjct: 357 SCALGIISLKNAVGKGSVSVWAYAWLILGFMALALYMNWGSRVQHRL 403


>gi|307250355|ref|ZP_07532304.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306857630|gb|EFM89737.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 360

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMVFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQTEQYARNMRS-IAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +  A +   + +   +       L D  + +   ++KD               + 
Sbjct: 185 KALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTT--------ITPSK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + LK    ++S L +          +  + ++  F +++ Q +   +  L++I    
Sbjct: 237 LGIVSLKPESLSISGLSD-YVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       +FI +   F  +     F  +       P  I  L   L C+S ++ 
Sbjct: 296 GP--LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWW 353

Query: 352 LMIKKK 357
           L+ KK+
Sbjct: 354 LLTKKR 359


>gi|189461471|ref|ZP_03010256.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
 gi|189431805|gb|EDV00790.1| hypothetical protein BACCOP_02127 [Bacteroides coprocola DSM 17136]
          Length = 635

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 86/213 (40%), Gaps = 6/213 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++L+     F  +    +FI  +  + + ++ +      +N+L +   Y   T+
Sbjct: 4   IKKLDIFVLKSFLLLFAGTFFICLFIFMMQFLWRYVDELVGKGLEINVLAQFFFYSGLTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G   + +I+PV+   + L    F  +NI
Sbjct: 64  IPLSLPLAILLAALMTFGNFGERYELLSMKAAGIPLLRIIRPVVLFCVFLGGISFFFQNI 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ +  +  L    +       + E +F+   D   I +   +     L+ I I +  
Sbjct: 124 IGPRAQKQLWTLLVSMKQKSPEVDIPEGVFYSDIDGYNIYVKHKDRKTGLLKDILIYNFS 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQA----IILNDGE 207
           D  +   I +A  G ++L        + L +GE
Sbjct: 184 DGFENAHIIWAAEGKLELTADKQHLFLHLYNGE 216



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
               + ++RS++HK++T  L  +IF  I    A   A++R+     P+ IS+ I F +++
Sbjct: 361 TDNSIRSHRSDWHKKITLSLACIIFFFIG---APLGAIIRKGGLGMPVVISVLI-FVIYY 416

Query: 321 GFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKKK 357
                  ++ ++     +L  ++    ++ +      K 
Sbjct: 417 IIDSGATRVAKSGEMNIVLGTWMSTIVLAPLGAFFTYKS 455


>gi|94263394|ref|ZP_01287208.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93456230|gb|EAT06364.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 124/344 (36%), Gaps = 10/344 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y++   GR+       ++ I  ++   +R++    +       ++     IP +
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDNFLDAGLGTGGAVRYLLLKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++    S   
Sbjct: 61  IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGI-FIVD 177
           + P   S + +    + +         +   ++R  + +Y      +  N L    ++  
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSYLTW 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS- 236
            RD +  ++ +A   +   D +  +L +G++  K+    D  +  F+   L      +  
Sbjct: 181 DRDYRLAQLIFAARAT--WDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPADF 238

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +++ LS L +    + +  P+  +   +  HK    ++F  +  L+  +    
Sbjct: 239 FIPPYALSERALSTLFSQATASAD-TPQRRQARLAIQHK--ISYIFLGLPLLLIGIPLLL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
                + + +     + S    + WG       +       P +
Sbjct: 296 AMSRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFV 339


>gi|293604027|ref|ZP_06686440.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817631|gb|EFF76699.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 369

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 93/243 (38%), Gaps = 6/243 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      +++L ++     T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    +KPVL +A+ +++ +     +
Sbjct: 61  LPTILAVSIFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVALAVAGLTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  S+    P + L  +F  ++
Sbjct: 121 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESSGGSRVFFSEDPVTPTDELGNVFARET 180

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   +  A S     +    + ++L +G  +   P + +I ++ F  Y L+ ES   
Sbjct: 181 -GPEWLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFNKYGLRLESKAG 239

Query: 236 STI 238
              
Sbjct: 240 GDP 242


>gi|34498371|ref|NP_902586.1| hypothetical protein CV_2916 [Chromobacterium violaceum ATCC 12472]
 gi|34104225|gb|AAQ60584.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 358

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 130/360 (36%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+  + +S L + L ++ +     +L  +  + +   +  ++      LIP  
Sbjct: 1   MKLIHRYIVSTLTQSTLFTLLALLGLYGFFDLLGEVPALGTGNYTAGVMATYVALLIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     +T +  ++E  +I  +G +   +   +L   +  ++   +    
Sbjct: 61  AYELMPLAVLIGGMVAMTQLASSSEYTVIRTSGVTLKQIAATLLKFGLGFAVLTILLGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P      ++    A  ++         + + + + +I + +  P+NTL GI I    +
Sbjct: 121 AAPWAMQEAERTRLTATHSIVAKEFRSGTWVKDNQN-FINVHEMLPDNTLLGIRIYTYDQ 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +  +   A+ G+     ++  L + +    +P     ++     +    E    S ++
Sbjct: 180 DFKLERTRIAERGTFSKQDRSWQLENVKETVLAPNRTISAVYPTLKWKSIVEPEILSVLL 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +     +   LL     +     +  + Y      +L   L  +   L+++    ++   
Sbjct: 240 VVPEQMSAHNLLT-YIEHLKKNKQQTQRYEIALWSKLFYPLACISMALVALAFTPQQRRH 298

Query: 300 RQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            Q        I L ++F  V   F ++    + N      L   +F +  I ++  +++ 
Sbjct: 299 GQLGIKLFAGICLGVTFHFVNRLFGHLGLLYDWNAILSATLPTLIFLLGGIAIIAKQERR 358


>gi|227357023|ref|ZP_03841394.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|227162826|gb|EEI47786.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 343

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 126/344 (36%), Gaps = 21/344 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I +  ++++ +          N+++ +    IP +  ++ P    +      + +   
Sbjct: 1   MLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYVE 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ +++  G  +  L++  L L++L S+    +   + P      +Q+   A+   + +
Sbjct: 61  SEITVMNACGIGKKALVQAALLLSLLTSVLAAGNVVWLIPWSSVHQEQVLEDAKANPSLA 120

Query: 144 YLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGS---IDLD 197
            L E  F    D ++ + +      N  Q +F+   R    Q   +  A  G    +   
Sbjct: 121 ALMEGQFKMSSDRNMVLYLGSV-KGNQFQDVFLAQLRPTQNQRPSVVVADKGYTKELPNG 179

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q ++L++G  +  + + +D  I  F  Y        S+    +   + ++ L +     
Sbjct: 180 NQVVVLSEGTRYEGTAVLRDFRITDFTDYQAVIGHRESTISRNRVEQKTMNELWHSTEPE 239

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                       +EFH RLT     VI  L+ +         RQ + +  +   L   + 
Sbjct: 240 S----------IAEFHWRLTLIFSVVIMALMVVP--LSEVNPRQGRVLSMLPAML--LYL 285

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
           VF+     +    +     P++ ++        L ++   +  +
Sbjct: 286 VFFLLQSSLRSSGEKGKVDPLIAMWTVNGIYFALALLLNAWDTL 329


>gi|325136762|gb|EGC59362.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M0579]
          Length = 356

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 125/365 (34%), Gaps = 16/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLLSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + +++L+ 
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAVWLIR 351

Query: 354 IKKKY 358
            ++K+
Sbjct: 352 KQEKH 356


>gi|167626384|ref|YP_001676884.1| hypothetical protein Fphi_0162 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596385|gb|ABZ86383.1| conserved membrane protein of unknown function [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 360

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 135/366 (36%), Gaps = 28/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQQAYSQGLGIDSIIKFVILTIPGNVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  +     L+I  F++   I 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGVTWMQIVKNTMKPVYALTIITFLTVMYIN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P  + T     A        S + ++   +  D   I I   +  NTL+ +F+  + D  
Sbjct: 122 PLSKQTQDIYQASLTAKALLSSITDDKIIKTTDGKVIYIKSKS-GNTLKDVFLYMATDNS 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A    + +D+ A  +  +D  ++ K P +          +T  T      TI 
Sbjct: 181 DEYKVVTAPVAEVIIDKGAAYVDFHDAHIYTKEPKT--------YEHTYDTAKNAIYTI- 231

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETY---------RSEFHKRLTQWLFPVIFGLISI 290
              +D++     N +  +  Y   L+E +         R EF  R+   +  ++  L+++
Sbjct: 232 FDTSDRD----YNHDKVDRLYMHTLIENFTDKDDGTVSRGEFFGRINNSISVIVASLLAL 287

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                R    +  K+ P  + L++       F   +    + P +I  L+L         
Sbjct: 288 ALCRLRPRQNKYAKLLPSVVVLAVYLCSNM-FVNTLMTGGKLPVWIG-LWLPHIFFIIYA 345

Query: 351 LLMIKK 356
           +  I+K
Sbjct: 346 IRTIRK 351


>gi|67924129|ref|ZP_00517574.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
 gi|67854019|gb|EAM49333.1| permease YjgP/YjgQ [Crocosphaera watsonii WH 8501]
          Length = 400

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 129/373 (34%), Gaps = 32/373 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + YI   +    L S   +  +   +  +    + V  S   L    +I    +P 
Sbjct: 27  LSLMDRYIATQLINPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPE 86

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+     G S   LI P + +++L++   F+   
Sbjct: 87  FTAYALPISVMLSTLLTYGRLSSDSELIAFRGCGVSLYRLIIPAVVMSLLVTGVTFLVSE 146

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY------------IKISKYNPN 167
           ++ P        +  +        +  +++F+   + +             +  ++    
Sbjct: 147 LVVPAANYRATGILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKQLKHLFFAEKFDG 206

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             L+ + +++  + + ++I  + S + +   +     +G +++ +P +       F+   
Sbjct: 207 QNLKNLTVLEWLENRLNRIVVSDSATWNGQEETWDFFNGTLYKLAPDASYKEADPFEHRQ 266

Query: 226 -------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                  +    +  +   + +    Q +  L     +      + L T++    ++L  
Sbjct: 267 LPLSKAAFEFALQGRDPYEMNIIQASQYMRILKMMGDD------KKLRTFQVRIQQKLAF 320

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               V+F    ++ +   +  +   +     +S+ I F  +    ++I  +       P+
Sbjct: 321 PFICVVF---GVIGSSLGSTPQNMSRATGFGLSVVIIFAYYLLG-FLIGSLGLMGLISPV 376

Query: 339 LYLFLFCISSIFL 351
           L  +L  I  + +
Sbjct: 377 LAGWLPNILGLVM 389


>gi|94266928|ref|ZP_01290581.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
 gi|93452380|gb|EAT02999.1| permease YjgP/YjgQ [delta proteobacterium MLMS-1]
          Length = 359

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 124/344 (36%), Gaps = 10/344 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y++   GR+       ++ I  ++   +R++    +       ++     IP +
Sbjct: 1   MKLLDRYLITSFGRNLATVLGGLLAIYLLVDFFERVDSFLDAGLGTGGAVRYLLLKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +NR  EL+ +   G S   +I+P+L  A   ++    S   
Sbjct: 61  IEQLLPVALLLAGIITLGLLNRRHELMALQAAGLSTRRIIRPLLLAAFACTLLGMASSQW 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGI-FIVD 177
           + P   S + +    + +         +   ++R  + +Y      +  N L    ++  
Sbjct: 121 LLPPTMSELNRLWHQEVRQQENRGIERQGRIYYRGQEGIYSFRPAADSENRLADFSYLTW 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS- 236
            RD +  ++ +A   S   D +  +L +G++  K+    D  +  F+   L      +  
Sbjct: 181 DRDYRLAQLIFATRAS--WDGRKWLLEEGQLKEKANGDDDFVVDYFERRQLALPEEPADF 238

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  +++ LS L +    + +  P+  +   +  HK    ++F  +  L+  +    
Sbjct: 239 FIPPYALSERALSTLFSQATASAD-TPQRRQARLAIQHK--ISYIFLGLPLLLIGIPLLL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
                + + +     + S    + WG       +       P +
Sbjct: 296 AMSRGRGRDLALAIPAASFLAFITWGLWSFGQSLAAAGQLPPFI 339


>gi|145219259|ref|YP_001129968.1| permease YjgP/YjgQ family protein [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205423|gb|ABP36466.1| permease YjgP/YjgQ family protein [Chlorobium phaeovibrioides DSM
           265]
          Length = 360

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 121/353 (34%), Gaps = 21/353 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI +   ++F+ + +  V +  +I +++ +            ++      IP  
Sbjct: 1   MKILDRYIFQQFVKTFVFTTITFVSLFILINMVENLGDFMDRKLLFTDIVLYYLRAIPDT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + + +P    + +  V   +  ++EL  I + G S   L+ P L   I++S    I+   
Sbjct: 61  ILITSPVSSLLASILVAGRLAGSSELPAIRSAGVSMRQLLYPFLLGGIIISTLNIINSFW 120

Query: 121 IEPKC----RSTIKQLSAKAQLALTFS-----YLEENLFFRLDDDLYIKISKYNPNNT-L 170
           + P       +  +    K++            +E            + I + N + T  
Sbjct: 121 LAPIAAVHNHAFERDHLGKSRRNGAAEGSNLHIIEPGS-------RVVTIGRLNTSFTGA 173

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           + + I +   T       A+S   D   +   L +    R +P  ++       S  L  
Sbjct: 174 KEVSIEEFSGTGLRGRIDAESMRYDTGNKEWTLQNAAQRRFTPGGEEYQARPALSLPLSL 233

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              + + + L+ ++              +     LE    + H ++      +I  LI +
Sbjct: 234 TLKSLAELNLRPDEMQFIQHWQYLAEKKHAGFAGLERTMVKLHTKIAVPFASLIIILIGV 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                 A  ++      I ISL   F +F G    I     N    P+L  +L
Sbjct: 294 ---PLSAKKKRGGLATEIGISLFAGF-LFLGLQKTIATFGYNGVVNPMLAAWL 342


>gi|172036161|ref|YP_001802662.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
 gi|171697615|gb|ACB50596.1| putative permease YjgP/YjgQ [Cyanothece sp. ATCC 51142]
          Length = 401

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 130/373 (34%), Gaps = 32/373 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   + Y+   +    L S   +  +   +  +    + V  S   L    +I    +P 
Sbjct: 28  LSLMDRYLASQLIGPLLFSVGLVSVLGVAIGYLSDLADKVVDSNLPLIQASEILLLKVPE 87

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T      ++ ++EL+     G S   LI P + ++++++   F+   
Sbjct: 88  FTAYALPISVMLSTLLTYGRLSNDSELIAFRGCGVSLYRLIVPAVVMSLVVTGVTFLVSE 147

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY------------IKISKYNPN 167
           ++ P        +  +        +  +++F+   + +             +  ++    
Sbjct: 148 LVVPAANYRATAILVEYLQEEHPYWQNKDIFYPDYEQVVLPNGEKEKRLKHLFFAEQFDG 207

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-- 225
             L+ + +++  + + ++I  + S + +   +     DG +++ +P +       F+   
Sbjct: 208 QNLKTLTVLEWLEERLNRIVVSDSATWNGQEETWDFFDGTIYQLAPDASYKEAYPFEHRQ 267

Query: 226 -------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
                  +    +  +   + +    Q +  L     +      + L  ++    ++L  
Sbjct: 268 LPLTKAAFEFALQGRDPYEMNIIQARQYMKILKMMGDD------KKLRMFQVRIQQKLAF 321

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               V+F    +V +   ++ +Q  +     +S+ I F  +    ++I  +       P+
Sbjct: 322 PFICVVF---GVVGSALGSMPQQMSRATGFGLSVVIIFSYYLLG-FLIGSLGLMGLISPV 377

Query: 339 LYLFLFCISSIFL 351
           L  +L  I  + +
Sbjct: 378 LAGWLPNILGLAM 390


>gi|146329237|ref|YP_001210036.1| hypothetical protein DNO_1152 [Dichelobacter nodosus VCS1703A]
 gi|146232707|gb|ABQ13685.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 349

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 134/366 (36%), Gaps = 30/366 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F  Y++R I   FL   + ++ I    +    ++     + SL  + ++  +    ++ 
Sbjct: 5   IFYRYMMREISALFLAITMILLTIIISFRFSSLLSRALDGSVSLAAIGQLLIFQTANIVV 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F + +   L+ +  + E+  +   G S+  L++P+L+L + L++ L I+   + 
Sbjct: 65  ILLPVAFILASVMTLSRLYGDCEINALFAGGCSKKHLMQPILYLVLPLAVILVINTLYLL 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       QL A+++    +S+   N F  L+    +       N      FI+   D  
Sbjct: 125 PHVFERWDQLMAQSRQEALYSFFTPNQFQHLNAHNTLYTGDKINNG--FQPFIIIQNDNN 182

Query: 183 THKIYYAQSGSIDLDRQ--AIILNDGE----VHRKSPISKDISIMKFKSYTLQTESANSS 236
            + + +++ G I  ++    + L  G          P +   S     S  L     ++ 
Sbjct: 183 EYSMLWSKRGEIQKNQPEHFLHLTQGNRAAWRDDFQPQNCLFSQFAHGSLHLSQSPPSAQ 242

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +       L+  L                 R+EF KRL   L  VIF      A    
Sbjct: 243 QRLRSIATGALNQSLAH---------------RAEFQKRLNPALAVVIFSF----AVPLL 283

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLM 353
           A  R R+  +   +   I FG++     I  K+    Q P+ I    +       I +  
Sbjct: 284 AHTRPRQGRYQRLLPAFILFGIYINLLDIALKMFSRGQIPFLIGGWGIHFAAAFIIAIYW 343

Query: 354 IKKKYT 359
            + +  
Sbjct: 344 QRARKP 349


>gi|254374090|ref|ZP_04989572.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
 gi|151571810|gb|EDN37464.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3548]
          Length = 360

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 126/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYKASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+          Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFND----KANGTAYKAEFFGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANGSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|32035302|ref|ZP_00135309.1| COG0795: Predicted permeases [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208576|ref|YP_001053801.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae L20]
 gi|165976526|ref|YP_001652119.1| permease [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|190150429|ref|YP_001968954.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250151|ref|ZP_07336353.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303253324|ref|ZP_07339473.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248124|ref|ZP_07530152.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307252739|ref|ZP_07534630.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307257155|ref|ZP_07538927.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|307261583|ref|ZP_07543251.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307263772|ref|ZP_07545378.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126097368|gb|ABN74196.1| hypothetical protein APL_1104 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876627|gb|ABY69675.1| predicted permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|189915560|gb|ACE61812.1| hypothetical protein APP7_1160 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302648006|gb|EFL78213.1| permease [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302651214|gb|EFL81368.1| permease [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306855301|gb|EFM87476.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306859771|gb|EFM91793.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306864317|gb|EFM96228.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306868706|gb|EFN00515.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306870893|gb|EFN02631.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 360

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMIFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQTEQYARNMRS-IAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +  A +   + +   +       L D  + +   ++KD               + 
Sbjct: 185 KALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTT--------ITPSK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + LK    ++S L +          +  + ++  F +++ Q +   +  L++I    
Sbjct: 237 LGIVSLKPESLSISGLSD-YVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       +FI +   F  +     F  +       P  I  L   L C+S ++ 
Sbjct: 296 GP--LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWW 353

Query: 352 LMIKKK 357
           L+ KK+
Sbjct: 354 LLTKKR 359


>gi|325917726|ref|ZP_08179914.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536055|gb|EGD07863.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 360

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 126/358 (35%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + I + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVIIIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + ++  + +   L  +F+   +
Sbjct: 121 LGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKNLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
                 +  A+ G++       + + L DG       +  + D  +MKF S  +      
Sbjct: 180 KDDRLDVVTAERGAMFFEGKTDRYLRLEDGYRIEGPAAGDTLDYRLMKFASNDVALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +           + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RTHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|317401899|gb|EFV82506.1| permease [Achromobacter xylosoxidans C54]
          Length = 385

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 95/244 (38%), Gaps = 6/244 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    ++ +   + +++ +   +      +++L ++     T 
Sbjct: 20  MSLFKRSVVSEITSHAGVVFSTLLIVWLSVLLVRLLGEAAGGNIGADVVLVLAALSTITA 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    +KPVL +A+ ++I +     +
Sbjct: 80  LPTILAVSVFIAVLTTVTRNYRESEMVVWFASGLSLADWLKPVLRVAVPVAIAVAGLTLV 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  ++    P + L  +F  ++
Sbjct: 140 AAPWAYRQIGEYHERFEQRSDLSKVTAGQFAESAGGNRVFFAEDPAKPTDELGNVFARET 199

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +   +  A S     +    + ++L +G  +   P + +I ++ F+ Y L+ ES   
Sbjct: 200 -GPEWLSVLTASSAHSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVHFEKYGLRLESKGG 258

Query: 236 STIV 239
              V
Sbjct: 259 DDPV 262


>gi|188994506|ref|YP_001928758.1| hypothetical protein PGN_0642 [Porphyromonas gingivalis ATCC 33277]
 gi|188594186|dbj|BAG33161.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 651

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   L++L+      LM+     F+  +  + + ++ +     S  IL K+  Y   T++
Sbjct: 7   KRLYLFMLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKMLFYAAMTLV 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G     ++KP+ F  + ++  LFI +N +
Sbjct: 67  PMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQNDL 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
             + +     +   A+ A     + E  F+       + ++K +     L  + I D   
Sbjct: 127 MIQSQVKFYTILFSARRATPELEIPEGSFYNGIHGYNLFVAKKDRRTGMLHDMMIYDHSQ 186

Query: 181 T-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHR 210
                +I  A SG + +D       ++L+ GE  +
Sbjct: 187 GFADARIIVADSGKLKMDEGKTFLTLMLHSGETFQ 221



 Score = 39.6 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + ++++   D  +   +    +    R   +   R E+H + T   +PV   +   + A
Sbjct: 351 EARSVMINRFDTYIGECMIMKESTAFERDRRISHMR-EWHTKFT---YPVACLIFFFIGA 406

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
              A++R+     PI  S+      +   ++ +   +   + + + ++L  F +      
Sbjct: 407 PLGAIIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGFF 466

Query: 353 MIKK 356
           +  K
Sbjct: 467 LTYK 470


>gi|118497255|ref|YP_898305.1| membrane protein of unknown function [Francisella tularensis subsp.
           novicida U112]
 gi|194323557|ref|ZP_03057334.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
           novicida FTE]
 gi|208779048|ref|ZP_03246394.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
 gi|254372628|ref|ZP_04988117.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|118423161|gb|ABK89551.1| conserved membrane protein of unknown function [Francisella
           novicida U112]
 gi|151570355|gb|EDN36009.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
 gi|194322412|gb|EDX19893.1| putative permease, YjgP/YjgQ family [Francisella tularensis subsp.
           novicida FTE]
 gi|208744848|gb|EDZ91146.1| putative permease, YjgP/YjgQ family [Francisella novicida FTG]
          Length = 360

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 126/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+          Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFND----KTNGTAYKAEFFGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANGSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|34540406|ref|NP_904885.1| hypothetical protein PG0598 [Porphyromonas gingivalis W83]
 gi|34396719|gb|AAQ65784.1| hypothetical protein PG_0598 [Porphyromonas gingivalis W83]
          Length = 651

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 88/215 (40%), Gaps = 6/215 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   L++L+      LM+     F+  +  + + ++ +     S  IL K+  Y   T++
Sbjct: 7   KRLYLFMLQTFLPLLLMTFAICWFVVLMQFLWKYVDDMVGKGLSAIILSKMLFYAAMTLV 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           PM  P    + +     ++    ELL + + G     ++KP+ F  + ++  LFI +N +
Sbjct: 67  PMALPLGVLLASLMTFGNLGERLELLAMKSAGVPLYRIMKPLFFSVVAIACGLFIFQNDL 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
             + +     +   A+ A     + E  F+       + ++K +     L  + I D   
Sbjct: 127 MIQSQVKFYTILFSARRATPELEIPEGSFYNGIRGYNLFVAKKDRRTGMLHDMMIYDHSQ 186

Query: 181 T-QTHKIYYAQSGSIDLDRQ----AIILNDGEVHR 210
                +I  A SG + +D       ++L+ GE  +
Sbjct: 187 GFADARIIVADSGKLKMDEGKTFLTLMLHSGETFQ 221



 Score = 39.6 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            + ++++   D  +   +    +    R   +   R E+H + T   +PV   +   + A
Sbjct: 351 EARSVMINRFDTYIGECMIMKESTAFERDRRISHMR-EWHTKFT---YPVACLIFFFIGA 406

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
              A++R+     PI  S+      +   ++ +   +   + + + ++L  F +      
Sbjct: 407 PLGAIIRKGGLGTPIVASVLFFVLYYMVDTFGVKMAKTEEWPVWLGMWLSTFVLVPFGFF 466

Query: 353 MIKK 356
           +  K
Sbjct: 467 LTYK 470


>gi|271498968|ref|YP_003331993.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
 gi|270342523|gb|ACZ75288.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
          Length = 372

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 132/367 (35%), Gaps = 25/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETFKSQVAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ ++   G S+  L+K  L LA+L +     +   + 
Sbjct: 62  LILPLSLFLGLLMTFGRLYAESEITVMHACGLSKNVLLKAALVLALLTASLATANVLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P       ++ A+A+     + L E  F +  D   +           + +F+     R+
Sbjct: 122 PWSSRHQDEVLAEARANPGMASLAEGQFQQTQDGNSVLFVGKVNGGDFERVFLAQLHPRE 181

Query: 181 TQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +  A  G++       Q + L+ G  +  + + +D  I  F +Y         + 
Sbjct: 182 NTRPSVVVADKGTVAARGDGSQVVTLSKGTRYEGTAMLRDFRITDFINYQAIVGYQQVAV 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   +   L   +              R+EFH RLT     ++  ++ +       
Sbjct: 242 DPTNVEQMSFKTLWRSSD----------IAARAEFHWRLTLIFSVLMMAVMVVP--LSVV 289

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY---YIPILYLFLFCISSIFLLMI 354
             RQ +      +S+  +  ++  F  +   +  N       P+++++L  +  + L ++
Sbjct: 290 NPRQGR-----VLSMLPAMLLYLVFFLLQSSLRSNAGKGKLDPMVWMWLTNLVYLSLAVL 344

Query: 355 KKKYTKI 361
              +  +
Sbjct: 345 LNLWDSV 351


>gi|253997572|ref|YP_003049636.1| permease [Methylotenera mobilis JLW8]
 gi|253984251|gb|ACT49109.1| permease YjgP/YjgQ family protein [Methylotenera mobilis JLW8]
          Length = 356

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 139/360 (38%), Gaps = 18/360 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ + I  + L+  L ++ +     ++Q +  +   +  L+ +L       P  
Sbjct: 1   MKIITRYLFKEITVNVLLITLALIAMFSFFDLIQELESLGHGSYGLSKILLFVALSAPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     L  + R +EL+++  +G S  +L   ++ + +L ++  F+   +
Sbjct: 61  VYEVMPVAVLVGCMYSLGQLARYSELIVLRVSGISLYSLAATLIKIGMLFTVITFLIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      +++  KA  ++     +  L+ + D   ++ + +   + TL  I I +  D
Sbjct: 121 ITPLSEKMAQRIRIKATDSVIVQDFKSGLWVK-DGHSFVNVEEVLADTTLLNIHIYEFDD 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSST 237
               +    A  G  + ++  +     +   ++ + KD + ++                 
Sbjct: 180 KFNLRTVSHAHKGLYEDEQWHL-----KSVSQTHLDKDSNHVEHLDKATWRSLIRPELLN 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           ++L   ++  ++ L    ++     +    Y+     +L   L  ++  ++++  A    
Sbjct: 235 VLLVLPEKMSAWNLYAYIDHLAANKQKTTRYKMALWAKLVYPLASLVMVILALPFA---- 290

Query: 298 LVRQRKKIHPIFISLSISFGVFWG-----FSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            ++QR       I + I  G+ +      F ++    +  P +  I    LF +  + +L
Sbjct: 291 FIQQRATGASTKIFIGIMLGILYQTLNQTFVHLGLLNDWAPAFSAITPTALFLLGGLAML 350


>gi|161870426|ref|YP_001599598.1| hypothetical protein NMCC_1474 [Neisseria meningitidis 053442]
 gi|254805326|ref|YP_003083547.1| putative permease [Neisseria meningitidis alpha14]
 gi|161595979|gb|ABX73639.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 053442]
 gi|254668868|emb|CBA06970.1| putative permease [Neisseria meningitidis alpha14]
          Length = 356

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 124/367 (33%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     ++ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GIWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + ++   +
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAV--WL 349

Query: 354 IKKKYTK 360
           I+K+  +
Sbjct: 350 IRKQEKR 356


>gi|307246020|ref|ZP_07528102.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307255001|ref|ZP_07536819.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259437|ref|ZP_07541162.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306852955|gb|EFM85178.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306861874|gb|EFM93850.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866373|gb|EFM98236.1| Lipopolysaccharide export system permease protein lptG
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 360

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIIAMIFAVLLMSSGLVFIIKLVEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +       +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQTEQYARNMRS-IAQSGGSMLSTKGGFWAKDGNDFIYIRHIENERKLNNVSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +  A +   + +   +       L D  + +   ++KD               + 
Sbjct: 185 KALKSVTQADNAVFNGENWTLQRVQTSSLADNSIQQAKEVNKDWQTT--------ITPSK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + LK    ++S L +          +  + ++  F +++ Q +   +  L++I    
Sbjct: 237 LGIVSLKPESLSISGLSD-YVGFLKETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       +FI +   F  +     F  +       P  I  L   L C+S ++ 
Sbjct: 296 GP--LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWW 353

Query: 352 LMIKKK 357
           L+ KK+
Sbjct: 354 LLTKKR 359


>gi|121635228|ref|YP_975473.1| hypothetical protein NMC1491 [Neisseria meningitidis FAM18]
 gi|120866934|emb|CAM10694.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis FAM18]
 gi|261392197|emb|CAX49711.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
 gi|325142744|gb|EGC65119.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           961-5945]
          Length = 356

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 124/367 (33%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     ++ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GIWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + ++   +
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLAV--WL 349

Query: 354 IKKKYTK 360
           I+K+  +
Sbjct: 350 IRKQEKR 356


>gi|42526553|ref|NP_971651.1| hypothetical protein TDE1043 [Treponema denticola ATCC 35405]
 gi|41816746|gb|AAS11532.1| membrane protein, putative [Treponema denticola ATCC 35405]
 gi|325473491|gb|EGC76686.1| membrane protein [Treponema denticola F0402]
          Length = 377

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 136/371 (36%), Gaps = 18/371 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K+  +Y+ + +   F++S LF  FI +V QIL     + S       +L +  Y +P ++
Sbjct: 9   KTIFVYVFKELLLYFIVSFLFFFFIFFVNQILLMAEEILSKKAPTKDVLLLLFYSLPFII 68

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P+   + T   L   + + E + ++  G S   ++ PV  L + +S+  FI+ +I+
Sbjct: 69  ATTAPYAALIGTLMCLGRFSADHEFISMNALGISTSFILIPVFALGVFVSVGSFITNDIL 128

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+      ++      +     LE     R ++   I +S    +N++  + I+DS   
Sbjct: 129 IPRGTIKFNEVLYNIASSTPALELESYSVKRNEN--SIVVSGLIKDNSIHDLLIIDSSQR 186

Query: 182 QTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESAN- 234
              +   +    +           + + +  +      ++    ++  +S T    + + 
Sbjct: 187 GAKRFLSSSQTDVKKSNDRSIIMQLEMLNPRLLNLDLNNRSKFDVVYGESITYNVLAKDV 246

Query: 235 -----SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                SS+   K    +L   +       +  P LL  Y  E H++ +       F L++
Sbjct: 247 APKFISSSGPDKMTSYDLIKDIKQKKEAGDTSPRLLNIYIMELHRKFSVPFGAFFFVLLA 306

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY----LFLFC 345
              +       Q        +     +    G   +  +   N     +++    L + C
Sbjct: 307 FAISRAGKTYDQSTGFIVGLLISVAYWAFLIGGQMLCLESGLNINGALVMWFPNVLLVIC 366

Query: 346 ISSIFLLMIKK 356
            + I +  + K
Sbjct: 367 TAVIAIKRLLK 377


>gi|237741964|ref|ZP_04572445.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429612|gb|EEO39824.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 363

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 128/366 (34%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQ---GIFI 175
           I  K  + I      +   +L     +EN  F    D     + K N    +     +  
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEVIK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +++ ++  +I  A+S   D+D    I ++  ++           +    Y       + 
Sbjct: 182 FETQISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTK----ETVTKTEYKSDLYKDDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +  + +      +         +    E    Y +E  KR +      I   I + A
Sbjct: 238 SNFIRASAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 IYFMNR 360


>gi|77919519|ref|YP_357334.1| hypothetical protein Pcar_1923 [Pelobacter carbinolicus DSM 2380]
 gi|77545602|gb|ABA89164.1| conserved hypothetical membrane protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 362

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 125/363 (34%), Gaps = 20/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +  YIL    R F ++      +  +++  +RI+       S+ + +       P ++ 
Sbjct: 4   LYSRYILATFFRLFGLAIGAFAGLYLLVEFFERIDDFIEYHASVTLCVAYFLNKTPLIIT 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    M     L    R+ EL+ +   G S   +  P+L + +L S+ +  +  +I 
Sbjct: 64  QVAPLACLMAVFMTLGGFTRSGELVAMHAGGISLAKIAAPMLRMGLLFSLIILAANEVIV 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDT 181
           P      + +           + +++  +   +   + I +  P   TL+GI ++   D 
Sbjct: 124 PPSIQRARHILTTEVRGGPAVHYKQDKIWLRHNRSILNIRQIEPVQQTLKGITLLSF-DK 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                    +GS           D    R    S ++  +  +    + E         K
Sbjct: 183 NFRIQQRFDAGSAVYSGGRWYCQDAVTRRFDTTSGNL--LTEQRLAEKIEDLPVVPEDFK 240

Query: 242 ------ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   D  +S   +               ++ + H R+      ++   + I  A +
Sbjct: 241 VPGSKRNEDLPISE-FHRLGKKLKREGYNPTRFQVDMHARIAAPFGCLMMTFLGIPFAIR 299

Query: 296 RALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIF 350
               + R     + I++S++ G +++  +  +     +  + PI+  +    LF +   +
Sbjct: 300 ----KGRGASMALGIAISVAIGALYFILNATLLAFGYSGTFPPIIAAWSANILFLLFGTW 355

Query: 351 LLM 353
           L +
Sbjct: 356 LFL 358


>gi|62260254|gb|AAX77892.1| unknown protein [synthetic construct]
          Length = 395

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 127/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 28  ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 87

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 88  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 147

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 148 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 206

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 207 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 266

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 267 HDRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 322

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 323 NKYAKLLPSVVVLAIYLCTNM-FINTLMANSSVPVWIGF-WLPHIFFTIFAVRTIRK 377


>gi|310778172|ref|YP_003966505.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
 gi|309747495|gb|ADO82157.1| permease YjgP/YjgQ family protein [Ilyobacter polytropus DSM 2926]
          Length = 358

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 116/357 (32%), Gaps = 13/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI     +S ++S    + I  + Q+ + I  V+         +     L+P +
Sbjct: 1   MKKIDRYITMNFIKSIVLSLFGFINIFILSQLFKVIRYVTEGRFGGVDAIYYIISLLPDI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +     +  M  + E++ +  +G S   +I   + +A ++S  ++   + 
Sbjct: 61  IIKVMPLAVLLGGLMTINKMASSLEIIALKTSGISFKRIITFPILIAFIISCGVYYMNDK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK---ISKYNPNNTLQGIFIVD 177
           I P+     +++       +      +  F R  D+       I++         I  +D
Sbjct: 121 IYPESIKKSREIKRGGYEDMELPESRKKAFLRGKDNYVYYAESINRITSTAVNIEILELD 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           S   +  KI  A+ G    + +     +  V+     S   ++   +      E      
Sbjct: 181 SEFEKLTKIITAEKGIYHRENKLWKFENVTVNNLEKKS-SYTLPVMQDVRYDDEPERFLA 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +      +  + +             E    E   R +      +   + +       
Sbjct: 240 PSVNPKLLTIKEMRSTLGAIKQTGGNSREIL-MELGDRTSFSFASFVVSFLGLSLG---- 294

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R  +    + +++S+  G      YI+    +      +++ F+       L +I
Sbjct: 295 -SRYVRGASAVSVAMSVGLGYS---YYIVQASMEAISMGGVIHPFIGAWIPNILFLI 347


>gi|91203264|emb|CAJ72903.1| hypothetical protein kustd2158 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 127/363 (34%), Gaps = 25/363 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTV 60
              + Y+L+    +F +  L I     +I +LQ+++        S  +  +   YL P +
Sbjct: 3   SRLDRYLLKAFFPTFFLCLLIISGTYVIIDLLQKLDDFLEMGINSFGVASRYYAYLFPVI 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +    VL  ++RN E+L +   G S   ++ P+  + + +    F  +  
Sbjct: 63  ITQFFPAITLVAVGIVLVRLSRNKEILAMQVAGISLYRILLPIFVVTVFMGFASFGDQEW 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSR 179
           I P+    ++ +      +     L   L    +++  I+I KY N    +  +FI+   
Sbjct: 123 IVPRFAEKLEAMQQNTFDSDVQRNL---LVHDDENNALIRIWKYSNKTQKMDSVFILSRD 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK------DISIMKFKSYTLQTESA 233
           +    +       +  +     +L+    H      +       +  ++F S     E  
Sbjct: 180 ENGKKRFTLNAKKAEWIGNNTWVLSKILKHVYDERGRWVAPVHRLDTLEFVSSVTPLELG 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                    + + L+ L    P+NP  +          FH R+   L  ++   + I   
Sbjct: 240 KKKLDSSLLSLEQLNELCEKEPDNPKNKVL--------FHSRIAYTLTHIVLLFLGIPLV 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LYLFLFCISSI 349
                 R  K I        ++ GVF+  S+I   +       P+    + + LF    I
Sbjct: 292 VG--FERMSKNIFLRVSLCILACGVFYAVSFICSNLGNTGMVHPVLAAWMPIVLFGSVGI 349

Query: 350 FLL 352
           F  
Sbjct: 350 FFF 352


>gi|298369120|ref|ZP_06980438.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283123|gb|EFI24610.1| permease, YjgP/YjgQ family [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 127/361 (35%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+R +    + + L  + +    +++  +  V   + +   +++     +P  
Sbjct: 1   MKLIPRYIIRQMSVMAVYALLAFLALYSFFEVINEMGDVGKGSYTGAKMVQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ ++   +    
Sbjct: 61  AYELMPLGVLIGGLIALSQLASGSELTVIKASGMSTKRLLAVLSQFGLIFALATVVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ +  +++ I + +  P++TL G+ I    D
Sbjct: 121 VAPDLSRRAENMKASAINGRISAG-ASGLWMKEQNNI-INVREMLPDHTLLGVKIWQHDD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       +      +  L +            +S    + + +  +S     +++
Sbjct: 179 RYQLASAAEAESAALNPDGSWQLKNVSRSVLKGEQVAVSSESSQRWPVALQSGLLDVLLV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L      +     +  +TY   + ++L   +   +  L++          R
Sbjct: 239 DPDQMSVSELTT-YIAHLKSNHQKTDTYSVAWWRKLMYPIAAWVMALVAFAF--TPQTTR 295

Query: 301 QRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +F  + +     +    F +        P+   +L   +F + +++L+  +++
Sbjct: 296 HGNMGLKLFGGICLGLVFHFAGRLFGFTSQLYSVPPFLAGMLPTVIFALLAVYLIRRQER 355

Query: 358 Y 358
            
Sbjct: 356 R 356


>gi|218768539|ref|YP_002343051.1| hypothetical protein NMA1760 [Neisseria meningitidis Z2491]
 gi|121052547|emb|CAM08887.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis Z2491]
 gi|319410788|emb|CBY91173.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
 gi|325128630|gb|EGC51499.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis N1568]
 gi|325144869|gb|EGC67157.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240013]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 124/367 (33%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + ++   +
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAV--WL 349

Query: 354 IKKKYTK 360
           I+K+  +
Sbjct: 350 IRKQEKR 356


>gi|327405435|ref|YP_004346273.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
 gi|327320943|gb|AEA45435.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
          Length = 495

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 99/253 (39%), Gaps = 7/253 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQ-RINLVSSSTESLNILLKISGYLIPT 59
           MK   ++ ++  G  F +   FI  +  ++Q     I+ +      + +++++  Y+   
Sbjct: 1   MKKLTVFSIKSFGGPF-VVTFFISMVMLIMQFTWVYIDDLMGKGLGVAVIIELMFYVSAG 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++P+  P    + +   L ++  N EL  + ++G S   +++P+    I+++   F   N
Sbjct: 60  LIPLALPLAILLSSIMTLGNLAENNELTALKSSGLSLFRILRPLTQTVIVIATATFFFAN 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P        +    Q       L    + +  +   IKI K   +NT +GI I D  
Sbjct: 120 YVIPVANLKWHTIIYDIQETKVGMLLTPGSYTKEIEGYAIKI-KSGKDNTFKGITIHDYT 178

Query: 180 DTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +    K   A SG +            L++G +H +      +   + +S+    +   S
Sbjct: 179 NPNVLKTVKADSGIVYKGDDGKYLLFHLSNGIIHEELQAQAPVFTEQGQSFHPGGDFRPS 238

Query: 236 STIVLKANDQNLS 248
            T   KA    + 
Sbjct: 239 RTTQFKAATYKME 251



 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
           + Y+ EFH++       ++      V A   A++R+     P+ I+  +    F  FS  
Sbjct: 382 DLYQIEFHRKFALSGAIIVLF---FVGAPLGAIIRKGGFGAPVVIAALLFMVYFVLFSVG 438

Query: 326 IHKIEQN 332
            +    N
Sbjct: 439 QNLATSN 445


>gi|149907703|ref|ZP_01896450.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
 gi|149809373|gb|EDM69302.1| hypothetical protein PE36_07437 [Moritella sp. PE36]
          Length = 355

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 135/356 (37%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI + I  + ++    +V ++ VI+ ++++  V   T  L   L      +P  
Sbjct: 2   IKILDIYIGKAILFATMICLFTLVGLSAVIKYVEQLRAVGRGTYGLLEALMYVMLKMPRE 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L ++  ++EL++I   G SR  ++   +  AI + I + +    
Sbjct: 62  ITIFFPMAALLGALIGLGALASSSELVVIQAAGQSRFKIVLSTMKTAIPMMIIVMLMGEY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P       QL  +A    +    ++ ++ +  ++ +I I K N  + L  + I + + 
Sbjct: 122 VAPYTEQKAAQLRGEATSGQSIIRAQKGVWAKDKEN-FINIGKVNNGSELHDVTIYEFAG 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  K   A+  +     +   L D  +      S  ++    + +           + 
Sbjct: 181 NQRLVKTTQARRATY--TGKYWQLTDLRITHFERDSISVTEQATQRWDSTLTPEKLDVVT 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +   D ++S L +      +   +   +Y   F +++ Q L   +  L+++         
Sbjct: 239 IDPEDLSISGLYS-YITYLDSNKQDAGSYELAFWRKIFQPLSIGVMVLLALSFVFGP--- 294

Query: 300 RQRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  + +   I  GV  GF  Y+  +       +  L  FL  +    +  +
Sbjct: 295 -----LRTVTMGARILMGVVAGFTFYLASETFGPISLVYSLPPFLGAVVPSAIFTL 345


>gi|152998005|ref|YP_001342840.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
 gi|150838929|gb|ABR72905.1| permease YjgP/YjgQ family protein [Marinomonas sp. MWYL1]
          Length = 353

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 124/353 (35%), Gaps = 8/353 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  +FL+  + ++ + + +  +++I  V +   ++  LL++  + +P  
Sbjct: 1   MTKIDKYIASSVLWAFLIVAVVLLGLDFALTFIEQIKKV-NDNYTIQSLLQVILFRLPGK 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T   L ++   +EL ++   G     +        +L+S+        
Sbjct: 60  LAEYIPVASLIGTLMGLGTLAATSELTVMRAAGMPIWRIGFAACQPILLVSLLGMGVSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +            L   ++ + D+D ++ I   +   TL GI I     
Sbjct: 120 VAPVAEQKANLIEKFKGQESGAFSLTGGVWLKADND-FVYIDAADAVGTLYGIQIFSPDG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q   I  A S     +     LN+      +P   +   ++  ++ +     +      
Sbjct: 179 QQLKHIITATSAQ-HTEGSQWQLNNVTETIFAPDHVEKKSLEHANWNVSITPEHLFLASQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI--VAADKRAL 298
           + +  +LS L N        +      Y  EF     + +  +   L+++  V    R+ 
Sbjct: 238 EPDALSLSQLKN-YQTYLKQQKLDGAQYELEFWITALRPIASLALVLVALSSVFGPLRSS 296

Query: 299 VRQRKKIHPIFISLSI--SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               +    + I L+   +  +F   S  I+        IPI+   L  I  +
Sbjct: 297 TMGGRIFTGVIIGLAFQNALNLFGRMSVAINFPPIIGVSIPIIICLLAGIILV 349


>gi|15677421|ref|NP_274577.1| hypothetical protein NMB1571 [Neisseria meningitidis MC58]
 gi|304387020|ref|ZP_07369275.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|7226818|gb|AAF41924.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|304338892|gb|EFM04991.1| YjgP/YjgQ family permease [Neisseria meningitidis ATCC 13091]
 gi|308389705|gb|ADO32025.1| hypothetical protein NMBB_1800 [Neisseria meningitidis alpha710]
 gi|316983819|gb|EFV62799.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325130630|gb|EGC53373.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           OX99.30304]
 gi|325134626|gb|EGC57266.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M13399]
 gi|325140779|gb|EGC63293.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis CU385]
 gi|325199830|gb|ADY95285.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis H44/76]
 gi|325201753|gb|ADY97207.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240149]
 gi|325204535|gb|ADY99988.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M01-240355]
 gi|325205694|gb|ADZ01147.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           M04-240196]
 gi|325208503|gb|ADZ03955.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           NZ-05/33]
          Length = 356

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 124/367 (33%), Gaps = 18/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELIPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + ++   +
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGIPPFLAGALPTIAFALLAV--WL 349

Query: 354 IKKKYTK 360
           I+K+  +
Sbjct: 350 IRKQEKR 356


>gi|197335786|ref|YP_002155171.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
 gi|197317276|gb|ACH66723.1| permease YjgP/YjgQ family protein [Vibrio fischeri MJ11]
          Length = 358

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 123/320 (38%), Gaps = 8/320 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGRGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++++   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L          + +   ++ +  DD +I +++      L G+ +    D 
Sbjct: 123 APQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADD-FIYLARVENKEKLYGVTVWQFDDN 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
           Q  + + +A++ +    +    +ND  + +       IS  K  S    T       + +
Sbjct: 182 QELNNVIFARTATYQAAQDDWEMNDVSITQM-KDKAVISEKKVDSLDWSTTLTPDKLAVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
            +K  +Q+L+ L +   N           Y   F ++  Q +   +  L++   V    R
Sbjct: 241 TVKPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPLR 299

Query: 297 ALVRQRKKIHPIFISLSISF 316
           ++    + +  +    +   
Sbjct: 300 SVTMGARILSGVIAGFTFYI 319


>gi|296125361|ref|YP_003632613.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
 gi|296017177|gb|ADG70414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
          Length = 417

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 127/417 (30%), Gaps = 64/417 (15%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+      FL   LF  F+  +  + + I L+ ++   L + L+   Y++P  
Sbjct: 1   MKKITKYIILETIGPFLAGILFFTFVFVIQLLPELIRLIMNNGAPLLMSLETFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M +      ++ + E++++   G   + +  P++ L     +F     N+
Sbjct: 61  IAITIPMSILMASIIGYGRLSSDNEIIVMRALGFPHMRIYMPIIILGFFTFMFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDSR 179
           I  +     + L +          + +  F  + D +   I  KY  + ++  + I D  
Sbjct: 121 IMSESNYRYRALISYMVNIRPSIAVGKLEFTEISD-MGFSIGAKYADDKSISNVVIYDKS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISKDIS-IMKFKSYTLQT--E 231
           DT+  ++  A+ G    +        + L DG V          +    F S  +     
Sbjct: 180 DTK--RVITAKYGLWKNNEANSQVVTLTLYDGVVQEMPNYGFVTNDYTVFDSMDINIIRN 237

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET------------------------ 267
            +  ++      +     +L       +   + ++                         
Sbjct: 238 VSTLTSHERGLREMPSWEILKKIKEAKSNANKSVDEQITGMINNSYNNVKNTGIDITSFS 297

Query: 268 --------------------------YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                                     Y  EF+K ++     +   LI            +
Sbjct: 298 NEYIKTNSAELVSIREKAIEESVPYFYYVEFYKFISIPAACLFMVLIGAPLGIVGKRSGK 357

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                   I + I + +      +    +  P  I  ++     ++ +    + + +
Sbjct: 358 GFGFGISVIVVVIYYLLITAAELLAGGKKVPP--ILAMWFPNIVLAIMGGFFMVRSF 412


>gi|325132744|gb|EGC55427.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis M6190]
 gi|325138629|gb|EGC61188.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis
           ES14902]
          Length = 356

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 128/366 (34%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     ++ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GIWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           ++SI   +++ +  +      ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +    Y   + ++L       +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIF--ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              R       +F  I L + F +   F     ++   P ++    L     + + + +I
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLTGRFFGFTSQLYGIPPFLAG-ALPTIAFALLAVWLI 350

Query: 355 KKKYTK 360
           +K+  +
Sbjct: 351 RKQEKR 356


>gi|294670274|ref|ZP_06735167.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
 gi|291308011|gb|EFE49254.1| permease, YjgP/YjgQ family [Neisseria elongata subsp. glycolytica
           ATCC 29315]
          Length = 348

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 116/311 (37%), Gaps = 21/311 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++ +  + L +   ++ +     I+  +  V     +   +++     IP  
Sbjct: 1   MTLIARYLIKQLSITTLYAMFALLALYSFFDIVAEVGGVGEGGYTGIKMMQYVLLQIPDH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +  N+E+ +I  +G S   +I  +L   ++ +    +    
Sbjct: 61  AYQMMPLAVLIGGLIALSQLASNSEMTVIKTSGMSTKNIIAILLGFGLIFAAATALLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG--IFIVDS 178
           + P      + L   A+     +   E L+ +  +++ I + +  P+ +L+G  +F  D 
Sbjct: 121 VAPAANRYAQNLKTTAKNGKISTG-AEGLWIKEQNNI-INVREMLPDQSLRGIKVFRHDQ 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILN------DGEVHRKSPISKDISIMKFKSYTLQTES 232
            + +  + + A+S  I  D    + N      DG+  R      +               
Sbjct: 179 -NFKLAESWQAESAVIAADGGWKLANVRRSILDGDRVRTEKHDGEYWQA-------GIRG 230

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +    +++  N  +L+ L     +  + + +  + Y+ E+ ++L   +  V+  L+++  
Sbjct: 231 SLLDVLLVNPNQMSLTALTAYIKHLEDNKQQ-ADNYKIEWWRKLMYPVATVVMALVALAF 289

Query: 293 ADKRALVRQRK 303
                  R   
Sbjct: 290 --TPQSTRHGN 298


>gi|110637606|ref|YP_677813.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280287|gb|ABG58473.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 359

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 133/362 (36%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  +LYI++    ++    L  + +  VI I +++        S+  +L +     IP 
Sbjct: 1   MKKLDLYIIKKFLVTYFFVVLMFMLVITVIDITEKMEDFMKHKLSIWFILVEYYFAFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  +++P    + T  V  ++   TE++ + ++G S   ++ P L  +IL++  +F    
Sbjct: 61  MANLLSPITIFIATIFVTANLAARTEIIAMLSSGMSLTRIMYPYLIGSILIAFMVFYMSG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + P           K  +  TF Y   N+  +     Y+ I  YN   N      +   
Sbjct: 121 WLIPHGNKKRVDFE-KKYIKSTFFYEGRNVHMKTAPTTYVYIESYNSEINVGYQFTLETI 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSST 237
            D +      A   + +   +   + +  + R +    +++   +     L     +   
Sbjct: 180 IDNRLVSKLKAARMNWNDSTKKWRMEEYFIRRFTEDGKEEVFKGRGLDTALTITPKDFED 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +     ++  L N          E + TY +E ++R T     +I  LI ++A     
Sbjct: 240 TYMLFETYDMGELNNQIALLEARGSENISTYITEKYQRYTYPFSVIILTLIGVIA----- 294

Query: 298 LVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
             R+ ++   + I+       V+  F      +       P+   ++       I L+M 
Sbjct: 295 SSRKSREGAGLTIAFGFLLAFVYIIFMITSRSLANVGGIGPLFASWIPNIVFIVIGLIMY 354

Query: 355 KK 356
           ++
Sbjct: 355 RR 356


>gi|255320990|ref|ZP_05362163.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262379920|ref|ZP_06073075.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255301954|gb|EET81198.1| permease YjgP/YjgQ family protein [Acinetobacter radioresistens
           SK82]
 gi|262298114|gb|EEY86028.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 356

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 134/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + + +  +  +   L  +  +     +    L    +  P  +
Sbjct: 5   RIVAKHVTKTTALAMLGATVVLSILQVLFTYLGELGNL-KEGYNAWQALLYVLWSAPRYI 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+I+   G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVLGLGTLASNSELIIMRAAGISLWRIVGWVMRSALLLVILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ + +VD  +D
Sbjct: 124 IPVTNERAESV--KSHRSVAQLGEVKGYWSR-EGQRFIYIDYANSQGNLRNVQVVDFDQD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A SG  + D Q  + N  +V      +    I + +   L  +      + L
Sbjct: 181 YRLQALLNADSGQFEQDGQWRLQNSVQVDILEAGNAVQHIAEQQPLALALKPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++       Y  ++ +TY+  F ++L      +   LI+         +R
Sbjct: 241 DPEDLSPSQLISFMRYMEEYS-QVPKTYQLAFWQKLASPFALITLVLIACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L I  G ++   ++ +       +P +     + L  I   +LL   +
Sbjct: 298 QQSMGFRLVIALFIGLGFYYLQDFLGYASLVYSPSPVWFVFFPILLMFIGGSYLLYRAR 356


>gi|333030546|ref|ZP_08458607.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
 gi|332741143|gb|EGJ71625.1| permease YjgP/YjgQ family protein [Bacteroides coprosuis DSM 18011]
          Length = 363

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 136/364 (37%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +   + YI++    +++ +   ++ IA V    +R++   ++    + I+       +P 
Sbjct: 5   LTRIDRYIIKKFLGTYIFAITLVISIAVVFDFTERMDRFMNNNAPWDAIIFDYYFNFVPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + +TG S   L+KP +  A ++++F F+   
Sbjct: 65  FANLFSALFVFIAVIFFTSKLAENSEIIAMLSTGMSFSRLMKPYMISAAIIALFTFVLGG 124

Query: 120 IIEPK---CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
            + PK    R   +    K +   +   ++     ++++ L   I +Y+  N T   + +
Sbjct: 125 YVIPKGSVARVEFEDQYYKKRKKSSARNIQ----LQVEEGLIAYIDRYSDYNKTGYRVIL 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                 +      A+S + D        L D  V     + + IS    K   L  + ++
Sbjct: 181 DKFEGKKLSSHLTARSITYDSTAVNMWTLKDYTVRDFDGLHEYISKGDSKDTVLAMDPSD 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +        L        +      + +  E+HKR+       I  +I   A+ 
Sbjct: 241 FLEFQNQEQMMTNPELRAHIDKQKSRGFGNTKVFEIEYHKRIAMSFAAFILTIIG--ASL 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLL 352
                ++   +H + + L++SF  +  F  I      +    P+  +++     + I   
Sbjct: 299 SSRKAKRGMGLH-LGVGLALSFS-YILFQTISGTFAVSGVVSPMVSMWIPNILYAFIAYY 356

Query: 353 MIKK 356
           + +K
Sbjct: 357 LYRK 360


>gi|331001132|ref|ZP_08324763.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
 gi|329569437|gb|EGG51215.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
          Length = 384

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 95/270 (35%), Gaps = 17/270 (6%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
             +   +  I   I +++ +N  +        +L++  Y     LP +      +     
Sbjct: 16  GGAFTVLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALISLALFLAVFMT 75

Query: 77  LTSMNRNTELLIIDNT-GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           L    R++E+ +  +  G S  + I+PVL  A+ + + +      + P  R+ ++    +
Sbjct: 76  LNRYWRDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDR 135

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
                  S L    F        +   +        ++ + +V+ +   +  +  +  G 
Sbjct: 136 FAQKEDISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELKKDGSRSVLVSDRGH 195

Query: 194 IDLDRQA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSF 249
           I+        I+L+DG  +   P     S+  F+ Y ++ +S+ S      K N   +  
Sbjct: 196 IENKPNGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVGANKKLNAMPIED 255

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
           L+    N             SE   R++  
Sbjct: 256 LIKRTDN----------RAASELFWRISWP 275


>gi|325110017|ref|YP_004271085.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
 gi|324970285|gb|ADY61063.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
          Length = 392

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 135/395 (34%), Gaps = 46/395 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI       F +  + +  I+ ++  +      S +      +++I  Y++ ++
Sbjct: 1   MKLLQRYI---TMELFRVFAMVLTGISVLLVFVGVFQQASENGLGAMEVIQILPYVLYSL 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP+  P    +  T V   M  + EL      G + ++LI P L +  +LS+   +  + 
Sbjct: 58  LPITIPATMLLTVTVVYGRMAGDQELTAARAAGINLLSLIWPSLLMGAMLSVLALLLTDQ 117

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P     I++ +  K +         ++ F   +  L I +     + TL    I  + 
Sbjct: 118 VIPWSIQKIQETVLVKMEKIFLDQLRADHQFVESNQGLAITVIDV-QDKTLIKPTIRYTP 176

Query: 180 DTQTHKIYYAQSGSIDLD-----------RQAIILNDGE--------------VHRKSPI 214
           D        A+S  I  +              I ++DG               +  K P 
Sbjct: 177 DNGQIFTIQAESARIRFNIQERTAWIKIVGGYINMDDGHGAWIREEEYPFPLPMVDKQPK 236

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNP-----------NPNNPNYRPE 263
           ++ +++ +      +  +        +   ++   L                   +   +
Sbjct: 237 ARHMAVKEISEELEEITATRRQQESHRVLARSSHLLTGHFEQLAMSSFVELVQQQHVDNQ 296

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
            ++   +E+H R         F L+    +  +A   +R+ +   F+       +++   
Sbjct: 297 RVDRLSTEYHSRFALAGSCFFFVLVGSPFSIMQA---KRQFLTSFFMVFMPIVFLYYPVV 353

Query: 324 YIIHKIEQNPYYIP--ILYLFLFCISSIFLLMIKK 356
            +     +N    P  ++++       I + ++++
Sbjct: 354 MLAMNQSKNGMVPPESVMWIANVATGVIGIYLLRR 388


>gi|59711022|ref|YP_203798.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59479123|gb|AAW84910.1| conserved inner membrane protein [Vibrio fischeri ES114]
          Length = 358

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 122/320 (38%), Gaps = 8/320 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALCLVTLVGLSSIIKYVEQLRKVGRGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++++   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLSIGVSVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L          + +   ++ +  DD +I +++      L G+ +    D 
Sbjct: 123 APQAQKMARDLRTFEVSGGNIAAVRAGVWAKDADD-FIYLARVENKEKLYGVTVWQFDDN 181

Query: 182 -QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
              + + +A++ +    +    +ND  + +       IS  K  S    T       + +
Sbjct: 182 QDLNNVIFARTATYQAAQDDWKMNDVSITQM-KDKAVISEKKVDSLDWSTTLTPDKLAVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
            +K  +Q+L+ L +   N           Y   F ++  Q +   +  L++   V    R
Sbjct: 241 TVKPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPLR 299

Query: 297 ALVRQRKKIHPIFISLSISF 316
           ++    + +  +    +   
Sbjct: 300 SVTMGARILSGVIAGFTFYI 319


>gi|241760405|ref|ZP_04758500.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
 gi|241319283|gb|EER55761.1| permease YjgP/YjgQ [Neisseria flavescens SK114]
          Length = 356

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 128/362 (35%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNSAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWQRND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A+S  ++ D     L +           ++S    +++ +  +      ++
Sbjct: 179 KNELTQAAEAESAVLNPDGS-WQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K +  ++  L     ++     +  + Y   + ++L   +   +  L++          
Sbjct: 238 VKPDQMSVGELTT-YIDHLEKNNQNTQVYAIAWWRKLVYPVAAWVMALVAFAF--TPQTT 294

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +F  + +     +    F +        P+    L   LF + +++L+  ++
Sbjct: 295 RHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLIRRQE 354

Query: 357 KY 358
           K 
Sbjct: 355 KR 356


>gi|294785396|ref|ZP_06750684.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
 gi|294487110|gb|EFG34472.1| permease, YjgP/YjgQ family [Fusobacterium sp. 3_1_27]
          Length = 363

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 128/366 (34%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYIINLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGIFI-- 175
           I  K  + I      +   +L     +EN  F    D     + K N      + I +  
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEVVK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +++ ++  +I  A+S   D D    I ++  ++           +    Y       + 
Sbjct: 182 FETQISKPKEIITAKSAKFDTDEDKWIFSNVNIYNVDTK----ETVTKTEYKSDLYKDDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +  + +      +         +    E    Y +E  KR +      I   I + A
Sbjct: 238 SNFIRASAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 IYFMNR 360


>gi|255066290|ref|ZP_05318145.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
 gi|255049500|gb|EET44964.1| permease, YjgP/YjgQ family [Neisseria sicca ATCC 29256]
          Length = 356

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 128/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + + A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 IAPVLSQKAENIKSAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWVRND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELRQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           K +  ++  L   ++   NN     +  + Y   + ++L   +   +  L++        
Sbjct: 239 KPDQMSVGELTTYISHLENN----NQNTQIYAIAWWRKLVYPVAAWVMALVAFAF--TPQ 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R       +F  + +     +    F +        P+    L    F + +++L+  
Sbjct: 293 TTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRR 352

Query: 355 KKKY 358
           +++ 
Sbjct: 353 QERR 356


>gi|325198681|gb|ADY94137.1| putative permease, YjgP/YjgQ family [Neisseria meningitidis G2136]
          Length = 356

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 124/372 (33%), Gaps = 28/372 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A     K     T  +L+E        +  I + +  P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNTDIWLKEK-------NSIINVREMLPDHTLLGIKI 173

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D     +   A S  ++ D     L +           ++SI   +++ +  +   
Sbjct: 174 WARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIAAEENWPISVKRNL 232

Query: 235 SSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +++K +  ++  L   +    NN     +    Y   + ++L       +  L++  
Sbjct: 233 MDVLLVKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVYPAAAWVMALVAFA 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R       +F  + +          F +        P+    L    F + +
Sbjct: 289 F--TPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFLAGALPTIAFALLA 346

Query: 349 IFLLMIKKKYTK 360
           +   +I+K+  +
Sbjct: 347 V--WLIRKQEKR 356


>gi|226329629|ref|ZP_03805147.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
 gi|225202815|gb|EEG85169.1| hypothetical protein PROPEN_03539 [Proteus penneri ATCC 35198]
          Length = 343

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 122/337 (36%), Gaps = 24/337 (7%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + I +  ++++ +          N+++ +    IP +  ++ P    +      + +   
Sbjct: 1   MLIFFSQKLVEILGAAVEGNIPTNLVVSLLWLGIPEMAQLILPLSLFLGLLMTYSKLYVE 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
           +E+ +++  G  +  L++  L L++L S     +   + P      +Q+   A+   + +
Sbjct: 61  SEITVMNACGIGKKALVQAALLLSLLTSALAAGNVIWLIPWSSVHQEQVLEDAKANPSLA 120

Query: 144 YLEENLF-FRLDDDLYIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGS---IDLD 197
            L E  F    D ++ + +      N  Q +F+   R    Q   +  A  G    +   
Sbjct: 121 ALMEGQFKMSSDRNMVLYLGSV-KGNQFQDVFLAQLRPTQDQRPSVVVADKGYTKELPNG 179

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
            Q ++L++G  +  + + +D  I  F  Y        S+    +   + +S L + N   
Sbjct: 180 NQIVVLSEGTRYEGTAVLRDFRITDFNDYQAVIGHRESTINRNRVEQKTMSELWHSNETE 239

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                       +EFH RLT     VI  ++ +         RQ +      +S+  +  
Sbjct: 240 S----------IAEFHWRLTLIFSVVIMAVMVVP--LSEVNPRQGR-----VLSMLPAML 282

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++  F  +   +  N     +  L      +   L +
Sbjct: 283 LYLVFFLLQSSLHSNGEKGKVDPLIAMWSVNGVYLAL 319


>gi|256845304|ref|ZP_05550762.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|256718863|gb|EEU32418.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 363

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 127/366 (34%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGEEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQ---GIFI 175
           I  K  + I      +   +L     +EN  F    D     + K N    +     +  
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGKINRETGMAENIEVIK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            ++  ++  +I  A+S   D+D    I ++  ++           +    Y       + 
Sbjct: 182 FETEISKPKEIITAKSAKFDIDENKWIFSNVNIYNVDTK----ETVTKTEYKSDLYKDDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +  + +      +         +    E    Y +E  KR +      I   I + A
Sbjct: 238 SNFIRASAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 IYFMNR 360


>gi|229495721|ref|ZP_04389449.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229317295|gb|EEN83200.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 658

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 2/205 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI++      +M+ +   F+  +  +  R + +        +L+++  +     L
Sbjct: 7   KRMYTYIIQQFMPLLVMTFVICWFVVLMQMLWSRADEIVGRGLDTWVLIQLLFHAAVMAL 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P  TP    + +      +    ELL + + G     ++ P+  + I + + LF+  N  
Sbjct: 67  PTATPLGILLASVMTFGGLGERLELLAMKSAGVPLYRIMSPLFVVGITIGLALFVYLNTA 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD-SR 179
               +    Q+   AQ +     + + +F+       + + K +  N TL  + I D SR
Sbjct: 127 MMDAQVKFFQIIFSAQQSRPDLEIPQGVFYNQIPGYSLFVKKKDHENRTLHELMIYDFSR 186

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN 204
            +   +I  A SG + +D     L 
Sbjct: 187 GSSQPRIVLADSGKLQMDASKTFLT 211



 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 257 NPNYRPE--LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
           +  Y+ E     ++  E H++ T  +  ++F  I +      AL+R+     P+  S+ +
Sbjct: 382 DGAYQAEAYNFRSHSQERHRKFTFPVACIVFFFIGV---PLGALIRKGGIGMPMVASILL 438

Query: 315 SFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIFLLM 353
               +   +   +      +     ++   F +  I   +
Sbjct: 439 FVVYYMIDTLGFNLSYNGTWPTWLGMWFSTFILLPIGAFL 478


>gi|262274978|ref|ZP_06052789.1| putative membrane protein [Grimontia hollisae CIP 101886]
 gi|262221541|gb|EEY72855.1| putative membrane protein [Grimontia hollisae CIP 101886]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 141/357 (39%), Gaps = 5/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +    +V ++ +I+ ++++  V   + ++   ++     +P  +
Sbjct: 3   KILDLYIGRTIIATTSLCLATLVGLSAIIKFVEQLRSVGEGSFTMMTAVQYVLLSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAVLLGALIGLGTLASSSELVVMQAAGFSKLDIGLSVLKTAMPLMLVVLALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   ++L A A+       +   ++ +   D +I I++ +   +L G+ I    DT
Sbjct: 123 APDAQKAARELRAFAKSGGNVMSVRRGVWAKDGSD-FIYIARTDQQESLVGVNIWKFDDT 181

Query: 182 QTHKI-YYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           QT K   +A+     LD+ + +L +  V H   P+  + +  K  ++         S + 
Sbjct: 182 QTLKAQVFAEQARY-LDKDSWMLENVTVTHFDGPVKINETTEKQLAWKTTLTPEKLSIVT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  + +LS + +   +      +    Y     +++ Q L   +  L+++         
Sbjct: 241 VKPEELSLSGVYS-YVDYLKASEQDASRYELALWRKVLQPLSIGVMMLLALSFVFGPLRS 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                     +    +F +       +  +   P ++  +   L  I     L+ +K
Sbjct: 300 VTMGARVLSGVIFGFAFYISNEVFGPMTLVYNLPPFVGAIAPSLAFIGVTLYLLNRK 356


>gi|56708376|ref|YP_170272.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670846|ref|YP_667403.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134302361|ref|YP_001122330.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|224457506|ref|ZP_03665979.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370999|ref|ZP_04987002.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875199|ref|ZP_05247909.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604868|emb|CAG45952.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321179|emb|CAL09335.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134050138|gb|ABO47209.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569240|gb|EDN34894.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841198|gb|EET19634.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159995|gb|ADA79386.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 127/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANSSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|225010828|ref|ZP_03701296.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005036|gb|EEG42990.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 462

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 83/235 (35%), Gaps = 15/235 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI     I   I+ ++     L I+ K   YL+P +   V P    + +     +   +
Sbjct: 1   MFIFIFQSIWLYIDNLAGKGLDLVIIGKFIFYLLPNLTEKVLPLTVLLSSILTFGTFAEH 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   +  +G S    ++ ++ L  +L +  F   + I P        L           
Sbjct: 61  YEFAAMKASGISLQRSMRTLIVLVSVLGLVTFYFADRIIPAAELKSYSLKKNIAKVKPAV 120

Query: 144 YLEENLFFRLDD-DLYIKISKYNPNNT--LQGIFIVDSRDTQTHKIYY-AQSGSIDLDRQ 199
            + E LF   +   + I + +    N   L+ + I    D Q +     A+ G +     
Sbjct: 121 AIAEGLFSEFEGTGMTILVQEKYGENDRYLRDVTIHKKTDNQINTTVIKAKEGELLSSEN 180

Query: 200 A----IILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
           +    ++L DG  +        K+      ++  F++YT+  +    + + +   
Sbjct: 181 SNLIKLVLKDGHYYESLSVTTSKNHQKHPYAVSNFETYTINIDLTELNMVDMDEQ 235


>gi|260434859|ref|ZP_05788829.1| unclassified ABC-type transport system permease [Synechococcus sp.
           WH 8109]
 gi|260412733|gb|EEX06029.1| unclassified ABC-type transport system permease [Synechococcus sp.
           WH 8109]
          Length = 387

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 111/328 (33%), Gaps = 18/328 (5%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + + +  +      + I  ++    IP  L    P    M +  V T ++ N EL  + +
Sbjct: 46  MFELVRQMVDKNLPITIAAQVLFLSIPRWLAFSVPIGTLMASLFVFTRLSANNELTALRS 105

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G +   +I   + L++ +++F F   +++ P+     +    +       +   E++ +
Sbjct: 106 LGITTKRMISAAIALSMAMTLFSFFLNDVVVPRSERYAEVNLKRGLGQAIANKTGEDIIY 165

Query: 152 RLDDDLY-------------IKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
                               +  S    +  ++ + ++D   +   ++  A     + D+
Sbjct: 166 PRFGRRTGIDGKSADRGLLQLFYSWKFQDGEMKDVTVLDFSRSGITQLLRADRAIWNDDQ 225

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS---FLLNPNP 255
                 DG +   +  +   +   FK Y    +SA      ++ +  N++    L     
Sbjct: 226 TGWDFLDGHILTLT-ANGSSTKADFKRYLYPLDSAPQRLAGIEEDAVNMTVAEALQAQRL 284

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
              +   +     R    ++ T  +  ++FGL        +   R  +    +     I+
Sbjct: 285 YEESGSIKEARKIRVRIQEKFTVPMACLVFGLFG-ATLGAQPTYRTSRSFSFVLTLGIIA 343

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFL 343
                GFS+    ++     I   +L +
Sbjct: 344 IYYVIGFSFSSLGVKGTLSPILAAWLPV 371


>gi|169634641|ref|YP_001708377.1| hypothetical protein ABSDF3306 [Acinetobacter baumannii SDF]
 gi|169153433|emb|CAP02575.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
          Length = 356

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 133/363 (36%), Gaps = 19/363 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    +    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFI-YVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ I +VD ++D
Sbjct: 124 VPYTNEKAQSV--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLRDIQVVDFNKD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ G    D Q  +    ++   +  +  ++    +S  L  +      + L
Sbjct: 181 YHLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++       Y  ++ +TY+  F +++      +   L++           
Sbjct: 241 DPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLITLVLVACSFIFGPL--- 296

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI-------EQNPYYIPILYLFLFCISSIFLLM 353
              + H +   L I+  +  GF Y+   +         +P +  ++ + L   +  +LL 
Sbjct: 297 ---RQHSMGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLY 353

Query: 354 IKK 356
             +
Sbjct: 354 RAR 356


>gi|254303141|ref|ZP_04970499.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323333|gb|EDK88583.1| hypothetical protein FNP_0781 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 363

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 130/364 (35%), Gaps = 13/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDMYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITVSIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGIFIVD 177
           I  K  + I      +    L     +EN  F    D     + K N      + I IV 
Sbjct: 122 IYTKSLAKINFYRRGEVDETLKLPTTKENAFFINNTDGYLYLMGKINRETGVAENIEIVK 181

Query: 178 SRDT--QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN- 234
             +   +  +I  A+S   D +    I ++  ++      + ++  ++KS   + + +N 
Sbjct: 182 FENEISKPKEIITAKSAKFDTEENKWIFSNANIYNVD-TKETVTKTEYKSNLYKDDPSNF 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                       +  L        N   E    Y +E  KR +      I   I +    
Sbjct: 241 IRASAEDPRMLTIKELKKTIKEQKNI-GEDTRIYLAELAKRYSFPFASFIVAFIGLSV-- 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL 352
               VR  +    + I +   +G +   S     +  N    P +  ++       I + 
Sbjct: 298 SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIY 356

Query: 353 MIKK 356
            + +
Sbjct: 357 FMNR 360


>gi|285019432|ref|YP_003377143.1| permease [Xanthomonas albilineans GPE PC73]
 gi|283474650|emb|CBA17149.1| putative yjgp/yjgq family permease protein [Xanthomonas
           albilineans]
          Length = 361

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 104/257 (40%), Gaps = 7/257 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR   +SF  + + ++ ++    ++  +  ++       +L    G      
Sbjct: 1   MPKLDRYLLRDFFQSFSATLIVLLVVSVGGVLVDVLGNIADGRIPAKLLFSQLGLQFVVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     L++P+L L + +   + +    
Sbjct: 61  LPLILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRLLRPILMLVVPVVTLVGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T  QL  +A  +L  + LE   F  L D   + +S  + + T L  +F+   +
Sbjct: 121 LGPWADRTSDQLVNEANHSLLMAGLEAGRFTSLPDGSIVYVSTLSGDGTRLSKVFVQRQK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
           D +   +   Q G++  + +A   + L DG       +    D  +M+F +  +     +
Sbjct: 181 DGRLD-VVTGQRGAMFFEGKAERYLRLEDGYRFEGPLAGDGLDYRMMRFANNDVALSERS 239

Query: 235 SSTIVLKANDQNLSFLL 251
           ++           + L+
Sbjct: 240 AARKDDDPALLTTAALI 256


>gi|319637673|ref|ZP_07992439.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
 gi|317400828|gb|EFV81483.1| hypothetical protein HMPREF0604_00062 [Neisseria mucosa C102]
          Length = 356

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 128/362 (35%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWQRND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A+S  ++ D     L +           ++S    +++ +  +      ++
Sbjct: 179 KNELTQAAEAESAVLNPDGS-WQLKNIRRSILGEDKVEVSTAAEENWPISVKRNLMDVLL 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K +  ++  L     ++     +  + Y   + ++L   +   +  L++          
Sbjct: 238 VKPDQMSVGELTT-YIDHLEKNNQNTQVYAIAWWRKLVYPVAAWVMALVAFAF--TPQTT 294

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +F  + +     +    F +        P+    L   LF + +++L+  ++
Sbjct: 295 RHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTVLFALLAVYLIRRQE 354

Query: 357 KY 358
           K 
Sbjct: 355 KR 356


>gi|89256769|ref|YP_514131.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315160|ref|YP_763883.1| hypothetical protein FTH_1434 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010910|ref|ZP_02275841.1| hypothetical protein Ftulh_09393 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254368060|ref|ZP_04984080.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369660|ref|ZP_04985670.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|89144600|emb|CAJ79919.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130059|gb|ABI83246.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253870|gb|EBA52964.1| hypothetical protein FTHG_01381 [Francisella tularensis subsp.
           holarctica 257]
 gi|157122619|gb|EDO66748.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 360

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 127/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HNRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANSSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|114326913|ref|YP_744070.1| permease [Granulibacter bethesdensis CGDNIH1]
 gi|114315087|gb|ABI61147.1| permease [Granulibacter bethesdensis CGDNIH1]
          Length = 404

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 115/351 (32%), Gaps = 25/351 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y++R I R F+     +  +         ++   +       ++++    +   L 
Sbjct: 40  IIQTYLIREIMRPFVPVLAVLAGLFGSFSAAGFLSDAVNGLLPTGSIIQMVSLKVLIALE 99

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +N + E+  +         + + VL L + +++ +        
Sbjct: 100 VLIPISLYLSVLLAFGRLNSDQEITAMAALRVQPERIWRIVLSLCLAMAVVVGALSLFAR 159

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNTLQGIFIVDSRD 180
           P   + +  LS +A ++L    +E   F+       +     +  P     G+F+     
Sbjct: 160 PWAYARLHALSDQAHVSLNTDAMEAGTFYIGPKGNRVIFFTHRQGPEEPASGVFVQ-LWS 218

Query: 181 TQTHKIYYAQSGSID-----LDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESAN 234
               +I  A+            +  I+L+D  ++R +     +  ++      L  +   
Sbjct: 219 PDRMEIISARQAMTLRPASPDAKSQILLSDAHIYRFNRSGEGNDEVLDAAETVLDIQPNK 278

Query: 235 SSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      A       LL +P+P +            +E   R +  +  ++ GL+ I  +
Sbjct: 279 ADAAAYSAVATASRLLLGSPSPAD-----------IAELQWRFSTPVSTLLLGLLGIPMS 327

Query: 294 -DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             K    R  +    I    S         +++ H +      IP ++   
Sbjct: 328 RSKPRQSRYARFGAAILAYFSYYLLCTSARTWVQHGV---VPAIPGIWWVP 375


>gi|167856192|ref|ZP_02478929.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
 gi|167852681|gb|EDS23958.1| hypothetical protein HPS_08251 [Haemophilus parasuis 29755]
          Length = 355

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R I  S +++   +V +  +I+ ++    V   +         +   +P  
Sbjct: 1   MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGRGSYDGLHAAYYTLLTMPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +   +EL+++ + G SR  +   V+  AI L +   I    
Sbjct: 61  IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVLTMIMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +       +  F+  D + +I I +      L  I I    +
Sbjct: 121 GVPQTEQYARNMRS-IAQSGGSMLATQGGFWAKDGNDFIYIRQIQDERNLNNILIYQFDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A+  +     Q  +L   +           +    +++      +      L
Sbjct: 180 QVLKSIKQAEKATY--SEQGWLLQKVDKSEIHESGITQTRETDQTWKTSITPSKLGIASL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + +   F +++ Q +   +  L++I        +R
Sbjct: 238 KPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAISFIFGP--LR 294

Query: 301 QRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I +   F  +     F  +   +   P  I  L   L C+S ++ L+ KK+
Sbjct: 295 SSTMGAKIVIGILTGFVFYVANIVFGNLSLVVSWLPVPIGALIPSLLCLSVVWWLLNKKR 354


>gi|223936058|ref|ZP_03627972.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
 gi|223895280|gb|EEF61727.1| permease YjgP/YjgQ family protein [bacterium Ellin514]
          Length = 372

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 119/378 (31%), Gaps = 28/378 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+LR +           +       ++  I+    +   L  +++     +P+ 
Sbjct: 1   MRLLDRYLLRELLIPLRYCLGGFLIFWISFDLINSIHQFQEAKLHLFDVVQYYLITVPSF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +     L++  R+ E+  I   G S   +  P + + ++ S  +F     
Sbjct: 61  LVIVLPMALLLALLYTLSNHARHHEITAIRAAGISLWRICIPYVAVGLVFSAAVFAINEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEE--NLFF--RLDDDLYIKISKYN-PNNTLQGIFI 175
             P      + +  K +        ++    F      D     I  YN     +    +
Sbjct: 121 WIPDSDQKAQDILDKYKPNRPDGSNKDVYRNFGIPNGRDKRTWDIGSYNLKTEIMTDPKV 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI-------ILNDGEVHRKSPISKDISIMKFKSYTL 228
                        A+      D            + DG +   +  +  ++  +F     
Sbjct: 181 SWIDTNNLPHRLIAERAERTNDVWTFYNVTEFETMPDGFMG-PTMKTNVVAHPEFSETPD 239

Query: 229 QT-----ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
           Q       S   ++   KA +  +  +L+    +P    +      ++ H RL      +
Sbjct: 240 QIRREIKFSKRLTSHNAKAAEVPIVDILDYLDLHPVLTKKNKWWLYTQLHGRLAAPWTCL 299

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----- 338
           +   ++I          +R     +  S+ I F  +      +        Y+P      
Sbjct: 300 VVVFLAIPFGAASG---RRNIFVGVASSIVIVFAYYVLLK--LGLALGTGGYVPAWVAGW 354

Query: 339 LYLFLFCISSIFLLMIKK 356
           L  F+F  + I++L+  +
Sbjct: 355 LPDFVFGAAGIWMLLRVR 372


>gi|332297890|ref|YP_004439812.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
 gi|332180993|gb|AEE16681.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
          Length = 381

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 135/371 (36%), Gaps = 21/371 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY+++ +   F ++ +F   + +V QIL     V      L  +LK+  Y +P ++ 
Sbjct: 16  VLILYLVKELLLYFFIAFVFFFMVFFVNQILLMAEDVLKKRVPLADVLKLISYSLPFIIA 75

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF   +     L  M  + E+LI+   G S   ++ P L L + +SI  F   + + 
Sbjct: 76  QSAPFATLVGFLMCLGRMMSDNEILILRAAGKSFAVILVPALLLGLAISILSFFVNDYLL 135

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P    +  +L     ++     LE N   +  +   + I   +   T+  +   D+    
Sbjct: 136 PLGTISYNKLYRSILMSDPSIELESNS-IKRTESATLVIGDVS-GRTVSDLIFFDTDPQG 193

Query: 183 THKIYYAQSGSIDLDR-----------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           T ++  + +  I   +            A +L   +  +++         +   +T    
Sbjct: 194 TRRVIVSGTADIVNSQNPDVLMQLDMDNARVLFFDKTEKRNYDMMSAEQTRMNVFTSSLF 253

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S+++ T   +    +L  ++             L  Y  E++K+ +     + F L+++ 
Sbjct: 254 SSSAYTNPREMTSYDLRTMIRNMKTQQEKSSLQLNMYELEYYKKFSLPFGSLFFALLAMP 313

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISS- 348
            A      +   +   + I L I    +W    +               ++L   C+ + 
Sbjct: 314 IAIL--FGKHNGQTIGLIIGLFICVA-YWAAMILGQTFGIREGLSGFWTMWLPDLCVGAA 370

Query: 349 --IFLLMIKKK 357
              F L++ ++
Sbjct: 371 GCAFYLVLVRR 381


>gi|182677588|ref|YP_001831734.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633471|gb|ACB94245.1| permease-like protein [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 386

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 122/364 (33%), Gaps = 12/364 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ R I  S LM    +     +  +   +   +     +   L  +   +PTVL
Sbjct: 3   RLLTLYLTRRIALSVLMIEASLCLPLVMTSLFSALPPAAVRGGLIWPALLGT---LPTVL 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +        M     + ++ +   S  ++  P + +A++   F +   + +
Sbjct: 60  YIALPMAVGIAIALEFYRMASEGMIAVLYSLRLSVWSICLPGIVIAMVCVFFGYFVASFV 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVDSRD 180
            P     +  +    + +L    LE   F+  D+    +   ++  ++ + G+FI    D
Sbjct: 120 APNYVGQMHDVVHVIRNSLNHRMLEPAHFYTFDNGSKTLYFQRWRSSDVVSGMFIHQFSD 179

Query: 181 -TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +  +I  A       +     ++L+DG +  +   +  I    F  Y +  +   +  
Sbjct: 180 EKKEEEIITASIAEFRRNENGVMLVLSDGSIESRPEGATAIHTAHFDEYVIPIDMQGTGG 239

Query: 238 IVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  K N + +  +               P     + SE  KR       +   ++++   
Sbjct: 240 MP-KRNWRGVFEVPALEFFRERPQQADDPRRFSEWTSEATKRFAVPFLALSHTILAMGLV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              A    R     +   + +              + Q+P  + ++ L +     +   +
Sbjct: 299 LTLANATGRSTKAGLTAFIVVPLAHILILIGAETLVRQDPRLVWLVGLAIAAELGVGCYL 358

Query: 354 IKKK 357
           + +K
Sbjct: 359 LYRK 362


>gi|303258296|ref|ZP_07344303.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
 gi|302859049|gb|EFL82133.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
          Length = 364

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 17/265 (6%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +  I   I +++ +N  +        +L++  Y     LP +      +     L    
Sbjct: 1   MLFSIVVTIGLVRILNQTAGGRYDTGSILEVVAYTSLINLPALISLALFLAVFMTLNRYW 60

Query: 82  RNTELLIIDNT-GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           R++E+ +  +  G S  + I+PVL  A+ + + +      + P  R+ ++    +     
Sbjct: 61  RDSEMFVWFSAGGLSLTSWIRPVLRFALPVVLVVAACSIAVSPWSRAQVQAYRDRFAQKE 120

Query: 141 TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
             S L    F        +   +        ++ + +V+ +   +  +  +  G I+   
Sbjct: 121 DISKLSSGRFIEAKSGRQVFFLEGVDQEKGKVKTLLMVELKKDGSRSVLVSDRGHIENKP 180

Query: 199 QA---IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-TIVLKANDQNLSFLLNPN 254
                I+L+DG  +   P     S+  F+ Y ++ +S+ S      K N   +  L+   
Sbjct: 181 NGDRYIVLDDGRKYDTKPSGLGASVSDFREYEIRMDSSPSEVGANKKLNAMPIEDLIKRT 240

Query: 255 PNNPNYRPELLETYRSEFHKRLTQW 279
            N             SE   R++  
Sbjct: 241 DN----------RAASELFWRISWP 255


>gi|169797502|ref|YP_001715295.1| hypothetical protein ABAYE3538 [Acinetobacter baumannii AYE]
 gi|184156574|ref|YP_001844913.1| permease [Acinetobacter baumannii ACICU]
 gi|213155684|ref|YP_002317729.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|215484938|ref|YP_002327177.1| hypothetical protein ABBFA_003301 [Acinetobacter baumannii
           AB307-0294]
 gi|239502070|ref|ZP_04661380.1| hypothetical protein AbauAB_07127 [Acinetobacter baumannii AB900]
 gi|260556394|ref|ZP_05828613.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|301346543|ref|ZP_07227284.1| hypothetical protein AbauAB0_09866 [Acinetobacter baumannii AB056]
 gi|301512955|ref|ZP_07238192.1| hypothetical protein AbauAB05_15269 [Acinetobacter baumannii AB058]
 gi|301594833|ref|ZP_07239841.1| hypothetical protein AbauAB059_03452 [Acinetobacter baumannii
           AB059]
 gi|332851502|ref|ZP_08433499.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332866798|ref|ZP_08437202.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332874942|ref|ZP_08442793.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
 gi|169150429|emb|CAM88326.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|183208168|gb|ACC55566.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193076100|gb|ABO10704.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213054844|gb|ACJ39746.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB0057]
 gi|213988459|gb|ACJ58758.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260410449|gb|EEX03748.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii ATCC
           19606]
 gi|322506461|gb|ADX01915.1| permease [Acinetobacter baumannii 1656-2]
 gi|323516340|gb|ADX90721.1| permease [Acinetobacter baumannii TCDC-AB0715]
 gi|332729955|gb|EGJ61286.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013150]
 gi|332734406|gb|EGJ65526.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6013113]
 gi|332736885|gb|EGJ67861.1| permease, YjgP/YjgQ family [Acinetobacter baumannii 6014059]
          Length = 356

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 136/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    +    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQILFTYLGELGELKPDYNAWQAFI-YVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ I +VD ++D
Sbjct: 124 VPYTNEKAQSV--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLRDIQVVDFNKD 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ G    D Q  +    ++   +  +  ++    +S  L  +      + L
Sbjct: 181 YHLQSLINAEQGKFIQDGQWTLQKASQMDILTDGNSILNNHDQQSLGLALQPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++       Y  ++ +TY+  F +++      +   L++         +R
Sbjct: 241 DPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLITLVLVACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L I  G ++   ++ +       +P +  ++ + L   +  +LL   +
Sbjct: 298 QQSMGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLMPIILMFGAGSYLLYRAR 356


>gi|163788154|ref|ZP_02182600.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
           ALC-1]
 gi|159876474|gb|EDP70532.1| hypothetical protein FBALC1_07233 [Flavobacteriales bacterium
           ALC-1]
          Length = 637

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 98/274 (35%), Gaps = 17/274 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  +   I  ++     + +  K   Y +P ++P+V P    + +  V  +   N
Sbjct: 1   MFIFVLQGVWLYIAELAGKDLDVAVTAKFIMYYMPKLIPLVVPLTVLLSSIMVFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ +    + L I  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMRSLSVFIVALGIGCFFFANNVIPWGEYNFYNLRRNIAKKKPAL 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRDT--QTHKIYYAQSGSIDLDRQ 199
            + E  F  +  ++ IK+ + + +N   L+ + I +   T    + +  +++G +     
Sbjct: 121 AIAEGQFNEI-GNINIKVEEKSGDNGQFLKNVIIHEKSKTRGGNYTVIASKNGELKSSPD 179

Query: 200 ----AIILNDGEVHRKSPISKDISIMK-------FKSYTLQTESANSSTIVLKANDQNLS 248
                + L +G  +++                  F  Y +  +    +T  L   +    
Sbjct: 180 SNILQLELTNGNRYQEIINKNRSKNKNLPHTNSYFDKYIINVDLEILNTGDLDEKNHTDR 239

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           + +  +    NY  + L+  R   +K L+  L+ 
Sbjct: 240 YSML-DVEQLNYTIDSLKDKRRNDYKALSNTLYN 272



 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +  +   +L+ N      +  +L  +    H +       +I      V A   AL+R+ 
Sbjct: 315 SSNSTRQILDSNKKTFEKKSIILNKHIIVLHDKFVLAFACIILF---FVGAPLGALIRKG 371

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               P+ I++ + F  ++ F        +   + PIL  +L     +
Sbjct: 372 GLGLPMVIAI-VLFLTYYFFGIFAKNSAEKGSFSPILGSWLSTAIML 417


>gi|187931969|ref|YP_001891954.1| hypothetical protein FTM_1332 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712878|gb|ACD31175.1| conserved hypothetical protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 360

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 126/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  N L  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNILSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANRSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|127511874|ref|YP_001093071.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
 gi|126637169|gb|ABO22812.1| permease YjgP/YjgQ family protein [Shewanella loihica PV-4]
          Length = 352

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 130/350 (37%), Gaps = 15/350 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R +  +  +  L +  ++ +I+ + +I LV   T ++        +LIP  
Sbjct: 1   MRILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQIRLVGRGTYTMVDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR  +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRFQITLSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      K+L A      +       ++ + D DL++ I +    N+L  I + +  D
Sbjct: 121 GAPVAERHGKELQAVKLSGGSLFKSSRGIWAK-DGDLFVNIGEIEDINSLHNIVLYEFDD 179

Query: 181 TQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    A+ G    D   ++  D    + +P    ++ +    +         S + 
Sbjct: 180 KLNLVGTIEARRGVYSKDHWRLL--DVRQTKITPEQVSLTDLTLYRWESTLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L++          +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSIQGLVD-YLEYLRVNNQDSGRYELALWRKIMQPITVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                +  + +   +  GV  GFS+ I      P  + ++Y     + ++
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYICNEIFGP--MTLVYGLPAVLGAV 336


>gi|116330556|ref|YP_800274.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124245|gb|ABJ75516.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 606

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 34/269 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YIL  I   FL++  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGKGVDPLRLLDYFGYLLANTLP 165

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 166 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYLS 225

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDL------YIKISKYNPN-NTLQGIF 174
           P+    + + +           +    F      DL       +     N +   L+G+ 
Sbjct: 226 PENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGVQ 285

Query: 175 IVD-------------------SRDTQTHKIYYAQSGSIDLD-------RQAIILNDGEV 208
           I +                      ++  +I  A  G++           ++I L DG +
Sbjct: 286 IREWEIFLEGNEYFNLGGKMIPMGGSRIIQIINAGKGNLVEKIGPDGEYEKSIRLKDGWI 345

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSST 237
              S   K  S+  F++  +         
Sbjct: 346 LEWSDDRKSFSVTDFRNGEMDYNIPKGKE 374



 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            ++L  +  E H+R+   +  +IF  IS           +        + L I F  F  
Sbjct: 469 KKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTFFTL 528

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            S I +  +   +  P     L  + SI + MIK+
Sbjct: 529 GSTISYNDKVPDWIGPWSANILIALLSINI-MIKR 562


>gi|301059203|ref|ZP_07200141.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446693|gb|EFK10520.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 358

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 118/357 (33%), Gaps = 14/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+   +  ++  L  + +  +I     I+    +    ++++    + IP +
Sbjct: 1   MNVLTRYLLKEFFKLLIVCQLVFIALYLMIDFASGIDDFIKAGAPKSVMIAYFAFKIPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P         + + M RN E++ +  +G +   + +P++ LA  LS+ LF     
Sbjct: 61  AGQMLPPAVLTTVIILFSLMKRNNEVVALKASGVNTWQVAQPLVLLAAFLSVVLFFFSET 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVD 177
           I P   S   +    + +      +  +N  +    +    I +++    +     F   
Sbjct: 121 IVPYASSRCNEIWRIEVKKEHPGRFHGQNHVWYKGKNCIYFIKQFDSRKMMMVDPTFYFF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +  +    +      +   +   +G V  +        + KF    ++ +      
Sbjct: 181 DDKFKIARRIDGRRAIWKENGWQV--QNGIVQNREKDGG-YDLQKFDHLEVKLDENPKDF 237

Query: 238 IVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           I      + + +  L                Y  E + ++      +I  L+ I  A   
Sbjct: 238 IRENVEPEEMGYRQLKRFAQRLKLEGYDANRYFVELNIKIAFPFIVLIMTLMGIPIAL-- 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                 KK     +++SI   + + +  I+       +   +  LF   +++   L 
Sbjct: 296 -----WKKGMGTPVAVSIGIALCFVYLLILGLARTLGFAGILPPLFSAWLANSIFLF 347


>gi|116327644|ref|YP_797364.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116120388|gb|ABJ78431.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 606

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 34/269 (12%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YIL  I   FL++  F   +  V+ + + I L          LL   GYL+   LP
Sbjct: 106 ILNRYILGEILSPFLVALAFFTMVYMVLALQKMIGLFVGKGVDPLRLLDYFGYLLANTLP 165

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    M        ++ ++E+  I + G S   +    L    ++++ +      + 
Sbjct: 166 MTIPMACLMSGIMAAGRLSGDSEITAIRSAGVSFPRIYINFLAFGFVMALVVAYLNFYLS 225

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFF-RLDDDL------YIKISKYNPN-NTLQGIF 174
           P+    + + +           +    F      DL       +     N +   L+G+ 
Sbjct: 226 PENTRKMNEFNKWVLAYNPLLAITPGQFSGDKTQDLFEKRARTMYTDGMNSDTGQLKGVQ 285

Query: 175 IVD-------------------SRDTQTHKIYYAQSGSIDLD-------RQAIILNDGEV 208
           I +                      ++  +I  A  G++           ++I L DG +
Sbjct: 286 IREWEIFLEGNEYFNLGGKMIPMGGSRIIQIINAGKGNLVEKIGPDGEYEKSIRLKDGWI 345

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSST 237
              S   K  S+  F++  +         
Sbjct: 346 LEWSDDRKSFSVTDFRNGEMDYNIPKGKE 374



 Score = 42.3 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            ++L  +  E H+R+   +  +IF  IS           +        + L I F  F  
Sbjct: 469 KKVLTDFNVEIHRRIAMPISCLIFFFISFPLGLVVKRSGKGMSFTLAVVFLMIYFTFFTL 528

Query: 322 FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            S I +  +   +  P     L  + SI + MIK+
Sbjct: 529 GSTISYNDKVPDWIGPWSANILIALLSINI-MIKR 562


>gi|156502931|ref|YP_001428996.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|156253534|gb|ABU62040.1| putative permease, YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 360

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 127/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  + I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNKDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIIICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIHIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HNRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANSSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|325282730|ref|YP_004255271.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314539|gb|ADY25654.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 387

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 123/355 (34%), Gaps = 14/355 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FE Y+L  I    + +   ++ +  +  +   +  + +   S  ++ ++    +P  
Sbjct: 23  MRRFETYVLSEILPLLVAALSALIVLLMLKGLEDVLAPLLAKGASPALVAQLLALNVPEA 82

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L+ ++ ++E+    + G    TL +PVL LA L+++  F    +
Sbjct: 83  MAFGLPLALMFAALLGLSRLSGDSEIKAALSGGIPGTTLFRPVLLLAALVTLLSFGINEV 142

Query: 121 IEPKCRSTIKQLSAKAQLALT-----FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           +  + +   + +  +  L               L  R   D  I +     + TL+ + I
Sbjct: 143 LVTRAKVQAQSVQRQIVLDNPRVIGLAQTAGGGLVLRDALDRAISVGSVGEDGTLRNLRI 202

Query: 176 VDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL---QTE 231
           V  +     + +  A+ G +      + L  G+       ++ ++++ F++  L     +
Sbjct: 203 VTMQPGLPPREVITAREGVLQEGSNVLELRGGQRVSYQ-GARPVTVLNFETGQLPVQDVQ 261

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           ++      L      L  L        +        + +  +++  Q L  +     ++ 
Sbjct: 262 ASFDGGSGLDPFYLPLGTLKERTDGYRDSGIRSPGDFTA-LYRKFAQPLSALALAFFAVS 320

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
            A       +      +  +L +SF  +  +S      E      P+       I
Sbjct: 321 LAL---YTFRSGLNLGLVWALLLSFAYYATWSVFRVMGENGALPAPVAAFGPDVI 372


>gi|254491744|ref|ZP_05104923.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxidans
           DMS010]
 gi|224463222|gb|EEF79492.1| putative permease, YjgP/YjgQ family [Methylophaga thiooxydans
           DMS010]
          Length = 354

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 115/319 (36%), Gaps = 3/319 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + I  S L+  L ++ +   +  +  ++ +      +  +L      +P  
Sbjct: 1   MKILQRYIAKNIIASTLLVLLVLLGLYTFMDFITELDDLGKGNYQILDILSYLALTMPKR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    M +   L ++   +EL+ +   G S   + K VL +A LL +   +   +
Sbjct: 61  IYELLPVAALMGSVIGLGNLASQSELVAMRAAGVSIKDINKAVLIVAGLLVVVALVMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      +Q+ + +Q     S  E   F+  D + +  I + N + +   + I +  D
Sbjct: 121 FRPIAEQKARQMQSVSQTGTVGSRSEYG-FWTRDGNHFNHIERINADGSFSNVAIYEFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +I   Q+ + +  + + IL+D           ++S +    +  Q      + +V+
Sbjct: 180 KHRLRILT-QAVAAEYQQDSWILSDVVQSTIDEKGVEVSSVAHARWKSQLNPGMVNIVVV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 +  LL           + +  Y   F  ++   L   +  L+++          
Sbjct: 239 PPEFLPVWDLLE-YVQYLKRNHQSVAQYELAFWSKMMMPLSTAVMVLLAVPFVFGPLRST 297

Query: 301 QRKKIHPIFISLSISFGVF 319
                      L I F +F
Sbjct: 298 PIGGRVLAGTLLGIGFHLF 316


>gi|294053783|ref|YP_003547441.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293613116|gb|ADE53271.1| permease YjgP/YjgQ family protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 372

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 124/379 (32%), Gaps = 28/379 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L+    +F+++   +V +  +  +   +  + SS  +   +L      +P  
Sbjct: 1   MSLLDRYVLKEWVVAFVLTLGVVVGVLVLQNMYDSLPDLLSSNATGPEILFYYMLSLPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP V P  F +     L +++RN E++ +  TG S   + + +      LS  LF     
Sbjct: 61  LPTVLPITFLVSLLFSLGTLHRNNEVIAMRATGASLFRISRSLWVAGFALSGLLFYLTAE 120

Query: 121 IEPKCRSTIK----QLSAKAQLALTFSYLEE-------NLFFRLDDDLYIKISKYNPNNT 169
           + P      +     LS  A+         E           R +  L+           
Sbjct: 121 VVPMTVERARTFIDNLSYTAKEKKQDVDAREVGLLHNLGFDNRKEGRLWFMNRFSERAWL 180

Query: 170 LQGIFIVDSR-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYT 227
             G+ +     D        A+ G  D  +   +   G   +  P + D I ++ F+   
Sbjct: 181 AIGVNVHTRTADGIEVLRVSAEEGFYDEVKGYWVFLRGRELQIDPDTGDEIRLLSFEEKA 240

Query: 228 LQTESANSS---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
               + +      +  K N+ +L  L       P      +  Y + +   L      ++
Sbjct: 241 YPEYTEDPDLMLAMHKKPNELSLLELREIIETVPAEENPAVHAYTTRYFSLLAAPFSCLV 300

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI-----EQNPYYIPIL 339
              I++  A          + +P+ I +S   G F  F  +I                  
Sbjct: 301 LVGIAVPFAVSGV------RANPM-IGISKCMGYFAVFYVLITISSILGERHMIAPWLAA 353

Query: 340 YLFLFCISSIFLLMIKKKY 358
           +L  F +  + + +  +  
Sbjct: 354 WLPNFAMLVVSMWLYLRAR 372


>gi|319762859|ref|YP_004126796.1| permease yjgp/yjgq family protein [Alicycliphilus denitrificans BC]
 gi|317117420|gb|ADU99908.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans BC]
          Length = 366

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 127/373 (34%), Gaps = 25/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    I R +        L  + + +   ++  +  V S+   ++  L      +P  
Sbjct: 1   MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSNGYRMSHALLFVALSLPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T  V+  + +++E  I+  +G      +  +L L        F   + 
Sbjct: 61  LYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLTLGCAFVALTFAVGDY 120

Query: 121 IEPKCRSTI----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG--IF 174
           + P           Q   +     T ++L+E    + D    + +    P+  ++   +F
Sbjct: 121 LAPISERAAALVRAQQLGQISTGATGAWLKE---RQGDHSFAVNVRALTPDGHMRDVRVF 177

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTL----Q 229
             D+R  +      A   + D    A  L   +        + DI + + +  TL    +
Sbjct: 178 EFDAR-GRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTR 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                 +  +LK +      L +    +     +  + Y  EF +++   L  ++  ++S
Sbjct: 237 ISPDMVAASLLKPDKMATIGLFH-YIRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLS 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PILYLF 342
           +  A      R       +F  +      F     F +  +    +P+       ++Y  
Sbjct: 296 LPFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSL 353

Query: 343 LFCISSIFLLMIK 355
           L   +  +L++ +
Sbjct: 354 LSLAAFGWLVLRR 366


>gi|121594279|ref|YP_986175.1| permease [Acidovorax sp. JS42]
 gi|120606359|gb|ABM42099.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 369

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 132/376 (35%), Gaps = 28/376 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES---LNILLKISGYLI 57
           MK+   +I R +        L  + + +   ++  +  V  +  +   L+  L      +
Sbjct: 1   MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + P    + T  V+  + +++E  I+  +G      +  +L L     +   I 
Sbjct: 61  PQLLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120

Query: 118 ENIIEPKCRSTI----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG- 172
            + I P           +   +     T ++L+E    + D  + + +   +PN  ++G 
Sbjct: 121 GDYIAPASEKAASLVKARRLGQISTGATGAWLKE---RQGDHSIAVNVRAVDPNGAMRGV 177

Query: 173 -IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTL-- 228
            +F  D+R  +      A+  + D  R A  L   +           + + + +  TL  
Sbjct: 178 RVFEFDAR-GRVAATIQAEQATFDDARDAWNLQQVQRTLFEAEADGGMRVSRLQEPTLRW 236

Query: 229 --QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      +  +LK +      L      +     +  + Y  EF +++   L  ++  
Sbjct: 237 PTRISPDMVAASLLKPDKMATIELFR-FVRHLEANGQSAQRYEIEFWRKVFYPLSCLVMV 295

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PIL 339
           ++S+  A      R       +F  +      F     F +  +    +P+       ++
Sbjct: 296 VLSLPFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLI 353

Query: 340 YLFLFCISSIFLLMIK 355
           Y  L   +  +L++ +
Sbjct: 354 YSVLSLAAFGWLVLRR 369


>gi|294139611|ref|YP_003555589.1| hypothetical protein SVI_0840 [Shewanella violacea DSS12]
 gi|293326080|dbj|BAJ00811.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 352

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 131/355 (36%), Gaps = 15/355 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MKILDLYIARTLVSASALCLLILTGLSGIIKWVDQLRVVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     + ++   +EL+++ + G SR  +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGTLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ + D DL++ I +    N L  I + +   
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAK-DGDLFVNIGEVENINRLHNITLYEFDS 179

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T    K  +A+ G    D   +I  D      +     ++ +    +         S + 
Sbjct: 180 TLTLVKTIHAERGVYSNDHWRLI--DVRQTDLTKDKVTLTDLTLYRWDSTLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPESLSIQGLMG-YLDYLKVNNQDSGRYELALWRKIMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  + +   +  GV  GF++ I      P  + ++Y     + ++   +I
Sbjct: 294 -----LRTVTMGARVLLGVIAGFTFYISSEIFGP--LTLVYGLPAFLGAVMPALI 341


>gi|262370180|ref|ZP_06063507.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315219|gb|EEY96259.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 356

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 131/360 (36%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L +   +  +  +   L  +  +          L+   +  P  L
Sbjct: 5   RIVAKHVTKTTAMAMLGATAILSVLQILFTYLGELGSL-KEGYGAWDALRYVLWGAPQYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A++L +  F     +
Sbjct: 64  YEILPIAALIGSVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALILVVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P      K      +   T + L E   ++  +   +I +   N    L+ + +VD  +
Sbjct: 124 IPYTNEQAKG----VKSHRTAAELGEVRGYWTREGQRFIYVDYANSQGQLKNVQVVDFDN 179

Query: 181 TQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               K +  A+ G    D + I+ N  +V      +            L  +      + 
Sbjct: 180 NARLKGVLNAEQGQFVQDGRWILENTAQVDLLPTGNATAQKAAETPLALALQPKYVHMVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +   D + S L++       Y  ++ +TY+  F +++      +   LI+         +
Sbjct: 240 IDPEDLSPSQLVSFMSYMHEYS-QVPKTYQLAFWQKVASPFALIALVLIACSFIFGP--L 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ+     + I+L    G F+   ++ +       +P +   + + L  ++  +LL   +
Sbjct: 297 RQQSMGFRLVIALFTGLGFFYLQDFLGYASLVYSPSPAWFVFVPILLMFVAGGYLLQRAR 356


>gi|330824939|ref|YP_004388242.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
 gi|329310311|gb|AEB84726.1| permease YjgP/YjgQ family protein [Alicycliphilus denitrificans
           K601]
          Length = 366

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 127/373 (34%), Gaps = 25/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    I R +        L  + + +   ++  +  V S+   ++  L      +P  
Sbjct: 1   MKTIRRLIYREVIVGVAFVTLAFLALFFFFDLVDELRWVGSNGYRMSHALLFVALSLPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T  V+  + +++E  I+  +G      +  +L L        F   + 
Sbjct: 61  LYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLALGCAFVALTFAVGDY 120

Query: 121 IEPKCRSTI----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG--IF 174
           + P           Q   +     T ++L+E    + D    + +    P+  ++   +F
Sbjct: 121 LAPISERAAALVRAQQLGQISTGATGAWLKE---RQGDHSFAVNVRALTPDGHMRDVRVF 177

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTL----Q 229
             D+R  +      A   + D    A  L   +        + DI + + +  TL    +
Sbjct: 178 EFDAR-GRVASTTVAAQATFDDSGDAWNLEQVKRSVFEQRPNGDIRVTRRQEPTLLLHTR 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                 +  +LK +      L +    +     +  + Y  EF +++   L  ++  ++S
Sbjct: 237 ISPDMVAASLLKPDKMATIGLFH-YIRHLEANGQSAQRYEIEFWRKVFYPLSCLVMVVLS 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PILYLF 342
           +  A      R       +F  +      F     F +  +    +P+       ++Y  
Sbjct: 296 LPFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLIYSL 353

Query: 343 LFCISSIFLLMIK 355
           L   +  +L++ +
Sbjct: 354 LSLAAFGWLVLRR 366


>gi|260551089|ref|ZP_05825293.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
 gi|260405856|gb|EEW99344.1| permease YjgP/YjgQ family protein [Acinetobacter sp. RUH2624]
          Length = 356

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 134/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    +    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTIVLSVLQVLFTYLGELGELKPDYNAWQAFI-YVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVIGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ I +VD  ++
Sbjct: 124 VPYTNEKAQSI--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLRDIQVVDFDKE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ G    D Q  +    +    +  +  ++    +S  L  +      + L
Sbjct: 181 YHLQSVINAEQGKFIKDGQWSLQKASQTDILTDGNSILNNHDQQSLGLALQPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++       Y  ++ +TY+  F +++      +   L++         +R
Sbjct: 241 DPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLITLVLVACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L I  G ++   ++ +       +P +  ++ + L   +  +LL   +
Sbjct: 298 QQSMGFRLVIALFIGLGFYYLQDFLGYASLVYAPSPAWFVLVPIILMFGAGSYLLYRAR 356


>gi|193212079|ref|YP_001998032.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085556|gb|ACF10832.1| permease YjgP/YjgQ family protein [Chlorobaculum parvum NCIB 8327]
          Length = 383

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 122/348 (35%), Gaps = 13/348 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI+R     F  S      +  +I +++ ++   S    +  ++      +P  
Sbjct: 26  LSIIDRYIIRQFLTIFFFSLASFAALFIIINLIENLDRFMSRQIPVGQIIIYYLSGLPDT 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    + +  V   ++  +EL  +   G S   L+KP L     ++ F  ++   
Sbjct: 86  FLLTSPLSVLLASLFVTGKLSMQSELPALKAAGMSLSRLMKPFLLATFFITAFNLVNSCF 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P      K    +   +      EE +  R   +  + + + N +  +   + +    
Sbjct: 146 ITPAMYDLSKGYEKRYLKSQKEQQ-EEAVHIRESKNRILTVGQINRDRQSAVSVSLETFD 204

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK---FKSYTLQTESANSS 236
            ++      A S  I  + +  +  +    +++ ++   +++      +  L       +
Sbjct: 205 GSRLASRLDADSLRISSNGRHWVFYN--TKQRTFVNGRETLVANPGADTLKLALAKNTFT 262

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I    ++ NL   L             LE    E   ++   L  ++  LI +      
Sbjct: 263 MIDADPDEMNLVQHLAFIAQKKRSGLPGLERAEVELQTKIALPLASMLIVLIGV-----P 317

Query: 297 ALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFL 343
              R+++    +  + S+  G+F+ G    I  +  +    P+L  +L
Sbjct: 318 LSTRKKRSGLALEAATSLLIGLFYLGMLKTIGSLGYDGLINPVLAAWL 365


>gi|170718033|ref|YP_001785073.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
 gi|168826162|gb|ACA31533.1| permease YjgP/YjgQ family protein [Haemophilus somnus 2336]
          Length = 356

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 141/356 (39%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  + L + L +V ++ +I+ +++   +   T  +      +   +P  
Sbjct: 2   MNTLDRYIGKNILGTILATLLMLVGLSAIIKFVEQFRSIGKGTYDVIQATLFTLLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL++I + G SR  +   V+  A+ L +   I    
Sbjct: 62  IETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + AKA    +   ++ +++ +  +D +I + +   + +L  I+I    D
Sbjct: 122 GIPQTEHFARDMRAKAISGGSMLSVKNSIWAKDGND-FIYVGRITNDISLNDIYIYSFDD 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +  K    A   S +  +  +   + +    +   K I+ +K  +++            
Sbjct: 181 KRQLKQVTHANQASFEHGKWKLSGIN-QSQIFADEIKTINRLK-DNWSTTLTPDKLGIAS 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    +++ L N          +  + +   F +++ Q +   +  L+++         
Sbjct: 239 LRPTSLSMTGLYN-YIKFMKETGQDAKRFELTFWQKVFQPVSVAVMMLLALSFIF----- 292

Query: 300 RQRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  +     I  G+F+GF  Y+I++I      +  + + L  +    L MI
Sbjct: 293 ---GSLRSVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMI 345


>gi|317051998|ref|YP_004113114.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
 gi|316947082|gb|ADU66558.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
          Length = 342

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 135/359 (37%), Gaps = 23/359 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + +++ Y+LR     F  +   +  I     +++  +       SL  L +++   +P+ 
Sbjct: 2   LSTWQRYLLRECFFYFFAALASLSLIMASNSLIRMGSSTLEKGISLMSLAQLTLLSLPST 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    +    + +++NR+ E++I+ + G S   ++K +LF + +++     +  +
Sbjct: 62  AFITIPVSALIAAMALSSALNRSNEMVILYSAGISPFGIMKVILFASTVITGIAIANSFV 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     I+ + A     +++  +   +F +L D                 + +     
Sbjct: 122 LAPLASKQIQHVYADMAENVSYRVILPGVFNKLGDTTLFYYHLGREG--FHDVMVA---- 175

Query: 181 TQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            Q   +  A+SGS+    ++  ++L DG +       +  S  +F  + +  E+A  S  
Sbjct: 176 -QGDLVLSARSGSLVQGDESMVLLLRDGTI---VDARQGQSFTRFAVHEIPLETAVDSLR 231

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           +  +   ++  L          R         E HKR    +  ++FG++  +   +   
Sbjct: 232 LSYSM-MSVEQL----------RQLKGSKAILEIHKRYALSVSTLLFGVLGFMLGARGGR 280

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +   +    + +   + +     + +      P  +  +   +    ++F+    ++
Sbjct: 281 SGKGASVLTSLMVVLAFYLIRAIGVHSMDAGLIAPQQVEWIGPGVMAAVTVFVYFRFRR 339


>gi|313674434|ref|YP_004052430.1| permease yjgp/yjgq family protein [Marivirga tractuosa DSM 4126]
 gi|312941132|gb|ADR20322.1| permease YjgP/YjgQ family protein [Marivirga tractuosa DSM 4126]
          Length = 357

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 125/358 (34%), Gaps = 2/358 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L I+ I  VI   ++ +        L  +L   G  IP +
Sbjct: 1   MKILDKYILKKFLSTFVFVVLIILAIVTVIDYTEKNDDFMEHNLGLIDVLPYYGAFIPWI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++TP    +    V + M  +TE++ +  +G S   L+ P +  A L+++  F     
Sbjct: 61  GNLITPITIFIAAVFVTSKMAGHTEIVAMLASGMSFRRLLVPYMIGAGLVALSSFYLNAY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P    T +     A +   F + E ++  ++  + Y  +  YN    +   F +    
Sbjct: 121 VIPDANKT-RIAFETAYIKKPFYFTERDIHLKIAPETYAYMESYNNQRDVGYRFTLELIE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    +   A+    D  +    + D  + +   +++  S  K     L     +     
Sbjct: 180 DKNLKEKLSARRIEWDSAQSNWKVKDWTLRKFDGLTETYSEGKELDTVLNITPKDFGNTY 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L+ L +          + ++ Y  E + R       +I   I ++ + K+   
Sbjct: 240 GLQETLTLTELNDYISLLKERGADNVKIYLIERYIRFMAPFAAIILTFIGVILSSKKKRG 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               +I   F+   I    F     I      NP     L    F I  + L     +
Sbjct: 300 GTGFQIALGFVIAFIFIIFFILSKAIAENSTMNPILAVWLPNITFSIVGLILYKFVPR 357


>gi|293390145|ref|ZP_06634479.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950679|gb|EFE00798.1| conserved permease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 355

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 134/361 (37%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   + L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   ++  ++ +  ++ ++ + +   +  L  I+I   + 
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNN-FVYVRRITDDVELNDIYIYTFNE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  K+ +A   + +  +    L   +  R  P +   +    + +             
Sbjct: 180 QRQLEKLKHANRATFNSGK--WTLQQAKESRIQPENIQTTNRLNEEWQTNLTPDKLGVAS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L N          +  + +   + ++L Q +   +  ++++        +
Sbjct: 238 LRPTSLSISGLSN-YITFLRETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGP--L 294

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +   F  +     F          P    ++   LF I + +LL  ++
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARRR 354

Query: 357 K 357
            
Sbjct: 355 N 355


>gi|95928710|ref|ZP_01311456.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
 gi|95135055|gb|EAT16708.1| permease YjgP/YjgQ [Desulfuromonas acetoxidans DSM 684]
          Length = 360

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 128/368 (34%), Gaps = 21/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +   +S    V I  ++   ++++       + ++ +    + IP +
Sbjct: 1   MTLIQRYLLTTFTKITSLSLAAFVGIYLLVDFFEKVDDFLEHEAAAHLYIAYFAWKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L    +  EL  +   G     ++ P L  A+LL+   F     
Sbjct: 61  VSQMLPLTILLGTFLTLGGFTKTNELTAMRAGGIGLQRIVTPFLVTAVLLTGINFALNEF 120

Query: 121 IEPKCRSTIKQL-SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P        +   + +          +L+FR  + LY           L+GI +    
Sbjct: 121 LVPVGTQRSNHIFRTEVKGKTQMLAKRNDLWFREANTLYHIQLALPEKKQLRGISLYLVD 180

Query: 180 DTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT---LQTESANS 235
                     AQ+ +   D+         V    P S+ ++  K ++     L+    + 
Sbjct: 181 SQLNLLTRIEAQAATFKEDQ--WQAEHVTVRHFDPQSRQLTAQKEENLRLLPLKKTPEDF 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            T+  K  + + + L   +             YR + H RL+     +I   ++I  A  
Sbjct: 239 GTVSGKNEELSFTQLSKISTQM-QREGLDATRYRVDMHSRLSTPFACIIMAFLAIPFAL- 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLF----LFCISS 348
                Q+ +   + + +SIS  +   F  +      +  +    P +  +    +F +  
Sbjct: 297 -----QKSRNVNLSLGISISVLIGISFFIVQSTLIALGYSTVLPPFIAAWAANIIFALVG 351

Query: 349 IFLLMIKK 356
           +FLL+  +
Sbjct: 352 LFLLLSTR 359


>gi|167645643|ref|YP_001683306.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348073|gb|ABZ70808.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 409

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 129/370 (34%), Gaps = 19/370 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + Y+LR +    +      V    + ++L+ ++++S S+     +  ++  L+P  L
Sbjct: 15  RLIDAYLLRLLVWPIVGCLGVTVIALLLERVLRLLDVLSQSSARFGYVTSLAANLVPHYL 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+T ++  +E+  +  +G S   +  P + + + L +F  I    +
Sbjct: 75  GLALPVAFFVALFIVITKLSDGSEIDALLASGQSLTRIAAPFVSVGVFLMVFSLIVFGYM 134

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
           +P  R   + +  +A  A     L    F      L            L+ +FI      
Sbjct: 135 QPYSRYAYRAVMHEAINAGWNGKLNGGSFIDEPKLLMTADDADAAGQQLKRVFIRRLDVN 194

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQT----ESA 233
              ++  A +  +  D  A    ++L +G+             + F   T Q      +A
Sbjct: 195 GNEEVITAATADLRADHDAKSVTMLLRNGQRI-GVDARGAYRTLMFDQLTTQVPLAGAAA 253

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     +  L  L        +  P    T  +E + RL +     +F     + A
Sbjct: 254 LLRARGGDERELTLGELARQANTPNSVVPRA--TLLAELYGRLAR----ALFLPFLPLLA 307

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL----FLFCISSI 349
               L  +R    P  I   +    F     +   + ++   +P+  +     +F   S+
Sbjct: 308 FPLGLAAKRGNRTPGLIIAGVLLLAFQHSLQLGQSLAESGKAMPLAAIGTPWLIFTGLSL 367

Query: 350 FLLMIKKKYT 359
           ++ +  +K  
Sbjct: 368 WMFIGSRKRP 377


>gi|83814343|ref|YP_445251.1| hypothetical protein SRU_1124 [Salinibacter ruber DSM 13855]
 gi|83755737|gb|ABC43850.1| membrane protein, putative [Salinibacter ruber DSM 13855]
          Length = 410

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 121/361 (33%), Gaps = 4/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M +FE +I++ + + F++    ++    V+  ++  +       ++  +        +P 
Sbjct: 50  MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    +  ++ +  +L+ +  +G S   L++P L + +L+++F+F    
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS 178
            + PK    + +   +       S     +  R   +  + +  Y+ +      + +   
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHTVSLQQL 229

Query: 179 R-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
             D +  +   A     D   +   L+D          ++    +     TLQ    + +
Sbjct: 230 AGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLA 289

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +                 L      ++ +       ++  LI +  A  R
Sbjct: 290 RSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIASTR 349

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               Q  +     +   +   V      + +    +P +   L    F + ++ +L   +
Sbjct: 350 RRGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVLWWAR 409

Query: 357 K 357
           K
Sbjct: 410 K 410


>gi|300871686|ref|YP_003786559.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
 gi|300689387|gb|ADK32058.1| permease YjgP/YjgQ family protein [Brachyspira pilosicoli 95/1000]
          Length = 431

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 8/216 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+      F+   LF  FI  +  + +   L+ ++   +   L+I  Y++P  
Sbjct: 1   MKKIKKYIILEAIGPFIAGVLFFTFIFVIQLLPELFKLILNNGAPIWTSLEIFVYMLPFN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    M        ++ + E++++   G S + +  P++ L     +F     N+
Sbjct: 61  VAITIPMSILMAGIMGYGRLSSDNEIIVMRALGFSHMRIYAPIIILGFFTFLFSLFFNNV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSR 179
           +  +     + L +          + +  F  + D +L I    Y+ NN +  + I D  
Sbjct: 121 VMTESNYRYRALFSYIINIRPSIAVGKLEFAYISDINLSIGA-YYSDNNGMSNVVIYDG- 178

Query: 180 DTQTHKIYYAQSGSIDLDRQ-----AIILNDGEVHR 210
           ++Q  +I  A+SG    +        + L DG V  
Sbjct: 179 NSQARRIITAKSGKWKNNEANSKVITLTLYDGIVQE 214


>gi|124023382|ref|YP_001017689.1| permease [Prochlorococcus marinus str. MIT 9303]
 gi|123963668|gb|ABM78424.1| possible permease [Prochlorococcus marinus str. MIT 9303]
          Length = 403

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 124/371 (33%), Gaps = 21/371 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      +   V  +   +  +      L+  L++    +P  L
Sbjct: 32  LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++ N+E   + + G S   ++ P L LA+L++   FI  ++I
Sbjct: 92  VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYNPN 167
            P+  S+ +    +A      +   +++ +     +                   ++   
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGTKAEDRNQGLSQLFYAREFLK- 210

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++ + ++D       ++  A+    +         +G +   +P     S ++F  Y 
Sbjct: 211 GEMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPSGSTTS-VEFDRYL 269

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVI 284
               S       L  +  N++        +        +     +    ++ T  +  ++
Sbjct: 270 YPLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLV 329

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI   +   +   R  +        L I       FS+    +      +   ++ +F
Sbjct: 330 FGLIG-SSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAWVPVF 388

Query: 345 CISSIFLLMIK 355
              +   L+++
Sbjct: 389 ISLAGGGLLLR 399


>gi|113460663|ref|YP_718729.1| permease [Haemophilus somnus 129PT]
 gi|112822706|gb|ABI24795.1| conserved permease [Haemophilus somnus 129PT]
          Length = 356

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 140/356 (39%), Gaps = 14/356 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  + L + L +V ++ +I+ +++   +   T  +      +   +P  
Sbjct: 2   MNTLDRYIGKNILGAILATLLMLVGLSAIIKFVEQFRSIGKGTYDVIQATLFTLLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL++I + G SR  +   V+  A+ L +   I    
Sbjct: 62  IETFFPMAALLGSLIALGNLASRSELIVIQSAGFSRFRIGLAVMKTALPLMLITMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + AKA    +   ++ +++ R  +D +I + +   +  L  I+I    D
Sbjct: 122 GIPQTEHFARDMRAKAISGGSMLSVKNSIWARDSND-FIYVGRITNDIRLNDIYIYSFDD 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +  K    A   S +  +  +   + +    +   K I+ +K  +++            
Sbjct: 181 KRQLKQVTHANQASFEHGKWKLSGIN-QSQIFADEIKTINRLK-DNWSTTLTPDKLGIAS 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    +++ L N          +  + +   F +++ Q +   +  ++++         
Sbjct: 239 LRPTSLSMTGLYN-YIKFMKETGQDAKRFELTFWQKVFQPVSVAVMMMLALSFIF----- 292

Query: 300 RQRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  +     I  G+F+GF  Y+I++I      +  + + L  +    L MI
Sbjct: 293 ---GSLRSVTAGARIVTGIFFGFLFYVINEILGRLSLLYDIPIVLAALIPSLLFMI 345


>gi|89891008|ref|ZP_01202516.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
 gi|89516652|gb|EAS19311.1| putative permease, YjgP/YjgQ family [Flavobacteria bacterium BBFL7]
          Length = 357

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 136/368 (36%), Gaps = 23/368 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YILR    +FL+     + I   + I ++I  + S       ++          
Sbjct: 2   LKILDRYILRQYLGAFLLLLCLFIPIMITVHIAEKIGKILSKDIPFTEVMMYLLDFTIYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T    + +  NTE++   ++G S    ++P +  A+L+ +   +   +
Sbjct: 62  SNFLFPIFLFISTMFFTSKLANNTEIVAFLSSGVSYNRFLRPYIIGAVLVCVTALVFSTV 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
             P   +   +   K   +        N+F R+ DD Y+ +S YN    T     +    
Sbjct: 122 FVPDAAAGFNEFQFKYFKSEKERQ-TNNVFRRISDDDYVYVSNYNSGRKTGYDFTLEHFN 180

Query: 180 DTQTHKIYYAQSGSIDLD-------RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
             +     YA+  +           ++ ++  +GE+   +  +K  +I+ F    L   S
Sbjct: 181 GNELEYKIYAERIAFKDSVYTLSRYKKRVLQENGEI--LTTKAKLDTILNFDIDELTPSS 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             + T+  +        LL+      +     +  Y  E HKR +  +  +IF +I++  
Sbjct: 239 YVAETLSYQK-------LLDFIETEESRGNGNMNVYYVEKHKRTSIPVSALIFTIIAVAV 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIF 350
               ++ ++      + I L I+    +         E++  + P   ++        + 
Sbjct: 292 ---SSVKKRGGMGVNLAIGLGIAMSYMFLDKVFGTIAEKSTSFEPWIAVWAPNIFFGIVA 348

Query: 351 LLMIKKKY 358
           LL+I+   
Sbjct: 349 LLLIRNAR 356


>gi|126175308|ref|YP_001051457.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|153001630|ref|YP_001367311.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217972441|ref|YP_002357192.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
 gi|125998513|gb|ABN62588.1| permease YjgP/YjgQ family protein [Shewanella baltica OS155]
 gi|151366248|gb|ABS09248.1| permease YjgP/YjgQ family protein [Shewanella baltica OS185]
 gi|217497576|gb|ACK45769.1| permease YjgP/YjgQ family protein [Shewanella baltica OS223]
          Length = 352

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    N L  I +   + 
Sbjct: 121 GAPIAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVENINKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A       DR    L D +    S     +  ++   +         S + 
Sbjct: 180 ELKLTNVVHADRAVFSQDR--WRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 IKPEALSIRGLVG-YLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|294507117|ref|YP_003571175.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
 gi|294343446|emb|CBH24224.1| conserved hypothetical protein, membrane [Salinibacter ruber M8]
          Length = 410

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 121/361 (33%), Gaps = 4/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M +FE +I++ + + F++    ++    V+  ++  +       ++  +        +P 
Sbjct: 50  MSTFERHIIKRLLKGFVLFVGALLVFFIVLHWVEYSDDFLDGGATIWEVFTVFYPNYVPE 109

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ + +P    +    +  ++ +  +L+ +  +G S   L++P L + +L+++F+F    
Sbjct: 110 IIRLTSPLALFLSCIYLTGTLAQELQLVALQTSGVSLYQLMRPYLGVGLLVTVFMFGFNG 169

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS 178
            + PK    + +   +       S     +  R   +  + +  Y+ +      + +   
Sbjct: 170 WVVPKTNEVVVRYENEYLPGNQKSVQTSEIHRRNGPNSILSVGYYDADRERAHTVSLQQL 229

Query: 179 R-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
             D +  +   A     D   +   L+D          ++    +     TLQ    + +
Sbjct: 230 AGDARLARRVDANRMEWDDSLEVWRLDDVTRRTFVKGETQRKRTIASLDTTLQVYPRDLA 289

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                     +                 L      ++ +       ++  LI +  A  R
Sbjct: 290 RSKNDVAAMTIPAAAEYLAALRRSGVGGLTRPLVAYYNKFAYPFANLLLVLIGVPIASTR 349

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               Q  +     +   +   V      + +    +P +   L    F + ++ +L   +
Sbjct: 350 RRGGQAVRFAIGLLIAFVYLSVQKLAEPLGYAGTLSPAWTAWLPHLTFAVVALLVLWWAR 409

Query: 357 K 357
           K
Sbjct: 410 K 410


>gi|323163036|gb|EFZ48869.1| hypothetical protein ECE128010_0632 [Escherichia coli E128010]
          Length = 150

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 68/150 (45%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSSQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M+ P    +     L  M  ++E+  I   G S   L K VL+LAI LSIF+ +    
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
             P   + I QL  ++Q  L    L    F
Sbjct: 121 GRPWAYAQIYQLEQQSQSELDVRQLRAKKF 150


>gi|78188283|ref|YP_378621.1| hypothetical protein Cag_0302 [Chlorobium chlorochromatii CaD3]
 gi|78170482|gb|ABB27578.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 119/344 (34%), Gaps = 5/344 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI +   ++FL + L  V +  +I +++++        S   + +     IP++
Sbjct: 1   MKILERYIFQQFIKAFLFTALVFVSLFIIINMIEKLGNFMDHHVSALEIARYYLLSIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    + +  V   +    EL  I + G S   L+ P  + A+LL +F F +   
Sbjct: 61  FLVTSPVSALLASILVAGKLATQNELPAIRSAGVSMRQLLTPFAWGALLLFLFNFFNAGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P   S  +                 NL      + +I I  +NP N +L  + I    
Sbjct: 121 LAPTTYSHNRTFEQLYLGKNAGDQETRNLHLLDSGNRFISIGAFNPINESLNNVSIERLS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    A S   +   +   +        S   +  +     +  L         + 
Sbjct: 181 GATMISRIDADSMHYNRRTKRWTMWRVTERYFSNGYQSFTTKPTATIRLALRPKALHEMR 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ ++  L                 LE    +FH ++      +I  LI +  A ++   
Sbjct: 241 LQPDEITLPRHYQFLREKEEAGFSGLERSAVKFHNKIAMPFASLIITLIGVPLAARK--- 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           ++      I I+L I F ++ G    I          PI+  +L
Sbjct: 298 KRGGIAAEIAITLFIGF-LYLGIQRTIAIAGYQGVLPPIVAAWL 340


>gi|319941841|ref|ZP_08016163.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804774|gb|EFW01641.1| hypothetical protein HMPREF9464_01382 [Sutterella wadsworthensis
           3_1_45B]
          Length = 377

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/382 (12%), Positives = 129/382 (33%), Gaps = 30/382 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M        + I  S +   + ++ +     ++ +++ + +        L  +   +P+ 
Sbjct: 1   MSVISRQFAKDILLSTIFVLIVLIALFAFFDLIGQLDDLGADYTIGRAFLT-TSLTLPSR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + +   ++     +E  ++  +G S   L + +L   ++  +  +    I
Sbjct: 60  AYEVMPLAVLLASVYTMSKWASTSEFTVLRASGCSPWRLARSLLIPGVICVLATYGLGEI 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDD---LYIKISKYNP-NNTLQ 171
           + P  +   +++ +    +L+        +        +D     YI +   +  +  L 
Sbjct: 120 VAPAAQRFAQEVRSGTNASLSIRGFASGAWVRDVINSPEDGRVERYINVRNLSASDRQLT 179

Query: 172 G---IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK--------SPISKDISI 220
           G   +F  +  D +  ++  A+SG          L +  +           +P    ++ 
Sbjct: 180 GAWRMFEFNRDDGRLLRLVRAESGR--WTGTGWELTNAVIIHYPAVTATKDAPQQGSVTT 237

Query: 221 MKFKSYTL-QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
               +  L  T + +  +++    D+     LN    + +   +  E Y S F  +    
Sbjct: 238 EHVDALKLTSTVNPDILSVMTTKPDRMSMDELNRFIEHLDQVHQDTEHYVSVFWSKAFYP 297

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI 336
              ++   +++  A      R       IF  + +    +     F Y+       P  +
Sbjct: 298 FICLVMLAVAMPFA--YMNARSGGMAVKIFCGVLVGIAFYALNNIFLYLSVLSSMPPALM 355

Query: 337 PILYLFLFC-ISSIFLLMIKKK 357
             L   L C  +++ L  ++++
Sbjct: 356 AALPSILMCFAAALSLWWLERR 377


>gi|226357374|ref|YP_002787114.1| membrane protein; permease [Deinococcus deserti VCD115]
 gi|226319364|gb|ACO47360.1| putative membrane protein; putative permease [Deinococcus deserti
           VCD115]
          Length = 368

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 118/332 (35%), Gaps = 17/332 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  + + I  + +      ++ ++    +P  
Sbjct: 1   MKRFERYVLAEILPLLVGALASVIVLFVLAALQEVIAPLLAKGARPLLVARVLALNVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P      T   L+ ++ ++EL     +G     L +PVL L + +++  F+    
Sbjct: 61  AARALPIALMFATLLGLSRLSSDSELKAALASGIPARRLYRPVLLLGLGVTVLAFLIGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSY----LEEN---LFFRLDDDLYIKISKYNPNNTLQGI 173
           + P+ +   +++  +              E     L  R      I + +      L+ +
Sbjct: 121 LLPRTKIEERKVKQEIVFDNPRVIGLGAQEPGGQSLVLRDALGRAISVGEVRAGGELRDL 180

Query: 174 FIVDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            IV  +     + +  A+ G +      + L  G+          ++I+ F+  TL  + 
Sbjct: 181 RIVTMQGGSVPREVITAREGRLKSGSNVLELQGGQRVTYQDGRP-VTILSFERGTLPVQD 239

Query: 233 ANSS----TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
             +        LKAN   L  LL    +      +    + +  H++  + L  +     
Sbjct: 240 VQADLDTGGKALKANYLPLRELLARTNSYRQQHIQAPAEFTA-LHQKFAEPLAALALAFF 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
           ++  A       Q  +   +  +L ++F  + 
Sbjct: 299 AVSLA---VFTFQSGRDLGLVWALLLAFAYYA 327


>gi|225075101|ref|ZP_03718300.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
           NRL30031/H210]
 gi|224953585|gb|EEG34794.1| hypothetical protein NEIFLAOT_00100 [Neisseria flavescens
           NRL30031/H210]
          Length = 356

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 128/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MDLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGTTMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   ++  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKILLILSQFGLIFAIATATLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      + + A A      +     L+ + + +  I + +  P++TL GI I    D
Sbjct: 121 IAPVLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                       ++  +  +  L +      S    ++S    +++ +  +      +++
Sbjct: 179 KNELTQATEAESAVLNNDGSWQLKNIRRSTLSEDKVEVSTAAEENWPIAVKRNLMDVLLV 238

Query: 241 KANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           K +  ++  L   ++   NN     +  + Y   + ++L   +   +  L++        
Sbjct: 239 KPDQMSVGELTTYISHLENN----NQNTQIYAIAWWRKLVYPVAAWVMALVAFAF--TPQ 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R       +F  + +     +    F +        P+    L   LF + +++L+  
Sbjct: 293 TTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVLPFLAGALPTVLFALLAVYLIRC 352

Query: 355 KKKY 358
           ++K 
Sbjct: 353 QEKR 356


>gi|188993099|ref|YP_001905109.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734859|emb|CAP53070.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris]
          Length = 360

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 138/370 (37%), Gaps = 25/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L+L + + + +      
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + ++  +P+   L  +F+   +
Sbjct: 121 LGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQRQK 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D +   +  A+ G++       + + L DG        ++  D  +M F S  +      
Sbjct: 181 DDRID-VVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLDYRLMTFASNDVALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +         +   L+           +     R+E H+RL   L         +    
Sbjct: 240 KAHDANDPEVMSTFKLI----------GDARPIARAELHRRLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFG---VFWGFSYIIHKIEQNPYYIPILYL-FLFCISSIF 350
            R+  RQ++    +   L+   G   +  G  +I +   + P  + + +L       SI+
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYLVGTNLMIVGTQWIAN--GKVPGAVGLWWLTLPLLAVSIW 345

Query: 351 LLMIKKKYTK 360
                 + ++
Sbjct: 346 AYARDGRLSR 355


>gi|224825294|ref|ZP_03698399.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
 gi|224602215|gb|EEG08393.1| permease YjgP/YjgQ family protein [Lutiella nitroferrum 2002]
          Length = 358

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 130/360 (36%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +  + L +   ++ +     I++ +  +   +  +  +L     L+P  
Sbjct: 1   MKLIYRYITTQLTVATLYALAALLALYAFFDIIKEVPDLGHGSYGVPQMLLYIALLMPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     +T +  ++E  II  +G +   +   +L   I  ++   +    
Sbjct: 61  AYELMPLVVLIGGMVAMTQLATSSEYTIIRTSGVTLAQVAGVLLRFGIGFAVITGLLGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P      +++   A  ++        ++ + D + +I + +  P+NTL G+ I    +
Sbjct: 121 GAPFSEKQAERMKLSATKSMVTQEFHSGIWVKDDQN-FINVGEMLPDNTLLGVRIYTYDK 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +  +  +A+ G+    +    L   +       +     +    +       +   ++
Sbjct: 180 DYRLVQTRFAERGTYQRPQHVWRLEKVKETTLGDKATTTRQLNTLDWH-SVIEPSILDVL 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L   +Q  +  L     +     +  + Y      +    L  +   L+++    ++   
Sbjct: 239 LVVPEQMSAMDLTTYIEHLRSNEQKTQRYEIALWSKFFYPLACISMALVALAFTPRQRRH 298

Query: 300 RQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            Q      + I L ++F  V   F+++    + N  +   L   LF ++ I + + +++ 
Sbjct: 299 AQLGIRLFVGICLGVAFHFVNRLFAHLGLLYDWNAMFAATLPTLLFLLAGITITVRQERR 358


>gi|33862844|ref|NP_894404.1| putative permease [Prochlorococcus marinus str. MIT 9313]
 gi|33634760|emb|CAE20746.1| possible permease [Prochlorococcus marinus str. MIT 9313]
          Length = 403

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 124/371 (33%), Gaps = 21/371 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             + ++L  +    L +      +   V  +   +  +      L+  L++    +P  L
Sbjct: 32  LLDRWLLGELIPVLLFAIAAFTVVSVSVGVMFDLVRKIVEFGLPLHFALQVFSLKLPFFL 91

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T    + ++ N+E   + + G S   ++ P L LA+L++   FI  ++I
Sbjct: 92  VISFPMATLLATLLAYSRLSSNSEFTALRSLGVSTRRIVAPALALALLMTGLTFIFNDVI 151

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY--------------IKISKYNPN 167
            P+  S+ +    +A      +   +++ +     +                   ++   
Sbjct: 152 VPRTNSSAEVTIKRALGKAIATEKGKHVVYSRFGTITGAEAEDWNQGLSQLFYAREFLK- 210

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
             ++ + ++D       ++  A+    +         +G +   +P     S ++F  Y 
Sbjct: 211 GEMEDVTVLDLSRLGFTQMLKAERAIWNEQEAMWEFFNGNILTLTPRGSTTS-VEFDRYL 269

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVI 284
               S       L  +  N++        +        +     +    ++ T  +  ++
Sbjct: 270 YPLTSGPIRVAKLPKDANNMTVAQAMEAASIYTDAGNRKEARRLKVRIQEKFTFPMSCLV 329

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           FGLI   +   +   R  +        L I       FS+    +      +   ++ +F
Sbjct: 330 FGLIG-SSLGAKPNSRTSRTQGFGISLLLILAYYTLSFSFSSLGVTGTLTPMLAAWIPVF 388

Query: 345 CISSIFLLMIK 355
              +   L+++
Sbjct: 389 ISLAGGGLLLR 399


>gi|329964131|ref|ZP_08301297.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
 gi|328525651|gb|EGF52680.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
          Length = 633

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      + +L +   Y   ++
Sbjct: 4   IKKLDIFILKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    +       +     ELL +   G S + +++P++     + +  F  +N+
Sbjct: 64  VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICLVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   D   + +   +     L  + I +  
Sbjct: 124 IGPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKDRKTGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
              +  +I  A SG ++   D+Q + L+
Sbjct: 184 KGFENAQIIKADSGRLEMTADKQHLYLH 211


>gi|222110916|ref|YP_002553180.1| permease yjgp/yjgq family protein [Acidovorax ebreus TPSY]
 gi|221730360|gb|ACM33180.1| permease YjgP/YjgQ family protein [Acidovorax ebreus TPSY]
          Length = 369

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 131/376 (34%), Gaps = 28/376 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES---LNILLKISGYLI 57
           MK+   +I R +        L  + + +   ++  +  V  +  +   L+  L      +
Sbjct: 1   MKTIRRFIYREVVVGVAFVTLAFLALFFFFDMVDELRWVGRAGANGYQLSHALLFVALSL 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  L  + P    + T  V+  + +++E  I+  +G      +  +L L     +   I 
Sbjct: 61  PQHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGLGPWRALSTLLMLGCAFVMVTVIV 120

Query: 118 ENIIEPKCRSTI----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG- 172
            + I P           +   +     T ++L+E    + D  + + +   +PN  ++G 
Sbjct: 121 GDYIAPASEKAASLVKARRLGQISTGATGAWLKE---RQGDHSIAVNVRAVDPNGAMRGV 177

Query: 173 -IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTL-- 228
            +F  D+R  +      A+  + D  R A  L   E           + + + +  TL  
Sbjct: 178 RVFEFDAR-GRVAATIQAEQATFDDARDAWNLQQVERTLFEAEADGGMRVSRLQEPTLRW 236

Query: 229 --QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +      +  +LK +      L      +     +  + Y  EF +++   L  ++  
Sbjct: 237 PTRISPDMVAASLLKPDKMATIELFR-FVRHLEANGQSAQRYEIEFWRKVFYPLSCLVMV 295

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PIL 339
           ++S+  A      R       +F  +      F     F +  +    +P+       ++
Sbjct: 296 VLSLPFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGFAGNLQNWSPWLTAAAPGLI 353

Query: 340 YLFLFCISSIFLLMIK 355
           Y  L   +  +L++ +
Sbjct: 354 YSVLSLAAFGWLVLRR 369


>gi|329118129|ref|ZP_08246841.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465789|gb|EGF12062.1| YjgP/YjgQ family permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 356

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 127/361 (35%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+   Y++R +    L +   ++ +     I+     +     +   + +     IP  
Sbjct: 1   MKTIPRYLIRQLSVMSLYAMFALLALYSFFDIVAEAGGIGEGGYTAGKMAQYVFLQIPDH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +   L+ +  N+EL +I  +G S   L+   L   ++ +    +   +
Sbjct: 61  AYQLMPLAVLIGSLLALSRLAANSELTVIKTSGMSTANLLTVFLIFGLIFATATALLGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P      + L   A+     +   E L+ + + +  + + +  P+ TL+GI      D
Sbjct: 121 AAPAANRYAENLKTTAKNGKISTG-AEGLWIK-EQNSIVNVREMLPDQTLRGIKAFRHND 178

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ--TESANSST 237
             Q  + + A + ++  D     L +  V R     + +   + +    Q    S     
Sbjct: 179 AFQLIESWQADAATVAPDGT-WRLEN--VRRSILGGERVRTERHERENWQAGIRSGLLDV 235

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +++  +  +L+ L      +     +  + YR E+ ++L      V+   ++        
Sbjct: 236 LLVSPDQMSLAAL-TAYIAHLEENRQKTDLYRIEWWRKLMYPAATVVMAFVAFAF--TPQ 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             R       +F  + +     +    F +        P+   +L   LF   +++L+  
Sbjct: 293 SARHGNMGLKLFGGICLGLAFHFAGRLFGFTSRLYGIPPFLAAVLPTLLFAAWAVWLIRR 352

Query: 355 K 355
            
Sbjct: 353 H 353


>gi|261867782|ref|YP_003255704.1| permease [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413114|gb|ACX82485.1| conserved permease [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 355

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 133/361 (36%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   + L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGFAVMKTTLPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   ++  ++ +  ++ ++ + +   +  L  I+I   + 
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNN-FVYVRRITDDVELNDIYIYTFNE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  K+ +A   + +  +    L      R  P +   +    + +             
Sbjct: 180 QRQLEKLKHANRATFNSGK--WTLQQVNESRIQPENIQTTNRLNEEWQTNLTPDKLGVAS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L N          +  + +   + ++L Q +   +  ++++        +
Sbjct: 238 LRPTSLSISGLSN-YITFLRETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGP--L 294

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +   F  +     F          P    ++   LF I + +LL  ++
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLIITWWLLARRR 354

Query: 357 K 357
            
Sbjct: 355 N 355


>gi|289803331|ref|ZP_06533960.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 258

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 94/253 (37%), Gaps = 5/253 (1%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKI 186
             ++ A+A+     + L +  F +  +   +   +    +    +F+   R        +
Sbjct: 121 QDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSV 180

Query: 187 YYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
             A SG    +    Q + LN G     + + +D  I  F++Y         +      +
Sbjct: 181 VVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTD 240

Query: 244 DQNLSFLLNPNPN 256
             ++  L N + +
Sbjct: 241 QMDMRTLWNTDND 253


>gi|262038164|ref|ZP_06011561.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
 gi|261747812|gb|EEY35254.1| permease, YjgP/YjgQ family [Leptotrichia goodfellowii F0264]
          Length = 358

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 128/364 (35%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF +  +    I  + + +     +     +L   +K   Y IP +
Sbjct: 1   MNKLDKYIILNYIKSFFLGMMMFFLIFILAESINLTGWIMDGKFTLGEAVKYLSYGIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +   G S + + K  L  +  +S+ +      
Sbjct: 61  VTNTAPLGILLGSLLAISKMAKQLEITAMKTGGISFLRIAKFPLIFSFFVSLSVLYVNVD 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF--RLDDDLYIKISKYN-PNNTLQGIFIVD 177
           I  K  S  K      +L        E  F   ++D +  +     N  +  ++ + I++
Sbjct: 121 ILGKSNSK-KSNMKLLKLEQAEPVKVEKNFILVKIDKNRILYSGYVNKKDGIMREVEIIE 179

Query: 178 SRD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
             D       +Y A  G+++         + + H   + +SK+I    FK   L+    +
Sbjct: 180 MADEFKNVKTVYTASEGALEKGTDNWTFTNLKEHNIMTNVSKNIDPGVFK---LKIPIDD 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                +KA +  +  L            + ++    +F+ R++  L   +   I +    
Sbjct: 237 ILADPVKAKNLTMPELREKIVYFTRVGADSIDLLI-DFYYRISFALASFVMCFIGLSLG- 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-----ILYLFLFCISSI 349
                R  +    + I LS+  G  +     I K   +   IP      L L ++    I
Sbjct: 295 ----SRYVRGGAAVNIGLSVIIGYSYYGFSTIMKSLASTGTIPVYIACFLPLLIYLGVGI 350

Query: 350 FLLM 353
            L M
Sbjct: 351 KLFM 354


>gi|87121691|ref|ZP_01077578.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
 gi|86162942|gb|EAQ64220.1| permease YjgP/YjgQ [Marinomonas sp. MED121]
          Length = 353

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 133/362 (36%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +  +F      ++ + +V+  ++++  +S    +++ LL++    +P+ 
Sbjct: 1   MKQLDSYIGKGVVWAFFAVVFILLGLDYVLTFIEQVKRISEF-YTISNLLEVLLLRLPSK 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L ++   +EL +I   G     +    +   +++S+        
Sbjct: 60  FAEYIPIASLIGTLVGLGALASTSELTVIRAAGIPIWRIGWSAIKPILIISLIGVGISEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +    +   + + +   ++ R ++  YI I   +   TL  + + +S++
Sbjct: 120 IAPNADQRANLIENLKKQQTSDNIISGGVWIRSEEK-YIFIGAADQKGTLYNVKVFNSKN 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A++       +   LN     +      + +   F+S T+  +  +      
Sbjct: 179 QTLQSTQIAKTAQYKTADE-WTLNQVTNTQFLADKIESNNTNFESLTMTFKPEHLYLATQ 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI--VAADKRAL 298
           +    +LS  ++   N    +      Y  EF  +  + +  +   LI++  V    R+ 
Sbjct: 238 EPEALSLSQSIS-YQNYLEGQDLNTSRYELEFWTKALRPVASIALVLIALSSVFGPLRSS 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
               +    + I +     +F     +  ++     + P+L + +     + +  ++ K 
Sbjct: 297 TMGSRIFSGVMIGI-----IFQNGLNLFGRMSLAADFSPLLGVLIPIAICLAIGTLQLKR 351

Query: 359 TK 360
            K
Sbjct: 352 AK 353


>gi|312884632|ref|ZP_07744335.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367724|gb|EFP95273.1| hypothetical protein VIBC2010_15702 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 356

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 135/358 (37%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + +  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTLIATTSLVLATFVGLSAIIKYVEQVRKVGEGTYDLIQALFFVILSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L   A        +   ++ R  +D +I I+K + +          +   
Sbjct: 123 APQAQKMARDLRTFATSGGALMSVRTGVWARDAND-FIFINKVDDDKIYGLNMWRFNDQK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIVL 240
           Q  +  +A+           ++ D EV         +   +K   +         + + +
Sbjct: 182 QLSQTLFAKEVDYVS-ENIWVMKDAEVTDMEGEVKLEKHFLKEYEWKTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +L  L     +      +    Y   F +++TQ L   +  L++   +    R++
Sbjct: 241 KPEELSLGGLYE-YVSYLKSSEQDPSRYELAFWRKVTQPLSIGVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               + +  +    +      F+G   +++ I   P +  I+   +F + +IFLL  K
Sbjct: 300 TMSARILSGVIAGFTFYISSEFFGPLSLVYNIP--PIFGAIMPSCVFLLIAIFLLQRK 355


>gi|163803713|ref|ZP_02197573.1| putative permease [Vibrio sp. AND4]
 gi|159172496|gb|EDP57361.1| putative permease [Vibrio sp. AND4]
          Length = 356

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 134/357 (37%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGTYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRAFALSGGSIVSMRAGVWARDAND-FIFIGKVEDDKLYNLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++  +     ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENAITKRDIEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             + +LS L +   +      +    Y   F ++L+Q L   +  L++   V    R++ 
Sbjct: 242 PEELSLSGLYD-YVSYLKATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    S      F+G   +++ I   P +  +    +F   +I LL  K
Sbjct: 301 MGARILSGVVAGFSFYISSEFFGPLSLVYGIP--PVFGALAPSLVFLAIAIALLRRK 355


>gi|90411865|ref|ZP_01219873.1| putative permease [Photobacterium profundum 3TCK]
 gi|90327123|gb|EAS43495.1| putative permease [Photobacterium profundum 3TCK]
          Length = 356

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 146/359 (40%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  +   T  L   L      IP  +
Sbjct: 3   KILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGDGTYDLWKALIYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ + + ++L A          ++  ++ +  +D +I I + +  +TL  + I    D 
Sbjct: 123 APQAQKSARELRAIWTSGGNMLSVQSGVWAKDGND-FIYIGRVHEQSTLNAVNIWQFDDE 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
            T  K+ +A+S S   D Q  +L D  V   S I +  +  KF +   +T  +    + +
Sbjct: 182 DTLSKMVFAKSASF-TDEQGWLLADVTVTNISKIQQ--TNTKFDTLPWKTSLSPDKLAIV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
            +K  +  LS + +   +      +    Y   F ++L Q +   +  L++   V    R
Sbjct: 239 TVKPEELALSGVYD-YVSYLKESKQDASRYELAFWRKLLQPISIAVMMLLALSFVFGPLR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++    + +  +    +        F  +      +P    +    +F + +I+LL  K
Sbjct: 298 SVTMGARVLSGVIFGFTFYISNEV-FGPMSLVYRLHPAIGALGPSLVFLLITIYLLRRK 355


>gi|21230125|ref|NP_636042.1| hypothetical protein XCC0650 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769884|ref|YP_244646.1| hypothetical protein XC_3584 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111655|gb|AAM39966.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575216|gb|AAY50626.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 360

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 127/358 (35%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L+L + + + +      
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGIGPRRMLRPILWLVVPVVVVIGACSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + ++  +P+   L  +F+   +
Sbjct: 121 LGPWASRTAELMLEDANRSVVMAGLESGKFTPLSGGGVVYLTTISPDGKGLGKVFMQRQK 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D +   +  A+ G++       + + L DG        ++  D  +M F S  +      
Sbjct: 181 DDRID-VVTAERGAMFFEGKTDRYLRLEDGHRIEGPAGAQGLDYRLMTFASNDVALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +         +   L+           +     R+E H+RL   L         +    
Sbjct: 240 KAHDANDPEVMSTFKLI----------GDARPIARAELHRRLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYLVGTNLMIVGTQWIANGKVPGALGLWWLTLPLLAVSIW 345


>gi|255038424|ref|YP_003089045.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
 gi|254951180|gb|ACT95880.1| permease YjgP/YjgQ family protein [Dyadobacter fermentans DSM
           18053]
          Length = 360

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 134/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + Y+++    +++     IV I  +I   ++++        L  I++     LIP  
Sbjct: 4   KILDRYLIKNFLITYVFVAFVIVLIICMIDYTEKVDDFLDKKAPLREIIIDYYLNLIPYW 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  ++P    + T    + +   TE++ + ++G S   +++P +  A++L I  FI    
Sbjct: 64  INYISPLMVFIATVFFTSRIAARTEIIAMLSSGISFGRMLRPYMAGAVVLGILTFIQVGW 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + PK    I+    K  +   F +   N+   +  D+Y  +  YN        F +   +
Sbjct: 124 VLPKAN-KIRNSFEKTYVKNEFYFSGHNVHITIAPDVYAYLESYNTTTQTGNKFTMETIK 182

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            T+  + +YA        +    L + +V     + + +S       T+     +  +  
Sbjct: 183 GTKLLQKFYADKIVWQPKKGKWTLQNYQVRTLDSLGERLSRGTEIDTTINLSPKDFESDY 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L        +   + LE Y  E + R TQ    +I   I ++        
Sbjct: 243 NLFETFTLPELNAYIDLLKSRGADGLEVYLIEKYTRFTQPFAILILTAIGVIV-----SA 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL---YLFLFCISSIFLLMIK 355
           R+ ++     I+L       +   +++ K       I  L   +L     S+I +L+ K
Sbjct: 298 RKSRRGVGWQIALGFMLAFIYILFFLLSKGVAEAGTINTLFAVWLPNIVFSAIGVLLYK 356


>gi|88859093|ref|ZP_01133734.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
 gi|88819319|gb|EAR29133.1| hypothetical protein PTD2_08814 [Pseudoalteromonas tunicata D2]
          Length = 354

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 140/360 (38%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ R I ++   + L +V I+ +I+ ++++  V   +  +      + + IP  
Sbjct: 1   MKILDWYLGRSILQTTGFALLVLVGISTLIKFIEQLKYVGRGSYDVMTAGLYTLFSIPAD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  N+EL+++   G SR  +I+ V+  A+++++ +      
Sbjct: 61  VVTFFPMATLIGGLTGLGALASNSELVVMQAAGLSRFEIIRSVMKTALVMALCVMAMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+ +   K+L   A    +     + ++ + D D+++ I   + N  L G+ +   ++
Sbjct: 121 GVPEAQKQAKELRTYAISGGSIFNARQGVWAK-DGDVFLNIDNVDDNGQLNGLKMYQFNK 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                 I  AQS      R   +L   +              K + Y  +        + 
Sbjct: 180 SLDLVAITNAQSA--ISHRDGWLLKGVKTIYLDEQEVRQENTKEQLYVSELTPDKLGIVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           LKA   + + L+    +      +   +Y     ++L Q +   +  L++   +    R+
Sbjct: 238 LKAESLSFTGLIG-YLDYLKKNEQDTSSYELALWRKLMQPVSIAVMLLVALSFIFGPLRS 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +    + +  +   +         F  I+   E +P    +    LF    I + +IKK+
Sbjct: 297 VSMGARIVMGVITGIVFHLSDKI-FGPIVLVYELSPVVGAVFPSLLF--IGISIYLIKKR 353


>gi|260494012|ref|ZP_05814143.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198158|gb|EEW95674.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 363

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 130/363 (35%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P +
Sbjct: 2   IKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGIFI-- 175
           I  K  + I      +   +L     +EN  F    D     + + N      + I +  
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLYLMGEINRETGVAENIEVVK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D+  ++  +I  A+S   D +    I ++  ++      + I+  ++KS   + + +N 
Sbjct: 182 FDTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVD-TKETITKTEYKSKLYKDDPSNF 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +         L           E    Y SE  KR +      I   I +     
Sbjct: 241 IRASAEDPRMLTIKELKKTIKEQKSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV--S 298

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLM 353
              VR  +    + I +   +G +   S     +  N    P +  ++       I +  
Sbjct: 299 SKYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGIYF 357

Query: 354 IKK 356
           + +
Sbjct: 358 MNR 360


>gi|219871562|ref|YP_002475937.1| permease [Haemophilus parasuis SH0165]
 gi|219691766|gb|ACL32989.1| permease, inner membrane protein yjgQ [Haemophilus parasuis SH0165]
          Length = 355

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI R I  S +++   +V +  +I+ ++    V   +         +   +P  
Sbjct: 1   MNVLERYIGRTILASIMLTLFMLVGLGAIIKFVEEFRSVGRGSYDGLHAAYYTLLTMPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +   +EL+++ + G SR  +   V+  AI L +   I    
Sbjct: 61  IETFFPIAALLGSLMGLGGLASRSELVVMQSAGFSRFRIGLAVMKTAIPLMVITMIMGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +       +  F+  D + +I I +      L  I I    +
Sbjct: 121 GVPQTEQYARNMRS-IAQSGGSMLATQGGFWAKDGNDFIYIRQIQDERNLNNILIYQFEN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  A+  +     Q  +L   +           +    +++      +    + L
Sbjct: 180 QVLKSIKQAEKATY--SEQGWLLQQVDKSEIHESGITQTRETDQAWKTSITPSKLGIVSL 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L +          +  + +   F +++ Q +   +  L++I        +R
Sbjct: 238 KPESLSISGLAD-YVGFLKDTGQDSKRFEITFWRKVFQPISMAVMMLLAISFIFGP--LR 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I I +   F  +       +    +   P  I  L   L C+S ++ L+ KK+
Sbjct: 295 SSTMGAKIVIGILAGFVFYVANIVFGNLSLIVSWLPVPIGALIPSLLCLSVVWWLLNKKR 354


>gi|24372948|ref|NP_716990.1| hypothetical protein SO_1370 [Shewanella oneidensis MR-1]
 gi|24347091|gb|AAN54435.1|AE015581_2 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 352

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 133/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    + L  I +   + 
Sbjct: 121 GAPIAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A+S     D  + +L D +    S     +  +    +         S + 
Sbjct: 180 ELKLTNVVHAESALFSKD--SWLLTDVKRTDLSYDEVKLEHLDEDVWRSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+       N   +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSIRGLMG-YLEYLNSNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|330890526|gb|EGH23187.1| hypothetical protein PSYMO_17673 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 231

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 11/224 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5   RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +        +   +E+ ++  TG S+  L+   +  A L+ + +      + P+ 
Sbjct: 65  PLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLAITMGPATLVGLLVAWLSFSLAPQG 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNT-LQGIFIV------D 177
            +    L  K      F  L    F  L D   I    + + + + L G+FI       D
Sbjct: 125 ATQFSLLINKQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSGD 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRKSPISKDI 218
                   +  A+ G  ++       +IL +G  +  +P + D 
Sbjct: 185 KSKDNGITVLVAEKGHQEVRPNGSRFLILENGYRYDGNPGAADY 228


>gi|197119770|ref|YP_002140197.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089130|gb|ACH40401.1| membrane protein, YjgQ-related protein [Geobacter bemidjiensis Bem]
          Length = 360

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 142/368 (38%), Gaps = 19/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI R   +   +     + I  V+  +++++  +    S   L       IP +
Sbjct: 1   MNILTRYIARAYVKMLSLCLGSFIAIYLVVDFMEKVSRFTRYGASWKHLALFFITKIPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M T   L +++  +EL  I + G S   +  P+L +++L+S+ +      
Sbjct: 61  IIDAAPLAVLMATLLTLGTLSLTSELTAIRSCGVSLFRISLPILVISVLMSLGVLAIGEF 120

Query: 121 IEPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIV 176
           + PK  +  +    +    + + +  + ++N++FR ++   ++ S + P  N L+GI + 
Sbjct: 121 VLPKTYAQ-RTYIQEVLIQKKSPSAFFRQQNIWFR-EEGTVLRASLFEPARNELKGITLW 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY--TLQTESAN 234
           + +      +   ++    L  +  +  D  V R+    +  S  K++     LQ + A+
Sbjct: 179 ELQPGTGEPLKRTEADLAILGAKGWMFRDAVV-RQFRDGEVSSTQKYRELPVELQLKPAD 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             T+   ++  +L  L                 Y ++ H R++      +   + I  A 
Sbjct: 238 LKTLGKFSDSMSLVELSRYCRK-LRASGYDPTRYVTQMHSRISMPFGCAVMAFLGIPFAL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +              I+  +   +  GF Y I++ +  +   + +L   +   ++ F+  
Sbjct: 297 RGG--------RSSGIAFGVGLSIGVGFLYVIVNSVIISVGQVGLLPPVVAAWATNFIFF 348

Query: 354 IKKKYTKI 361
           +   +  +
Sbjct: 349 VAGAWLSL 356


>gi|226355960|ref|YP_002785700.1| permease YjgP/YjgQ [Deinococcus deserti VCD115]
 gi|226317950|gb|ACO45946.1| putative permease YjgP/YjgQ; putative membrane protein [Deinococcus
           deserti VCD115]
          Length = 381

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 124/387 (32%), Gaps = 38/387 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +    L   L    +            ++     L ++ +   Y +P  
Sbjct: 1   MTRLTRYVTAELIPPLLAGTLLFTAVLSFGYFFISSQWLA--GVPLGLVSRWIAYQVPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      M+   EL+ + + G     + +PV  +A L++         
Sbjct: 59  LVKVFPMAIVLMTVVAFGRMSTERELVAVQSGGIGLGRVARPVALVAGLVTALALWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIV--D 177
           I PK     + L   A      S L       L   L +   S  +    L+G+ +   +
Sbjct: 119 IAPKANVETRGLYWDALTGAGLSQLV-GKTVDLGGGLTLALASYDSATRELRGVRVEKWN 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAII-------------------LNDGEVHRKSPISKDI 218
           +   +   + +A  G+ + ++ A+                     ND    R++  +   
Sbjct: 178 ADAPRRATLIFADKGTFENNQLALSGYQVYTVDYEAASELNRVPENDPLAFREAVQNVFP 237

Query: 219 SIM----KFKSYTLQTESANSSTIVLKAN----DQNLSFLLNPNPNNPNYRPELLETYRS 270
           S++       +  + T  +   T+   A+    D      L      P  +    +  R 
Sbjct: 238 SVVIPEKTTDTLKVDTGLSRKQTLAQYADAIGADSEGWPELITALTAPGVKASERQAARV 297

Query: 271 EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE 330
             +++L      ++  L ++  A +      R     + I+L I+   +  F   +    
Sbjct: 298 NLNRKLALPFANLVLALSALPFALRFG----RTLGVSLGIALLIAVAYYLLFFVGLTVAS 353

Query: 331 QNPYYIPI-LYLFLFCISSIFLLMIKK 356
             P    + ++L     +   L M+++
Sbjct: 354 AMPAVPEVGVWLANIVFAVAGLWMLRR 380


>gi|322514885|ref|ZP_08067902.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
 gi|322119139|gb|EFX91289.1| YjgP/YjgQ family membrane protein [Actinobacillus ureae ATCC 25976]
          Length = 360

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++ +    V   +         S  ++P+ 
Sbjct: 6   MNILERYIGKTIITMIFAVLLMSSGLVFIIKLAEEFKDVGKGSYDALTATYYSLLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR  +   V+  AI L +F  +    
Sbjct: 66  IKEFIPVVALIGGLLGLGNLASRSELVVMQSSGFSRFRIGLAVMKTAIPLIVFTMLVSEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    + +     +  F+  D + +I I        L  + I    D
Sbjct: 126 GIPQTEQYARNMRS-IAQSGSSMLSTKGGFWAKDGNDFIYIRHIENERKLNNLSIYHFED 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +  AQ+   +     +       + D  + +   ++KD               + 
Sbjct: 185 KSLKSVTQAQNAIFNGKNWTLQNVQTSSIADNSIQQAKEVNKDWQTT--------ITPSK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + LK    ++S L +          +  + ++  F +++ Q +   +  L++I    
Sbjct: 237 LGIVSLKPESLSISGLSD-YVGFLKETGQNSKRFQIAFWRKVYQPISMAVMMLLAISFVF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       +FI +   F  +     F  +       P  I  L   L C+S ++ 
Sbjct: 296 GP--LRSSAMGTKLFIGIIAGFVFYVSNIVFGNMTLVFSWIPVAIGALIPSLICLSIVWW 353

Query: 352 LMIKKK 357
           L+ KK+
Sbjct: 354 LLTKKR 359


>gi|258405420|ref|YP_003198162.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797647|gb|ACV68584.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
          Length = 395

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 115/370 (31%), Gaps = 15/370 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +     I + +   F +     + +  V ++L+   L  S   +L  L ++  YL P  L
Sbjct: 4   RRLSREIFKELVYVFSLCLGSFLALLLVGRLLKLRELFLSQDVALLDLGQLFLYLSPFFL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +        M+ + EL+ +   G S   L+   L   +L +          
Sbjct: 64  LLLLPIASMLSVFLTFLRMSTDRELVALRAAGLSLWQLLPVTLLFLLLCTAANIGIGIYG 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
                   +          T   L+  +F +    L I   + +     L  +F+ D+  
Sbjct: 124 VSWGMDNFRATILDMAKTRTQLVLQPGVFNQDFPGLTIFARQVDRETGDLSTVFVEDTSR 183

Query: 181 TQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSY----TLQTES 232
            Q      A  GS+  D    +    L +G ++R    S   S++ F  Y     L    
Sbjct: 184 GQGAIGIVAPQGSLTTDTRKGQVVFSLRNGRLYRHDRDSA--SVLGFGEYRIALDLDKII 241

Query: 233 ANSSTIVLKANDQNLSFLL---NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           +       +  + + + L+   +                  E HKRL   L  +  G+ +
Sbjct: 242 SGVELEEKRPKEMSWTRLMDYRHQADLAQTRDATFDRKVDVETHKRLALPLACLALGIFA 301

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISS 348
           +  A     +++            + + +F     +       P        +    +  
Sbjct: 302 MPLAALFEGLKRHFGFLVSLGLFLVYYALFSAGLSLGETGTLAPAIGLWAPNILFMGLGG 361

Query: 349 IFLLMIKKKY 358
           I   M  ++ 
Sbjct: 362 ILFHMAARER 371


>gi|170077642|ref|YP_001734280.1| YjgP/YjgQ permease superfamily [Synechococcus sp. PCC 7002]
 gi|169885311|gb|ACA99024.1| putative permease, YjgP/YjgQ family superfamily [Synechococcus sp.
           PCC 7002]
          Length = 378

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 131/368 (35%), Gaps = 15/368 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAW-VIQILQRINLVSSSTESLNILLKISGYLIPTV 60
              + YI+  +   FL        +   +  + + +  V ++  +  I  +I    +P  
Sbjct: 9   SLLDRYIMAQLVGPFLFGLGIFTSLGLTIGVLFEVMRNVVANEITWAIAFQILALRLPEF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    + T    +S++  +E++ + + G   + L+ P L L +L++   F   + 
Sbjct: 69  LVLGLPMATLLGTLTAYSSLSSFSEIIALRSVGLPPLRLMLPGLLLGLLITGITFGLNDW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-----------YIKISKYNPNNT 169
           I P+       ++  AQ   T  Y E+N+ +     +            +  ++      
Sbjct: 129 IVPQTTKQASTIANIAQGEATIDYQEKNIIYPEYQRVKTATGNREILKTLFYAETFDGTQ 188

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  + I+D     T +I  A +   + + Q  ++ DG +++         I +F++  L 
Sbjct: 189 MNNLTILDRAAVDTQRIITAAAAQWNANEQGWLVQDGSIYQIGANGSFSDIEQFETNFLN 248

Query: 230 TESANS--STIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFG 286
              A    +T   + N+  L  +     +    R E  + T +    ++ +     ++F 
Sbjct: 249 LSDAPLILATRCQRPNEMTLQVIDVCLESLKLSRNERRIRTLQVRKQEKFSVPFVCIVFA 308

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           ++      +     +   +      +   + +    S +       P+        L  +
Sbjct: 309 MVGSAIGLRPQNSSRATSVGLSVAIVFAYYLISVISSSMGVWGTITPFMGTWFPNLLGLV 368

Query: 347 SSIFLLMI 354
           ++  +L  
Sbjct: 369 AAGTILWR 376


>gi|156975867|ref|YP_001446774.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
 gi|156527461|gb|ABU72547.1| hypothetical protein VIBHAR_03633 [Vibrio harveyi ATCC BAA-1116]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 132/357 (36%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRAFALSGGSIVSVRAGVWARDAND-FIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             + +LS L +   +      +    Y   F ++L+Q L   +  L++   V    R++ 
Sbjct: 242 PEELSLSGLYD-YVSYLKATEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    +      F+G   +++ I   P +  +    +F   +I LL  K
Sbjct: 301 MGSRVLSGVVAGFTFYISSEFFGPLTLVYGIP--PVFGALAPSLVFLAIAISLLRRK 355


>gi|16125010|ref|NP_419574.1| hypothetical protein CC_0757 [Caulobacter crescentus CB15]
 gi|221233731|ref|YP_002516167.1| hypothetical protein CCNA_00794 [Caulobacter crescentus NA1000]
 gi|13421992|gb|AAK22742.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962903|gb|ACL94259.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
          Length = 397

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 97/255 (38%), Gaps = 6/255 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + Y+LR          +  +    + ++++  +L+S +TE L  L ++   L P  +
Sbjct: 5   NTLDRYLLRRTLAPMSAVLISTMVAFLMERLMRSFDLLSQTTEGLRYLAELLVNLTPHYV 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P  F +    V+  +N+++E+  I  +GTS      P + + +LL +   I    +
Sbjct: 65  GLTLPGGFFIGLFVVVNGLNKSSEIDAILASGTSLTRFTAPFVAMGVLLMVLSVILFGFV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
           +P  R     +   A+ A     +          D ++   + + +   LQ +FI     
Sbjct: 125 QPYSRYAYHAVLHAAENAGWNGDVRPKALLSAGSDFFLTADRTDASGRYLQQVFIRRIDP 184

Query: 181 TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                I  A S  +  +      A+ L +G     +       ++ F        S ++ 
Sbjct: 185 NGREDILTAVSAVVHKNPADSHIALELTNG-RQISTVAGAQSYVVNFSRLMFDVPSGDAG 243

Query: 237 TIVLKANDQNLSFLL 251
            + L+  D +   L+
Sbjct: 244 LLRLRGEDVSELTLI 258


>gi|19704365|ref|NP_603927.1| hypothetical protein FN1030 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714617|gb|AAL95226.1| Hypothetical membrane-spanning protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 363

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 125/366 (34%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQ---GIFI 175
           I  K  + I      +    L     +EN  F    +     + K N    L     +  
Sbjct: 122 IYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEVVK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            ++  ++  +I  A+S   D +    I ++  ++          I     Y       + 
Sbjct: 182 FNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAKI----EYKSNLYKDDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +  + +      +         +    E    Y +E  KR +      I   I +  
Sbjct: 238 SNFIKASAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSV 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWVPNILYLIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 IYFMNR 360


>gi|54113843|gb|AAV29555.1| NT02FT0414 [synthetic construct]
          Length = 360

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 126/357 (35%), Gaps = 10/357 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y    I  +F    LFI+ I     +++      S    ++ ++K     IP  + 
Sbjct: 2   ILEKYYNIDIVNTFTSITLFIISIVSANLLIRLFQEAYSQGLGIDSIVKFVILTIPENVS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    +           N E+ +    G + + ++K  L   + L+I   I+   + 
Sbjct: 62  LVAPIAIFLAIVICFGKYFANNEMFVTIAGGITWMQIVKNTLKPVVALTIITLITVMYLN 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DT 181
           P  + T+    A        S + +    +  D   I I   +  NTL  +F+  +    
Sbjct: 122 PLSKQTLDIYRASLSAKALLSSITDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQD 180

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +K+  A +  I  D+ A  I   +  ++ K+  + + S    K         +     
Sbjct: 181 GEYKVMTAPTAKIVSDKTAAYIDFMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D+     L  N N+ N        Y++EF  R+   +  ++  L+++     R   
Sbjct: 241 HDRVDRLYMHTLIENFNDKN----NGTAYKAEFLGRINNAISVIVSSLLALALCRLRPRQ 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            +  K+ P  + L+I       F   +      P +I   +L     +   +  I+K
Sbjct: 297 NKYAKLLPSVVVLAIYLCTNM-FINTLMANSSVPVWIGF-WLPHIFFTIFAVRTIRK 351


>gi|254229297|ref|ZP_04922715.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262393203|ref|YP_003285057.1| hypothetical protein VEA_002430 [Vibrio sp. Ex25]
 gi|151938221|gb|EDN57061.1| putative permease, YjgP/YjgQ family [Vibrio sp. Ex25]
 gi|262336797|gb|ACY50592.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 356

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 137/361 (37%), Gaps = 15/361 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L + A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRSFAISGGSIVSVRSGVWARDAND-FIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS----KDISIMKFKSYTLQTESANSST 237
              K+ +A+      D    ++ D ++      +    +DI  M++ +          + 
Sbjct: 182 NLQKVIFAEEVDYQQDNN-WLMRDVQITDMKNENVISKQDIEQMEWHT---SLAPDKLAV 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADK 295
           + +K  + +LS L +          +    Y   F ++LTQ L   +  L++   V    
Sbjct: 238 VTVKPEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPL 296

Query: 296 RALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R++    + +  +    +      F+G   +++ I  +P +  +    +F   +I LL  
Sbjct: 297 RSVTMGARVLSGVVAGFTFYISSEFFGPLSLVYGI--SPVFGALAPSLVFLAIAIALLRR 354

Query: 355 K 355
           K
Sbjct: 355 K 355


>gi|240014488|ref|ZP_04721401.1| hypothetical protein NgonD_07558 [Neisseria gonorrhoeae DGI18]
 gi|240121010|ref|ZP_04733972.1| hypothetical protein NgonPI_04426 [Neisseria gonorrhoeae PID24-1]
          Length = 356

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 122/372 (32%), Gaps = 28/372 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A     K     T  +L+E        +  I +    P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTDHTGLWLKEK-------NSIINVRGMLPDHTLLGIKI 173

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D     +   A S  ++ D     L +           + S    +++ +      
Sbjct: 174 WARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNL 232

Query: 235 SSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +++K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++  
Sbjct: 233 MDVLLVKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFA 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R       +F  + +          F +        P+    L    F + +
Sbjct: 289 F--TPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLA 346

Query: 349 IFLLMIKKKYTK 360
           +   +I+K+  +
Sbjct: 347 V--WLIRKQEKR 356


>gi|157374155|ref|YP_001472755.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
 gi|157316529|gb|ABV35627.1| permease YjgP/YjgQ family protein [Shewanella sediminis HAW-EB3]
          Length = 352

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 129/349 (36%), Gaps = 15/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  S  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MRILDLYIARTIVSSSALCLLILTGLSGIIKWVDQLRLVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L M  P    +     +  +  N+EL+++ ++G SR  +    +  AI L + +      
Sbjct: 61  LEMFFPLGVLLGALIGMGMLASNSELVVMQSSGLSRWQITLSAMKTAIPLMLLIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ + D DL++ I +    N L  I + +  +
Sbjct: 121 GAPVAEQKANELQATKLSGGSLIKSSRGIWAK-DGDLFVNIGEVEDINHLGNITLYEFDE 179

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T    +  +A+ G    D   ++  D      +     ++ +    +         S + 
Sbjct: 180 TLSLVRTIHAEHGVYSNDHWRLM--DVRQTDLTEDKVTLTDLTLYRWESTLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     ++L Q +   +  L+++         
Sbjct: 238 VKPESLSIQGLMG-YLDYLKVNNQDSARYELALWRKLLQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                +  + +   +  GV  GFS+ I      P  + ++Y     I +
Sbjct: 294 -----LRTVTMGARVLLGVIAGFSFYISSEIFGP--LTLVYGVPAFIGA 335


>gi|304410147|ref|ZP_07391766.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|307302142|ref|ZP_07581900.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
 gi|304351556|gb|EFM15955.1| permease YjgP/YjgQ family protein [Shewanella baltica OS183]
 gi|306914180|gb|EFN44601.1| permease YjgP/YjgQ family protein [Shewanella baltica BA175]
          Length = 352

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    + L  I +   + 
Sbjct: 121 GAPIAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVENISKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A       DR    L D +    S     +  ++   +         S + 
Sbjct: 180 ELKLTNVVHADRAVFSQDR--WRLFDVKRTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 IKPEALSIRGLVG-YLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|160876366|ref|YP_001555682.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|160861888|gb|ABX50422.1| permease YjgP/YjgQ family protein [Shewanella baltica OS195]
 gi|315268556|gb|ADT95409.1| permease YjgP/YjgQ family protein [Shewanella baltica OS678]
          Length = 352

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   T S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + + +    
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITMSAMKTAVPLMLLVMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    N L  I +   + 
Sbjct: 121 GAPIAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVENINKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A       DR    L D +    S     +  ++   +         S + 
Sbjct: 180 ELKLTNVVHADRAVFSQDR--WRLFDVKSTDLSYEKVVLEYLEEDQWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 IKPEALSIRGLVG-YLDYLKTNSQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAVAPSLLFTGVAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|296327425|ref|ZP_06869972.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155438|gb|EFG96208.1| YjgP/YjgQ family permease [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 363

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 124/366 (33%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+F+F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLFVFFVNNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQ---GIFI 175
           I  K  + I      +    L     +EN  F    +     + K N    L     +  
Sbjct: 122 IYTKSLAKINFYRRGEIDETLKLPTTKENAFFINNTEGYLYLMGKINRETGLAENIEVVK 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            ++  ++  +I  A+S   D +    I ++  ++                Y       + 
Sbjct: 182 FNTEISKPKEIITAKSAKFDTEENKWIFSNVNIYNVETKETTAK----TEYKSNLYKDDP 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +  + +      +         +    E    Y +E  KR +      I   I +  
Sbjct: 238 SNFIRASAEDPRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSV 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 VR  +    + I +   +G +   S     +  N    P +  ++       I 
Sbjct: 298 --SSKYVRGGRTTMNLVICVVAGYGYYLV-SGAFEAMSLNGILNPFIASWVPNILYLIIG 354

Query: 351 LLMIKK 356
           +  + +
Sbjct: 355 IYFMNR 360


>gi|189464158|ref|ZP_03012943.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
 gi|189437948|gb|EDV06933.1| hypothetical protein BACINT_00494 [Bacteroides intestinalis DSM
           17393]
          Length = 632

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 102/270 (37%), Gaps = 22/270 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 4   IKKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    +       +     ELL +   G S + +++P++   I +    F  +N+
Sbjct: 64  VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIIFICGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK ++ +  L    +       + E +F+   D   + +   N     L  + I +  
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
              +  +I  + SG +++        + L +GE                +R+    +  +
Sbjct: 184 KGFENAQIIKSDSGRLEMTADKQHLYLHLYNGEQFENLKSQNMNQKNVPYRREAFREKHA 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSF 249
           I++F S       A   +    + D  +  
Sbjct: 244 IIEFNS-DFNMVDAGIMSSQSNSKDMAMLQ 272


>gi|260062387|ref|YP_003195467.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
           HTCC2501]
 gi|88783950|gb|EAR15121.1| hypothetical protein RB2501_12362 [Robiginitalea biformata
           HTCC2501]
          Length = 360

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 129/360 (35%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +F +  L  V I  ++ + ++I  +  +   L  +L   G     +
Sbjct: 2   LTIIDRYILKKYLSTFGLMLLLFVPIGIMLNLAEQIGKMIDNEAPLVEILIYYGNFTIYI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + M  NTE++ I ++G S    ++P    A ++++ +F+    
Sbjct: 62  GSLLFPIFLFLSIIFFTSKMANNTEIVAILSSGVSFGRFLRPYWIGASIIAVLMFLMGMF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +   K     +   +  N+F +L +  YI +S ++P   +   F  +   
Sbjct: 122 IVPSASKGFNEFKFKYLKKGSKDRVTSNIFNQLGESDYIYVSSFDPARQIGYNFTYEHFG 181

Query: 181 TQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 Y   S +I    +     L           ++ +   +        +  + + +
Sbjct: 182 EDGELEYKISSANIRWLEEDSLYRLTSYTRRNLRGDTEIVETRRRLDTLFAFQIDDLTPV 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A  +NL  L     +        + TY    +KR    +   +  +I +      ++
Sbjct: 242 SYIAETKNLFELNQFIADQRRKGASNVNTYVMVKYKRWALPVTAFVLTIIGVAV---SSI 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            R+      +   + ++F   +         EQ+  + P+L + +       +   M++K
Sbjct: 299 KRRGGMGVNLAFGIGVAFIYIFMDKVFGTLAEQSG-FPPLLAVGIPNIFFLVLGYFMLQK 357


>gi|297171743|gb|ADI22735.1| predicted permeases [uncultured verrucomicrobium HF0500_27H16]
          Length = 412

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 123/362 (33%), Gaps = 10/362 (2%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + ++     +SF ++   I+ + ++  +   +  +         +L+    L P +L  V
Sbjct: 51  DRHLASEWLKSFGITTGAILGLFYIQNLYDNLGDLLEHGAGAAEILQYYLILTPALLSPV 110

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    + T     S++RN E+  + + G S  +L++  +FLA LLS+ LF+  N    K
Sbjct: 111 LPLSVLVATLFSYGSLHRNQEITAMRSMGRSVWSLMRVNMFLAALLSVGLFLLGNGGLSK 170

Query: 125 CRSTIKQLSAKAQL------ALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVD 177
                ++   +         +   + ++   F       L++        +   G+++  
Sbjct: 171 SAEKSREFYEELMQPPFDPASAEVATIKHLTFENASSHRLWVMNRYDPSKHKGHGVYLYL 230

Query: 178 SR-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +  + + +++     +    +  +G           +  + F+   ++   +  +
Sbjct: 231 RYVSGKARERFTSRTAEFMPETATWVFREGRQVFFDEAGLSLRFVDFEELKMEGLESPLT 290

Query: 237 --TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 K +D +L  L      +   +      Y   +H+ L      ++  L+ +  A 
Sbjct: 291 LLARQKKLSDLSLRELRELAEVSQGGQGSEARRYGVRYHQALAGPFNCMLALLVGVPFAI 350

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               V                F +      +  +    P     L + L    ++FL+  
Sbjct: 351 AGTRVNPMVGATKAIGIFVGYFLLGGASRMLGQQGILEPAVAGWLPMGLMAFYALFLIGR 410

Query: 355 KK 356
            +
Sbjct: 411 VR 412


>gi|152985629|ref|YP_001346669.1| hypothetical protein PSPA7_1284 [Pseudomonas aeruginosa PA7]
 gi|150960787|gb|ABR82812.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 355

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 123/362 (33%), Gaps = 14/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N + S++  +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDI-SASYGIGEALRFIALTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   A AQ        +  L+       YI I+   PN  L G+       
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLW-HRQGREYIHINAVQPNGVLYGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSST 237
                   +A+    + D     L D       P  K   ++K   + +  Q      +T
Sbjct: 179 QRGLQSASFAKRARFETDH--WQLEDVTTTLLHPQEKRSEVVKLPTERWDAQLSPQLLNT 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V++    ++S L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 237 VVMEPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R++   ++    IF  + + F        +        +   +  +      ++  L + 
Sbjct: 296 RSVTLGQR----IFTGVLVGFVFRIAQDLLGPSSLVFDFPPLLAVVIPASACALAGLWLL 351

Query: 356 KK 357
           ++
Sbjct: 352 RR 353


>gi|118602490|ref|YP_903705.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567429|gb|ABL02234.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 371

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 143/370 (38%), Gaps = 28/370 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +     +  + I  + +  Q++  I   S     +  LL + G  +   +
Sbjct: 16  SILARYLMRNVSVLLSVVFIVISLVVFGNQLVLIIKETSKEGIPIADLLPLVGLNMIRDV 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++      +     ++ + + +E +++++ G      +  +  L I++ IF+FI   ++
Sbjct: 76  VLILSLSLLLAIILSVSKLYKASEAIVMNSLGLGDKHFMVFIQPLVIVIVIFIFILTTVV 135

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNP-----NNTLQGIFI 175
            P  +     +  +++    FS++++N F    ++D+    SK +         ++ IFI
Sbjct: 136 VPWSKQQRGLIMERSENTPEFSFIKKNEFQEFKNNDIVFYASKVSDADNAKEQNMEEIFI 195

Query: 176 VDSRDTQTHKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
               +     I  A+        + +   + L +G  +   P +K+  I+ FK Y LQ  
Sbjct: 196 YTLVN-NEPVITLAKQAQKYTNFNTNSVYLRLKNGTRYHGFPSNKNKKILNFKLYDLQII 254

Query: 232 SANSS---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                   + V K   ++   LL  N               +EF  R++Q L  +I   +
Sbjct: 255 DGKMQKSISTVTKVESKSTFELLFSNKLTE----------IAEFQWRISQPLSILI---L 301

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           S++         +  K   + + + + F V+     I     +     PI+ L+   +  
Sbjct: 302 SVLGVLLGKTSPRSGKNLGVLVGV-VMFIVYNNVLLIAKSTLERGESSPIVGLWWVHLVM 360

Query: 349 IFLLMIKKKY 358
           + L+ I  K+
Sbjct: 361 LLLIFIFYKW 370


>gi|56461046|ref|YP_156327.1| permease [Idiomarina loihiensis L2TR]
 gi|56180056|gb|AAV82778.1| Predicted permease [Idiomarina loihiensis L2TR]
          Length = 356

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 131/360 (36%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI   + R+ L+S   +  ++ +I+ ++++  V     ++        Y +P  +
Sbjct: 3   SILDKYIGLSVLRTSLLSLAVLTGLSSLIRFVEQLKAVGRGDYNVMDAALFVFYSLPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR+ +I  V+  AI++ + +      I
Sbjct: 63  ETFFPMAALLGGLIGVGMLASNSELVVMMAAGRSRLNIIGAVMKSAIIMMVAVMAIGEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  + + ++A    +    ++ ++ +   D +I I +      L  + I D  D 
Sbjct: 123 APPMEAQGRAIRSQAISGGSLISAQQGVWAKDGSD-FINIGEVEDTGRLNDVLIYDFNDN 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL----QTESANSS 236
           +   K+ YA++ +   D+    +    V +      DI +++ +  ++            
Sbjct: 182 RELQKVTYARTANFSGDK--WRMQQVTVTQLD----DIRMLRDEKPSMVWQSSLTPDKLG 235

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + +K    +++ LL+          +  E Y     ++L   +   +  L+++      
Sbjct: 236 VVTIKPESLSITGLLD-YLTYLESNQQSAERYELALWRKLFAPITVAVMLLVALSFIFGP 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                      + +     F V       + ++ Q P  +  L   +         M  +
Sbjct: 295 LRSTTMGARILLGVITGFGFHVSNEIFGPLAQVYQIPAILGALLPSILFAGVAVYFMRGR 354


>gi|224536882|ref|ZP_03677421.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521506|gb|EEF90611.1| hypothetical protein BACCELL_01758 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 632

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +++L +   Y   T+
Sbjct: 4   IKKLDIFILKSFCTLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMSVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    +       +     ELL +   G S + +++P++   IL+    F  +N+
Sbjct: 64  VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIVFIILICGVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK ++ +  L    +       + E +F+   D   + +   N     L  + I +  
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPELDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
              +  +I  + SG ++   D+Q + L+
Sbjct: 184 KGFENAQIIKSDSGRLEMTADKQHLYLH 211


>gi|33602710|ref|NP_890270.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
 gi|33577152|emb|CAE35709.1| putative integral membrane protein [Bordetella bronchiseptica RB50]
          Length = 370

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 93/243 (38%), Gaps = 6/243 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  ++    P + L  +F    
Sbjct: 121 ASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D +   +  A +     +    + ++L +G  +   P + +I ++ F  Y ++ ES   
Sbjct: 181 -DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAG 239

Query: 236 STI 238
              
Sbjct: 240 EDP 242


>gi|153827723|ref|ZP_01980390.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
 gi|149737800|gb|EDM52705.1| inner membrane protein YjgP [Vibrio cholerae MZO-2]
          Length = 199

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 73/196 (37%), Gaps = 2/196 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S       +  +    + ++ +   S      +++L I G  +P +  
Sbjct: 2   IIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADASDGEIPTSMILSIVGLNMPAMGL 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +        +   +E+ +++ TG     LI+  L+LA++ +     +   + 
Sbjct: 62  LMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RD 180
           P  +     L  +     +   L++  F R  D   +       N  L  +F+     RD
Sbjct: 122 PWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPRD 181

Query: 181 TQTHKIYYAQSGSIDL 196
           +    + ++ SG +  
Sbjct: 182 SILPSVMFSHSGDVKE 197


>gi|163750107|ref|ZP_02157350.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
 gi|161330164|gb|EDQ01146.1| hypothetical protein KT99_20606 [Shewanella benthica KT99]
          Length = 352

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 131/355 (36%), Gaps = 15/355 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  S  +  L +  ++ +I+ + ++ +V     ++        +LIP  
Sbjct: 1   MKILDLYIARTLVSSSALCLLILTGLSGIIKWVDQLRVVGRGNYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +   +EL+++ + G SR  +    +  A+ L + + +    
Sbjct: 61  IEIFFPMAVLLGALIGMGMLASGSELVVMQSAGLSRFQITLSAMKTAVPLMLMIMVLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P       +L A      +       ++ + D DL++ I +    N+L+ I + +   
Sbjct: 121 GAPAAERRANELQAFKVSGGSLIKSSRGIWAK-DGDLFVNIGEVENINSLRNITLYEFDS 179

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T    K  +A+ G    D   ++  D      +     ++ +    +         S + 
Sbjct: 180 TLTLVKTIHAERGVYSNDHWRLL--DVRQIDLTKDKVTLTDLTLYRWDSTLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  LL    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPESLSIQGLLG-YLDYLEANNQNSGRYELALWRKIMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  + +   +  GV  GF++ I      P  + ++Y     + ++   +I
Sbjct: 294 -----LRSVTMGARVLLGVIAGFTFYISSEIFGP--LTLVYGLPAFLGAVMPALI 341


>gi|121611823|ref|YP_999630.1| permease [Verminephrobacter eiseniae EF01-2]
 gi|121556463|gb|ABM60612.1| permease YjgP/YjgQ family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 369

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 129/375 (34%), Gaps = 26/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI---LQRINLVSSSTESLNILLKISGYLI 57
           MK+    I R    +        + + +   +   L+ + L       L+  L      I
Sbjct: 1   MKTIRRLIHREALSAVCFVTAGFLALFFFFDLIDELRWVGLAGREGYHLSHALLFVALGI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      ++ +L L     +  F  
Sbjct: 61  PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTF----SYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
            + + P    T +++ A A   LT     ++L+E           + +    PN  ++ +
Sbjct: 121 GDYLAPWTDRTAQRIKAHALGGLTSGATGAWLKERQDRHSF---AVNVRALTPNGGMRDV 177

Query: 174 FIVDSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTL-- 228
            I +  D         A  G    D  A  L      R +      D  +    +  L  
Sbjct: 178 RIFEFDDQGRLVTQTRATVGRFATDG-AWELAQVRRSRFARGDGQDDARVEHLDAPALRW 236

Query: 229 --QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             +  +   +  +LK +      L      + N   +  + Y  EF ++L   L  ++  
Sbjct: 237 PTRISADMVAASLLKPDRMATLDLF-QFIRHLNANGQSTQRYAIEFWRKLFYPLSCLVMV 295

Query: 287 LISIVAA--DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI----PILY 340
           ++++  A    R+          +   +S  F +   F Y  +    +P+       ++Y
Sbjct: 296 VLALPFAYLHLRSGGTAGYVFGGVMAGISF-FLLNNVFGYAGNLQNWSPWLTAAAPGLIY 354

Query: 341 LFLFCISSIFLLMIK 355
             L   +  +L++ +
Sbjct: 355 SLLSLAAFGWLVLRR 369


>gi|304413751|ref|ZP_07395195.1| inner membrane component LptG of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
 gi|304283842|gb|EFL92236.1| inner membrane component LptG of LptABCFG lipopolysaccharide
           transporter [Candidatus Regiella insecticola LSR1]
          Length = 358

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 129/357 (36%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+   +V ++ +I+ ++++  +   + S+      +   +P  +
Sbjct: 5   GVLDRYIGRNILHTILMTLFMLVSLSGIIKFIEQLRKLGEGSYSVLGAGIYTLLSVPKDI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R  +   V+  AI L +   +    +
Sbjct: 65  EIFFPMAALLGVLFGLGTLASRSELIVMQASGFTRTQIASAVMKTAIPLVLLTMVIGEWV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P           K          +  L+ R  ++ ++ I+    +NTL G+ I    ++
Sbjct: 125 APLSERIASDYRTKMIFGGAILTTQSGLWARDGEN-FLYINHILNDNTLSGVNIYHIDQE 183

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   + YA + +   +   +   D E         + S      + +         + +
Sbjct: 184 NRLLSVRYAATATFKDNVWQLSQVD-ESDLSDAKKINGSKTLTGEWKINLTPDKLGIVSV 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   +S L +        + E L  Y+     ++   L   +  L+++          
Sbjct: 243 DPDSLPISGLRDYIQYLKQNKQESL-RYQLIMWNKIFSPLSVAVMMLVALSFIFGPLRTV 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + I++   F V       +  + + P  I  L   L  +   + L++K++
Sbjct: 302 TMGVRVMVGIAVGFLFYVLNQIFGPVSLVYKMPPVIGALLPSLLFLLVSWYLLLKRR 358


>gi|33597808|ref|NP_885451.1| putative integral membrane protein [Bordetella parapertussis 12822]
 gi|33574237|emb|CAE38569.1| putative integral membrane protein [Bordetella parapertussis]
          Length = 370

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 93/243 (38%), Gaps = 6/243 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +   + +     S +    F        +  ++    P + L  +F    
Sbjct: 121 ASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D +   +  A +     +    + ++L +G  +   P + +I ++ F  Y ++ ES   
Sbjct: 181 -DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAG 239

Query: 236 STI 238
              
Sbjct: 240 EDP 242


>gi|225848004|ref|YP_002728167.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644087|gb|ACN99137.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 339

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 12/252 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL+   + F++       +    Q+L   N   S   +L   L++   +  + 
Sbjct: 1   MKILHRYILKNFFKKFIILIGLFSIVITSSQLLHLPNFAYS--MNLIDFLQLLVMIDISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L     F F +    V  S+  N E+  + + G S+  L+KPV     L +    I    
Sbjct: 59  LKYQILFGFFIAWLLVGVSIRENNEIYAVYSLGVSQKELLKPVFITTTLFTALALIVSIT 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +             ++   F ++++++ +       N+TL  I I    +
Sbjct: 119 LIPYANQERSKFLTLKVKNYILESIQPKNFSKINENISVYTESKE-NSTLHKIIIY---N 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ G    D+  ++L DG +H   P  K  S++K++ Y+   +++    I L
Sbjct: 175 KSNKYLITAKEGIFFQDK--VVLKDGYIH--IPSEKSFSVIKYEKYSFSLDTSYVKEIPL 230

Query: 241 KANDQNLSFLLN 252
           +  D   S L+N
Sbjct: 231 E--DYKTSQLIN 240


>gi|312879634|ref|ZP_07739434.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
 gi|310782925|gb|EFQ23323.1| permease YjgP/YjgQ family protein [Aminomonas paucivorans DSM
           12260]
          Length = 337

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 116/333 (34%), Gaps = 11/333 (3%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + +  +LV     SL +++++  Y +P V+ +  P    +        ++ N E++ +  
Sbjct: 9   LFKIADLVIQRGVSLGVVVRLFLYYLPGVVVLTIPMGSLLAALLGFGRLSANVEIVALKA 68

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G +   +++PV++ ++L+S+        + P        L     +  T    +E +F 
Sbjct: 69  AGVAFQRIVRPVIWASLLVSLGSMALNETLVPLAERAAVNLLRYEVMQETPPLFKERIFL 128

Query: 152 RLDDD----LYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG 206
           + + D      I I++  P +  +  I + +  + +  +I  A  G          + DG
Sbjct: 129 KEEKDGHLKRVIYINRMRPRSGKMADILVQEFEEDRLSRIIAAPRGEWVRGE--WWIEDG 186

Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPEL 264
           +V       K   +  F+   LQ         T  L     NL  + + +      +   
Sbjct: 187 KVFEVDAQGKVRLLFTFRKQGLQLHLNPKEVETQSLDPQQMNLFQMRD-SIRRLEEQGAD 245

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
               R   + RL      V+  L+   AA  R           + + +   + V   F  
Sbjct: 246 ATRLRVLLNLRLAVPWASVVLALVG-AAAGSRPQRSSSSVGLGLSVVIVFFYYVTLSFCQ 304

Query: 325 IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + +    P  +   +  L  +     L+ +  
Sbjct: 305 SLGEASYLPAVVAAWFPNLIFLVLGGFLVRRSN 337


>gi|296448501|ref|ZP_06890381.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
 gi|296254000|gb|EFH01147.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
          Length = 387

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 119/364 (32%), Gaps = 12/364 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ R I  S  +    +     +      +  ++ +     +L        PTV+
Sbjct: 3   RLLFTYLARRILFSMAVVQFALSVPVVLS---YLLYTLTPAAIRAGLLAPALIGTTPTVV 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + T      M+    + ++     S  ++ +P +  A  + +  +   N+I
Sbjct: 60  YITLPMAIGVATALEFARMSSEGMIAVLYALRLSVWSVCRPAIVCAGAMVLIGYGLANLI 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSR- 179
            P     ++ +    +  L    LE   F+  D+ L  + + ++   +    +F+     
Sbjct: 120 APHYAGALQDVINVVRNTLNHRMLEPARFYTFDNGLKTLYLERWETPDIAVNLFVRQLSL 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                +   A           +I  L+ G +  +   S ++ I  F  Y +      S +
Sbjct: 180 AKNQEETITAARAEFRRTPSGVILALSHGSIQTRPFDSTEVRIAGFDEYAMALPMQGSES 239

Query: 238 IVLKA----NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  ++     +      L  N +       L   + +E  KR           L+++   
Sbjct: 240 LPARSWRGVYEMGPLEFLG-NWSVARLDRRLSGEWAAEAAKRFGMPALSFAHTLLAMALV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                V  R+     F+ +++     +    +   +  +P Y  +L   +    +    +
Sbjct: 299 LTFGNVTGRRGASSSFVMIAVPATHIFFLVALETLLRADPRYAILLAALICVEIATAATL 358

Query: 354 IKKK 357
           I ++
Sbjct: 359 ISRR 362


>gi|15806095|ref|NP_294799.1| hypothetical protein DR_1075 [Deinococcus radiodurans R1]
 gi|6458807|gb|AAF10648.1|AE001958_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 394

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 123/388 (31%), Gaps = 42/388 (10%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+ R +    L   L    I            +  S   ++++ +  GY +P  L
Sbjct: 15  TRLTRYVTRELLPPLLAGTLLFTAILSFGYFFISSQWL--SGVPVSLIARWIGYQLPDTL 72

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T      MN   EL+ +   G     + +P   + +L++         +
Sbjct: 73  VKVLPMAVVLMTVVAFGRMNTERELVAVQAGGIGLGRVTRPAAVVGLLVTALSVWLSLWV 132

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIV--DS 178
            P+     + L   A      S L       L   L + +  Y+     +QG+ +   D 
Sbjct: 133 APRANVETRGLYWDALTGAGLSQLV-GKTVDLGQGLTLAMQGYDAGARQMQGVRVEKWDK 191

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-------PISKDISIMKFKS------ 225
            + +   + +A +G  + ++  + L   +V+R             D     F+       
Sbjct: 192 DNFRQGMVVFADAGKFEGNQ--LSLTGYQVYRVDYAAAAALSGVADNDPAAFREAVQKVF 249

Query: 226 ------------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET----YR 269
                         L T  +   T+   A+         P        P + ++     R
Sbjct: 250 PLVQVPEDRNAALNLDTGLSRKQTLAQYADAIGADAEGWPELITKLTAPGVPQSERDAAR 309

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
              +++L      ++  L ++  A +      R     + ++L I+   +  FS  +   
Sbjct: 310 VNLNRKLALPFANLVLVLAALPFALRFG----RTLGVSLGVALVIAVAYYLLFSVGLTLA 365

Query: 330 EQNPYYIPI-LYLFLFCISSIFLLMIKK 356
              P    + ++L     +   L ++++
Sbjct: 366 GLLPGLPELGVWLANIVFALGGLWLLRR 393


>gi|170725440|ref|YP_001759466.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
 gi|169810787|gb|ACA85371.1| permease YjgP/YjgQ family protein [Shewanella woodyi ATCC 51908]
          Length = 352

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 127/353 (35%), Gaps = 6/353 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  +  L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MRILDFYIARTLVSTSALCLLILTGLSGIIKWVDQLRVVGRGSYTMLDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ + G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITLSAMKTAVPLMLIIMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A      +       ++ + D DL++ I +    N L+ I +   + 
Sbjct: 121 GAPAAEQKAYELQATKISGGSLIKSSRGIWAK-DGDLFVNIGEVEDINNLRNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    +  +A+ G    D   ++  D      +     ++ +    +         S + 
Sbjct: 180 DLALTRTIHAERGVFSKDHWRLL--DVRQTDLTDERVTLTDLTLYRWESTLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     ++  Q +   +  L+++         
Sbjct: 238 VKPESLSIQGLIG-YLDYLEVNNQDASRYELALWRKFMQPVTVAVMMLVALSFVFGPLRT 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFL 351
                   + +    SF +       +  +   P YI  ++   +F + +I+ 
Sbjct: 297 VTMGARVLLGVIAGFSFYISSEIFGPLTLVYGLPAYIGAMMPALIFGVGAIYF 349


>gi|77165378|ref|YP_343903.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|254434004|ref|ZP_05047512.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
 gi|76883692|gb|ABA58373.1| permease YjgP/YjgQ [Nitrosococcus oceani ATCC 19707]
 gi|207090337|gb|EDZ67608.1| putative permease, YjgP/YjgQ family [Nitrosococcus oceani AFC27]
          Length = 354

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 121/358 (33%), Gaps = 4/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    L+    ++ +   +Q +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYIAKAVISYTLLVLFILIALYTFLQFVTELEDVGEGDYGVMGALRYTTYSIPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  +   +EL+ +   G S   +    L   ++  I   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIVTVLMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +    +L + A+         +  F+  + + +  + +  PN   + I I +  D
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGGQG-FWSRNGNNFNHVGRVLPNGQYEYIEIFEFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +I   Q+      +    L D      S        +    +           +++
Sbjct: 180 QRRLRIVT-QAARAIYHKDGWHLYDVTQRLISTKGITTRRLDEALWESGLNPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L            +  E YR  F  ++      +I   ++I          
Sbjct: 239 DPQQLSAWGLYR-YIGYLQKSKQAAEQYRQAFWSKIVAPFSTLIMMFLAIPFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
              +   +   + I F +F      +  +   P ++   +  L C+ ++ ++M+++ Y
Sbjct: 298 SVGQRILVGALVGIGFFLFNRLFNQLGLVFDLPPWLGAAFPSLLCL-ALGVVMLRRIY 354


>gi|319896845|ref|YP_004135040.1| inner membrane protein [Haemophilus influenzae F3031]
 gi|317432349|emb|CBY80704.1| conserved inner membrane protein [Haemophilus influenzae F3031]
          Length = 358

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 135/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   MNTLDRYIGKSILGAIFATLLTLVGLSAIIKFVEQFRSVGKGTYDIWQAVAFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A  L +   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGIAVMKTASPLVLLTMMIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFEQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|268592782|ref|ZP_06127003.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
 gi|291311563|gb|EFE52016.1| membrane protein, YjgP/YjgQ family [Providencia rettgeri DSM 1131]
          Length = 358

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 132/358 (36%), Gaps = 5/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S L++   +V +A +I+ ++++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGRTILNSILVTLFLLVSLAGIIKFVEQLRKVGDGDYTALSAGVFTLLTVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  A+ L I        I
Sbjct: 63  DIFFPMAALLGALMGLGALASRSELVVMQASGFTRLQIALSVMKTAVPLVIVAMFIGEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+  +  +    +E ++ +  +D +I I + N   ++Q + I    D 
Sbjct: 123 APAGEQWARNYRAEKIVGNSLVVTDEGMWAKDAND-FIHIQRINNATSIQDVSIYRFDDQ 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
           +    + +A +G  D   Q  +L+  +    S   K   S      +           + 
Sbjct: 182 RKLKSVMFAANGEYDSTNQLWVLSQVDESILSSEKKITGSQRLTVDWKTNLTPEKLGIVS 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR-AL 298
           L A+  ++  L     +      ++   Y     K++   L   +  L+++         
Sbjct: 242 LNADSLSIRGLY-QYVSYLKESGQVAAVYELSMWKKILAPLSAAVMMLMAVSFIFGPLRT 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           V    ++    +   + + +  GF          P     L   LF I SI LL+ +K
Sbjct: 301 VPMGVRVISGIVGGFLFYVLNQGFGNWSLVYSVPPIIAAALPSVLFLIVSITLLVKRK 358


>gi|87306756|ref|ZP_01088903.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
           3645]
 gi|87290935|gb|EAQ82822.1| hypothetical protein DSM3645_10492 [Blastopirellula marina DSM
           3645]
          Length = 380

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 125/364 (34%), Gaps = 35/364 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++ + Y++  + + F +  L  V +  V      +N         +I+L +  Y +P +
Sbjct: 1   MRTIQTYVVWEVFKIFFLCLLATVLLMVVG---GGVNEGLKKGLPPSIILGMMPYFVPEM 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P C       V   M+ + E++ + + G + I +I PVL     LS   F   ++
Sbjct: 58  LRFTIPGCLLFSICTVFGRMSASNEIVALKSAGINPIEIIWPVLVATYALSFVTFGLYDV 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
                R  + ++  ++     +S L  +  F        +++   +    ++    V + 
Sbjct: 118 CAGWSRPNMHRIIIQSLDDTAYSMLRTQKSFS--MQGFSVRVKGVDDRRLIEPFITVQTP 175

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN-----------DGE-----------VHRKSPISKD 217
           +        A+   ++ + +   L            DG            + +   + +D
Sbjct: 176 NGGPEFTLTAEEAELESNPETGALQVVCRNSFMEYGDGTNFSQVEPFVHQITQLGTLDQD 235

Query: 218 ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE----TYRSEFH 273
           ++     + TL+   A  +       D   +  +  +P    Y  E  +      ++E  
Sbjct: 236 LNSASPAALTLRHIPAQIAREAKLLEDTINALHIGGDPEAIAYAAEGHQKRLWRLQAERQ 295

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +RL+  L    F  + I  A  R        +   F+      GV++        + ++ 
Sbjct: 296 RRLSNGLGCFCFACVGIPVAMWRRTS---DNVTTFFLCFLPILGVYYPLLVTGETMARDG 352

Query: 334 YYIP 337
              P
Sbjct: 353 VLAP 356


>gi|315634607|ref|ZP_07889891.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
           33393]
 gi|315476555|gb|EFU67303.1| YjgP/YjgQ family membrane protein [Aggregatibacter segnis ATCC
           33393]
          Length = 355

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 134/361 (37%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   +   +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLFMLVGLSAIIKFVEQFRSVGKGTYDILQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SRI +   V+   I L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRIRIGIAVMKTTIPLVLLTMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   ++  ++ +  ++ ++ +   + +  L  I+I   + 
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNN-FVYVRSISDDVELNDIYIYTFNE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  K+ +A   S +  +  +   +    +   +   I+ +  + +             
Sbjct: 180 QRQLEKMKHANQASFNNGKWTLRQVNESRIQPDEVV-TINRLN-EDWETNLTPDKLGVAS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L N          +    +   + ++L Q +   +  ++++        +
Sbjct: 238 LRPTSLSISGLSN-YIAFLKETGQDSRNFELTYWRKLLQPVSVGVMMMLALSFIFGP--L 294

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +S  F  +     F          P    ++   LF + + +LL  ++
Sbjct: 295 RSVTAGARILIGISFGFLFYVVNELFGKFSLVYNTTPLIGALMPSVLFLLITWWLLARRR 354

Query: 357 K 357
            
Sbjct: 355 N 355


>gi|71277954|ref|YP_267493.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71143694|gb|AAZ24167.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 355

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 130/356 (36%), Gaps = 3/356 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R I  +  ++    V ++ +I+ ++++  +      L        Y +P  
Sbjct: 1   MRIIDFYIGRVIASTTFITLAVFVSVSGIIKFVEQMRAIGRGNYDLAHAALYVLYAVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++   G SR+ +IK V+  A+LL I        
Sbjct: 61  VEVFFPMSALIGGLIGIGMLASNSELIVMQAAGLSRLDIIKSVMKTAVLLIIVSMAIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +++ A+A    +    +  ++ + D D ++ I +      L+ + I    D
Sbjct: 121 LAPSGEAKAREIRAQAISGGSLIAAKNGVWAK-DGDYFVNIGEVLDRGQLKKVQIYGFND 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 + +   +I  D+   +L D E    +           K +           + +
Sbjct: 180 ELKIDSWLSAKSAIYQDKS-WLLTDVEEFSLTENEIITKSHSQKIWNSSLTPKKLGVVTV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +L  L++   +      +    Y+  F +++ Q L   +  L+++          
Sbjct: 239 TPESLSLRGLID-YLDYLEANEQDPSRYKLAFWRKIMQPLTVAVMLLVALSFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                  + +   I F +       +  + Q P  +  +   LF +   +  + KK
Sbjct: 298 SMGARIMMGVFTGILFFISNEVLGSLSLVYQLPPILGAMIPSLFFVGIAWYFIGKK 353


>gi|258591110|emb|CBE67405.1| putative Permease YjgP/YjgQ [NC10 bacterium 'Dutch sediment']
          Length = 362

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 129/364 (35%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ +   R    S +  + ++ ++ +  R++       S  ++++   Y +P  
Sbjct: 6   MRILDRYLAKEFLRICAFSLVIFLALSVIVDLFDRLSRFLD--VSGVVVIQYYIYRLPWF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L  M R+ ELL +     S   ++ P L L +++S    I    
Sbjct: 64  GFQVMPVAVLLAALFSLGKMARHNELLAMKMGHLSIFRIVVPPLVLGLVVSFAALILGES 123

Query: 121 IEPKCR-STIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYN-PNNTLQGIFIVD 177
           I P+     +     K Q    F   + N +++R   + ++ IS     + +++G+ + +
Sbjct: 124 IVPRMNERALDAYRVKVQKVSPFQRTKNNDIWYRAKGNRFLHISLLEAASGSIRGLTVFE 183

Query: 178 -SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            S D +  +   A+       +    L +GE+ R  P      +  F   TL  E     
Sbjct: 184 LSPDFRLARRIDAKEARWQDGQ--WRLQNGEISRTKPD-GTFRVDPFTHLTLYLEEKPED 240

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              V++  ++  S  L                Y+ +   + +     ++   I I  A +
Sbjct: 241 LAHVVREAEEMTSSELREYIERLAKAGVSSVRYQVDLAAKGSTAFTNLVMAFIGIAFALR 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLL 352
                +R  +      +  +       S+ I     +   P     L   LF  + +  +
Sbjct: 301 TG---KRGVMAWTGACVVAAVCYSILNSFSISLGRGDVLPPLVAAWLPNVLFTTAGLASV 357

Query: 353 MIKK 356
           +  K
Sbjct: 358 LRIK 361


>gi|88800548|ref|ZP_01116110.1| predicted Permease [Reinekea sp. MED297]
 gi|88776693|gb|EAR07906.1| predicted Permease [Reinekea sp. MED297]
          Length = 350

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 134/363 (36%), Gaps = 20/363 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I + F+   L ++ +    +I   +  + +   S N L  + G+ +P +L 
Sbjct: 2   TLYRYLYGQIMKPFVFMTLVLLILLIATEISDTLTKILTGQFSDNALWVVIGFQVPILLQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL-LSIFLFISENII 121
            + P  F +     L  +++++E  I+   G S   L++ +L  A L   + +    + I
Sbjct: 62  EILPAAFFLACLTTLHRLSQDSERAILHAIGISDGDLLRFLLVFAALPAMLLVLALNHYI 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIK-ISKYNPNNTLQGIFIVDSR 179
            PK +  ++    +         ++ N F+ +   +         +   +L+ +F   ++
Sbjct: 122 TPKAQENLELYVTEQLNRPITDIIDANSFYNIGAINATFYAARNNSQTQSLEDVF-TIAK 180

Query: 180 DTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSS 236
              ++ +  A+        + Q     +GE  + S   S+ +   +F    L+ E   ++
Sbjct: 181 SQSSYTVTAAKEVRTQGAENAQYFQFFEGEQTQFSFDESEPLQTQRFGMMQLRIEEDGNA 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +   + N      L      + + +  L+         R    L+  +F + ++V     
Sbjct: 241 SPWQRRNALTSFEL--AKSEDRHDQLTLI--------SRFATSLYLPLFCIWAVV---LT 287

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +  K+  + + + +     + +  +   + ++   I     + F +  +  L+  +
Sbjct: 288 RFKPRSAKVGAMALGIVLYILTNFAYRTLHGAVGRSDLSILFQPWWFFVVLGVIALITLR 347

Query: 357 KYT 359
              
Sbjct: 348 GRA 350


>gi|256027206|ref|ZP_05441040.1| hypothetical protein PrD11_04301 [Fusobacterium sp. D11]
 gi|289765183|ref|ZP_06524561.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716738|gb|EFD80750.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 363

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 127/365 (34%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P +
Sbjct: 2   IKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGI---- 173
           I  K  + I      +   +L     +EN  F    D     + + N      + I    
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEVVK 181

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           F  +    +   I  A+S   D +    I ++  ++      + I+  ++KS   + + +
Sbjct: 182 FETEISKPKE--IITAKSAKFDTEENKWIFSNVNIYNVD-TKETITKTEYKSKLYKDDPS 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           N      +         L           E    Y SE  KR +      I   I +   
Sbjct: 239 NFIRASAEDPRMLTIKELKKTIKEQKSIGEDTRIYLSELAKRYSFPFASFIVAFIGLSV- 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFL 351
                VR  +    + I +   +G +   S     +  N    P +  ++       I +
Sbjct: 298 -SSKYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLIIGI 355

Query: 352 LMIKK 356
             + +
Sbjct: 356 YFMNR 360


>gi|262341159|ref|YP_003284014.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272496|gb|ACY40404.1| putative YjgP/YjgQ family permease [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 359

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 138/365 (37%), Gaps = 25/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  + YI+R +  +F+   + +  ++ VI I QR++ + ++  S+   L+    Y    
Sbjct: 1   MKILDRYIIRNLLITFIFITVSLQLLSVVIDISQRMHRLENNQGSIKKALIFYYPYWSIW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +    +P    +      + +  N+E+  I ++G S   LI P L  AI++     +   
Sbjct: 61  LANTFSPISVFLSVIFFTSKLENNSEITAILSSGISLNRLIVPYLISAIMIGTVSLLINY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              P       Q   +  L+  +    E    +  ++  + YI I  ++    +   F+ 
Sbjct: 121 YFLPMANKKKNQFHYQYLLSSRYKNKYEKNQTISTQISKNEYIFIRNFSRKKNIGKEFVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAI-ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              + +               ++ I +L+D   +R++ I K+        Y ++  S   
Sbjct: 181 QKFNGKKLIYILKSKNIFGYKKKKIYVLSD---YRETTIKKNYDFFIKGDYKIKKFSFTP 237

Query: 236 STIVLKANDQNLSFLLN----PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             ++    ++ ++  +N        +   +   +  + +E+++R +      IF ++   
Sbjct: 238 EELL---PEEYIAETMNIYELKKFIDIEKKNRNVNIHLNEYYQRTSLPFSTFIFTILGFS 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP---ILYLFLFCISS 348
            + K++            I L I   VF+ F   I KI      IP    ++L    +  
Sbjct: 295 LSSKKSET-------GYNIILGIVLAVFYIFFMEITKIYSTKDTIPSYLSVWLPNVLLGI 347

Query: 349 IFLLM 353
           I L  
Sbjct: 348 IALFF 352


>gi|28899416|ref|NP_799021.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839669|ref|ZP_01992336.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
 gi|260363480|ref|ZP_05776316.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|260879349|ref|ZP_05891704.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|260895692|ref|ZP_05904188.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|260900264|ref|ZP_05908659.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|28807652|dbj|BAC60905.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746812|gb|EDM57800.1| permease YjgP/YjgQ family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087431|gb|EFO37126.1| conserved inner membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308093069|gb|EFO42764.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034]
 gi|308107540|gb|EFO45080.1| conserved inner membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308112550|gb|EFO50090.1| conserved inner membrane protein [Vibrio parahaemolyticus K5030]
 gi|328471447|gb|EGF42342.1| lipopolysaccharide ABC transporter permease [Vibrio
           parahaemolyticus 10329]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 130/358 (36%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L + A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRSFALSGGSIVSVRAGVWARDAND-FIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVL 240
              K+ +A+      D    ++ D ++      +      M    +         + + +
Sbjct: 182 NLEKVIFAEEVDYQQDNN-WLMRDVQITNMQDENVISKQEMDQMEWHTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +          +    Y   F ++LTQ L   +  L++   V    R++
Sbjct: 241 KPEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               + +  +    +      F+G   +++ I   P +  +     F   ++ LL  K
Sbjct: 300 TMGARVLSGVVAGFTFYISSEFFGPLTLVYGIP--PIFGALAPSLAFLAIAVALLRRK 355


>gi|254282266|ref|ZP_04957234.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
 gi|219678469|gb|EED34818.1| permease YjgP/YjgQ family protein [gamma proteobacterium NOR51-B]
          Length = 353

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 115/358 (32%), Gaps = 7/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R I          +V +  +  I+     + S       ++   G  +P  
Sbjct: 1   MGKIDRYIGRAILGGTFAVLGVLVGLDALSTIVDEAEDL-SDRYGFIDMMSYVGLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L  +  ++EL+++ + G S   L   V+  A+L ++  F+  + 
Sbjct: 60  IHEFMPFAALIGALVGLGRLAGSSELVVVRSAGVSIGQLAISVMKPALLAAVVGFVVGDF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           I P          A AQ + +        + R D   +I +S         G+       
Sbjct: 120 IAPSSEQLAITQRALAQRSESTVSARHGSWNR-DGGTFIHVSAVQRGGVAYGLSLFSFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    +   A+ G+   D    +L +  + +       +S      +  Q         V
Sbjct: 179 DKHLVRSLNAERGTYRGDH--WLLEEVVLTQLESEKTTVSQYLTWRWNTQITPDLLVLEV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           ++     +  L  P       +          F +++TQ L      L+++         
Sbjct: 237 VEPESLPVFKL-WPWAKFLEQQGLTATDIELAFWRKVTQPLAIAGLVLVAMSFIFGPLRE 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     + + + F +   F      +   P  +  +   LFC  +  + ++ ++
Sbjct: 296 GSMGARIFAGVIVGVMFRISQDFFGPASVLFGLPPVLAAITPILFCWLA-GIWLLNRR 352


>gi|160887737|ref|ZP_02068740.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|317478670|ref|ZP_07937825.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
 gi|156862768|gb|EDO56199.1| hypothetical protein BACUNI_00139 [Bacteroides uniformis ATCC 8492]
 gi|316905181|gb|EFV26980.1| hypothetical protein HMPREF1007_00941 [Bacteroides sp. 4_1_36]
          Length = 633

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 108/298 (36%), Gaps = 29/298 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++L+     F+ +    +FI  +  + + ++ +      + +L +   Y   ++
Sbjct: 4   IKKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    +       +     ELL +   G S + +++P++     +    F  +N+
Sbjct: 64  VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK ++ +  L    +       + E +F+   D   + +   N     L  + I +  
Sbjct: 124 IGPKAQTKLWTLLISMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSIDLDRQ----AIILNDGEV---------------HRKSPISKDIS 219
              +  +I  + SG +++        + L  GE                +R+    +  +
Sbjct: 184 KGFENAQIIKSDSGRLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFREKHA 243

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSF-------LLNPNPNNPNYRPELLETYRS 270
           I++F S       A   +    + D  +         L N +     Y+  +  TY+ 
Sbjct: 244 IIEFNS-DFNMVDAGIMSNQSNSKDMRMLQADIDSMKLQNDSVGRGYYKEAMAGTYKV 300


>gi|240079726|ref|ZP_04724269.1| hypothetical protein NgonF_00194 [Neisseria gonorrhoeae FA19]
 gi|268595872|ref|ZP_06130039.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|293399674|ref|ZP_06643826.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
 gi|268549660|gb|EEZ44679.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|291609925|gb|EFF39048.1| hypothetical protein NGNG_01869 [Neisseria gonorrhoeae F62]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 122/365 (33%), Gaps = 16/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     L+ + + +  I +    P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVRGMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +   A S  ++ D     L +           + S    +++ +         ++
Sbjct: 179 KNELAEAVEADSAVLNSDGS-WQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNLMDVLL 237

Query: 240 LKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++       
Sbjct: 238 VKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFAF--TP 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              R       +F  + +          F +        P+    L    F + +++L+ 
Sbjct: 292 QTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLAVWLIR 351

Query: 354 IKKKY 358
            ++K 
Sbjct: 352 KQEKR 356


>gi|260221416|emb|CBA29957.1| hypothetical protein Csp_A14750 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 384

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 135/373 (36%), Gaps = 21/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQI---LQRINLVSSSTESLNILLKISGYLI 57
           MK+    +   +  +  +  L  + + +   +   LQ ++ ++SS   +   L     +I
Sbjct: 17  MKTLRKLLYGEVITAVTLVTLGFMALFFFFDVVEELQSVSRIASSGYQVPQALIYVALMI 76

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  +  + P    + T  V+  + R++E  I+  +G      ++ +L L +   +F F  
Sbjct: 77  PAHVYELFPITVLIGTIFVMARLARSSEFTILRTSGLGPWRALRTLLALGLGFVLFTFAV 136

Query: 118 ENIIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
            + + P    T +    +   K  +  T ++L+E    +      + +   + + TL+ +
Sbjct: 137 GDYVAPLADKTAQLLKSRFQGKISVGKTGAWLKE---RQAYGSYSVNVGALSSDATLKDV 193

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS---IMKFKSYT--L 228
            + +  +                D ++ +L  G     +     +S    + F+S+    
Sbjct: 194 RVYEFDNQGKVVSLTEAKAGTFGDDESWMLTQGVRTEFTSGPDQVSKVDRVAFESFRWPT 253

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           Q  +   +  VL+        L      + N   +  + Y  +F K++   L  ++  ++
Sbjct: 254 QISAEMVAAAVLRPERMGTIDLF-QYIRHLNANGQSAQKYEIQFWKKVFYPLSCLVMVVL 312

Query: 289 SIVAADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--F 344
           S+  A    R+          +   +S    +    + + +     P+    L   +  F
Sbjct: 313 SLPFAYLHFRSGSIAGYTFGGVMAGISFVL-LNNVLNDLGNLQGWQPWITAALPGLIYSF 371

Query: 345 CISSIFLLMIKKK 357
              + F  ++ ++
Sbjct: 372 FSLAAFTWLVLRR 384


>gi|16125408|ref|NP_419972.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
 gi|221234151|ref|YP_002516587.1| hypothetical protein CCNA_01214 [Caulobacter crescentus NA1000]
 gi|13422474|gb|AAK23140.1| hypothetical protein CC_1156 [Caulobacter crescentus CB15]
 gi|220963323|gb|ACL94679.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 406

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 121/354 (34%), Gaps = 17/354 (4%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
                  V    + +IL+ ++++S S+     + +++  L+P  L +  P  F +    V
Sbjct: 27  AACLGVTVIALLLERILRLLDVLSQSSARFGYVAQLAANLVPHYLGLALPVAFFVALFIV 86

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           +  ++  +E+  +  +G S   +  P + + +LLS+F  I    ++P  R   + +   A
Sbjct: 87  IVKLSDGSEIDALLASGQSLERIAAPFVAVGVLLSVFSIIVFGYMQPYSRYAYRAVMHAA 146

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
             A     L    F      L    S       L  +FI         +I  A S  + +
Sbjct: 147 VNAGWNGRLAGGAFIDDKGSLLTADSADIAGQRLTRVFIRRLDAKGQEEIITAASADLKM 206

Query: 197 DRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS----TIVLKANDQNLS 248
           D       + L DG              + F S T QT  + ++           +  + 
Sbjct: 207 DPDGKTITMDLRDGRRI-AHDAYGTYRNLAFTSLTTQTPLSAAAVLLRDRGGDERELTMG 265

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPI 308
            L     +      +   T  SEF+ RL +  F      + ++A       ++  +   +
Sbjct: 266 ELRREAKSPDPVVSK--GTLLSEFYGRLARAAF---LPFLPLLAFPLGLASKRGNRAPGL 320

Query: 309 FISLSISFGV---FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
            ++  +             +    + + +    +   LF   S++L +  +   
Sbjct: 321 IMAGLLLLAFQHSLLLGQGMAKAGKADAFAAIWIPFTLFAALSVWLFVGSRTRP 374


>gi|153834586|ref|ZP_01987253.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
 gi|148869029|gb|EDL68074.1| permease YjgP/YjgQ family protein [Vibrio harveyi HY01]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 131/357 (36%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRAFALSGGSIVSVRAGVWARDAND-FIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 KLDKVIFAEEVDYQQDNNWLMRYVQVTDMENENVITKRDVEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             + +LS L +          +    Y   F ++L+Q L   +  L++   V    R++ 
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    +      F+G   +++ I   P +  +    +F   ++ LL  K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLTLVYGIP--PVFGALAPSLVFLAIAVSLLRRK 355


>gi|194097860|ref|YP_002000905.1| hypothetical protein NGK_0280 [Neisseria gonorrhoeae NCCP11945]
 gi|239998341|ref|ZP_04718265.1| hypothetical protein Ngon3_02528 [Neisseria gonorrhoeae 35/02]
 gi|240016934|ref|ZP_04723474.1| hypothetical protein NgonFA_07156 [Neisseria gonorrhoeae FA6140]
 gi|240117143|ref|ZP_04731205.1| hypothetical protein NgonPID_01565 [Neisseria gonorrhoeae PID1]
 gi|240127074|ref|ZP_04739735.1| hypothetical protein NgonS_00193 [Neisseria gonorrhoeae SK-93-1035]
 gi|268594203|ref|ZP_06128370.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268602831|ref|ZP_06136998.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268685429|ref|ZP_06152291.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|193933150|gb|ACF28974.1| Conserved hypothetical integral membrane protein [Neisseria
           gonorrhoeae NCCP11945]
 gi|268547592|gb|EEZ43010.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268586962|gb|EEZ51638.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268625713|gb|EEZ58113.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|317163630|gb|ADV07171.1| hypothetical protein NGTW08_0197 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 356

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 122/372 (32%), Gaps = 28/372 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVCALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A     K     T  +L+E        +  I +    P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGHTGLWLKEK-------NSIINVRGMLPDHTLLGIKI 173

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D     +   A S  ++ D     L +           + S    +++ +      
Sbjct: 174 WARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNL 232

Query: 235 SSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +++K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++  
Sbjct: 233 MDVLLVKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFA 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R       +F  + +          F +        P+    L    F + +
Sbjct: 289 F--TPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLA 346

Query: 349 IFLLMIKKKYTK 360
           +   +I+K+  +
Sbjct: 347 V--WLIRKQEKR 356


>gi|209694121|ref|YP_002262049.1| putative permease [Aliivibrio salmonicida LFI1238]
 gi|208008072|emb|CAQ78213.1| putative permease [Aliivibrio salmonicida LFI1238]
          Length = 358

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 139/359 (38%), Gaps = 9/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  + +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSSLCLVTLVGLSSIIKYVEQLRKVGKGTYDLLDALYFVILSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGYSKLDIGISVLKTAIPLMLMVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+ +   + L A +      + +   ++ +  +D +I +S+ +    L G+ +    ++
Sbjct: 123 APQAQKMARDLRAFSISGGNIASMRTGVWAKDGND-FIYLSRVDDQAKLYGVTLWQFDKE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
            +   I +A+    +   +   L D  +      +  I+  K  S +  T       + +
Sbjct: 182 RKLDDIVFAKKAEYESKEEGWKLIDVSITDMKDEN-IITEKKLDSLSWSTTLTPDKLAVV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
            +K  +Q+L+ L +   N           Y   F ++  Q +   +  L++   V    R
Sbjct: 241 SVKPEEQSLTGLYD-YVNYLKDSELDASRYELAFWRKALQPISVAVMMLLALSFVFGPLR 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++    + +  +    S        F  +      +P +  +   F+F + ++ LL  K
Sbjct: 300 SVTMGARILSGVIAGFSFYISNEV-FGPMTLVYNIHPIFGALGPSFVFLLITLGLLNRK 357


>gi|149200566|ref|ZP_01877574.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
           HTCC2155]
 gi|149136338|gb|EDM24783.1| putative permease, YjgP/YjgQ family protein [Lentisphaera araneosa
           HTCC2155]
          Length = 329

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 110/328 (33%), Gaps = 33/328 (10%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
            L+P +L    P    +  T V + M+   E+  +  +G S   ++ P + LA++ S  L
Sbjct: 1   MLLPKILAYAIPIASLVSVTLVFSRMSAENEITAMRASGISLWQIVNPAILLALVSSACL 60

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           F       P   +T K +     L+   ++L       L   L ++I +   + TL+ + 
Sbjct: 61  FYLNMFAVPHLEATRKSMMKGELLSNPSTFLRGGTTIDLGK-LSVEIGEKKEDGTLKDLR 119

Query: 175 I--VDSRDTQTHKIYYAQSGSIDLDR---------QAIILNDGEVHRKSPISKDISI--- 220
           +  VD           AQSG I               IIL++     K+   ++ S+   
Sbjct: 120 VIEVDKATDIVSNQLLAQSGKIINTTENSFTIEFIDVIILDNNWEFLKNDKGENKSLSGV 179

Query: 221 ---------MKFKSYT---LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                      +  YT   L + +       L   +      +  N              
Sbjct: 180 KVTRLPNANTTYTFYTNDELNSGNLRKRAKYLNIKEMIARLAVLKNKEQTKTVRREHTDL 239

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
               +K L     P+ F L+++         R    I  +   + +    ++    I   
Sbjct: 240 LYNLNKNLALSFSPLAFLLMALPFGL--RSSRSETSIGLLISLIVMM--TYYATILITGA 295

Query: 329 IEQNPYYIP--ILYLFLFCISSIFLLMI 354
            +++    P  +++L      S+ L MI
Sbjct: 296 FDKHTAMHPEILVWLPNIIFQSLGLGMI 323


>gi|55980366|ref|YP_143663.1| hypothetical protein TTHA0397 [Thermus thermophilus HB8]
 gi|55771779|dbj|BAD70220.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 347

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 119/357 (33%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     F    L IV +     + + +  + +       LL+   +  P  
Sbjct: 1   MKTLDRYLLRETLPLFGGGLLVIVLLFLGGAVYEVLAPLVAKGADPYTLLRYLLFRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  + EL  +   G  R  L+ P L L   +++  F+    
Sbjct: 61  LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  +  + L  +  L    + L     F+      + + K        G   V SR+
Sbjct: 121 LVPQALAKGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKV--EGEAIGALRVLSRE 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ GS       + + +G            ++ +F+   L  +         
Sbjct: 179 E----VLLAERGSFRGG--VLHVEEGTRITYEGSRPR-TLARFQRGELVLKDLTFDPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L+ L                   + +++R  + L   +F L ++  A       
Sbjct: 232 PANRMTLAEL-RKEVQRLRQMGVRAGLEATTYYRRFAEPLAAPVFALFAVGLAFYLLGGS 290

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   +  + +     +  +     +  +   +P+        L+    +FL +  ++
Sbjct: 291 RSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFLGGRR 347


>gi|91228858|ref|ZP_01262763.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269966357|ref|ZP_06180443.1| Predicted permease [Vibrio alginolyticus 40B]
 gi|91187596|gb|EAS73923.1| putative permease [Vibrio alginolyticus 12G01]
 gi|269829034|gb|EEZ83282.1| Predicted permease [Vibrio alginolyticus 40B]
          Length = 356

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 131/357 (36%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      +P  +
Sbjct: 3   KILDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGVYDLTHALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L I +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIVVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRAFAISGGSIVSVRSGVWARDAND-FIFIGKVEDDKLYALNMWRFDDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 NLQKVIFAEEVDYQQDNNWLMRYVQITDMENENVISKQDIEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             + +LS L +          +    Y   F ++LTQ L   +  L++   V    R++ 
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    +      F+G   +++ I  +P +  +    +F   +I LL  K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLSLVYGI--SPVFGALAPSLVFLAIAIALLRRK 355


>gi|332991779|gb|AEF01834.1| lipopolysaccharide ABC transporter permease [Alteromonas sp. SN2]
          Length = 353

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 137/354 (38%), Gaps = 8/354 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  V      + +        +P  L
Sbjct: 3   KILDLYIARTLLGTVTVTLSVLIGLSALIKFVEQLRKVGEGDYDMMVAFLYVVLSLPRDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +  A ++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIIVSTMKSATIMILLVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P   S  K++  +A    +    E+ ++ +  +  ++ I +    ++L+ I I D + D
Sbjct: 123 TPFSESKAKEIRTEAISGGSLFSSEQLVWAKDGE-HFVSIGEVLSRDSLKDINIFDFNDD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I YA+SG  + D     L+D +V R S  +  +   K   +           + +
Sbjct: 182 LSLESITYAKSG--NFDGSEWRLSDVDVTRFSETAVTLDNEKSMQWNSTLTPDKLGIVAV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K    ++S LL+          +    Y     +++ Q +   +  L++   +    R++
Sbjct: 240 KPEALSISGLLD-YVGYLANNGQDPSRYELALWRKILQPVSVGVMLLMALSFIFGPLRSV 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               + I  +       F +   F  +    +  P+   +L   LF   +  +L
Sbjct: 299 TMGARVIMGVLTGFGF-FILNEVFGPLSLVYQIPPFLGALLPSLLFAAIAAIML 351


>gi|163756243|ref|ZP_02163358.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
 gi|161323855|gb|EDP95189.1| hypothetical protein KAOT1_06887 [Kordia algicida OT-1]
          Length = 359

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 139/374 (37%), Gaps = 32/374 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F +  L  V I  ++ I + I+ + +S    + ++      +   
Sbjct: 1   MKILDWYIIKKYLLTFSVMLLLFVPIGIMVDISENIDKMLASKAPTDEIVLYYVNFVIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  +TE++ I ++G S +  ++P L  A +++I  F+    
Sbjct: 61  ANLLFPIFLFLSVIWFTSKLANDTEIIAILSSGVSYLRFLRPFLVAASIVAIVAFVMGMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P       +   +        Y+++    ++ D+L I       +      F  DS+ 
Sbjct: 121 IVPNASKGFNEFRFE--------YIKKGR-KKVRDNLEIYKQVTENDFIYLKSFSFDSKR 171

Query: 181 TQTHKI-----------YYAQSGSIDLDRQAIILNDGEVHRKSPISKD--ISIMKFKSYT 227
                +             A+S   + D     L  G   R      D  ++  KF +  
Sbjct: 172 GDNFTLEHFEDNVLEYKIQARSIKYNEDDSTYTLR-GFKKRIVGAMNDSLVNQRKFDT-I 229

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
              E  + + +   A   N   L              +  +    +KR +  +   I  +
Sbjct: 230 FPFEVDDLTPVTYMAETLNYQELDKFIAKEKQSGSPNVNKHLLVKYKRWSLPITAFILTI 289

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----L 343
           I++      ++ R+      +   ++I+F ++  F  I   + +   + P+L ++    +
Sbjct: 290 IAVAV---SSMKRRGGMGFNLAFGIAIAF-IYIFFDKIFGTMAEKSGFSPMLAVWVPNLV 345

Query: 344 FCISSIFLLMIKKK 357
           F + +++LL   ++
Sbjct: 346 FGVLALYLLYNARR 359


>gi|46198337|ref|YP_004004.1| hypothetical protein TTC0029 [Thermus thermophilus HB27]
 gi|46195959|gb|AAS80377.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
          Length = 347

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 119/357 (33%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     F    L IV +     + + +  + +       LL+   +  P  
Sbjct: 1   MKTLDRYLLREALPLFGGGLLVIVLLFLGGAVYEVLAPLVAKGADPYTLLRYLLFRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  + EL  +   G  R  L+ P L L   +++  F+    
Sbjct: 61  LARGAPVAYLFALLVLLSRLGEDAELKALLALGVRRERLLLPFLLLGTAIALAAFLLGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+  +  + L  +  L    + L     F+      + + K        G   V SR+
Sbjct: 121 LVPQALAQGQDLLRREVLERPRALLTPGATFQDAQGRVVYVGKV--EGEAIGALRVLSRE 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A+ GS       + + +G            ++ +F+   L  +         
Sbjct: 179 E----VLLAERGSFRGG--VLHVEEGTRITYEGSRPR-TLARFQRGELVLKDLTFDPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L+ L                   + +++R  + L   +F L ++  A       
Sbjct: 232 PANRMTLAEL-RKEVQRLRQMGVRAGLEATTYYRRFAEPLAAPVFALFAVGLAFYLLGGS 290

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   +  + +     +  +     +  +   +P+        L+    +FL +  ++
Sbjct: 291 RSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPFLAAFGPNLLYGALGLFLFLGGRR 347


>gi|251792101|ref|YP_003006821.1| permease [Aggregatibacter aphrophilus NJ8700]
 gi|247533488|gb|ACS96734.1| conserved permease [Aggregatibacter aphrophilus NJ8700]
          Length = 355

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 134/361 (37%), Gaps = 10/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T  +   +  +   +P  
Sbjct: 1   MNTLERYIGKSILGTIFATLLMLVGLSAIIKFVEQFRSVGKGTYDIWQAIAYTVLTMPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ ++G SR+ +   V+   I L +   I    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELVVMQSSGFSRMRIGLAVMKTTIPLVLLTMIIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   ++  ++ +  ++ ++ +   + +  L+ I+I   + 
Sbjct: 121 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGNN-FVYVRNISDDVELRDIYIYTFNE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +  K+ +A   + +  +  +   +    +   ++    + +   +             
Sbjct: 180 QRRLEKLKHANHAAFNDGKWMLKQVNESTIQPDSVNTVNRLNE--EWQTNLTPDKLGVAS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L +          +  + +   + ++L Q +   +  ++++        +
Sbjct: 238 LRPTSLSISGLSS-YITFLKETGQDSKNFELTYWRKLFQPISVGVMMMLALSFIFGP--L 294

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +   F  +     F          P    ++   LF   + +LL  K+
Sbjct: 295 RSVTAGARILIGICFGFLFYVVNELFGKFSLVYNTTPLIGALMPSMLFLAITWWLLARKR 354

Query: 357 K 357
            
Sbjct: 355 S 355


>gi|240113704|ref|ZP_04728194.1| hypothetical protein NgonM_09087 [Neisseria gonorrhoeae MS11]
 gi|240116445|ref|ZP_04730507.1| hypothetical protein NgonPID1_09468 [Neisseria gonorrhoeae PID18]
 gi|240122359|ref|ZP_04735315.1| hypothetical protein NgonP_00180 [Neisseria gonorrhoeae PID332]
 gi|240125093|ref|ZP_04737979.1| hypothetical protein NgonSK_02542 [Neisseria gonorrhoeae SK-92-679]
 gi|254494458|ref|ZP_05107629.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441667|ref|ZP_05795483.1| hypothetical protein NgonDG_11387 [Neisseria gonorrhoeae DGI2]
 gi|268599772|ref|ZP_06133939.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602117|ref|ZP_06136284.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268680946|ref|ZP_06147808.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683688|ref|ZP_06150550.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291045047|ref|ZP_06570755.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513498|gb|EEH62843.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268583903|gb|EEZ48579.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586248|gb|EEZ50924.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268621230|gb|EEZ53630.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623972|gb|EEZ56372.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011050|gb|EFE03047.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/372 (13%), Positives = 122/372 (32%), Gaps = 28/372 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A     K     T  +L+E        +  I +    P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGHTGLWLKEK-------NSIINVRGMLPDHTLLGIKI 173

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D     +   A S  ++ D     L +           + S    +++ +      
Sbjct: 174 WARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNL 232

Query: 235 SSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +++K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++  
Sbjct: 233 MDVLLVKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFA 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R       +F  + +          F +        P+    L    F + +
Sbjct: 289 F--TPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLA 346

Query: 349 IFLLMIKKKYTK 360
           +   +I+K+  +
Sbjct: 347 V--WLIRKQEKR 356


>gi|189219653|ref|YP_001940294.1| permease [Methylacidiphilum infernorum V4]
 gi|189186511|gb|ACD83696.1| Predicted permease [Methylacidiphilum infernorum V4]
          Length = 395

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 120/358 (33%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+ +      L + +    +  +  +   +     +  +   +       +P V+
Sbjct: 28  KILFRYLFKGFLFPLLFTIVAFCSLVIIADLFGSLEDFIQNKATPGQIFHYYLAYLPAVI 87

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ P      +   L  ++R+ EL+ +   G     +  P L + +L+++FL   +  +
Sbjct: 88  IMIVPPASLFSSLYFLMQLHRHGELIAMQACGVPLQKIFTPFLIIGVLVTLFLAALQ--L 145

Query: 122 EPKCRSTIK--QLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYN---PNNTLQGIFI 175
            P   S  K  Q+    +   T  +    + ++ + +  I    + +          + +
Sbjct: 146 GPGGNSQAKRDQILEDIKGNKTAVHALRGIIYKEEAEKRIWYFRQLDFIKNQGEDVEVVV 205

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL---QTES 232
            ++      K Y+A+  +   +    I  +         +  +    F++  L    T  
Sbjct: 206 QENSGKDLKK-YFARKAAWKDNH--WIFYEVNRIDYDSANNFLQSTYFETLPLVSWNTPP 262

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                +  K  D N S L        + +  LL  Y+ +F+  + + L  ++  LI +  
Sbjct: 263 RQMVALEKKPRDLNASELWKLINKPRSIQKTLLAPYQVQFYTLVAEPLTILVLLLIGLAE 322

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             + +       +      L   + +F  F  +       P       L  F + S+F
Sbjct: 323 GGRLSSRHPTAGVFNALFILIAFYLIFHFFQILGQGSRIPPAVAIFSPLVAFTLFSLF 380


>gi|238023197|ref|ZP_04603623.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
 gi|237865580|gb|EEP66720.1| hypothetical protein GCWU000324_03124 [Kingella oralis ATCC 51147]
          Length = 355

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 119/350 (34%), Gaps = 16/350 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++ +  +   +   I+ +   I ++   ++V  +  +L +  +     +P  
Sbjct: 1   MNLITRYLIKRLAVASCYALFAILALYSFIDLISETSVVGQNQYTLWVATQYILMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  N+EL +I  +G S   +I  ++  + + +I   +    
Sbjct: 61  AYQLMPLATLIGGLVALNQLANNSELAVIKTSGLSTANIIGIIIKFSAIFAIATVLLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSR 179
           + P+      ++ A A+     +     ++ +      I ++   P+NTL GI I   + 
Sbjct: 121 LAPELSRRGDEMKANARAGHIAAA-HNGIWIK-QPGSMINVASMLPDNTLVGIKIWHYND 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q  +   A+  ++     A  L++      +           + +         + ++
Sbjct: 179 QFQLTEAISAEKATVANG--AWQLHNTHSTTLADNHAQPQQQAEREWQTDIGKPLLNVLL 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    + + L            +  + Y   +  +L   +  ++  L+++         
Sbjct: 237 VKPEQMSFTAL-TQYIRYLKENHQQTQAYDVAWWNKLIYPIATMVMALVALAFTPN---- 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               +   + + L     +   F +          +   LY     +S+I
Sbjct: 292 --SGRHSNMGLKLFGGICLGLLFFFTGRLFG----FTTQLYGVPAMLSAI 335


>gi|50083533|ref|YP_045043.1| hypothetical protein ACIAD0255 [Acinetobacter sp. ADP1]
 gi|49529509|emb|CAG67221.1| conserved hypothetical protein; putative permease [Acinetobacter
           sp. ADP1]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 139/359 (38%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + + +V +  +   L  ++ + +   +    L    +  P  L
Sbjct: 5   RIVAKHVTKTTALAMLGTTIVLVILQVLFTYLGELSNLKADYSAWQAFL-YVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A++L +  F     +
Sbjct: 64  YEILPISALIGAILGLGTLASNSELIVMRSVGISLWRIVGWVIRSALVLVLLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P        +  K+  ++         + R +   +I +   N    L+ I +VD  D 
Sbjct: 124 VPYTNERANSV--KSHQSVAALGEVRGYWSR-EGQRFIYVDYANSQGQLKRIQVVDFDDN 180

Query: 182 -QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A+ G    D Q ++ +  ++  +      ++    + ++L  +      + +
Sbjct: 181 YRLKSVTNAEQGQFVKDGQWLLNHSQQMAIQGQGDAVLANAAKQPFSLALQPKYVHMVTI 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++   N      ++ +TY+  F K++      +   L++         +R
Sbjct: 241 DPEDLSFSQLVS-FMNYMREYSQVPKTYQLAFWKKVASPFALITLVLVACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L I  G ++   ++ +       +P +  +  + L  ++  +LL   +
Sbjct: 298 QQSMGFRLVIALFIGLGFYYLQDFLGYASLVYNPSPAWFVLGPIVLMFVAGSYLLYRAR 356


>gi|319900104|ref|YP_004159832.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
 gi|319415135|gb|ADV42246.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
          Length = 633

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 87/208 (41%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++++L+     F+ +    +FI  +  + + ++ +      + +L +   Y   T+
Sbjct: 4   IKKLDIFVLKSFCMLFMGTFFICLFIFMMQFLWRYVDELIGKGLEMTVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+  P    +       +     ELL +   G S + +++ ++    L+S   F  +N+
Sbjct: 64  VPVSLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRSLIVFIALVSCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I P+ ++ +  L    +       + E +F+   +   + +   +     L  + I +  
Sbjct: 124 IGPQAQTKLWTLLLSMKQKSPEVDIPEGVFYDEIEGYNLYVKHKDRKTGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
              +  +I  A SG ++   D+Q + L+
Sbjct: 184 KGFENAQIIKADSGKLEMTADKQHLYLH 211


>gi|119899192|ref|YP_934405.1| integral membrane protein [Azoarcus sp. BH72]
 gi|119671605|emb|CAL95518.1| probable integral membrane protein [Azoarcus sp. BH72]
          Length = 358

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 126/363 (34%), Gaps = 13/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+ + I  +     +  + +      +  ++ V      L   +     ++P  +
Sbjct: 3   KILSRYLAKEIFGATATVLVAFLGLFAFFDFINELDSVGKDGYQLYQAVIYVAMIVPGRV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   LT++ R++E+ ++  +G S   +++ +  +  +  +  F+    I
Sbjct: 63  YELLPIAVLIGSLYALTTLARHSEITVMRASGLSTWRMLRILGLIGSVFVVLTFVFGEYI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   S  +Q    A  +     L   L+ + D    I +    P+ +++ + I    + 
Sbjct: 123 APPAESAAQQWRLVATNSAVSQQLRSGLWVK-DGAQVINVRTLRPDRSMEHVRIYAFNEH 181

Query: 182 -QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTI 238
                I  A +G  D + Q   LN  +  R +      ++++ +   +     +    ++
Sbjct: 182 YGLESISEAATGVYDGEGQ-WRLNGIQRTRFTDER---TVLEHEDSIIWRSELTPEVLSV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           ++   ++     L     +     +  + Y     K+L      ++   +++  A     
Sbjct: 238 LMVVPERMSVANLWAYVRHLRENRQNADRYEIALWKKLVYPFAVLVMLALALPFAFT--H 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLMIK 355
            R       +F+ + +  G         +    N   P    +    +F  ++  +L   
Sbjct: 296 DRMGGVSVKVFLGVMLGIGFHLLNGLASNLGVINAWPPVLAALTPSLVFLATAAVMLYSV 355

Query: 356 KKY 358
           ++ 
Sbjct: 356 ERR 358


>gi|307721207|ref|YP_003892347.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979300|gb|ADN09335.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 340

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 5/250 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YIL      F+   L +  IA VI +++     +    S+  + K+  +++P +
Sbjct: 1   MQRLQKYILNNFSALFMSIFLPLFVIASVIFLIKLSTYTAVIQLSIWEMGKLYLFVLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E+++I   G     ++K     A +LS+ L     +
Sbjct: 61  LFYTLPITFFIAATLSLFKLSNDNEIIVIFALGIEPGFIVKTFFKPAFILSLLLAFDFLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K   +  +    F+ L  + F     D  + I + + + T   +F+ + + 
Sbjct: 121 VSPHTTVLSKNFLSYKKSEAKFN-LAASEFGNSFGDWLLYIGEKDKDGTFSKVFLFNKKQ 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                +  A+  ++  D   + L   DGE +  S  +   S + FK+  +        T 
Sbjct: 180 ENEEILIAAKRATVINDAGILRLKLMDGEGYSYS--TNKFSQVNFKAMLINDTLKADLTT 237

Query: 239 VLKANDQNLS 248
             +     LS
Sbjct: 238 YKQPLQYWLS 247


>gi|113971160|ref|YP_734953.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
 gi|113885844|gb|ABI39896.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-4]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + S+        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYSMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    + L  I +   + 
Sbjct: 121 GAPVAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A+S     D  +  L D +    S     +  +    +         S + 
Sbjct: 180 ELKLTNVVHAKSALFSKD--SWHLMDVKRTDLSYEEVKLEHLDEDIWRSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSIRGLMG-YLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|54307699|ref|YP_128719.1| putative permease [Photobacterium profundum SS9]
 gi|46912122|emb|CAG18917.1| putative permease [Photobacterium profundum SS9]
          Length = 356

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 147/359 (40%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  +   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATTALTLSTLVGLSAIIKYVEQLRKIGDGTYDLWKALIYVLLSMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMVLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ + + ++L A          ++  ++ +  +D +I I + +  +TL  + I    D 
Sbjct: 123 APQAQKSARELRAIWTSGGNILSVQSGVWAKDGND-FIYIGRVHEQSTLNAVNIWQFDDK 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
            T  K+ +A+S S   ++Q  +L D  V   S I +  +  KF +   +T  +    + +
Sbjct: 182 NTLSKMVFAKSASF-TEQQGWLLADVTVTNISKIQQ--TNTKFDTLPWKTSLSPDKLAIV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
           ++K  +  LS + +   +      +    Y   F ++L Q +   +  L++   V    R
Sbjct: 239 MVKPEELALSGVYD-YVSYLKESKQDASRYELAFWRKLLQPISIAVMMLLALSFVFGPLR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++    + +  +    +        F  +      +P    +    +F   +I+LL  K
Sbjct: 298 SVTMGARVLSGVIFGFTFYISNEV-FGPMSLVYRLHPAIGALGPSIVFLFITIYLLRRK 355


>gi|323344722|ref|ZP_08084946.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
           33269]
 gi|323093992|gb|EFZ36569.1| hypothetical protein HMPREF0663_11482 [Prevotella oralis ATCC
           33269]
          Length = 633

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++I +  G  F+ +     F+  +  + + I+ +     S+ ++ +   Y    +
Sbjct: 4   IKKLDIFIAKQFGLLFIGTFFICQFVLMMQFLWKSIDELVGKGLSMEVMAQFFWYAGLML 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    + +     ++  ++EL  I   G S I   + ++ ++I++S   F  +N 
Sbjct: 64  VPQALPLAILLSSLIAFGNLGESSELTAIKAAGISLIQAFRSLIIISIIISFSSFYFQNY 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           + P     I QL    +       + E +F+    +  + + K +     L GI I    
Sbjct: 124 VGPTANMKIAQLWISMKQKSPELAIPEGIFYDGIPNSNLYVQKKDMETGKLYGIMIYRMT 183

Query: 180 DT-QTHKIYYAQSGSIDLD--RQAIILN 204
            + +   I  A SG +     ++ ++L 
Sbjct: 184 GSYEDQAIILADSGMLQSTAEKKHLVLT 211


>gi|317477113|ref|ZP_07936354.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906656|gb|EFV28369.1| hypothetical protein HMPREF1016_03338 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 635

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  +++IL+     F+ +    +FI  +  + + ++ +      +N+L +   Y   T+
Sbjct: 4   IKKLDIFILKSFCLLFMGTFFICLFIFMMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P   P    +       +     ELL +   G S + +++P++F   L+    F  +N+
Sbjct: 64  VPASLPLAILLAALITFGNFGERFELLAMKAAGISLLKIMRPLIFFISLICCVSFYFQNV 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
           I PK ++ +  L    +       + E +F+   D   + +   N     L  + I +  
Sbjct: 124 IGPKAQTKLWTLLVSMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRETGMLYDVLIYNFE 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILN 204
              +  +I  + SG ++   D+Q + L+
Sbjct: 184 KGFENAQIIKSDSGRLEMTADKQHLYLH 211


>gi|269103491|ref|ZP_06156188.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163389|gb|EEZ41885.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 356

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 135/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIGTTALTLSTLVGLSAIIKYVEQLRKVGQGTYDLWNALIFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ L + + +     
Sbjct: 63  EMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPLMLMVMLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+ +   + L            ++  ++ +  +D +I I++ +    L GI I + +  
Sbjct: 123 APQAQKAARDLRTFWTSGGNMLSVQSGVWAKDGND-FIYIARVHEQKELDGINIWEFNGK 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
            +  +  +A+    + ++    L    V   +PI  +I   K+ +   QT       + +
Sbjct: 182 NKLTQSVFAEKAQYNAEK-GWSLKYVTVTDFAPI--EIKETKYPTLDWQTTLTPDKLAIV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +K  + +LS + N          +    Y   F ++  Q +   +  L+++        
Sbjct: 239 TVKPEELSLSGVYN-YVQYLKESKQDASRYELAFWRKALQPVSIAVMMLLALSFVFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                      +    +F +       + ++ + P  I  L   +  ++    L+ +K
Sbjct: 298 SVTMGARVLSGVIFGFAFYISNEVFGPMSQVYRLPPVIGALAPSMVFLAITIYLLKRK 355


>gi|260886192|ref|ZP_05897457.1| putative permease [Prevotella tannerae ATCC 51259]
 gi|260850440|gb|EEX70309.1| putative permease [Prevotella tannerae ATCC 51259]
          Length = 629

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 2/172 (1%)

Query: 34  QRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTG 93
           + ++ +     +++IL +   Y+  T++PM  P    + +     +M    ELL +   G
Sbjct: 6   RYVDEIVGKGITMDILGQFYWYMAITMVPMALPLAVLLASLISFGNMGERLELLAMKAAG 65

Query: 94  TSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
            S + +++P+  L I L+   F  +N      +  +  L    +       + E +F+  
Sbjct: 66  VSLLRIMRPLAVLVIGLAAVSFYFQNRAALDAQKNLTSLLWSLRETSPALEIPEGVFYGK 125

Query: 154 DDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIIL 203
            +   + + + +     L  + I  +       +I  A SG +++      L
Sbjct: 126 INSFSLYVERKDVATGKLYNVMIYKTDQGFDKAQIVVADSGRLEVTNDKEHL 177



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            + + T+R ++H++ T  +  + F  I    A   A++R+     P  I++ I F  ++ 
Sbjct: 336 DKSVRTHRIQWHQKFTMSIACIFFFFIG---APLGAIIRKGGLGMPTIIAV-ILFIFYYI 391

Query: 322 FSYIIHKIEQNPY--YIPILYLFLFCISSIFLLMIKK 356
            +    K+ ++     I  +++    ++ +   +  K
Sbjct: 392 INTSGMKMARDGAWNMIFGMWISTVVLTPLGCFLTYK 428


>gi|254468723|ref|ZP_05082129.1| permease YjgP/YjgQ [beta proteobacterium KB13]
 gi|207087533|gb|EDZ64816.1| permease YjgP/YjgQ [beta proteobacterium KB13]
          Length = 355

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 137/362 (37%), Gaps = 24/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI      +  +  + +VF+      LQ I  ++S    L+ ++      +P  L 
Sbjct: 2   KLAKYINFEFFINISLVAIGLVFLFAFFDFLQEIGNLNSGKYDLSKIIVFITLSMPGHLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     +  ++ N+EL+++  +G S + +   ++ +++   +  F+  N+I 
Sbjct: 62  EIIPLSCLIGAMFTVGQLSGNSELVVMRTSGMSILQIASSLIIVSLFFGVLTFMVGNLIT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDT 181
           P      +Q+   +      +  +  ++ +  ++ ++ I    P+ +L+ I I +   D 
Sbjct: 122 PVSEKNAQQIKISSTDGSVTTDFKSGVWMKDGNN-FVNIENVLPDASLRNIHIYEFDNDF 180

Query: 182 QTHKIYYAQSGSIDLD-------RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               I  A+ G  +         +Q+ IL++G   +  P     S++K            
Sbjct: 181 SLRSIVDAEKGRYENGIWELEKIKQSFILDEGFDVKTLPSGTWKSMIK----------PE 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              ++L + D+   F LN   N      +    Y   F +++ Q + P+I  L ++    
Sbjct: 231 MMNVLLISPDRMSIFDLNDFINYLKKNNQKTSRYEVSFWEKIIQPVMPIIMILFAVPFG- 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFL 351
                R   K   +F+ +          S + H    N   P    I+   +    +I+L
Sbjct: 290 -FFQERSGGKYLKMFLGIIFGIIYQIMNSMMRHIGVLNDWEPIITAIIPSIVILGIAIYL 348

Query: 352 LM 353
           + 
Sbjct: 349 MF 350


>gi|117921443|ref|YP_870635.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
 gi|117613775|gb|ABK49229.1| permease YjgP/YjgQ family protein [Shewanella sp. ANA-3]
          Length = 352

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    + L  I +   + 
Sbjct: 121 GAPVAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A+S     D  +  L D +    S     +  +    +         S + 
Sbjct: 180 ELKLTNVVHAKSALFSKD--SWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSIRGLMG-YLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSMVYELPAYVGAIAPSLLFTGIAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|269963273|ref|ZP_06177605.1| Predicted permease [Vibrio harveyi 1DA3]
 gi|269831988|gb|EEZ86115.1| Predicted permease [Vibrio harveyi 1DA3]
          Length = 356

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 130/357 (36%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V      L   L      IP  +
Sbjct: 3   KLLDLYIGRTIISTTALVLATFVGLSGIIKYVEQLRKVGRGAYDLMHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMLIVMTLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A    +   +   ++ R  +D +I I K   +            D 
Sbjct: 123 APEAQKMARDLRAFALSGGSIVSVRAGVWARDAND-FIFIGKVEDDKLYGLNMWRFDEDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
              K+ +A+      D   ++        ++        ++   +         + + +K
Sbjct: 182 NLDKVIFAEEVDYQQDNNWLMRYVQITDMENENVITKRDLEQMEWHTSLAPDKLAVVTVK 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             + +LS L +          +    Y   F ++L+Q L   +  L++   V    R++ 
Sbjct: 242 PEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLSQPLSIAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    +      F+G   +++ I   P +  +    +F   ++ LL  K
Sbjct: 301 MGARVLSGVVAGFTFYISSEFFGPLTLVYGIP--PVFGALAPSLVFLAIAVSLLRRK 355


>gi|217977121|ref|YP_002361268.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
 gi|217502497|gb|ACK49906.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
          Length = 380

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 128/367 (34%), Gaps = 12/367 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ + IG + L+    +     +  + Q +   +     L   L  +   +PTVL
Sbjct: 3   RLLTLYLAKRIGVTALLIEAMLCIPLVMTSLFQTLPAAAIRGGLLWPALLGT---LPTVL 59

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +      + M+ +  + ++ +   S  +L  P L +A       +   + I
Sbjct: 60  YLALPLSVGVAVALEFSRMSSDGMIAVLYSIRLSVWSLCLPALIVAAAAVGAGYALSSYI 119

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQGIFIVD-SR 179
            P     +  +    + +L    LE   F+  D     +   ++   +   G+FI   S 
Sbjct: 120 APSYVGQMHDVIHVIRNSLNHRMLEPAHFYTFDKGARTMFFQRWRSADVAAGMFIYQYSA 179

Query: 180 DTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +    +I  A+      + Q   I+LN G +      ++ +    F+ Y L  +   +  
Sbjct: 180 EKNEEQIINAEEAEFRRNEQGVVIVLNHGSIQTLPSGAQAMRNANFEQYALPIDMQGAGA 239

Query: 238 IVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +  K + + +  L             + P     + SE  KR    +  +   L+++   
Sbjct: 240 LP-KRDWRGVFELPLGDFFAAIPPERWDPRGYAEWMSEAAKRCFIPILALTHALLAVGLV 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              A    R         L+I              + +NP+ I ++ L +     + L +
Sbjct: 299 LTVAAATGRGSAATTSTVLAIPLIHVAILVGSESIVRENPHLIWLIALAIAAELGLALFL 358

Query: 354 IKKKYTK 360
           I ++  +
Sbjct: 359 IARRNAR 365


>gi|114048398|ref|YP_738948.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
 gi|113889840|gb|ABI43891.1| permease YjgP/YjgQ family protein [Shewanella sp. MR-7]
          Length = 352

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +L+P  
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +    + L  I +   + 
Sbjct: 121 GAPVAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +   + +A+S     D  +  L D +    S     +  +    +         S + 
Sbjct: 180 ELKLTNVVHAKSALFSND--SWHLMDVKRTDLSYDEVKLEHLDEDIWRSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSIRGLMG-YLDYLKNNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAIAPSLLFTGIAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|312131567|ref|YP_003998907.1| permease yjgp/yjgq family protein [Leadbetterella byssophila DSM
           17132]
 gi|311908113|gb|ADQ18554.1| permease YjgP/YjgQ family protein [Leadbetterella byssophila DSM
           17132]
          Length = 360

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 137/366 (37%), Gaps = 15/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           M   + Y+++    +++ +   IV +  VI  +++ +    +  S   I       L P 
Sbjct: 1   MTKIDRYLIKRFLTTYVFAVFIIVLVILVIDFVEKNDDFMETKPSNHAIFFDYYLNLAPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T      M  +TE++ I  +GTS   L+ P    + +++I+ F+   
Sbjct: 61  WANYISPLMIFISTVFFTAKMASHTEIIAILGSGTSFRRLMLPYFIGSGIVAIYSFVMVG 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
              PK      +   K      F    + +   +  ++Y  +S Y+  +NT     +   
Sbjct: 121 WFLPKANVPRIEFENKYIHNDFFFTGRD-IHLAVQKNVYAYLSSYDNSSNTAYDFTLEKV 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR--KSPISKDISIMKFKSYTLQTESANSS 236
            + +  +   A+  + D   +   L D  + +   S        +     +++   ++  
Sbjct: 180 ENNRLVEKLSARRATYDDSLKKWKLYDYNIRKIGISKDEMTYEAITPLDTSIKLYPSDFG 239

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +     +S L +      +   E +ETY+ E+++R       +I  ++ ++     
Sbjct: 240 NSKNRQETMTISQLEDYIDLINSRGAEGVETYKIEYYQRFATPFAVIILSIMGLIV---- 295

Query: 297 ALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFL 351
              R+ +    + I++      ++  F  +   I +     PIL ++L    F I S+ +
Sbjct: 296 -SARKARGGVGLQIAIGFVLAFLYIIFYILSKGIAEAGSMNPILAVWLPNIVFSIISVVM 354

Query: 352 LMIKKK 357
                +
Sbjct: 355 YFTVPR 360


>gi|257126590|ref|YP_003164704.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
 gi|257050529|gb|ACV39713.1| permease YjgP/YjgQ family protein [Leptotrichia buccalis C-1013-b]
          Length = 358

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 123/360 (34%), Gaps = 13/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF++  +    I  + + +     +       +  LK   Y IP +
Sbjct: 1   MNKLDKYIIVNYVKSFILGMMMFFLIFLLAESITLTGWLMDGKLKGSEALKYLRYGIPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +  +G S   +    +  + L+S+ +F     
Sbjct: 61  VTNTAPLGVLLGSLLCISKMAKQLEVAAMKTSGISFARVALFPILFSALVSLGVFWLNYD 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
              +  +  + L   K          ++ +F ++D    +     N  N T+  + I+  
Sbjct: 121 YLGRANTKKEDLKTLKIDNKEPVRSEKDFVFVKIDKRTVLFSGHANKNNGTMNYVTILKF 180

Query: 179 RD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +      K+Y A    I+         D  +      +        K +       +  
Sbjct: 181 ENGFKVIRKMYTASFAKINPKTNEWTFKD--LKEYDSKTNVTKPFDTKKFKFVASMEDVL 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +KA +  +  L            + L   R EF+ R++  L  ++  LI +      
Sbjct: 239 ASAVKAKNLTMPELREKTVYFTRVGADSLN-LRIEFYYRISFALSSLVMSLIGLSLG--- 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              R  +    + I LS+  G  +     I +       +PI Y+  F    IFL++  K
Sbjct: 295 --SRYVRGGAAVNIGLSVIIGYAYYGVSTILRSMAVSGTVPI-YVACFVPLIIFLVVGIK 351


>gi|33593405|ref|NP_881049.1| putative integral membrane protein [Bordetella pertussis Tohama I]
 gi|33572761|emb|CAE42691.1| putative integral membrane protein [Bordetella pertussis Tohama I]
 gi|332382814|gb|AEE67661.1| putative integral membrane protein [Bordetella pertussis CS]
          Length = 370

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 92/243 (37%), Gaps = 6/243 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I     +    +V +   + +++ +   +  +   +++L ++ +   T 
Sbjct: 1   MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP +      +     +T   R +E+++   +G S    ++PV  +A+ +++ +     +
Sbjct: 61  LPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGIFIVDS 178
             P     I +     +     S +    F        +  ++    P + L  +F    
Sbjct: 121 ASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVFFAEDPVRPGDELGAVFARSI 180

Query: 179 RDTQTHKIYYAQSGS---IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D +   +  A +     +    + ++L +G  +   P + +I ++ F  Y ++ ES   
Sbjct: 181 -DPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAG 239

Query: 236 STI 238
              
Sbjct: 240 EDP 242


>gi|297569344|ref|YP_003690688.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925259|gb|ADH86069.1| permease YjgP/YjgQ family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 121/362 (33%), Gaps = 13/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     R+  +    +V I  +I   +R++    +   +   +      IP +  
Sbjct: 4   LLDRYLFWQFTRNLALVLGGLVAIYLLIDFFERVDSFLDAGLGIGTAITYLLLKIPLIFE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P C  +     L  +NR+ EL+ + + G S   +I+P+L  A+  S     +   + 
Sbjct: 64  QLIPVCLLLAGIITLGVLNRHNELMALKSGGLSVRRIIRPLLLAALFFSGLALAAGQWLL 123

Query: 123 PKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           P   +   +    + +             ++R    +Y      +P + L    F   + 
Sbjct: 124 PPTLAETNRLWYEEVRQQTPEGIERNGRIYYRGAKGIYSFAQPDDPASGLPDFSFTAWNE 183

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
           + Q  ++  A     +  R    L DG++   +   +      F   T++          
Sbjct: 184 EYQLARLLTAAIAHWEAGR--WTLLDGQLKVLTADDQ-YRTTIFNEMTIELPERPEDFFL 240

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                 ++ LS LL       +         R E  ++++     +   L+ I       
Sbjct: 241 PPYALAERPLSELLARALAPEDSPRRY--EARLELQQKISYIFLGLPLLLVGIPLLLAMH 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIK 355
             R R     +  S  ++F V WG   I   +    +  P L  +L      S+    I 
Sbjct: 299 RGRGRDLALAVPASCIMAFAV-WGLWSICQALASAGHLSPALAAWLVHLLAGSLGFYFIL 357

Query: 356 KK 357
           ++
Sbjct: 358 RQ 359


>gi|59801588|ref|YP_208300.1| hypothetical protein NGO1229 [Neisseria gonorrhoeae FA 1090]
 gi|59718483|gb|AAW89888.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 356

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 121/370 (32%), Gaps = 26/370 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLASLSQLAAGSELAVIKASGMSTKKLLLILSQFGFIFAIAAVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A     K     T  +L+E           I +    P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNTGLWLKEKT-------SIINVRGMLPDHTLLGIKI 173

Query: 176 VDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D     +   A S  ++ D     L +           + S    +++ +      
Sbjct: 174 WARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSIMGTDKIETSAAAEETWPIAVRRNL 232

Query: 235 SSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              +++K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++  
Sbjct: 233 MDVLLVKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFA 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISS 348
                   R       +F  + +          F +        P+    L    F + +
Sbjct: 289 F--TPQTTRHGNMGLKLFGGICLGLLFHLAGRLFGFTSQLYGTPPFLAGALPTIAFALLA 346

Query: 349 IFLLMIKKKY 358
           ++L+  ++K 
Sbjct: 347 VWLIRKQEKR 356


>gi|15599022|ref|NP_252516.1| hypothetical protein PA3827 [Pseudomonas aeruginosa PAO1]
 gi|116051855|ref|YP_789302.1| hypothetical protein PA14_14510 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889889|ref|YP_002438753.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254236731|ref|ZP_04930054.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296387657|ref|ZP_06877132.1| putative permease [Pseudomonas aeruginosa PAb1]
 gi|313109246|ref|ZP_07795214.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
           39016]
 gi|9950002|gb|AAG07214.1|AE004800_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115587076|gb|ABJ13091.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168662|gb|EAZ54173.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770112|emb|CAW25874.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|310881716|gb|EFQ40310.1| hypothetical protein PA39016_001710055 [Pseudomonas aeruginosa
           39016]
          Length = 355

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 11/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N + S++  +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDI-SASYGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   A AQ        +  L+       YI I+   PN  L G+       
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLW-HRQGREYIHINAVQPNGVLYGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSST 237
                   +A+    + D     L +       P  K   ++K   + +  Q      +T
Sbjct: 179 QRGLESASFAKRARFETDH--WQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQLLNT 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V++    ++S L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 237 VVMEPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R++   ++    + +               +   +  P    ++   +  ++ ++LL  
Sbjct: 296 RSVTLGQRIFTGVLVGFVFRIAQDLLGPSSL-VFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|308272620|emb|CBX29224.1| hypothetical protein N47_J02050 [uncultured Desulfobacterium sp.]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 127/360 (35%), Gaps = 16/360 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ + I + F +    I+ I  V+       +   S  +           +P  
Sbjct: 3   MSIIDRYLTKEILKYFCIIIAAIIGIYIVVDFFDETEIFFESGLAFPTAFFCFISKMP-- 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +        M++N E++ I + G S   L++P+L +  +    +      
Sbjct: 61  IAQFIPLSVLLSILVTFGLMSKNNEIVAIKSGGISIYHLLRPILLIGSVFFCVVIFLSEA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P  +S  +++  +A        L+E   +    +L   I  Y+ +  T+ GI +    
Sbjct: 121 VVPITKSKAEKILTQANRKKFAMALKEKDIWIKGHNLITHIEYYDSSKKTIHGIKLYFFD 180

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D  +  +    + G  +      IL D    +    + +IS  K     L     +   +
Sbjct: 181 DKFRVVRRIDCEKGVFNQGN--WILYDIIEQKLDKNNSEISFHKQLIEHLVFSPDDIGVV 238

Query: 239 VLKANDQNLSFLLN--PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + +   +   L +      +  Y      TYR++F+ +L+     +I   +        
Sbjct: 239 AVTSESMSAFELYDYIKKIESEGYDA---TTYRTDFYAKLSFPFICIIMCFVG--TGIAF 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLLM 353
            L  +      I   +  +F  +  F + I   E    NP++  ++   +F    IF ++
Sbjct: 294 RLGAKESLPVNIVYGIGAAFSYWVFFGFCISLGEGGILNPFFAALIPNLVFLGFGIFTVL 353


>gi|289649165|ref|ZP_06480508.1| hypothetical protein Psyrpa2_15669 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 353

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 119/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+  +   D     L D      +    ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L N   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L      ++  + + 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|71064626|ref|YP_263353.1| hypothetical protein Psyc_0045 [Psychrobacter arcticus 273-4]
 gi|71037611|gb|AAZ17919.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 416

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 132/396 (33%), Gaps = 65/396 (16%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           +    ++++   + +     +++L  I GY +P  L ++ P  F +    V   +  + E
Sbjct: 1   MMLGGRLIRYFGIAAEGNLDISLLFTIIGYNLPYFLELILPLAFFIALMLVFGRLYVDQE 60

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +I+ +G SR  L + +  L + L +       + +P    + + +  +  L   F  +
Sbjct: 61  MAVINASGISRGRLGRLMTPLILALFVGEAALSIVGKPWGVRSSENVWQQQALTSAFDLI 120

Query: 146 EENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR--------DTQTHKIYYAQSGSIDL 196
             N F     + ++ +   + +   LQ + ++ S            T K   A++ ++D+
Sbjct: 121 RPNQFIS-SGNYHLYVGSLSDDKKQLQDVILIQSEPEKKGSAVKNNTAKTNTAKNSAMDV 179

Query: 197 DR----------------------------------------------QAIILNDGEVHR 210
           +                                                 + L  G  + 
Sbjct: 180 ENNIDPETAEQLNIPELPNALANSTNISKDAITLAKRAQQVDTGNSGVTQLDLFQGRRYE 239

Query: 211 KSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRS 270
               S   + + F  Y +    ++   I     +      L       N +       R+
Sbjct: 240 VGAGSLKYNQVGFDRYRITLTESSKEVITEDNIETQAIGPLWQ-AATGNAQVGSNNAMRA 298

Query: 271 ---EFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
              E   RL+     +I  ++++  A  R   RQ + +  +F S+ +      G   + +
Sbjct: 299 AQGELGYRLSLPWLMIIAPMLAVPLAQVRP--RQGRWLR-LFPSILLFVSCVLGIISLKN 355

Query: 328 KIEQ-NPYYIPILYLFL-FCISSIFLLMIKKKYTKI 361
            + + +       +L L F   ++++    +   ++
Sbjct: 356 AVGKGSVSVWAYAWLILGFMALALYINWGSRVQHRL 391


>gi|261253952|ref|ZP_05946525.1| putative membrane protein [Vibrio orientalis CIP 102891]
 gi|260937343|gb|EEX93332.1| putative membrane protein [Vibrio orientalis CIP 102891]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 136/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGQGTYDLIQALLYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGLSVLKTAVPLMIMVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A +        +   ++ R  +D +I I K   +            + 
Sbjct: 123 APQAQKAARDLRAISTSGGALLSVRTGVWARDAND-FIFIGKVEDDTIYGMNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +A+      D    ++ D ++        +IS      Y+  T  A    + + 
Sbjct: 182 RLESVVHAKRVDYVSDNT-WMMKDVQLTEMVDEI-EISKHSLPEYSWTTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +L  L +   +      +    Y   F +++TQ     +  L++   +    R+
Sbjct: 240 VKPEELSLGGLYD-YVSYLKASEQDPARYELAFWRKVTQPFSIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +    + +  +    +      F+G   +++ I   P +  ++   +F   ++ LL  K
Sbjct: 299 VTMGARILSGVIAGFTFYISSEFFGPLSLVYNIP--PVFGAVMPSIVFLTIALMLLRRK 355


>gi|53803847|ref|YP_114531.1| hypothetical protein MCA2101 [Methylococcus capsulatus str. Bath]
 gi|53757608|gb|AAU91899.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 113/361 (31%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   YI   + +    + L ++ +         +  +      L  +        P  
Sbjct: 1   MNTLNRYIGWEVIKGAAFAALVLLALLNFFTFADELRDLGEGNYGLGSIFLYLTLTSPHS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    VL +M  N EL+ +   G SR  ++  VL   I++S+   +    
Sbjct: 61  LYELIPSGALIGGLVVLGNMANNHELVAMQAAGVSRGRIVWAVLRAGIVISLISVVISEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L A A      S  +  ++ R D ++Y+ + +      L  I I +   
Sbjct: 121 VIPPAERAAQMLKATATRQQVASQTKYGVWIR-DGNVYVNVREIENQERLGDIHIFEISP 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQTESANSSTI 238
                +   A   S   DR    L D  + R  P  +  I+  K +       S +   +
Sbjct: 180 DGRPALAMHAARASF--DRGIWKLEDIGLTRFDPAGNAAIAEHKEQEDWSSVLSPDMLDV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +   +   +  L           +        F  R+   L  +   L++I        
Sbjct: 238 FIVRPENLSAQDLAKYMAYQTENAQKSLAVEQAFWGRMVNPLITLAMLLLAIPFVFNAR- 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R       I I ++I  G +     + H         P+  +    +     L   ++ 
Sbjct: 297 -RDVSSGQRIVIGVTIGLGFYLTNRMVSHLGLVYEVNAPLTMVTPPLVVLFAALAAFRRR 355

Query: 359 T 359
            
Sbjct: 356 P 356


>gi|296122759|ref|YP_003630537.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
 gi|296015099|gb|ADG68338.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
          Length = 394

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 120/404 (29%), Gaps = 56/404 (13%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL  + + F +S      +     +                +L+I  ++IPT+
Sbjct: 2   MPLLQRYILVDLLKVFAVSAAGFTLLLVFAGVYV---EAKEHGLGPMQILQILPFIIPTL 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP   P    +    V   ++ + E++     G   I+++ P   L ++LSIF  +  + 
Sbjct: 59  LPFTIPTALLLTVCVVYGRLSGDQEIIAAKAAGIHIISVLWPAFLLGVVLSIFTLVITDQ 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEE-NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P     I++  A A   + F  L+  N     D  L I +            F     
Sbjct: 119 MIPWSMKRIQRTIAMAVEDIFFDVLKAQNQLNLRDQGLSITVMDVRDRTLYMPTFRYMR- 177

Query: 180 DTQTHKIYYAQSGSI--DLDRQAIILN--DGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                    A+   +  DLDR  +++   DG +      +  +       Y  +     +
Sbjct: 178 -GNKPVTVQAKEARLRFDLDRDVVVMEFKDGYISLPDDANTRVRF----RYDAREFPLPN 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYR-------------------------- 269
            +   K+ D     +L                                            
Sbjct: 233 RSQKAKSRDMTSREILAETRAMATGDATATRQLAIEAALILASGDFDRFGEKEFAVSRYQ 292

Query: 270 ------------SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                       +E H R++       F L+    A     + + + +            
Sbjct: 293 VDEERNRSMKLTTELHNRISMAFGCFFFVLVGAPFA---VYMAKNQFLTSFLFCFVPILV 349

Query: 318 VFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKKYTK 360
           V++  S +   + +     P   ++      ++  L I ++  +
Sbjct: 350 VYYPLSMMAQNLSKVGKVDPSWAVWLPNGALTLGFLYIIRQLAR 393


>gi|117925963|ref|YP_866580.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
 gi|117609719|gb|ABK45174.1| permease YjgP/YjgQ family protein [Magnetococcus sp. MC-1]
          Length = 371

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 128/368 (34%), Gaps = 17/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M     Y+L+   + F+      + + +++   ++I         +   ++++    +P 
Sbjct: 1   MPILFRYLLQLFLQGFVKVFSIFIALFFLMDGAEQIRRFGGRDHVIWQDMVELIFLRMPH 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                 P    + T  V+T + R  EL +I + G S + ++ P L   ++++    +  +
Sbjct: 61  FFTQFLPPIALLTTLFVVTRLTRLNELTVIRSGGVSLVRILIPFLLGGVMVAGVQMLLLD 120

Query: 120 IIEPKCRSTIKQLSAKA----QLALTFSYL------EENLFFRLDDDLYIKISKYNPNNT 169
            I P+  +  ++   +     Q AL  S +      ++NL+ R    +      Y     
Sbjct: 121 QIVPRTNAAAERSIFRMNLPEQAALYESMVSLEGVRKDNLWIRDGGQILHAKRAYGDKRL 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           L  + I      +   +  A +     + +  +L++G+++R +  +          + + 
Sbjct: 181 LLEVTIF-RFTPEHDLLMRADAHKATWENEGWVLHNGQIYRFNGHTTQSEPFTRMPWAIN 239

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            E         +  + +L  L     +           Y    +++L   L  +   L++
Sbjct: 240 LEKEQIKRATPQPEELSLQALWKH-ADRLAREGYDATPYWVTLYRKLADPLTTLAAILLA 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG--FSYIIHKIEQNPYYIPILYLFLFCIS 347
              A    L R       + +     F +F        +   E+ P ++      +F I 
Sbjct: 299 FPFAL--RLHRMGGTFRSMLMGFITGFFMFVVVDLFTALGFGERLPPFLAAFAPVMFFIC 356

Query: 348 SIFLLMIK 355
               L++ 
Sbjct: 357 IGGFLLLH 364


>gi|308050967|ref|YP_003914533.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
 gi|307633157|gb|ADN77459.1| permease YjgP/YjgQ family protein [Ferrimonas balearica DSM 9799]
          Length = 354

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 132/357 (36%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  +LYI R I  +  +  L +  ++ +I+ + ++ LV     +   +     +L+P  
Sbjct: 2   IRILDLYIARTIINTSALCLLVLTGLSGLIKFVDQLRLVGRGDFTTWDVALYVLFLVPRD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  ++EL+++   G SR+ +   V+  A+ L I   +    
Sbjct: 62  IEMFFPIAAMLGALIGMGMLASSSELVVMQAAGLSRLNIAASVMKTAVPLMIIAMLIGEY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSR 179
           + P    T +++ A+     +        + +  + L++ I++     TL+G+ I     
Sbjct: 122 VAPVSEQTAREMRAQKTSGGSLISSSTGTWAKDGE-LFVNITEVQDARTLKGVTIYRFDG 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    +I +A+ G    D +A  L D      +             +           + 
Sbjct: 181 DNLLREITFAEQGLY--DGKAWRLLDVTETDLTDEQVSTLDRDELRWPSSLTPEKLQVVT 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L++   +      +    Y     +++ Q +   +  ++++         
Sbjct: 239 VKPEGLSIEGLID-YVDYLKANRQDTTRYELALWRKVAQPITVGVMMMLALSFIFGPLRT 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIK 355
                   + +    SF +       +  +   P ++  +L   LF I++  LL  +
Sbjct: 298 VTMGARVLLGVITGFSFYIANEIFGPMSLVMGLPTFLGAMLPSILFAIAAFALLQRR 354


>gi|224539916|ref|ZP_03680455.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518470|gb|EEF87575.1| hypothetical protein BACCELL_04827 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 391

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 138/361 (38%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 33  LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYLNFIPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 93  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFFLGS 152

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            I P+    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 153 YIIPQGSVTRINFEDKYYKQRKSNTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 208

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D       I+ D  +     + ++  I+K            
Sbjct: 209 DKFKDKQLVSHLTARSITYDTASVHKWIIKDYMIREMDGMKEN--IVKGDRIDSTLFMEP 266

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + ++   L              ++ +  E+HKR+       I  LI +  
Sbjct: 267 ADFLIMKNQQEMMTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 326

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           + K+    +      + I L++SF  +  F  I      N    P++ +++  I   F+ 
Sbjct: 327 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAVWIPNILYAFIA 382

Query: 353 M 353
            
Sbjct: 383 F 383


>gi|107103347|ref|ZP_01367265.1| hypothetical protein PaerPA_01004416 [Pseudomonas aeruginosa PACS2]
          Length = 355

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 11/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N + S++  +   L+      P  
Sbjct: 1   MVKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDI-SASYGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   A AQ        +  L+       YI I+   PN  L G+       
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLW-HRQGREYIHINAVQPNGVLYGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSST 237
                   +A+    + D     L +       P  K   ++K   + +  Q      +T
Sbjct: 179 QRGLESASFAKRARFETDH--WQLEEVTTTLLHPREKRSEVIKLPTERWDAQLSPQLLNT 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V++    ++S L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 237 VVMEPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R++   ++    + +               +   +  P    ++   +  ++ ++LL  
Sbjct: 296 RSVTLGQRIFTGVLVGFVFRIAQDLLGPSSL-VFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|289623814|ref|ZP_06456768.1| hypothetical protein PsyrpaN_01505 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|298485820|ref|ZP_07003898.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159644|gb|EFI00687.1| putative membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330867847|gb|EGH02556.1| hypothetical protein PSYAE_11466 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330890524|gb|EGH23185.1| hypothetical protein PSYMO_17663 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989712|gb|EGH87815.1| hypothetical protein PLA107_32131 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009019|gb|EGH89075.1| hypothetical protein PSYTB_04820 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 353

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 119/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+  +   D     L D      +    ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L N   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L      ++  + + 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|160871958|ref|ZP_02062090.1| permease [Rickettsiella grylli]
 gi|159120757|gb|EDP46095.1| permease [Rickettsiella grylli]
          Length = 376

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 101/265 (38%), Gaps = 13/265 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  S L+    +  I    + +  +N V+    + NIL K+     P  L 
Sbjct: 2   ILFRYLTREVLTSLLLITSLLFLILISNEFVHYLNQVAYGKFAANILWKLIVLESPRFLA 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   +        +  + E+ +++  G S   L +  L    LL   +      + 
Sbjct: 62  ILLPFSLCLAILFTYGRLYADYEMTVLNACGFSLGQLTRLSLPFIFLLFFIVAGLSLWLS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPN-NTLQGIFIVDSRD 180
           P   S   +L  +  +A+    L+   F + +     I + K + + +T++ IF+  +  
Sbjct: 122 PSLLSYRNKLLTQTGIAIELQTLQPGRFQQTNQGHRIIYVEKVSTDHHTVKNIFLAQTSP 181

Query: 181 TQT------HKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
            +         I  A  G   L+        +  +G+ ++ +P   +  I  F++Y +  
Sbjct: 182 KEASQEITPWTILSAHRGYQTLNPHTKEPFFVAVNGKRYQGTPGQTEYYITAFQNYGIHI 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNP 255
               ++T   K +  +   L N +P
Sbjct: 242 NLPRTTTH-KKQDTLSSMALWNASP 265


>gi|320537762|ref|ZP_08037685.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
 gi|320145385|gb|EFW37078.1| hypothetical protein HMPREF9554_02439 [Treponema phagedenis F0421]
          Length = 377

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 126/358 (35%), Gaps = 27/358 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LY+ + +   F +  LF  FI +V  IL     + S       ++ +  Y +P ++
Sbjct: 12  KILFLYLSKELLLYFFVCFLFFFFIFFVNNILLMAEDILSKHAPFKDVMLLMFYSLPMII 71

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +     + E L ++  G S   L+ PVL + + +SI  F + +++
Sbjct: 72  ANSAPFAALVGTLMCIGRFFSDLEFLAMNALGVSMKFLLVPVLAVGLFISIVSFFTNDVL 131

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P     ++++      +     LE     +  + + I  S    +  +  + I+D  + 
Sbjct: 132 LPASFIQLRKVYWDISTSTPALELESYSIKKNQNAVVI--SGLIKDGIIDELLIIDKGEN 189

Query: 182 QTHKIYYAQSG------------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +  +I   +              ++D++   +++ DG         K    +  K     
Sbjct: 190 KESRILGGKKSELKKSTDPAVIMTLDMNEPQMLIIDG------KDEKKYDSIVGKKIAYN 243

Query: 230 TESANSSTIVLK---ANDQNLSFLLN--PNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             + N + +       +D     L          N    LL  Y  EFHK+ +     + 
Sbjct: 244 VLAKNINPVYFNALGPSDMTSYDLYKDIQTRKKNNEDKRLLNIYNMEFHKKFSIPFGALF 303

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           F  ++   +    +  Q        +     + V  G   I    + +  +  +++L 
Sbjct: 304 FVFLAFGISSVGKVHNQSVGFILGLLIAVAYWAVLMGGQEISLTFDVSGAF--MMWLP 359


>gi|167622904|ref|YP_001673198.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
 gi|167352926|gb|ABZ75539.1| permease YjgP/YjgQ family protein [Shewanella halifaxensis HAW-EB4]
          Length = 352

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 133/349 (38%), Gaps = 15/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI R +  +  ++ L +  ++ +I+ + ++ LV   T ++        +LIP  
Sbjct: 1   MRILDFYIARTLISTSSLALLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ + G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSAGLSRLQITMSAMKTAIPLMIIVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ + D DL++ I      N L+ I + +  D
Sbjct: 121 VAPVAELRAKEIKRTNISGGSLIDSNRGIWAK-DGDLFVNIGGAADINNLRDITLYEFDD 179

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T T     +A S       +   L D      +     ++ +K + +         S + 
Sbjct: 180 TTTLTSTIHADSAEYK--DKYWQLYDVRRTTLTDDRVVLTNLKEEKWVSSLTPEKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  LL+   +      +  E Y     ++L Q +   +  L+++         
Sbjct: 238 VKPEALSIEGLLD-YLDYLKSNNQASERYELALWRKLLQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                +  + +   +  GV  GFS+ I      P  I  +Y     IS+
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYICSEIFGPLSI--VYGLPAFISA 335


>gi|255536554|ref|YP_003096925.1| hypothetical protein FIC_02430 [Flavobacteriaceae bacterium
           3519-10]
 gi|255342750|gb|ACU08863.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 364

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 132/372 (35%), Gaps = 24/372 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  +L+I++    +F      +  I  +I +  +   + S+  S+   L     Y I  
Sbjct: 1   MKIIDLHIIKKYLGTFAFMLGLLTLIVLIIDVQAKAPRIESNGFSVTEFLINFYPYWIVN 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++         +      + M  NTE++ I ++G S     +P L  +  ++    +  +
Sbjct: 61  LIITFMSILVFISVIFFTSRMANNTEIVAIISSGASFHRFARPYLITSSFIAAIALLLNH 120

Query: 120 IIEPKCRSTIKQLS-----AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
            + P       +L      AK++     +        + +   YI I  YN        F
Sbjct: 121 FVLPLANVKKNELEPYTYTAKSREEYIGNTEVSTQLSKSE---YIFIKSYNRKERRGSGF 177

Query: 175 IVDSRDTQTHKIY--YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           +    D      Y   A   S D  +   ILN   + +     +   +    + T     
Sbjct: 178 MYQKFDKNRKLTYQIIANEFSWDDKKSHFILNS-YLEKTVRKDETEKLGSGDTMTKSFGH 236

Query: 233 ANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                   VL   ++    L+             L  Y++E H+R +  +  +I   + +
Sbjct: 237 PPEELFPGVLLGQNKTTPDLIGFIDREKEKGNANLGNYQNELHQRTSMPVSVIILTFLGL 296

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFL----FC 345
             A      ++++    + +++ IS    + FS+  +  + +N    P+L ++L    F 
Sbjct: 297 SLA-----SQKKRGGLGMNLAIGISLAFVFVFSFEALKVVSKNQSLPPLLAMWLPNLIFG 351

Query: 346 ISSIFLLMIKKK 357
             +++L + +  
Sbjct: 352 PVALYLYLKRAN 363


>gi|299771879|ref|YP_003733905.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
 gi|298701967|gb|ADI92532.1| hypothetical protein AOLE_18250 [Acinetobacter sp. DR1]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 128/353 (36%), Gaps = 8/353 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQILFTYLGELGELKPD-YNAWQALIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P        +  K+  ++      +  + R +   +I I   N    L+ I +VD  ++
Sbjct: 124 IPYTNEKAASV--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLKDIQVVDFDQN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  AQ G    D Q  +    ++   +  +   +    +S +L  +      + L
Sbjct: 181 YYLQSLINAQQGQFVKDGQWALKKAQQMDILAAGNAIKTDHDEQSLSLALQPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
              D + S L++       Y  ++ +TY+  F +++      +   L++   +    R  
Sbjct: 241 DPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLIALVLVACSFIFGPLRQQ 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               + +  +FI LS  +   +     +       +++ +  L +F   S  L
Sbjct: 300 SMGFRLVIALFIGLSFYYLQDFLGYASLVYAPSPAWFVLVPILLMFGAGSYLL 352


>gi|262280664|ref|ZP_06058447.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257564|gb|EEY76299.1| permease YjgP/YjgQ family protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 130/360 (36%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPD-YNAWQALIYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSAGISLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ I +VD  ++
Sbjct: 124 IPYTNEKAQSV--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLKDIQVVDFDQN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESANSSTIV 239
                +  AQ G    + Q   L   E          I      +S  L  +      + 
Sbjct: 181 YYLQSLINAQQGQFVKNGQ-WALKKAEQMDILAAGNAIKTDHDEQSLALALQPKYVHMVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L   D + S L++       Y  ++ +TY+  F +++      +   L++         +
Sbjct: 240 LDPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLIALVLVACSFIFGP--L 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ+     + I+L I    ++   ++ +       +P +  ++ + L   +  +LL   +
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYRAR 356


>gi|254242518|ref|ZP_04935840.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195896|gb|EAZ59959.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 355

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 122/359 (33%), Gaps = 11/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +N + S++  +   L+      P  
Sbjct: 1   MIKLDRYIGVTVFVAILAVLGVILGLALLFAFIDELNDI-SASYGIGDALRFIFLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  AYDMLPMAALIGCLVGLGTLASNSELTIMRAAGVSLSRIVWAVMKPMLVLMLAGILVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   A AQ        +  L+       YI I+   PN  L G+       
Sbjct: 120 VAPWTENIAQSGRALAQGGGDSQSSKRGLW-HRQGREYIHINAVQPNGVLYGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSST 237
                   +A+    + D     L +       P  K   ++K   + +  Q      +T
Sbjct: 179 QRGLESASFAKRARFETDH--WQLEEVTTTLLHPREKRSEVVKLPTERWDAQLSPQLLNT 236

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V++    ++S L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 237 VVMEPEALSISGL-WQYIHYLADQGLNNNRYWLAFWTKVLQPLVTAALVLMAISFIFGPL 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R++   ++    + +               +   +  P    ++   +  ++ ++LL  
Sbjct: 296 RSVTLGQRIFTGVLVGFVFRIAQDLLGPSSL-VFDFPPLLAVVIPASICALAGVWLLRR 353


>gi|295132762|ref|YP_003583438.1| permease [Zunongwangia profunda SM-A87]
 gi|294980777|gb|ADF51242.1| predicted permease [Zunongwangia profunda SM-A87]
          Length = 358

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 133/362 (36%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  L  + I   + + ++I+ +  +      + +         
Sbjct: 1   MKILDWYILKRYLGTFSMMLLLFIPIGITVNLAEKIDKILENEVPFVEVAEYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P +  A ++ I        
Sbjct: 61  ANLLFPLFLFLSIIWFTSKLANNTEVIAFLSSGVSFYRFLRPYIIGATIVCIAALGLSMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK      +   +       +   ++++ +++D+  I  S + P       F+++  +
Sbjct: 121 LAPKASKGFNEFKYEYLKRGHETQETKDVYRQVNDNEVIYASHFRPKTHTANNFVIEHFE 180

Query: 181 TQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               K    A     + +     L + +          +S        L  E    +   
Sbjct: 181 GNQLKFKISASRLKFNTEDSTYTLTNVDKRIIGENGDIMSNQAKLDTILPFEFDELTPET 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   + S L              +  Y    +KR++  +   I  +I++      ++ 
Sbjct: 241 YIAETLSFSELNEFIKKESRRGSGNMNMYLVAAYKRVSIPVSAFILTIIAVAV---SSMK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIK 355
           R+      + + +S++F +F  F  +   I +   + P+L +++    F I ++FLL+  
Sbjct: 298 RRGGMGVNLAVGISLAF-IFIFFDKVFGTIAEQSTFSPLLAVWIPNISFGILAVFLLLKA 356

Query: 356 KK 357
           K+
Sbjct: 357 KR 358


>gi|323492970|ref|ZP_08098108.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
           LMG 20546]
 gi|323312801|gb|EGA65927.1| lipopolysaccharide ABC transporter permease [Vibrio brasiliensis
           LMG 20546]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 132/358 (36%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI + I  +  +     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGKTIIATTSLVLATFVGLSAIIKYVEQLRKVGEGTYDLIQALLFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLNIGMSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A        +   ++ R  +D +I I K   +            + 
Sbjct: 123 APQAQKMARDLRAFATSGGAILSVRTGVWARDAND-FIFIGKVEDDKIYAMNMWRFDEEK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVL 240
           +   + +A +     D     + D ++       +     +   S+T        + + +
Sbjct: 182 RLESVVHAATVEYVADNT-WKMKDVQLTEMVDEVEISKQSLPEYSWTTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +L  L +          +    Y   F +++TQ     +  L++   +    R++
Sbjct: 241 KPEELSLGGLYD-YVTYLKASEQDPSRYELAFWRKVTQPFSIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               + +  +    +      F+G   +++ I   P +  ++   +F   ++ LL  K
Sbjct: 300 TMGARILSGVIAGFTFYISSEFFGPLSLVYNIP--PVFGAVMPSLVFLTIALMLLRRK 355


>gi|15807418|ref|NP_296151.1| hypothetical protein DR_2431 [Deinococcus radiodurans R1]
 gi|6460246|gb|AAF11972.1|AE002073_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 420

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 136/374 (36%), Gaps = 26/374 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  + + I  + +   S  ++ ++    +P  
Sbjct: 6   MKLFERYVLSEILPPLVGALAAVILLFLLAGLEEVIGPLLAKGASPLLVARLLALSVPEA 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P      T   L+ +  ++E+      G     L++PVL LA+ +++  F+    
Sbjct: 66  LSRALPIGLMFATLLGLSRLAADSEIKGALAGGVPVTRLLRPVLLLALGITVLSFLIGEG 125

Query: 121 IEPKCRSTIKQLSAKAQLALT--FSYLEENL-----FFRLDDDLYIKISKYNPNNTLQGI 173
           + PK  S   ++  +            +              +  I + +  P   L+ +
Sbjct: 126 LRPKAYSESLRVQQQIVFDNPRVTGLGQAGEGGQTLVLTDALNRAISVGEVRPGGELRDL 185

Query: 174 FIVDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE- 231
            IV  +  +  + +  A+SG++      + L  G+       ++ ++++ F++  L  + 
Sbjct: 186 RIVAMQAGEAPREVITAESGTLVPGSNVLELRRGQRVTYQ-NARPVTVLSFENGRLPVQD 244

Query: 232 -------SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
                     SST      +  L  L +        +      + + FH+++ + L  + 
Sbjct: 245 VQANFAKDERSSTAQAGLVNLPLRELWDRTEAFRQQKVPAPAEFTA-FHRKIAEPLAALA 303

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL--- 341
               ++  A       +         ++ ++F  +  +S     + +N    P++     
Sbjct: 304 LAFFAVSLA---VYSFRGSLNLGFTWAILLAFAYYATWSVF-RIMGENGGLPPVVAAYAP 359

Query: 342 -FLFCISSIFLLMI 354
             +  ++ + LL  
Sbjct: 360 DLIAVVAGLALLWR 373


>gi|189425644|ref|YP_001952821.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
 gi|189421903|gb|ACD96301.1| permease YjgP/YjgQ family protein [Geobacter lovleyi SZ]
          Length = 359

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 135/364 (37%), Gaps = 16/364 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+     R FL+     + +  ++  ++++   S +  SL+ +L+   + IP +L
Sbjct: 3   GIVGRYLAGTWLRLFLLCQGGFLAVYLILDFMEKLGRFSKAGASLSAILQFFLFKIPEML 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   M T   L  ++R++EL  + + G S   ++ P+L L +L S+ L ++   +
Sbjct: 63  GQTMPFAVLMATLLALGMLSRSSELTALRSCGLSIPRIVLPILMLGLLGSLVLLVNSEFV 122

Query: 122 EPKCRSTIKQLS-AKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
            PK    ++ +     +     ++   N  +   ++L ++   + P   TL+G+ + +  
Sbjct: 123 VPKSYQQMEHIEKVVIKKQSVNTFFRLNNIWFRSNNLILQAKVFEPLTRTLKGVTVWELS 182

Query: 180 DTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                     A+          ++       R    +    ++     ++          
Sbjct: 183 ADMQPVRRMDAEQALYGSGGWELLQV-----RTRSFAGQGGVVASARLSVPLTLKVDDLR 237

Query: 239 VLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +L  N  N SF  L     +          YR+  H +L       +  ++ I  A K  
Sbjct: 238 ILDNNADNFSFRKLREYAVSLEKGGYPAGRYRTMMHAKLALPFGAFVMVVLGIPFALK-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
             R       +   ++I F  F   +  +    ++    P +  +    +F ++ I+L M
Sbjct: 296 TGRTSGVAMGVGAGVAIGFAYFII-NAAVQSYGRSGVLPPFVAAWGANLIFVLTGIWLSM 354

Query: 354 IKKK 357
             K+
Sbjct: 355 TVKQ 358


>gi|260891450|ref|ZP_05902713.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
 gi|260858833|gb|EEX73333.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
          Length = 358

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 123/361 (34%), Gaps = 17/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI+    +SF++  +    I  + + +     +       +  ++   Y  P +
Sbjct: 1   MNKLDKYIILNYVKSFILGMMMFFLIFLLAESISLTGWIMDGKLKGHDAIRYLRYGTPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   ++ M +  E+  +  +G S   +    +  + L+S+ +F     
Sbjct: 61  ITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFSFLVSMGVFWLNYD 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQ--GIFIV 176
              K  +  + L + K          ++ +F ++D    +     N N  T++   I   
Sbjct: 121 ALGKSNTKKENLKSLKIDNKEPVKSEKKFIFVKIDKKTVLFSEHVNKNTGTMEHIEILKF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +    +  KIY +  G I+         D  +      +  +     K +    +  +  
Sbjct: 181 EKGFKEISKIYTSPFGKINPKTNEWTFKD--LKEYDDKTNLMKPADTKKFKFIAKMEDVL 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +KA +  +  L            + L   R EF+ R++  L   +  LI +      
Sbjct: 239 ASPVKAKNLTMPELREKVVYFTRVGADSLN-LRIEFYYRISFALSSFVMCLIGLSLG--- 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-----LYLFLFCISSIFL 351
              R  +    + I LS+  G  +     I +       +PI     + L +F I  I L
Sbjct: 295 --SRYVRGGAALNIGLSVIIGYAYYGVSTILRSMAVSGAVPIYAACFIPLIIFLIVGIKL 352

Query: 352 L 352
            
Sbjct: 353 F 353


>gi|261492351|ref|ZP_05988913.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496137|ref|ZP_05992545.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308239|gb|EEY09534.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312034|gb|EEY13175.1| putative inner membrane protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 127/368 (34%), Gaps = 22/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   ++ +  +I+ ++    V   +         +   IP  
Sbjct: 6   MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGRGSYDGLKAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  IETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTALPLVLFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--- 177
             P+     + + + AQ   +    ++  F+  D + +I I+      +L  + I     
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDG-FWAKDGNSFIYINHIKNEKSLDNVLIYQFGE 184

Query: 178 -SRDTQTHKIYYAQSGSIDLDRQAIILND------GEVHRKSPISKDISIMKFKSYTLQT 230
                +   +  A + +   D +  +L+       GE   +     D      + +    
Sbjct: 185 GQNKRELQSVLKAGTANY-SDEKGWVLSKVEKSTVGENQIQQAKQPD------QVWQTSL 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +    + LK    ++S L +          +  + +   F +++ Q +   +  L++I
Sbjct: 238 TPSKLGIVSLKPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAI 296

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSI 349
                   +R       I I +   F  +       +      +  +P+  L    +  I
Sbjct: 297 SFIFGP--LRSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPVPVGALIPSLLCLI 354

Query: 350 FLLMIKKK 357
            +  +  K
Sbjct: 355 IVWWLLSK 362


>gi|325919212|ref|ZP_08181261.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325550312|gb|EGD21117.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 360

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 130/358 (36%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPILMLVVPVVVLIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + ++  + +   L  +F+   +
Sbjct: 121 LGPWASRTAETMLEDANRSVLMAGLESGKFTPLSGGGVVYLTTISADGKGLGKVFMQRQK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQA---IILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
           D +   +  A+ G++  + +A   + L DG       +  + D  +MKF S  +     +
Sbjct: 181 DDRID-VVTAERGAMFFEGKANRYLRLEDGYRIEGPAAGNTLDYRLMKFASNDVALPDRS 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 QVHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAIW 345


>gi|218961269|ref|YP_001741044.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
 gi|167729926|emb|CAO80838.1| putative Permease [Candidatus Cloacamonas acidaminovorans]
          Length = 362

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 131/366 (35%), Gaps = 23/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI+R   R++L+  L  V I  VI ++  +  +  +  +           +P +
Sbjct: 1   MRILDKYIIREFLRTYLIIFLSFVAIFVVIDVIDNLPRLIRNGATAQQATIYYLMRLPYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + +P    +    ++++++++ E + I   G S    + P+  + +++SI + +    
Sbjct: 61  LVLTSPVTVLLTGLFMMSALSKHNESIAIRAAGISIKRAMLPLFGIGLIISIAVAVFGEY 120

Query: 121 IEPKCRSTIKQLSAKAQ---LALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIF 174
           + P   +T K      Q          L+  + ++   + +     ++    N  +  + 
Sbjct: 121 VVPWAETT-KNYVYNVQIKGQQPDDQMLKARIHYQGKANDFYYFGFFDGYKNNLKIIDLT 179

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            +D +  Q  +   A S   D +    IL D ++ R +   +   +  +    L      
Sbjct: 180 RIDFKTKQITEHITASSA--DWNGSRWILKDCDLRRFANGKQVF-MAHYPQTDLVILDVQ 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE---FHKRLTQWLFPV--IFGLIS 289
                ++ + + LS              +L +    E    H +++  L  +  IF  I 
Sbjct: 237 PQDF-IRISQKTLSLNFWQLKEYIGRMKKLGDNAAREIVDLHMKISFPLTNLIVIFFFIP 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCI 346
           I      + +R + +   I + L + F                  NP++        F +
Sbjct: 296 IA----TSNIRSKGRGWIIMLGLVVCFIYLIVVRVCQSLGYNSIINPFWAAWFPNIFFTL 351

Query: 347 SSIFLL 352
             +  L
Sbjct: 352 LGLGFL 357


>gi|149373007|ref|ZP_01891963.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
 gi|149354367|gb|EDM42934.1| hypothetical protein SCB49_11577 [unidentified eubacterium SCB49]
          Length = 515

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 91/234 (38%), Gaps = 16/234 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  I   I+ ++     ++I+LK   +  P ++ +V P    + +  V       
Sbjct: 1   MFIFILQGIWLYISELAGKDLDISIVLKFLWFYSPRIVTLVLPLSILVTSLMVFGGFAER 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ +    +LL I  F   N + P      + L    Q      
Sbjct: 61  YEFAAMKSTGISLQRAMRSLSVFILLLGITAFFFSNNVIPYSEYKWQNLRRNIQQFKPSM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV--DSRDTQTHKIYY-AQSGSIDLDR 198
            +    F ++ D+L IK+++ +  N   L+G+ I   D +    + I   A+ G +  + 
Sbjct: 121 VIAAGQFNQIGDELNIKVAEKSGENGEFLEGVIIHRKDMKKPSNNLIVTIAEKGELTSEE 180

Query: 199 Q----AIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                ++IL +G  ++       K    +      F+ YT+  +    +   + 
Sbjct: 181 GSNTLSLILKNGYDYQELIEKDYKKQHREPYVKTYFEEYTINIDLTALNAKDVD 234



 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 9/159 (5%)

Query: 206 GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA---NDQNLSFLLNPNPNNPNYRP 262
           G +  K   +++I +    +  L     +    ++     N             +   R 
Sbjct: 277 GSIKFKDEKTENIPVSDTVTSILDIYLPHERADIIGMAINNVNGTIQAAKAKKEDSKNRV 336

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
             L  Y    H+++      +I   I    A   A++R+     P+ +++ +     +  
Sbjct: 337 RKLNKYEIALHEKIVLGFACIILFFIG---APLGAIIRKGGMGLPMVVAVVLFLTYHFIG 393

Query: 323 SYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKKKYT 359
            +  +  E +    P L  ++    +  + + +  +  T
Sbjct: 394 IFAKNSAE-DGSIHPFLGTWISTLIMLPLSIWLTYRATT 431


>gi|87310838|ref|ZP_01092964.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
           3645]
 gi|87286353|gb|EAQ78261.1| hypothetical protein DSM3645_18031 [Blastopirellula marina DSM
           3645]
          Length = 389

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 127/394 (32%), Gaps = 43/394 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YIL  I + F ++   +  +  ++ ++Q+             + +I  Y+IP  
Sbjct: 1   MRIITRYILWEILKIFFLALGALTLLIVLVGVVQQ---ALREGLGPGPIARIIPYMIPDA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P      + +V   +    EL  +   G S +  + P   +A++LSI      +I
Sbjct: 58  LRFSIPGTILFASCSVYGRLASGNELAALKAAGVSPLAALWPGYAIALVLSIACVWLNDI 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
                   ++++  ++   + +  L     F    D L I + + +    ++   +  + 
Sbjct: 118 GVSWGSQGVRRVLVQSFEEIAYGMLRTHKSFSS--DKLSILVREVDGRRLMRPQIVAAAT 175

Query: 180 DTQTHKIYYAQSGSIDLDRQ---------AIILNDGEVH-----------------RKSP 213
            T    +  A    +  D           + I +DG                      SP
Sbjct: 176 PTSPQLLISAAEAELHSDENHQLIISLIDSRIESDGSQQGVFEHPGRMDHVVSLSDELSP 235

Query: 214 ISKDIS---------IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
             +  S         +++ +   +QT+          A    L       P + +Y    
Sbjct: 236 EHRSPSKILSSRIPQVLREERQIVQTQKEADIAWSAFAQIATLDAAQRTPPFDISYINSQ 295

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +   R+E  +R       + F L+ +  A K+               L +    +   ++
Sbjct: 296 INRLRTEPWRRWANGFSCLFFVLLGVPLAIKQRN--PDFVTSFFMAFLPVLLVFYPLLAF 353

Query: 325 IIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + + +        +++    +  + L  ++  +
Sbjct: 354 AVDRAKDGAVPPQAVWIGNVALLLVSLYYLRMVW 387


>gi|319902150|ref|YP_004161878.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
 gi|319417181|gb|ADV44292.1| permease YjgP/YjgQ family protein [Bacteroides helcogenes P 36-108]
          Length = 378

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 140/369 (37%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFRRMLRPYMVSAAIIAVITFCLGS 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            I PK    R   +    K + A T   ++      +D  +   I ++   +     F +
Sbjct: 140 YIIPKGSVTRINFEDKYYKPRKANTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  RD Q      A+S + D       I+ D  +     + +  SI K            
Sbjct: 196 DKFRDKQLVSHLTARSITYDTTSVHKWIVKDYMIRAMDGMKE--SITKGDRIDTTLFMEP 253

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 254 ADFLIMKNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
           + K+    +      + I L++SF  +  F  I      N    P++ ++    + +   
Sbjct: 314 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAIWIPNVLYAFVA 369

Query: 352 LMIKKKYTK 360
           L + +K  K
Sbjct: 370 LYLYRKAPK 378


>gi|257465008|ref|ZP_05629379.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
 gi|257450668|gb|EEV24711.1| permease, inner membrane protein yjgQ [Actinobacillus minor 202]
          Length = 360

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 120/365 (32%), Gaps = 19/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   +V +  +I+ ++    V   +    +    +   IP  
Sbjct: 6   MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGKGSYDALLAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +          F+  D + ++ I +      L  + I     
Sbjct: 126 GVPQTEQYARDMRS-VAQSGGSMLSTSGGFWARDGENFVYIRRIGSETQLNNLSIYHFDK 184

Query: 181 TQTHKIYYAQSGSIDLDRQAII-----LNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +   I  A       D   +        +G   ++S               L   S   
Sbjct: 185 KELKSITQAAEAKYTNDNWILKKVEKSTIEGNTIKQSKEKDQPWQTSITPSKLGIVSLKP 244

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            ++ +      + FL            +  + +   F +++ Q +   +  L++I     
Sbjct: 245 ESLSITGLADYVGFL--------KETGQDPKRFEITFWRKVYQPISMAVMMLLAISFIFG 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY---IPILYLFLFCISSIFLL 352
              +R       I I +   F  +       +      +    I  L   L C+S ++ L
Sbjct: 297 P--LRSSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWL 354

Query: 353 MIKKK 357
           + KK+
Sbjct: 355 LTKKR 359


>gi|94984157|ref|YP_603521.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94554438|gb|ABF44352.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 367

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 134/373 (35%), Gaps = 21/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE Y+L  I    + +   ++ +  +  +   I  + +   +  ++ ++    +P  
Sbjct: 1   MKRFERYVLAEILPPLVGALGVVIVLLLLALLEGVIAPLLAKGANPLLVARLVALNVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P          L+ +  ++E+     +G     L +PVL LA L+++  F    +
Sbjct: 61  LAQGLPIALMFAALLGLSRLAADSEIKAALASGVPTSRLFRPVLLLAALVTLGTFAINEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALT------FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           +  + +  ++ +  +  L             + NL  R   +  I + +  P   L+ + 
Sbjct: 121 LVTRAKVQVQSVQREIVLDNPRVIGLGTRDGQGNLVLRDALNRAISVGEALPGGELRDLR 180

Query: 175 IVDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           IV  +     + +  A+ G +      + L DG+          ++++ F   +L  +  
Sbjct: 181 IVTMQAGLPPREVITARRGRLKPGSNVLELEDGQRITFQDARP-VTVLTFARGSLPVQDV 239

Query: 234 NSS----TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            +S       LK     L  LL         + +    + +  H++  + L  +      
Sbjct: 240 QASFEGGDATLKPIYLPLRELLARMQTYRQQKVQAPADFTA-LHRKFAEPLAALALAFFV 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL----FLFC 345
           +  A       +  +   +  +L +SF  +  +S     + +N    P+L       +  
Sbjct: 299 VSLA---VFAFRSGQNLGLVWALLLSFAYYATWSVF-RVMGENGAVPPVLAAYAPDLIAV 354

Query: 346 ISSIFLLMIKKKY 358
           ++ + LL    + 
Sbjct: 355 LAGLLLLWRASRR 367


>gi|145631589|ref|ZP_01787355.1| predicted permease [Haemophilus influenzae R3021]
 gi|144982789|gb|EDJ90315.1| predicted permease [Haemophilus influenzae R3021]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 137/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|37681089|ref|NP_935698.1| permease [Vibrio vulnificus YJ016]
 gi|320155253|ref|YP_004187632.1| putative Permease [Vibrio vulnificus MO6-24/O]
 gi|326423844|ref|NP_760390.2| lipopolysaccharide ABC transporter permease [Vibrio vulnificus
           CMCP6]
 gi|37199839|dbj|BAC95669.1| predicted permease [Vibrio vulnificus YJ016]
 gi|319930565|gb|ADV85429.1| predicted Permease [Vibrio vulnificus MO6-24/O]
 gi|319999214|gb|AAO09917.2| putative membrane protein [Vibrio vulnificus CMCP6]
          Length = 357

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 137/362 (37%), Gaps = 17/362 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIVATTSLVLVTFVGLSGIIKYVEQLRKVGKGTYDLLHALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGFSKLDIGVSVLKTAVPLMLVVMALGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   + L + A    +   +   ++ +  +D +I I K + +           ++ 
Sbjct: 123 APDAQKMARDLRSFALSGGSIVSVRSGVWAKDAND-FIFIGKVDEDKLYGLNMWKFDQNK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-----TLQTESANSS 236
           +   + +A+      D + ++      + +    +D  ++   S               +
Sbjct: 182 KLQSVIFAEEVDYQQDNRWLM-----RYVQITDMQDEKVISKHSLEQMEWETSLAPDKLA 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAAD 294
            + +K  + +LS L +          +    Y   F ++LTQ +   +  L++   V   
Sbjct: 237 VVTVKPEELSLSGLYD-YVTYLKASEQDASRYELAFWRKLTQPISIAVMMLMALSFVFGP 295

Query: 295 KRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            R++    + I  +    +      F+G   +++ I   P +  +    +F I ++ LL 
Sbjct: 296 LRSVTMGARVISGVIAGFAFYISSEFFGPLTLVYGIP--PVFGAVAPSIVFFIVAVMLLN 353

Query: 354 IK 355
            K
Sbjct: 354 RK 355


>gi|326799922|ref|YP_004317741.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
 gi|326550686|gb|ADZ79071.1| permease YjgP/YjgQ family protein [Sphingobacterium sp. 21]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 124/345 (35%), Gaps = 7/345 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M   + YI++    +F+ +      +A +  I +R++    +   L+ I+ +     IP 
Sbjct: 1   MNIIDKYIIKKYLGTFVFTMAIFTVVAVIFDISERMDDFLKNHAPLSKIVFEYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +        M   TE++ I N G S    ++P    A ++ +   I   
Sbjct: 61  YLNFLSPLINFIAVIFFTAKMADQTEIVPILNGGMSFRRFLRPYFIAASIICLVTLIFNI 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS- 178
            I P+    +K       +    +  + +   ++D + ++ I  ++ +  +   FI+++ 
Sbjct: 121 YIIPRTN-KLKIGFENIYVKPIDNNSKSSTHMQIDKNSFVYIDNFDNDRKVGYNFILETF 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  +  +   A   + D  +    + +  +   + +++ +     K  TL     +    
Sbjct: 180 KGQELQEKLIADRITWDSVKNNWKIENYTIRIVNGLNEKMIKGTSKDTTLDMSPRDFEIR 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L              +   + E +KR    ++P    +++++     + 
Sbjct: 240 DNVFMAMTTQELNENIEKEKIRGTGRMTDLKLEKYKRF---IYPFSAYILTLMGVSLSSK 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             +      + + +++SF  +  F    +         P+L  F+
Sbjct: 297 KVRGGIGLSLGVGIALSF-TYILFIQFANMFSLKGGLPPLLAAFI 340


>gi|254468135|ref|ZP_05081541.1| permease YjgP/YjgQ [beta proteobacterium KB13]
 gi|207086945|gb|EDZ64228.1| permease YjgP/YjgQ [beta proteobacterium KB13]
          Length = 368

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 123/342 (35%), Gaps = 15/342 (4%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           L + L +  I    + +    L S      + +L I  + +   LP++      +     
Sbjct: 16  LSTILILSGIVVAQRGVVVFRLASKGIIPNDSILTILVFSLIKYLPILLTLTLFLTILLT 75

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L+   R++E++I  ++G    + I+P+LF ++ + + +      + P      ++  A  
Sbjct: 76  LSRWFRDSEMMIWFSSGLGLTSFIRPILFFSLPIILLIGFLSLYLSPWATQKSEEYKAGL 135

Query: 137 QLALTFSYLEENLFFRL-DDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSI 194
           +     + +    F      D    +  +    + ++ +F+   ++ +   I   +   +
Sbjct: 136 KNRDELATISPGSFKESKSKDRVFYVEGFGDLGSKVKNVFVQSEQNGKLGIIVSNEGSRV 195

Query: 195 DLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
                  + I+L  G+ +  +  + + + +KF  Y    E      I +   +   + LL
Sbjct: 196 STSTDKDEYIVLKKGKRYEVNHENNNFTEIKFNDYGFLVERKLPPIIDVNQVEAMPTALL 255

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
                             +EF  R++  L  ++  +++I  +       +   I    + 
Sbjct: 256 ---------LLTNTNREIAEFVWRVSLPLSGIVLIILAIPLSFINPRSGRSANIIIAIMI 306

Query: 312 LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
            +I   +       I+  + NPY    + + +  IS    LM
Sbjct: 307 FAIYNNLMGVTQSYINLGKLNPYVGGAI-VHVLIISIASYLM 347


>gi|120599781|ref|YP_964355.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|146292283|ref|YP_001182707.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|120559874|gb|ABM25801.1| permease YjgP/YjgQ family protein [Shewanella sp. W3-18-1]
 gi|145563973|gb|ABP74908.1| permease YjgP/YjgQ family protein [Shewanella putrefaciens CN-32]
 gi|319425583|gb|ADV53657.1| inner membrane component of lipopolysaccharide transporter, LptG
           [Shewanella putrefaciens 200]
          Length = 352

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 132/364 (36%), Gaps = 21/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R I  +  +  L +  ++ +I+ + ++ LV   T ++        +LIP  
Sbjct: 1   MKILDLYIARVILSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGLSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P       +L A  +L+           +  D DL++ I +      L  I +   + 
Sbjct: 121 GAPVAEQKANELQA-IKLSGGSLIKSHRGIWAKDGDLFVNIGEVENITKLNNITLYKFNS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  K+ +A+      D  +  L D +    +     +  ++   +         S + 
Sbjct: 180 ELKLTKVVHAERAVFTRD--SWRLFDVKRTDLTYDQVTLEHLEEDIWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  LL    +      +    Y     ++L Q +   +  L+++         
Sbjct: 238 VKPEALSIQGLLG-YLDYLKTNSQDPSRYELALGRKLMQPVTVGVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHK--------IEQNPYYIPILYLFLFCISSIFL 351
                +  + +   +  GV  GFS+ I          + + P Y+  +   L      F 
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGIAFY 348

Query: 352 LMIK 355
            + +
Sbjct: 349 FIRR 352


>gi|301170458|emb|CBW30065.1| conserved inner membrane protein [Haemophilus influenzae 10810]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 138/362 (38%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +   ++I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKEEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|309972901|gb|ADO96102.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
           R2846]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 138/362 (38%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA  + +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSSGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|254360523|ref|ZP_04976672.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
 gi|153091063|gb|EDN73068.1| possible inner membrane protein [Mannheimia haemolytica PHL213]
          Length = 365

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 128/368 (34%), Gaps = 22/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   ++ +  +I+ ++    V   +         +   IP  
Sbjct: 6   MNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDVGRGSYDGLKAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L IF  I    
Sbjct: 66  IETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRFRIGLAVMKTALPLVIFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD--- 177
             P+     + + + AQ   +    ++  F+  D + +I I+      +L  + I     
Sbjct: 126 GVPQTEQFARNMRSIAQSGGSMLATKDG-FWAKDGNSFIYINHIKNEKSLDNVLIYQFGE 184

Query: 178 -SRDTQTHKIYYAQSGSIDLDRQAIILND------GEVHRKSPISKDISIMKFKSYTLQT 230
                +   +  A++ +   D +  +L+       GE   +     D      + +    
Sbjct: 185 GQNKRELQSVLKARTANY-SDEKGWVLSKVEKSTVGENQIQQAKQPD------QVWQTSL 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             +    + LK    ++S L +          +  + +   F +++ Q +   +  L++I
Sbjct: 238 TPSKLGIVSLKPESLSISGLAD-YVGFLKDTGQDPKRFEITFWRKVFQPISMAVMMLLAI 296

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSI 349
                   +R       I I +   F  +       +      +  IP+  L    +  I
Sbjct: 297 SFIFGP--LRSSTMGAKIVIGIVAGFMFYVANIVFGNLSLIATWLPIPVGALIPSLLCLI 354

Query: 350 FLLMIKKK 357
            +  +  K
Sbjct: 355 IVWWLLSK 362


>gi|330811513|ref|YP_004355975.1| permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
 gi|327379621|gb|AEA70971.1| Putative permease [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 353

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 125/362 (34%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  ++ V S T +L  +        P  
Sbjct: 1   MVKLDRYIGSSVFMAILAVLGIILGLATLFAFIDEMSDV-SDTYTLTDVASYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---IVD 177
           I P   +T +   + AQ        +  L+     D +I I+   PN  L G+      D
Sbjct: 120 IAPATENTAQANRSLAQGGGDAQSAKHGLW-HRQGDEFIHINSVQPNGILYGVTRYRFDD 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            R   +    +A+  +   D     L+D           ++     + + +       ST
Sbjct: 179 QRHMLSSS--FAKRANFAEDH--WQLSDVTTTLFHDKRTEVVAAPQERWDVSISPQLLST 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V+     +++ L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 235 VVMAPESLSITGL-WGYIHYLADQGLNNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPL 293

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R++   ++    +F  + + F        +        +      L    I ++  L + 
Sbjct: 294 RSVTLGQR----VFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPAGICALAGLWLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|291614864|ref|YP_003525021.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584976|gb|ADE12634.1| permease YjgP/YjgQ family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 128/365 (35%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ R I  S  +    ++ +  ++ ++  +N +      L  +L      IP  
Sbjct: 1   MRLLTRYLRREIYASVALVFAALIMLFALLDLVNELNSMGRGDYRLGYVLLFVTLTIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L  M  ++EL +  ++G S   +I  ++ + + L +  F+   +
Sbjct: 61  IYELFPVAVLIGTIFALVQMAASSELTVYRSSGVSLKQMIVMLVKIGLPLVVLCFLFGEV 120

Query: 121 IEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P      ++L  KAQ   ++       ++ + D+  +I +    P+ +L  + I +  
Sbjct: 121 IAPPSERMAQELRMKAQNLKVSVKEFRSGVWAK-DERSFINVRSMLPDTSLLDVSIYEFD 179

Query: 180 DT-QTHKIYYAQSG-SIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSS 236
            T     I  A+    +D DR  +   DG      S             +         S
Sbjct: 180 ATYHLRSITSAEHASYLDEDRWQL---DGVRQTLFSKQGATTDNRPRAEWHTSLNPDILS 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +++     +   L     +      +    Y      +L   L  ++  L+++  +  +
Sbjct: 237 VLLVVPEQMSAWNLYQYTMH-LRENHQKTSRYEIAMWNKLVYPLAVLVMMLLALPFSAYQ 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSIFLLM 353
              R+      IF+ + +     +      +    N   P        +LF   ++ +L 
Sbjct: 296 R--REGGISGKIFMGIVLGLSFHFVGRLFANVGALNDWSPLLSATAMSWLFLALAMGMLW 353

Query: 354 IKKKY 358
             ++ 
Sbjct: 354 RTERR 358


>gi|237744435|ref|ZP_04574916.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229431664|gb|EEO41876.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 363

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 124/368 (33%), Gaps = 21/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++Y+ +   + FLM+ +  + +  + Q  + I  ++        +L     L+P +
Sbjct: 2   IKKMDIYVSKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLVGGEILDYILNLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYN-PNNTLQGI---- 173
           I  K  + I      +   +L     +EN  F    D     + + N      + I    
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNADGYLYLMGEINRETGVAENIEVVK 181

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           F  +    +   I  A+S   D +    I ++  ++           +    Y       
Sbjct: 182 FETEISKPKE--IITAKSAKFDTEENKWIFSNVNIYNVDTK----ETITKTEYKSDLYKD 235

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISI 290
           + S+ +  + +      +         +    E    Y SE  K+ +      I   I +
Sbjct: 236 DPSSFIRASAEDPRMLTIKELKKTIKEQKSIGEDTRIYLSELAKKYSFPFASFIVAFIGL 295

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISS 348
                   VR  +    + I +   +G +   S     +  N    P +  ++       
Sbjct: 296 SV--SSKYVRGGRTTMNLVICVIAGYGYYLV-SGAFEAMSLNGILNPFIASWIPNILYLI 352

Query: 349 IFLLMIKK 356
           I +  + +
Sbjct: 353 IGIYFMNR 360


>gi|218778208|ref|YP_002429526.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759592|gb|ACL02058.1| permease YjgP/YjgQ family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 353

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 125/347 (36%), Gaps = 17/347 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI R + ++ L     +V I   +   ++I+   ++   L  +       IP V
Sbjct: 1   MKIISKYIARALFKNLLTILFAVVVIYVAVDFFEKIDDFMAAKIPLLTVGYFFLLRIPYV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +    V+  M R+ E++   + G S  +L+KP+  + ++ S+FLF    I
Sbjct: 61  AAQVLPVGVLLSAMVVIGLMARHNEIIAYASGGGSSFSLLKPIAVMGVIASLFLFAFNEI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P   +   Q+  +              F R  + L  ++ KY P  +T + I +    
Sbjct: 121 IVPAAAAEANQIWYQDVRKEGDVGTRTTWFHR--NGLIGRVDKYIPETHTARDITLN-YY 177

Query: 180 DTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D     I    A   +I        L +      S  + DI   K     +   +     
Sbjct: 178 DPSFKLIKRIDADDATI--SGTVWTLRNAM-ESVSGRASDIRQHKELKVEMDFTADQLHD 234

Query: 238 IVLKANDQNLSFLLN--PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            V ++++ +L  L        +  Y+      +R +   +++  L  +I  ++    A  
Sbjct: 235 RVKRSDEMSLVQLKEHIHKIESEGYKAV---RFRVDLASKISFPLVCLIMSVLG--GAMA 289

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
               R       I + + ++F  +W    +   +     Y PI   +
Sbjct: 290 LRGKRGEGLAVNIVMGMGLAFA-YWVVHSLCLSLGYAGMYSPIFSAW 335


>gi|152978628|ref|YP_001344257.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
 gi|150840351|gb|ABR74322.1| permease YjgP/YjgQ family protein [Actinobacillus succinogenes
           130Z]
          Length = 354

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 143/360 (39%), Gaps = 11/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E YI + I  +   + L +V ++ +I+ +++   V   T      +  +   IP  
Sbjct: 1   MNTLERYIGKSILGTIFATLLTLVGLSAIIKFVEQFRSVGKGTYDSLQAVLYTILTIPKD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR+ +   V+  AI L +   +    
Sbjct: 61  VETFFPMAALLGALIALGNLASRSELIVMQSAGFSRLKIGIAVMKTAIPLVLITMVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + AKA    +   ++ +++ +  +D +I + +   +  L+ ++I    +
Sbjct: 121 GIPQTEQYARDMRAKAISGGSLMSVKNSVWAKDGND-FIFVRQVREDANLRDVYIYHFDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            Q  ++ +A S + +  +  +  LN  ++  +   +K+    ++K+            + 
Sbjct: 180 RQLQRLSHANSATYERGKWQLHQLNVSDIQAEQIFTKNYVSQEWKT---SLTPDKLGIVS 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L +      +   +  + +   + ++L Q +   +  ++++        +
Sbjct: 237 LRPTSLSISGL-SEYIAFLHQTGQDSKKFELTYWRKLFQPISVGVMMMLALSFIFGP--L 293

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I   +   F  +     F  +       P    ++   LF + + +LL  K+
Sbjct: 294 RSVTAGARIVTGICFGFLFYVINEIFGPLSLVYNVTPIVGALMPSILFLVITWWLLSRKR 353


>gi|86141356|ref|ZP_01059902.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
 gi|85831915|gb|EAQ50370.1| putative membrane protein [Leeuwenhoekiella blandensis MED217]
          Length = 358

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 139/363 (38%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L  + I   + + ++I+ + ++      +           
Sbjct: 1   MKILDWYILKRYLGTFITMLLLFIPIGITVNLAEKIDKMLANEVPFVEIALYYLDFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +  +I    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAYILGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P       + + +       +    N++ +++D+ YI +S++ P++ +   F +    
Sbjct: 121 LAPAASQGFNEFTYEYLKNGKAARETRNVYRQINDNDYIYVSRFTPSSKMGQNFTLEHFE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTI 238
           +        A+S     +     L +G   R      DI I + K       +  + + +
Sbjct: 181 NNTLQYKIQARSIVYRPEDTLYRL-NGYKKRIVGKEGDILISEPKLDTLFSFDLEDLTPL 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A       L              +  Y    +KR +  +   I  +I++      ++
Sbjct: 240 EYIAETLTTPRLREFIDKERARGSSAINRYEVVLYKRYSLPVSAYILTIIAVAV---SSM 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMI 354
            R+      + + +S++F +F  F  +   I +   + P++ ++    LF I +I+LL  
Sbjct: 297 KRRGGMGINLALGISLAF-IFIFFDKVFGTISEQSDFSPMVAVWLPNVLFGILAIYLLNR 355

Query: 355 KKK 357
            K+
Sbjct: 356 AKR 358


>gi|239993539|ref|ZP_04714063.1| predicted permease [Alteromonas macleodii ATCC 27126]
          Length = 353

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 133/355 (37%), Gaps = 5/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  +      + +        +   L
Sbjct: 3   KILDLYIARTLLGTITVTLSVLIGLSALIKFVEQLRKIGEGDYDMLVAFIYVLLSLARDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +   +++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILLVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P   +  KQ+  +A       +  + L +  D D ++ I +    ++L+ + I   + D
Sbjct: 123 TPYSETKAKQIRTEAISG-GSLFSSDKLVWAKDGDRFVSIGQVLSQDSLKDVSIFSFNPD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I +A++G+ D D     L+D EV + +  +  +       +           + +
Sbjct: 182 LSLESITHAKNGAFDGD--GWWLSDVEVTKFTETNVTVDENNRMRWNSTLTPDKLGIVAV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ LL+   N      +    Y+    +++ Q +   +  L+++          
Sbjct: 240 KPEALSITGLLD-YVNYLENNDQDPSRYQLALWRKVFQPISVGVMLLMALSFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +     F +       +  + Q P ++  L   L   +   +++ +
Sbjct: 299 TMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAIAGVMLRR 353


>gi|124009520|ref|ZP_01694195.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
 gi|123984866|gb|EAY24834.1| putative permease, YjgP/YjgQ family [Microscilla marina ATCC 23134]
          Length = 371

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 145/374 (38%), Gaps = 25/374 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YIL+    +F    + ++ I  +I I ++I   +   +++  I  K     IP 
Sbjct: 2   LKRLDKYILKKFLVTFFFVVIILISIIVIIDITEKIGDFNKMDQTVWQIFTKYYLNFIPY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T  V   +  +TE++ I ++G S   ++ P L  + L+++  F    
Sbjct: 62  WANSLSPILIFIATVFVTARLATHTEIIAILSSGVSFKRMLVPYLLGSSLIAVLTFYLIG 121

Query: 120 IIEPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN------TLQG 172
            + PK     +K  +   +    F+    N+  ++  + +  I  Y+  +      TL+ 
Sbjct: 122 WVIPKANRVRLKFENTHIKDKFYFTDR--NVHLKIAPNTFAYIESYDNTSHVGYKFTLEN 179

Query: 173 I--FIVD--SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYT 227
           I  F  D   +  + +     +    D DR+  ++ + ++   +     +  I   +S  
Sbjct: 180 ISGFEYDGKRQQKKLNSKVECRRILWDKDRKKWVMENYKITEFNRGDSLNYKITYGQSLD 239

Query: 228 --LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
             +  + ++  +  +         L              LETY  E ++R+      +I 
Sbjct: 240 TLMNLKPSDFESKYMFNEQLTSDQLEAYIAELKQRGVGKLETYLVERYERMAYPFAVIIL 299

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFL- 343
            +I ++        R+ ++   + I++      ++     +   I +N    P++  ++ 
Sbjct: 300 TVIGVIV-----SSRKTREGAGLQIAVGFGLAFIYVMLIMVSRSIGKNGELPPLVAAWMP 354

Query: 344 -FCISSIFLLMIKK 356
               + I L+M K+
Sbjct: 355 NILFALIGLIMYKR 368


>gi|313206715|ref|YP_004045892.1| permease yjgp/yjgq family protein [Riemerella anatipestifer DSM
           15868]
 gi|312446031|gb|ADQ82386.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer DSM
           15868]
 gi|315023785|gb|EFT36787.1| hypothetical protein RAYM_00180 [Riemerella anatipestifer RA-YM]
 gi|325335845|gb|ADZ12119.1| permease YjgP/YjgQ family protein [Riemerella anatipestifer RA-GD]
          Length = 364

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 126/378 (33%), Gaps = 38/378 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILL-KISGYLIPT 59
           MK  + YI++    + +   + +  I  V+ I  +   +  S  ++   L     + +  
Sbjct: 1   MKIIDAYIIKKFLGTLVFMLVLLSIIVIVVDIQAKAPNIEKSGYTVGDFLLHFYPFWMIY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++         +      + M  NTE++ I ++G S     +P   +A+ +++F+ +  +
Sbjct: 61  LILTFMSILVFISVIYFSSRMADNTEIVAIVSSGASFHRFARPYFMVAVGIALFMLMLNH 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDS 178
              P       +L              E+   + + +  + IS          +FI    
Sbjct: 121 FALPWANVKKNELM----------VFTESQVRQEEKNRSVAISAQMSPTEY--VFIGSYH 168

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY--------TLQT 230
           R       Y  Q    D + + I    G+        +  SI  F            L  
Sbjct: 169 RKEARGSDYLYQK--FDKNNKLIHQIRGDYVSWDEKKQAFSITSFYEKKAGKNETEKLSN 226

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRP----------ELLETYRSEFHKRLTQWL 280
            +    +      +     LL  N   P                + TY +E H R +  +
Sbjct: 227 GTQTYQSFGYPPEELFPDELLGENKTTPELVKFINREKIKGNGNINTYLNELHARTSMPV 286

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPIL 339
             +I  ++ +  A   +  ++      + + ++++F   + F  + +    +       +
Sbjct: 287 SIIILTILGLALA---SEKKRGGIGVNLAVGIALAFVFIFSFEALKVVSSSKILTPFVAM 343

Query: 340 YLFLFCISSIFLLMIKKK 357
           ++  F  + + LL+  ++
Sbjct: 344 WMPNFVFAPLALLLYFRR 361


>gi|298207835|ref|YP_003716014.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
           HTCC2559]
 gi|83850473|gb|EAP88341.1| hypothetical protein CA2559_06260 [Croceibacter atlanticus
           HTCC2559]
          Length = 456

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 28  WVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
            ++Q +   I+ ++       I+LK+  ++ P ++P+V P    + +     +   N E 
Sbjct: 1   MILQSVWLYISELAGRELDGFIILKLLSFVAPKLIPLVLPLTILVTSIMTFGNFAENYEF 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
             + ++G S    ++ ++     LSI  F   N + P+       L          + + 
Sbjct: 61  AAMKSSGISLQRAMRGLIIFIAALSITAFFFANNVIPRAEFEFVNLRKNIAKLKPAAAIS 120

Query: 147 ENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRD--TQTHKIYYAQSGSIDLDRQ--- 199
           E +F  + D + IK+ + + +    L  + I    +     + +  A  G +        
Sbjct: 121 EGMFNEIGD-INIKVGEKSGDRGQYLTDVIIHKKNEKRAGNYTVIKANKGELISSEGSDV 179

Query: 200 -AIILNDG----EVHRKSP---ISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +++L DG    E+    P     K  +   FK Y +  + +  + + ++  
Sbjct: 180 LSLVLRDGNYYDEIQSNDPKEIQKKPFAKSYFKEYAINVDLSTLNNVDMEDR 231


>gi|148827126|ref|YP_001291879.1| permease [Haemophilus influenzae PittGG]
 gi|148718368|gb|ABQ99495.1| predicted permease [Haemophilus influenzae PittGG]
          Length = 358

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 137/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|332142604|ref|YP_004428342.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552626|gb|AEA99344.1| lipopolysaccharide ABC transporter permease [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 353

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 132/355 (37%), Gaps = 5/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R +  +  ++   ++ ++ +I+ ++++  +      +          +P  L
Sbjct: 3   KILDLYIARTLLSTITVTLSVLIGLSALIKFVEQLRKIGEGDYDMLAAFIYVLLSLPRDL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++   G SR  +I   +   +++ + +      +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELVVMQAAGMSRWNIINSAMKSTLVMILAVMAVGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P   +  KQL  +A       +  + L +  D D ++ I +    ++L+ + I + + D
Sbjct: 123 TPFSETKAKQLRTEAISG-GSLFSSDKLVWAKDGDRFVSIGQVISQDSLKDVSIFNFNSD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I YA++ + D D     L++ EV + +     +       +           + +
Sbjct: 182 LSLQSITYAKNSTYDGD--GWWLSNVEVTQFTETQVSVDDTDRMRWNSTLTPDKLGIVAV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ LL+   N  +   +    Y     +++ Q +   +  L+++          
Sbjct: 240 KPEALSITGLLD-YVNYLDNNDQDPSRYELALWRKIFQPISVGVMLLMALSFIFGPLRSV 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  + +     F +       +  + Q P ++  L   L   +   +++ +
Sbjct: 299 TMGARVIMGVLTGFGFFILNEVFGPVSLVYQLPPFLGALLPSLLFAAVAGVMLRR 353


>gi|258625834|ref|ZP_05720713.1| Predicted permease [Vibrio mimicus VM603]
 gi|258582072|gb|EEW06942.1| Predicted permease [Vibrio mimicus VM603]
          Length = 356

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 134/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I K +    +           
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + +A+      + +  ++ D ++ R  + I      +    +         + + +
Sbjct: 182 KLSTVIFAEQVYYVGNNE-WLMKDAQLTRMVNEIEISKETLPEYRWRTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +   +      +    Y   F +++TQ +   +  L++   +    R++
Sbjct: 241 KPEELSLSGLSD-YVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|300114326|ref|YP_003760901.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
 gi|299540263|gb|ADJ28580.1| permease YjgP/YjgQ family protein [Nitrosococcus watsonii C-113]
          Length = 354

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 114/355 (32%), Gaps = 4/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +    L+    ++ +   +Q +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYIAKAVISYTLLVLFILIALYTFLQFITELEDVGEGNYGVMGALRYTTYSIPQH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  +   +EL+ +   G S   +    L   ++  I   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGYLAGQSELVAMRAAGFSVGRITLSALATGMIFVIATVLMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +    +L + A+        E+  F+  + + +  + +  PN   + I I +  D
Sbjct: 121 VAPPAQQAANKLRSLAKTGHLSEDGEQG-FWSRNGNNFNHVGRVLPNGQYEYIEIFEF-D 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q       Q+      +    L D      S        ++   +           +++
Sbjct: 179 NQRRLRIVTQATRAIYHKDGWHLYDVTQRLISTEGIITRRLEEALWESGLSPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +   L            +  E Y+  F  ++      +I   ++I          
Sbjct: 239 DPQQLSAWGLYR-YIGYLQQSKQAAEQYQQAFWSKIVAPFSTLIMMFLAIPFIFGPLRSV 297

Query: 301 QRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              +   +   + I F +F   F+ +    + +P+        L     + +L  
Sbjct: 298 SVGQRILVGALVGIGFFLFNRLFNQLGLVFDFSPWLGAAFPSLLCLALGVVMLRR 352


>gi|229845238|ref|ZP_04465371.1| predicted permease [Haemophilus influenzae 6P18H1]
 gi|229811833|gb|EEP47529.1| predicted permease [Haemophilus influenzae 6P18H1]
          Length = 358

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 132/360 (36%), Gaps = 7/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ VI+ +++   V   T  +   +  +G  +P  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAVIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRFKIGMAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ +  ++ ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAKDGNN-FVFVRRVTDDAKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                ++ ++   S   D     L        +      +    +++           + 
Sbjct: 181 QHNLTELKHSNQASYSEDEAKWTLRQVNHSTITKDEIITTNHLLETWETSLTPDKLGAVS 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L +   +      + +  +   F +++ Q +   +  L+++        +
Sbjct: 241 LRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPISVGVMMLLALSFIFG--SL 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYII--HKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           R       I   + + F  +     +     +   P     L   L  I  I+ L+  K+
Sbjct: 298 RSVTAGARIVTGICVGFLFYVVNEILGQMSVVYGIPAIFGALIPSLLFIVMIWWLLSHKR 357


>gi|330938933|gb|EGH42432.1| permease YjgP/YjgQ [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 302

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 10/299 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +  +   +  +  + S T +L   L       P  
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLVSMFAFIDEMRDI-SDTYTLTDALSFVMLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++  ++EL I+   G S   ++  V+   +LL I   +    
Sbjct: 60  VYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FIVD 177
           + P   +  +   + AQ +         L+     D +I I+   PN  + G+      D
Sbjct: 120 VAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYHFDD 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            R   T    +A+  +   D     L D      +  S ++     + + +       ST
Sbjct: 179 QRHMLTSS--FAKEANFKTD--YWELKDVTTTHFNDGSTEVVNTPVERWDVALSPQLLST 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +++     ++S L +   +    +      Y   F  ++ Q    V   L++I      
Sbjct: 235 VIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGP 292


>gi|260582801|ref|ZP_05850587.1| permease [Haemophilus influenzae NT127]
 gi|260094127|gb|EEW78029.1| permease [Haemophilus influenzae NT127]
          Length = 358

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 138/362 (38%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  + +  +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTIMKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|323137915|ref|ZP_08072990.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
 gi|322396918|gb|EFX99444.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
          Length = 388

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 103/287 (35%), Gaps = 14/287 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFI-VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ + +G   L+  L + V +     + Q           +  L+ I+    PTV
Sbjct: 3   RLLFSYLFKRVGFGVLIVQLALSVPVVLSYLLYQLPPAAVRGGLVIPALVGIT----PTV 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +  P    + T    + M     + ++     S  ++ +P L LA  + +  +   N 
Sbjct: 59  AYVTLPMAVGVATALEFSRMASEGMIAVLYALRLSAWSICRPALTLAAGIVVLGYALANF 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSR 179
           I P   + ++ +    + +L    L+   F+  D+ +  + I ++   +    +F+    
Sbjct: 119 IAPHYATNMQDVLNVVRNSLNHRMLDAAHFYTFDNGVKTLYIERWVTPDLAANLFVRQLS 178

Query: 180 -DTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +    +   A       +   +I  L++G +  +S  S D+ I  F  Y +      S 
Sbjct: 179 IEKMQEETITAARAEFRRNESGVIVALSNGSIQTRSLSSGDVRIANFDEYAMALPMQGSG 238

Query: 237 TIVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            +  +   + +  L       N  +    P  L  +R+E  KR    
Sbjct: 239 GLPDR-GWRGVYELSAGAFLANYESAKGDPRQLGEWRAEAAKRFGVP 284


>gi|66044344|ref|YP_234185.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|63255051|gb|AAY36147.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae B728a]
 gi|330969233|gb|EGH69299.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 353

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 111/324 (34%), Gaps = 16/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R  QT    +A+  +   D     L D      +    ++     + + +       
Sbjct: 177 DDQRHMQTSS--FAKEANFKTD--YWELKDVTTTHFNDGRTEVINTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAA 293
           ST+++     ++S L +   +    +      Y   F  ++ Q      ++   IS +  
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFG 317
             R++   ++    + +  +    
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRII 315


>gi|145635440|ref|ZP_01791141.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145641037|ref|ZP_01796618.1| predicted permease [Haemophilus influenzae R3021]
 gi|145267314|gb|EDK07317.1| predicted permease [Haemophilus influenzae PittAA]
 gi|145274198|gb|EDK14063.1| predicted permease [Haemophilus influenzae 22.4-21]
          Length = 358

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 137/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  +P  
Sbjct: 2   INTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|262376977|ref|ZP_06070203.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
 gi|262308015|gb|EEY89152.1| permease YjgP/YjgQ family protein [Acinetobacter lwoffii SH145]
          Length = 356

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 121/361 (33%), Gaps = 24/361 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L +   +  +  +   L  +  +          LK   +  P  L
Sbjct: 5   RIVAKHVTQTTALAMLGATAVLAGLQVLFTYLGELGSL-KDGYGAWDALKYVLWGAPNYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPISALIGAVLGLGTLASNSELIVMRSVGVSLWRIVGWVIRSALLLVVLSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      K + +    +      E   ++  +   +I I   N    L+ + ++D  ++
Sbjct: 124 IPYTNEQAKSVKS---ASKAAQLGEVRGYWTREGQRFIYIDYANSQGQLKNVQMLDFDQN 180

Query: 181 TQTHKIYYAQSGSIDLDR--------QAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            +      A  G    D         Q  IL +G         + +         L  + 
Sbjct: 181 YRLRGTLQADQGQFVKDGSWTLDNTEQFDILQNGNATLVKQQQQPL--------ALALQP 232

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--I 290
                + +   D + S L++       Y  ++ +TY+  F ++L      +   +I+   
Sbjct: 233 KYVHMVTIDPEDLSPSQLVSFMSYMHEYS-QVPKTYQLAFWQKLGSPFALIALVVIACSF 291

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +    R      + +  +F  L   +   +     +       +++ I  L +F I    
Sbjct: 292 IFGPLRQQSMGFRLVIALFAGLGFFYLQDFLGYASLIYAPSPAWFVFIPILIMFGIGGYL 351

Query: 351 L 351
           L
Sbjct: 352 L 352


>gi|260779400|ref|ZP_05888291.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604490|gb|EEX30790.1| putative membrane protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 356

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 133/358 (37%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +     V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLATFVGLSAIIKYVEQLRKVGQGSYDLLQALFYVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLASSSELVVMQAAGYSKLDIGLSVLKTAVPLMVLVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A          +   ++ R  +D +I I K   +          + D 
Sbjct: 123 APQAQKMARDLRAFTTSGGAIMSVRTGVWARDAND-FIFIGKVEDDKLYGLSMWRYNDDK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVL 240
           Q   + +A       D    ++ D ++   +   +   + +    +T        + + +
Sbjct: 182 QLESVVHAAEVDYLSDNT-WVMKDVQLTEMADEVEITKTSLPEYRWTTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +          +    Y     +++TQ     +  L++   +    R++
Sbjct: 241 KPEELSLSGLYD-YVTYLKASEQDASRYELALWRKVTQPFSIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
               + +  +    +      F+G   +++ I   P +  ++   +F   ++ LL  K
Sbjct: 300 TMGARILSGVVAGFTFYISSEFFGPLSLVYSIP--PVFGAVMPSIVFLTVALALLRRK 355


>gi|68250306|ref|YP_249418.1| permease [Haemophilus influenzae 86-028NP]
 gi|145633638|ref|ZP_01789365.1| predicted permease [Haemophilus influenzae 3655]
 gi|148825754|ref|YP_001290507.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
 gi|229847324|ref|ZP_04467426.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
 gi|68058505|gb|AAX88758.1| predicted permease [Haemophilus influenzae 86-028NP]
 gi|144985515|gb|EDJ92331.1| predicted permease [Haemophilus influenzae 3655]
 gi|148715914|gb|ABQ98124.1| leucyl aminopeptidase [Haemophilus influenzae PittEE]
 gi|229809749|gb|EEP45473.1| leucyl aminopeptidase [Haemophilus influenzae 7P49H1]
          Length = 358

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 138/362 (38%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  + +  +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTIMKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|126661397|ref|ZP_01732459.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
 gi|126617328|gb|EAZ88135.1| hypothetical protein CY0110_10922 [Cyanothece sp. CCY0110]
          Length = 353

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/359 (11%), Positives = 123/359 (34%), Gaps = 33/359 (9%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           L  V    +  +    + V  S   L    +I    +P       P    + T      +
Sbjct: 1   LVSVLGVAIGYLSDLADKVVDSNLPLMQASEILLLKVPEFTAYALPISVMLSTLLTYGRL 60

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           + ++EL+   + G S   LI P + +++ ++   F+   ++ P        +  +     
Sbjct: 61  SNDSELIAFRSCGVSLYRLIIPAMVMSLAVTGVTFLMSELVVPAANYRATAILVEYLQED 120

Query: 141 TFSYLEENLFFRLDDDLY------------IKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
              +  +++F+   + +             +  ++      L+ + +++  + + ++I  
Sbjct: 121 HPYWQNKDIFYPDYEQVTLPNGDQEKRLKHLFFAEQFDGQHLKTLTVLEWLEERLNRIVV 180

Query: 189 AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS---------YTLQTESANSSTIV 239
           + S + +   +     +G +++ S  +       F+          +    +  +   + 
Sbjct: 181 SDSATWNGQEETWDFFNGTIYQLSSDASYKEAYPFEHRQLPLTKAAFEFALQGRDPYEMN 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +    Q +  L     +      + L  ++    ++L      V+F    +V +   A  
Sbjct: 241 IIQARQYMKILKMMGDD------KKLRMFQVRIQQKLAFPFICVVF---GVVGSALGATP 291

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           +Q  +     +S+ I F  +    ++I  +       P+L  +L      ++   ++ +
Sbjct: 292 QQMSRATGFGLSVVIIFSYYLLG-FLIGSLGLMGLISPVLAGWLPNLLGLAMGGWLLYR 349


>gi|240948567|ref|ZP_04752940.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
 gi|240297075|gb|EER47646.1| permease, inner membrane protein yjgQ [Actinobacillus minor NM305]
          Length = 360

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I  +  ++   +V +  +I+ ++    V   +    +    +   IP  
Sbjct: 6   MNVLERYIGKTILSAIFLTLFLLVGLGAIIKFVEEFKAVGKGSYDALLAAYYTFLTIPRD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L ++   +EL+++  +G SR  +   V+  A+ L +F  I    
Sbjct: 66  VETFFPIAALLGSLLGLGNLASRSELVVMQASGFSRFRIGLAVMKTAVPLILFTMIIGEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     + + +    +          F+  D + ++ I +      L  + I     
Sbjct: 126 GVPQTEQYARDMRS-VAQSGGSMLSTSGGFWARDGENFVYIRRIGSETQLNNLSIYHFDK 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A       D  + IL   E       S   S  K + +      +    + L
Sbjct: 185 KELKSITQAAEAKYTND--SWILKKVEKSTIEGNSIKQSKEKDQPWQTSITPSKLGIVSL 242

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    +++ L +          +  + +   F +++ Q +   +  L++I        +R
Sbjct: 243 KPESLSITGLAD-YVGFLKETGQDPKRFEITFWRKVYQPISMAVMMLLAISFIFGP--LR 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY---IPILYLFLFCISSIFLLMIKKK 357
                  I I +   F  +       +      +    I  L   L C+S ++ L+ KK+
Sbjct: 300 SSTMGAKIVIGIVAGFMFYVANIVFGNMSLIATWLPVSIGALIPSLICLSIVWWLLTKKR 359


>gi|157960740|ref|YP_001500774.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
 gi|157845740|gb|ABV86239.1| permease YjgP/YjgQ family protein [Shewanella pealeana ATCC 700345]
          Length = 352

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 130/349 (37%), Gaps = 15/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +LYI R +  +  ++ L +  ++ +I+ + ++ +V   + ++        +LIP  
Sbjct: 1   MKILDLYIARILISTSSLALLVLTGLSGIIKWVDQLRVVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IELFFPMAVLLGALIGMGMLASNSELVVMQSSGLSRLQITMSAMKTAIPLMILVMMLTEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ +    L++ I     +N L+ I + +  D
Sbjct: 121 VAPVAELRAKEIKRTKVSGGSLIESNRGIWAKDGP-LFVSIGGVVDSNHLRDITLYEFSD 179

Query: 181 -TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            T      +A S       +   L D            +  ++   +         S + 
Sbjct: 180 TTDLTSTVHADSAEYR--DKYWQLFDVRRTTLKDEQVVLVNLEQDKWISSLTPEKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  LL+   +      +  E Y     ++L Q +   +  L+++         
Sbjct: 238 VKPEALSIEGLLD-YLDYLESNNQASERYELALWRKLMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                +  + +   +  GV  GFS+ I      P  I  +Y     IS+
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYICSEIFGPLSI--VYGLPAFISA 335


>gi|226951740|ref|ZP_03822204.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|294648982|ref|ZP_06726430.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837530|gb|EEH69913.1| permease YjgP/YjgQ-like protein [Acinetobacter sp. ATCC 27244]
 gi|292825117|gb|EFF83872.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 356

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 131/359 (36%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + L + F+  +   L  +  +  +  +    L    +  P  L
Sbjct: 5   RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFL-YVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A+LL +  F     +
Sbjct: 64  YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFTLSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      + +  K Q ++      +  + R        I   N    L+ I  +D  + 
Sbjct: 124 IPYTNEKAQSI--KKQRSVAALGEVKGYWSREGQRFT-YIDYANSQGQLRNIQSIDFDEN 180

Query: 182 -QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A+ G+   D Q  +    ++      +   +    ++  L  +      + +
Sbjct: 181 YRLQSFVTAEQGNFVKDGQWTLEQSHQIDLLPQGNAIKTDHANQALALALQPKYVHMVTI 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + + L++       Y  ++ +TY   F +++      +   LI+         +R
Sbjct: 241 DPEDLSPTQLISFMRYMEEYS-QVPKTYELAFWQKVASPFALIALVLIACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L    G F+   ++ +       +P +  +L + L  +   +LL   +
Sbjct: 298 QQSMGFRLVIALFTGLGFFYLQDFMGYASLVYAPSPAWFVLLPVVLMFMIGSYLLYRAR 356


>gi|319776037|ref|YP_004138525.1| inner membrane protein [Haemophilus influenzae F3047]
 gi|329123195|ref|ZP_08251764.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
           11116]
 gi|317450628|emb|CBY86848.1| conserved inner membrane protein [Haemophilus influenzae F3047]
 gi|327471540|gb|EGF16984.1| YjgP/YjgQ family membrane protein [Haemophilus aegyptius ATCC
           11116]
          Length = 358

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 137/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGAIFSTLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFEQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|197105522|ref|YP_002130899.1| hypothetical protein PHZ_c2059 [Phenylobacterium zucineum HLK1]
 gi|196478942|gb|ACG78470.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 386

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 8/268 (2%)

Query: 15  SFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETT 74
             + +    +    + +IL+ ++L+S S+E    + +++  L+P  + +  P  F +   
Sbjct: 5   PMVGATAVTLVALLLERILRLLDLLSESSERFTFVAQLAVNLVPHYVGLTLPAAFFIALI 64

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
            V+  MN+ +E+  +   G S   L  P L LA +LS    I    ++P  R   + +  
Sbjct: 65  IVVNRMNQASEIDALLAAGVSLTRLAAPYLVLAGVLSFLTLIVFGALQPYSRYAYRAVLH 124

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDTQTHKIYYAQSGS 193
            AQ A     + E      +DDL +   + +     L  +FI         ++  A    
Sbjct: 125 AAQNAGWSGQVPEGTIIAPNDDLIMTTDQADAAGQRLTRVFIRRLTPEGREEVTTAGVAE 184

Query: 194 IDLDRQA----IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST--IVLKANDQNL 247
           +          ++L DG+  R +    +  ++ F+ +T+Q   +  +        +++ L
Sbjct: 185 LRRTADGKNVTLMLKDGQQLRFNRR-GEPELLSFEDFTMQLPLSGPARLLRARGGDEREL 243

Query: 248 SFLLNPNPNNPNYRPELLETYRSEFHKR 275
           +        N        ET  +E + R
Sbjct: 244 NLFELAKKANDPQSVIPRETLLAELYGR 271


>gi|119773934|ref|YP_926674.1| hypothetical protein Sama_0797 [Shewanella amazonensis SB2B]
 gi|119766434|gb|ABL99004.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 352

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 128/354 (36%), Gaps = 13/354 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  
Sbjct: 1   MSILDWYIARVLISTSSLCLLVLTGLSGIIKWVDQLRLVGRGSYTMMDAGVYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     L  M  N+EL+++  +G SR+ +    +  A+ L + +      
Sbjct: 61  IEMFFPMAVLLGALIGLGMMAANSELVVMQASGQSRLQITVSAMKTAVPLMLLVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P       +L A      +       ++ + D DL++ I + +  NTL  I + +  +
Sbjct: 121 VAPAAEQRANELKATMISGGSLIKSHRGIWAK-DGDLFVNIGEVSDINTLGNITLYEFDQ 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             + + +  A+  +   D +A  +        +  +     +  + +         S + 
Sbjct: 180 QERLNHVVNARRATF--DGKAWQMQGVSKTHITEEAIVREDIDSELWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L+    +      +    Y     ++L Q +   +  L+++         
Sbjct: 238 VKPESLSIQGLMG-YLDYLRINSQDPSRYELALWRKLMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                +  + +   +  GV  GFS+ I      P  +           +  LL 
Sbjct: 294 -----LRSVTMGARVLLGVVAGFSFYICNEIFGPMTMVYQLPAFIGAGAPALLF 342


>gi|260771006|ref|ZP_05879935.1| putative membrane protein [Vibrio furnissii CIP 102972]
 gi|260614243|gb|EEX39433.1| putative membrane protein [Vibrio furnissii CIP 102972]
 gi|315179054|gb|ADT85968.1| hypothetical permease, YjgP/YjgQ family [Vibrio furnissii NCTC
           11218]
          Length = 356

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 131/358 (36%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  + ++     V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDWYIGRTIIATTMLVLATFVGLSGIIKYVEQLRKVGDGTYDLMQALLFVVLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  A+ L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALAASSELVVMQAAGFSKLDIGLSVLKTAVPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L A A        +   ++ R  +D +I I K + N              
Sbjct: 123 APQAQKAARDLRAFATSGGKILSVRTGVWARDIND-FIFIGKIDDNRLYGMNMWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIVL 240
           Q   + +A+     L   + ++ D EV   +         +    +         + + +
Sbjct: 182 QLRHVIFAKQVDY-LGGNSWVMKDVEVTDMNDDVVITKQSLPEYRWETSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  +  LS L +   +      +    Y   F +++TQ     +  L++   +    R++
Sbjct: 241 KPEELALSGLYD-YVHYLKASEQDASRYELAFWRKITQPFSIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   +  +S   LL+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGIPPVFGAVAPSIVFLSIALLLLRRK 355


>gi|120436531|ref|YP_862217.1| permease [Gramella forsetii KT0803]
 gi|117578681|emb|CAL67150.1| permease [Gramella forsetii KT0803]
          Length = 459

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 95/272 (34%), Gaps = 25/272 (9%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  I   I  ++       ++LK   Y  P ++P+V P    + +     S   N
Sbjct: 1   MFIFVLQTIWLYIGELAGKDLDAEVILKFLLYFSPKLVPLVLPLTILLTSIMTFGSFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + ++G S    ++ +    + +S   F   N + P        L           
Sbjct: 61  YEFAAMKSSGISLGRAMRSLTVFIVFISFVAFFFANNVIPAAEFKSINLRKNIAQLKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT----LQGIFIVDSRDTQTHKIYY-AQSGSID--- 195
            + E +F  +       I   +        L  + I   + T  +     A+ G +    
Sbjct: 121 AISEGIFNDIG---TFNIKVEDKTGENDQYLTDVIIHQKKQTGGNTTVIKAKEGELVGST 177

Query: 196 -LDRQAIILNDGEVHRK-------SPISKDISIMKFKSYTLQTESANSSTIVLKANDQ-N 246
             D  ++IL +G  + +          +K  +   F  Y +  + ++ + + L+     +
Sbjct: 178 ESDVLSLILKEGNYYDEIKPSDYDKRKNKPFTKSYFDEYVINIDLSDFNNVNLEDESYSS 237

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
              +L  +  +     E ++++   ++ R+ +
Sbjct: 238 THGMLKISELD-----ESIDSFSVSYNNRMAE 264


>gi|262170558|ref|ZP_06038236.1| putative membrane protein [Vibrio mimicus MB-451]
 gi|261891634|gb|EEY37620.1| putative membrane protein [Vibrio mimicus MB-451]
          Length = 356

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 134/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I K +    +           
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + +A+      + +  ++ D ++ R  + I      +    +         + + +
Sbjct: 182 KLSTVIFAEQVDYVGNNE-WLMKDAQLTRMVNEIEISKETLPEYRWRTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +   +      +    Y   F +++TQ +   +  L++   +    R++
Sbjct: 241 KPEELSLSGLSD-YVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|71737643|ref|YP_273426.1| hypothetical protein PSPPH_1159 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558196|gb|AAZ37407.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320322887|gb|EFW78978.1| hypothetical protein PsgB076_20532 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329804|gb|EFW85792.1| hypothetical protein PsgRace4_11126 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 353

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 121/362 (33%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+ R  ++ +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEE-FIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+  +   D     L D      +    ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEANFKTD--YWELKDVSTTHFNDGRTEVINTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L N   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWN-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L      ++  + + 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLMPAAACALAGVYLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|32491207|ref|NP_871461.1| hypothetical protein WGLp458 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166414|dbj|BAC24604.1| yjgP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 357

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 133/361 (36%), Gaps = 30/361 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ I +S       +  I +  ++++ ++ +S       I+  +    IP ++ 
Sbjct: 2   IILKYLIKKILKSQFHILCILFLIFFCQKLVRILSSMSEELIPKKIIFFLLILYIPEIIK 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +    V+  ++ + E++ I   G      IK +LFL +L+  F F++   I 
Sbjct: 62  LILPLSLFISIALVMQKLHNSNEIISIKTCGIGNECFIKVILFLNLLVMSFSFVNVMWIS 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD---SR 179
           P   +   ++ +     +    L E  F  + D   I       +  L+ IFIV      
Sbjct: 122 PLALNYKHKIISYNLSNIDKLKLNEKQFKFIKDKNIILFVDNIKDKNLKNIFIVKFILKN 181

Query: 180 DTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 ++ ++ GS+  D    +  I LN GE +     S    I  F+ Y ++  +   
Sbjct: 182 KEYIPVVFVSKHGSLYKDLLKNKNVINLNYGEYYEIDFKSNYFFIASFERYQIELFN--- 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVA 292
                       S L  P+     ++      +E Y+ E++ R+T     +I  +IS   
Sbjct: 239 ----------TFSRLKEPSSEYVYFKNLFNSCIEEYKLEYNWRITIVFSVLIMSIISFAL 288

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             K+    Q       F +L +    +  F      I  N     +  +F   I +   +
Sbjct: 289 NIKKLGSGQ-------FFNLFLGIFFYLIFFISQTFIYSNHSLFKLHSIFFMWIINFIYI 341

Query: 353 M 353
            
Sbjct: 342 F 342


>gi|258622809|ref|ZP_05717827.1| Predicted permease [Vibrio mimicus VM573]
 gi|258584997|gb|EEW09728.1| Predicted permease [Vibrio mimicus VM573]
          Length = 356

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 134/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I K +    +           
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + +A+      + +  ++ D ++ R  + I      +    +         + + +
Sbjct: 182 KLSTVIFAEQVDYVGNNE-WLMKDAQLTRMVNEIEISKDTLPEYRWRTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +   +      +    Y   F +++TQ +   +  L++   +    R++
Sbjct: 241 KPEELSLSGLSD-YVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAVAPSLVFLAIALGLLGRK 355


>gi|145629200|ref|ZP_01784999.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
           22.1-21]
 gi|145639140|ref|ZP_01794747.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
 gi|144978703|gb|EDJ88426.1| hypothetical protein CGSHi22121_10370 [Haemophilus influenzae
           22.1-21]
 gi|145271702|gb|EDK11612.1| hypothetical protein CGSHiII_03859 [Haemophilus influenzae PittII]
 gi|309750721|gb|ADO80705.1| Lipopolysaccharide export permease, LptG [Haemophilus influenzae
           R2866]
          Length = 358

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 136/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     +   AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDTRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  +    +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTITKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|327398670|ref|YP_004339539.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
 gi|327181299|gb|AEA33480.1| permease YjgP/YjgQ family protein [Hippea maritima DSM 10411]
          Length = 348

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 149/365 (40%), Gaps = 33/365 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI     ++F +S  F V +  +      ++ +  +  S+  ++    Y  P +
Sbjct: 1   MKKIHKYITIFFLKTFFISLAFFVLLFVLSDFFSNLSDIVGNGVSIKYIISYYVYYTPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF FA+ +   L  ++   E++++ ++G S   + KPVLF +I++++ +F S+ +
Sbjct: 61  IYFSLPFIFALSSLVSLGYLSSKNEIIVMRSSGLSIFKIAKPVLFFSIIVAVLMFASKEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIV--D 177
           I            A       F   +  L +    +++IK++  N  N +   +     D
Sbjct: 121 IVNYGLEK-----ASFVKHYYFKNKQFKLGWTKVGNMFIKVNGLNVTNNMAYNVTAYRVD 175

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-FKSYTLQT----ES 232
               +   I  A+   +    + II  DG     S    + S  + FK + ++T     S
Sbjct: 176 KDFNRVEAIITAKR--VKFKPKEIIFIDG----CSFNMPNFSQGRCFKDFKIKTNKSFYS 229

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             SS+   + + ++L F    + +   Y   ++         R       +I  LIS V 
Sbjct: 230 LFSSSKFKEPSIKSLVFSYKHSLDKDYYLSLIIH--------RFVYPFSCIILTLISFVF 281

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ----NPYYIPILYLFLFCISS 348
             K    R+   +  +F S S+ F V+ G   +I  + +    +P    ++++  +   S
Sbjct: 282 VLKT-NPRRGGFVKNVFSS-SLVFLVYIGSLELISSMGRYSMVDPNISIVIFILFWLSVS 339

Query: 349 IFLLM 353
           ++ L+
Sbjct: 340 VYNLL 344


>gi|289678193|ref|ZP_06499083.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 321

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 110/324 (33%), Gaps = 16/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D      +  S ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAA 293
           ST+++     ++S L +   +    +      Y   F  ++ Q      ++   IS +  
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFG 317
             R++   ++    + +  +    
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRII 315


>gi|325295269|ref|YP_004281783.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065717|gb|ADY73724.1| permease YjgP/YjgQ family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 354

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 123/353 (34%), Gaps = 8/353 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + Y+     R F+++ L  + +  VI  + +++    S   +        Y +P   
Sbjct: 3   KRLDRYVFIETLRYFVLTLLTFMVLFIVIDFVSKMDTFLKSG--IADGFLYVIYRLPLYT 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T   L++ + + EL ++   G S      P++FLA L SI  F+   ++
Sbjct: 61  VRVIPIATLIATMVTLSNFSFSNELTVVKALGISVYRFSFPIIFLAFLASILSFLIGELV 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRD 180
            PK  S  K +  K +    F    ++++F+ D+  ++ +   NP  +  + I I     
Sbjct: 121 VPKSISLSKSIYYKVKENKNFHVSGKSIWFKKDEKTFVFMEYVNPAKSEAKRISIFFLGK 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +          I++      L +          K++   K     +         I  
Sbjct: 181 EFSPTKRIDALYGINIKDDIWKLKN----CFERKLKELKTTKISEKEINLGIGKKDLIFT 236

Query: 241 KANDQNL-SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +   + + SFLL                Y  + + +L   L P++  +I I         
Sbjct: 237 QIETETMSSFLLYKVIKQLKRAGYDTTGYLVDLYSKLAISLLPLVVAVIGIPLGVFNPRN 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           ++   +      +   +     FS +       P+Y       +F    + LL
Sbjct: 297 KKGYTLVIAAALIVFMWITISFFSSLGKSGVLPPFYSAFAPEVMFLSIGLLLL 349


>gi|330836570|ref|YP_004411211.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
 gi|329748473|gb|AEC01829.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
          Length = 427

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 144/423 (34%), Gaps = 73/423 (17%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI++    SF ++  F  FI +V QIL  I  V     S+  +L +    IP  L
Sbjct: 8   TLLRKYIVKEFLASFAVAFTFFFFIFFVNQILLLIQRVMVKNVSVADMLTLVVLSIPQFL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF      + V+   + + E++ + ++G     +  PVL + I+LS+  FI  +++
Sbjct: 68  IYTFPFSSLSAASMVIGEFSAHNEIIAMRSSGIPYRRIFSPVLVIGIVLSLLTFIVADML 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      ++   +    +    +    +  +     I  +    +N +  I + D+++T
Sbjct: 128 LPFSSVRYQKEYREIMQKIPTLDVA--SYSSVTVGDKIITAGRVEDNIIHDIILFDAKET 185

Query: 182 QTHKIYYAQSGSIDLDRQA-----IILND---GEVHRKSPISKDISIMKFKSYTLQTESA 233
              +   A+ G+I           + L +    EV    P S  +S  +    ++     
Sbjct: 186 AEPRTISARQGTIFPGISQNLTYRLELENPVVLEVSSTDPSSWSLSSARTARLSVDFIDQ 245

Query: 234 NSSTIVLKANDQNLSFLLNP----------------------------------NPNNPN 259
           + +   L     +   L++                                   + +N  
Sbjct: 246 SGALATLTPAQMSSRDLISAIEVRKQKINEQKQENLRLQNSLADELASVKAKAEDTDNGT 305

Query: 260 YRPELLETYR-----------------------SEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  L    R                       +E HK+L        F LI + A    
Sbjct: 306 EKERLKTNARQLEQKITSLKNYKIEDFYYTYYRAELHKKLALSAAC--FCLI-LTALPIS 362

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP--ILYLFLFCISSIFLLMI 354
            +  +  ++    +SL I+  V+W   + +     +  + P  +++     + +I L  +
Sbjct: 363 FIKVRHGRLIGFGLSLLIA-CVYWFILFFMQLKIFDVSFSPGWLMWFPDVLVLAIGLAFL 421

Query: 355 KKK 357
            ++
Sbjct: 422 SRQ 424


>gi|262373935|ref|ZP_06067212.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
 gi|262310946|gb|EEY92033.1| permease YjgP/YjgQ family protein [Acinetobacter junii SH205]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 133/359 (37%), Gaps = 11/359 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    ++ +    + L + L + F+  +   L  +  +  +  +    L    +  P  L
Sbjct: 5   RIVAKHVTKTTVLAMLGTTLVLSFLQVLFTYLGELGSLKPNYNAWQAFL-YVMWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L ++  N+EL+++ + G S   ++  V+  A+LL +  F+    +
Sbjct: 64  YEILPVAALIGSVLGLGALASNSELIVMRSVGISLWRIVGWVMRSALLLIVLSFVLSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSRD 180
            P      + +  K Q ++      +  + R        I   N    L+ I  I   ++
Sbjct: 124 IPYTNEKAQSI--KKQRSVATLGEVKGYWSREGQRFT-YIDYANSQGQLRNIQSIDFDQN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A+ G    D Q  + +  +V   +  +   +    ++  L  +      + L
Sbjct: 181 YRLQSFITAEKGQFVKDGQWTLQDSHQVDLLAQGNAIKTDHAQQALGLALQPKYVHMVTL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D + S L++       Y  ++ ++Y   F ++++     +   LI+         +R
Sbjct: 241 DPEDLSPSQLVSFMRYLEEYS-QVPKSYELAFWQKVSSPFALIALVLIACSFIFGP--LR 297

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           Q+     + I+L    G F+   ++ +       +P +  +L + L      +LL   +
Sbjct: 298 QQSMGFRLVIALFTGLGFFYLQDFLGYASLVYAPSPAWFVLLPIMLMFGIGSYLLYRAR 356


>gi|329962824|ref|ZP_08300709.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
 gi|328529381|gb|EGF56294.1| permease, YjgP/YjgQ family [Bacteroides fluxus YIT 12057]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 139/369 (37%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAIVTFSLGS 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P+    R   +    K + A T   ++      +D ++   I ++   +     F +
Sbjct: 140 YVIPRGSVTRINFEDKYYKPRKANTARNIQ----LEVDSNVIAYIERFEDYSKTGYRFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  RD Q      A+S + D        + D  +     + +  SI K            
Sbjct: 196 DKFRDKQLVSHLTARSITYDTASIHKWTIKDYMIREMDGMKE--SITKGDRIDTTLFMEP 253

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 254 ADFLIMKNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
           + K+    +      + I L++SF  +  F  I      N    P++ ++    + +   
Sbjct: 314 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVIAVWIPNVLYTFIA 369

Query: 352 LMIKKKYTK 360
             + KK  K
Sbjct: 370 FYLYKKAPK 378


>gi|262166530|ref|ZP_06034267.1| putative membrane protein [Vibrio mimicus VM223]
 gi|262026246|gb|EEY44914.1| putative membrane protein [Vibrio mimicus VM223]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 134/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMVVVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I K +    +           
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIGKVDNEQLIGMNLWRFDEHK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + +A+      + +  ++ D ++ R  + I      +    +         + + +
Sbjct: 182 KLSTVIFAEQVDYVGNNE-WLMKDAQLTRMVNEIEISKDTLPEYRWRTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +   +      +    Y   F +++TQ +   +  L++   +    R++
Sbjct: 241 KPEELSLSGLSD-YVHYLKASEQDSSRYELAFWRKMTQPISIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|94495767|ref|ZP_01302347.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
 gi|94425155|gb|EAT10176.1| permease YjgP/YjgQ [Sphingomonas sp. SKA58]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 124/358 (34%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +   LY+ R            +V +   + +L    ++++    S   L    G   P +
Sbjct: 9   RQISLYMARLFLTRTFAVLAMLVVVLQTLDLLGNSGDILAYPGNSDAQLWHYVGLRAPQI 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L ++N+N+E++ +   G S   ++ P++  A+ +SI  F+    
Sbjct: 69  IATFLPFSVLLGTLVMLATLNQNSEIISMKAAGLSAHQILAPLVLAALGVSIISFVFNER 128

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLY--IKISKYNPNNTLQGIFIVD 177
           I  +  + +    A         S ++ N + R  ++L     ++       L+ + I +
Sbjct: 129 IVVRSTAALSAWEAVDYGPVPPDSGVKSNPWVRDGNNLVNAAIVAGRGTAVQLRQVEIYN 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             + +   I  A  G  D+  ++ +L  G           +S +    +         + 
Sbjct: 189 RINNRLTTIVQAPKGHYDVASKSWVLE-GARQ-FDVARGTVSNIGTVRFGRDIRPDQFTL 246

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +      L      +        +        +L+  L  ++  ++  VAA   A
Sbjct: 247 ARVDPDALTFHEL-EAAIGDLRDAGRPTKELEGSLWHKLSGPLSALLMPILGSVAAFGLA 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              Q      + ++L  ++ V   FS    +     P        FLF +    +L  
Sbjct: 306 RSGQLFMRAVLGMALGFAYFVADNFSLAMGNLGAYPPVLAAWAPFFLFLLVGETVLFR 363


>gi|332296606|ref|YP_004438529.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
           14796]
 gi|332179709|gb|AEE15398.1| permease YjgP/YjgQ family protein [Thermodesulfobium narugense DSM
           14796]
          Length = 365

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 114/354 (32%), Gaps = 23/354 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K F  YIL+     F    L    +    + ++ I LV+ +  S     K++   +P  +
Sbjct: 7   KLFWSYILKDFLPFFFFGLLAFSGLMLAGESMRTIKLVADNQGSFLTGAKLAACGLPYSI 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     ++ ++ N EL+ + + G S      P + + I+ S   F +   +
Sbjct: 67  AFAFPMATLLGVLMAVSRISSNWELVALRSAGLSIFKFSLPFIIIGIIFSTVSFFTFEKL 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFF----RLDDDLYIKISKYNPNN-TLQGIFIV 176
                   + + AK       +  +  LF            I    Y P   +LQ ++I 
Sbjct: 127 AYPLLDKSRYIIAKDLKKELNTERQNVLFKLPPDSPQPKFIIFAKDYKPATMSLQDVYIQ 186

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +  +    +  Y+    +       + + G  +  S     +  + F+   +       +
Sbjct: 187 EFDNEFLKRTIYSSE--LSFTGNRWVASKGLSYEFSKDGIIVGRLDFEKLIVPLGVLPQT 244

Query: 237 T---IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                  K  D +   LL+   N+ +   +   +   + + +L+       F  I +   
Sbjct: 245 VKALPTKKPRDMSFFELLSYLSNSKDIVDK---SLYVDLYNKLSLPFACFAFACIGVAFG 301

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
                  ++       I+++     +  FS              + YL  F  S
Sbjct: 302 IA---SERKSSAIGFGIAITTVLFYYLIFSLF-------TTLGYMSYLPPFIAS 345


>gi|293610040|ref|ZP_06692341.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827272|gb|EFF85636.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124205|gb|ADY83728.1| hypothetical protein BDGL_003142 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 131/360 (36%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    +   + + +  +  +   L  +  +     +    L    +  P  L
Sbjct: 5   RIVAKYVTKTTALAMFGTTVVLSILQVLFTYLGELGELKPD-YNAWQALVYVLWGAPRYL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L S+  ++EL+++ + G S   ++  V+  A+LL I  F     +
Sbjct: 64  YEILPISALIGAVIGLGSLATSSELIVMRSVGVSLWRIVGWVMRSALLLIILSFALSEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P      + +  K+  ++      +  + R +   +I I   N    L+ I +VD  ++
Sbjct: 124 IPYTNEKAQSV--KSHRSVAALGEVKGYWSR-EGQRFIYIDYANSQGNLRDIQVVDFDQN 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISI-MKFKSYTLQTESANSSTIV 239
                +  AQ G    + Q   L   E          I    + +S  L  +      + 
Sbjct: 181 YYLQSLINAQQGQFIKNGQ-WALKKAEQMDILAAGNAIKTDHEEQSLALALQPKYVHMVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L   D + S L++       Y  ++ +TY+  F +++      +   L++         +
Sbjct: 240 LDPEDLSPSQLISFMRYMDEYS-QVPKTYQLAFWQKVASPFSLIALVLVACSFIFGP--L 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
           RQ+     + I+L I    ++   ++ +       +P +  ++ + L   +  +LL   +
Sbjct: 297 RQQSMGFRLVIALFIGLSFYYLQDFLGYASLVYSPSPAWFVLVPILLMFGAGSYLLYRAR 356


>gi|16273590|ref|NP_439845.1| hypothetical protein HI1703 [Haemophilus influenzae Rd KW20]
 gi|260581044|ref|ZP_05848866.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1176473|sp|P45332|LPTG_HAEIN RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|1574557|gb|AAC23349.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092284|gb|EEW76225.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 358

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 137/362 (37%), Gaps = 11/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGAIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTMIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     +   AKA    +   ++  ++ + D   ++ + +   +  L  I+I    +
Sbjct: 122 GIPQTEQFARDTRAKALSGGSILSIKNGVWAK-DGHHFVFVRRVTDDTKLDDIYIYTFDQ 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
                K+ +A   S   D     L   +V+  + +  +I      S T +T         
Sbjct: 181 QHNLIKLKHANQASYSEDEAKWTLR--QVNHSTIMKDEIITTNHLSETWETSLTPDKLGA 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           + L+    ++S L +   +      + +  +   F +++ Q +   +  L+++       
Sbjct: 239 VSLRPTSLSISGLYH-YISFLRETGQDVSRFELTFWRKIFQPVSVGVMMLLALSFIFG-- 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK--IEQNPYYIPILYLFLFCISSIFLLMIK 355
            +R       I   + + F  +     +     +   P     L   L  I  I+ L+ +
Sbjct: 296 SLRSVTAGARIVTGICVGFLFYVVNEILGQTSVVYGIPAIFGALIPSLLFIVMIWWLLSR 355

Query: 356 KK 357
           K+
Sbjct: 356 KR 357


>gi|332969353|gb|EGK08378.1| YjgP/YjgQ family permease [Kingella kingae ATCC 23330]
          Length = 354

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 121/370 (32%), Gaps = 26/370 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI+  +      +   I+ +   I +L  I  +     ++ + L+     +P  
Sbjct: 1   MKLLSRYIITRLSLMSAYALFAILSLYSFIDLLSEIG-IVGQNYTMAVALQYIALQMPAR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L  +  ++E  +I  +G S   LI  +L    + ++F  +    
Sbjct: 60  AYQLMPLATLIGGLIALNQLVSSSEWAVIKTSGWSSKRLIGTILQFGAIFAVFTILLGEW 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P+       +   A+   T + +   ++ +   +  I I    P+ TL  + I    D
Sbjct: 120 IAPELSRRGDAIKTLARSQQT-TLVHNGVWIK-QPNSMINIGAMLPDKTLLDVKIWQFND 177

Query: 181 T-QTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             Q  +  YA+       +  +       L D ++ R S   +       +S  L     
Sbjct: 178 QYQLTESVYAKQARFANGQWQLNQVQSSELADKQI-RTSQQGQRTWQFNIQSNMLDVLMV 236

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               +      Q + +L +       Y                   ++P+   ++++VA 
Sbjct: 237 KPEQMSFINLTQYIGYLKDNKQQTEAYDVAWWNKL-----------VYPIATMVMALVAL 285

Query: 294 DKRALVRQRKKIHPIFIS---LSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
              +   +   +         L + F           ++ + P ++  + L     +   
Sbjct: 286 AFTSNSGRHGNLGLKLFGGICLGLLFFFTGRLFGFTTQLYRVPAFVSAV-LPTLGFALWA 344

Query: 351 LLMIKKKYTK 360
           + +I K+  +
Sbjct: 345 MWLIVKQERR 354


>gi|146297810|ref|YP_001192401.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
 gi|146152228|gb|ABQ03082.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
          Length = 362

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 136/365 (37%), Gaps = 12/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +F +  L  + I  VI + +++N +  +      +           
Sbjct: 2   LTIIDKYILKRYLATFSVMILLFIPIGIVIDVSEKVNKMLENKIPFTQIAIYYYNFTVYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +      + +  NTE++ I ++G S    ++P +  A ++S+F+ +    
Sbjct: 62  ANSLFPIFLFLSVIWFTSKLANNTEIIAILSSGISFTRFLRPYIIGASIVSVFVLLMGFF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIKISKYNPNN-TLQGIFIV 176
           I P                     +     N+F +++D  +I ++ +N  + T     + 
Sbjct: 122 IVPAASEGFNNFRYTYLKGNGKQLMRGENTNVFRQINDHDFIFVNSFNEESKTAFNFTLE 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                +      A     D  ++   L D        ++  I     K+   + E A+ +
Sbjct: 182 HFEKEKLTYKITASRIKWDPKKKIYTLYDYTKRTVGDLNDVIEKAPEKNVGFKFELADLT 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V  A    L  L++            + TY    +K+ +  +   I  +I++      
Sbjct: 242 PVVYIAETLTLGKLIDFIEKERKRGSGNINTYLVVLYKKYSVPVSAFILTIIAVAV---S 298

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLL 352
           ++ R+      + I ++I+F  F  F  I   + +   + P+L ++     F I +++LL
Sbjct: 299 SMKRRGGMGMNLAIGIAIAFS-FVFFDKIFGTLAEKSTFSPLLAVWFPNIVFGILAVYLL 357

Query: 353 MIKKK 357
              K+
Sbjct: 358 RNAKR 362


>gi|114562104|ref|YP_749617.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333397|gb|ABI70779.1| permease YjgP/YjgQ family protein [Shewanella frigidimarina NCIMB
           400]
          Length = 352

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 134/355 (37%), Gaps = 15/355 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI R I  +  +  L +  ++ +I+ + ++ LV     ++        +L+P  
Sbjct: 1   MRILDLYIARMIVSTSSLCLLILTGLSGIIKWVDQLRLVGRGAYTMLDAGIYVLFLVPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++  +G SR+ + +  +  AI L I +      
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQVSGMSRLQITQSAMKTAIPLMIMVMALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    + K+L A      +       ++ + D DL++ I +    NTL  I + +  D
Sbjct: 121 GAPIAEKSAKELQATKISGGSLIKSHRGIWAK-DGDLFVNIGEVQDVNTLSNISLYEFND 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            Q       A +     D   + + +    +   + +D   +    +         S + 
Sbjct: 180 QQELTRVTHANTAVFVDDVWQLSVVENTTVKDDRVIRD--HLDTDVWQSSLTPDKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++S L++   +      +    Y     +++ Q +   +  L+++         
Sbjct: 238 VKPEALSISGLID-YLDYLKVNQQDPSRYELALWRKVMQPVTVAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                +  + +   +  GV  GFS+ I      P  I  +Y     + +I   M+
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYISNEIFGPMSI--VYELPAVVGAIAPSML 341


>gi|33151746|ref|NP_873099.1| hypothetical protein HD0552 [Haemophilus ducreyi 35000HP]
 gi|33147967|gb|AAP95488.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 360

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 127/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E YI + I        L    + ++I++++    V             +  ++P+ 
Sbjct: 6   MNILERYIGKTIIMMMFAVLLMSSGLVFIIKLVEEFKNVGEGNYDALTATYYALLMLPSD 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L+++  ++EL+++ +TG SR  +   V+  AI + I    +   
Sbjct: 66  IKEFVPVVLLIGGLLGLSNLASHSELVVMQSTGFSRFRIGLAVMKTAIPIIILTMSASEW 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK     + + +    +          F+  D + ++ I      + L  I I    +
Sbjct: 126 IIPKVEQFARNMRS-VAQSGGSMLSTNGGFWAKDGNNFLYIRHIENEHQLNNISIYHFEN 184

Query: 181 TQTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                +  A S   +     +       + D  +      +++               + 
Sbjct: 185 KVLTSVSQADSALFNGKDWTLQNLQTATITDHGIQTTHQANQNWQTT--------ITPSK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + LK    +++ L +   +      +  + ++  F +++ Q +   +  L++I    
Sbjct: 237 LGIVSLKPESLSIAGLAD-YVSFLTETGQDSKRFQIAFWRKVYQPISMAVMMLLAISFIF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       +FI +   F  +     F  +       P  I  L   L C++ ++ 
Sbjct: 296 GP--LRSSAMGTKLFIGIIAGFIFYVSNIVFGNMTLVFSWLPIAIGALIPSLICLAIVWW 353

Query: 352 LMIKKK 357
           L+ KK+
Sbjct: 354 LLTKKR 359


>gi|121605071|ref|YP_982400.1| permease [Polaromonas naphthalenivorans CJ2]
 gi|120594040|gb|ABM37479.1| permease YjgP/YjgQ family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 379

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 135/385 (35%), Gaps = 34/385 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS---SSTESLNIL---LKISG 54
           MK+    I   +  S  +  +  + + +   ++  +  +     + +S+  +   L    
Sbjct: 1   MKTIRRLIYGEVLGSIALVAMGFLALFFFFDLVDELQYLGKNNGAGDSIYQIRHALLYVA 60

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
            LIP  L  + P    + +  V++ + +++E  I+  +G      +K +L+L        
Sbjct: 61  LLIPNHLYELLPISVLIGSIFVMSRLAQSSEYTILRTSGLGPWRALKLLLWLGAFFVALS 120

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTF----SYLEENLFFRLDDDLYIKISKYNPNNTL 170
           F+  + I P      + + A+ Q  +T     ++L+E    ++  +  + +S+ +PNN +
Sbjct: 121 FLVGDYIAPASERAAQLMKARYQNKITVGQTGAWLKEK---QVSSNFIVNVSELSPNNEM 177

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-----------KDIS 219
            G+ I +               +      A  L +         +             + 
Sbjct: 178 HGVRIYEFNHQGLIVSTTEAPVAAFSLNTAWQLRNATRTEFDVTTSAGGVNAPAQQAKVK 237

Query: 220 IMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
                SY    +  +   S  +L+ +      L N    +     +  + Y  EF K++ 
Sbjct: 238 RTDVASYRWPTEISTEMVSVALLRPDRMATLDLFN-YIRHLEANGQTSQRYEIEFWKKVF 296

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPY 334
             L  ++  ++++  A      R       +F  + I    F     F YI +     P+
Sbjct: 297 YPLSCLVMVMLALPFA--YLHFRSGSITSYVFAGVMIGISFFLLNNVFGYIGNLRNWQPW 354

Query: 335 YIPILYLFLFCISSI--FLLMIKKK 357
                   L+   S+  F  ++ ++
Sbjct: 355 LAAATPGLLYMAISMAAFGWLVLRR 379


>gi|328949933|ref|YP_004367268.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450257|gb|AEB11158.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 346

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 132/364 (36%), Gaps = 25/364 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + E Y+LR +G   L     +V +     + +    + +       + +   + +P  
Sbjct: 1   MTTLERYLLREVGAYLLGGLTVVVLLLLGGVLFEVFAPLLARGADPLAVGQYLAHRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +       L+ M  ++EL ++  +G SR  ++  +++ A LL++  F++   
Sbjct: 61  LVRGLPIAYLFALLLALSRMAEDSELKVLLASGISRERVLLALVWFAALLALMGFVAGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+     +Q+  +A LA   + L+   FF       + + +   +       I + R 
Sbjct: 121 WVPQQLQKARQVLRQAILAKPRALLQPGTFFTDAYGRLVYVGRVKDDG------IAEIRV 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A SG+    R  + L DG            +I +F        +   + +  
Sbjct: 175 LAPGEVLTAASGAFVEGR--LFLEDGMRVTFEGARPR-TIARFAR-----GTMPLNELAF 226

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSE---FHKRLTQWLFPVIFGLISIVAADKRA 297
           +      +  L                Y +E   + ++  +    + F L ++       
Sbjct: 227 EPPASVANLTLAELRARIQEFKRSGLPYHAEATAYWRKWAEPAATISFALFAV---GLAF 283

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
            +    +   +   ++++F  +  +S     + +     P++  +    L+ +++  LL 
Sbjct: 284 WMLGGSRSLGMVGVVTLTFAYYATWSVF-RIMGEQGALPPVIAAWGPNLLYALAAGVLLG 342

Query: 354 IKKK 357
           + ++
Sbjct: 343 VGRR 346


>gi|77457218|ref|YP_346723.1| permease YjgP/YjgQ [Pseudomonas fluorescens Pf0-1]
 gi|77381221|gb|ABA72734.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 353

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/359 (14%), Positives = 125/359 (34%), Gaps = 13/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI   +   F+     +  I  +  +   I+ +   S T +L  +L       P
Sbjct: 1   MVKLDRYIGSSV---FIAIIAVLAIILGLATLFAFIDEMGDVSDTYTLVDVLSFVLLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +     L S+  ++EL ++   G S   ++  V+   ++L +   +  
Sbjct: 58  RRLYDMLPMAALIGCLIGLGSLASSSELTVMRAAGVSIGRIVWAVMKPMLVLMLAGVLIG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVD 177
             + P   S  +   + AQ +      +  ++     D +I I+   PN  L G+     
Sbjct: 118 EYVAPATESMAQANRSLAQGSGDAQSAKHGMW-HRQGDEFIHINSVQPNGRLYGVTRYHF 176

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            ++       +A+    D D     L D    +    S ++     + + +       ST
Sbjct: 177 DKERHLLSSSFAKRAEFDTDH--WQLTDVTTTKFHERSTEVVNTPVERWDVSLSPQLLST 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V+     +++ L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 235 VVMAPESLSITGL-WGYIHYLADQGLSNGRYWLAFWVKVLQPLVTAALVLMAISFIFGPL 293

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           R++   ++    + +  +            +     +P +  ++   +  ++ ++LL  
Sbjct: 294 RSVTLGQRVFTGVLVGFTFRIVQDLLGPSSL-VFGFSPLFAVLVPAGVCALAGVWLLRR 351


>gi|297565137|ref|YP_003684109.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296849586|gb|ADH62601.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 337

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 115/353 (32%), Gaps = 28/353 (7%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR     + +  L  V +     +     ++      L+ +L++  Y +P  L +
Sbjct: 2   LQRYLLRETLGLYTVGILIFVGLLTTDLLSSLSGVLLRQNTPLSDVLQLVVYRLPYTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L+   R +EL      G    +L+ P L L +++S     +E  ++P
Sbjct: 62  ALPLGLVFSLLVTLSRWIRQSELKAAYAGGIPPRSLLWPALLLGVVVSGVALWNEGWVKP 121

Query: 124 KCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYIKISKYNPNNT---LQGIFIVDSR 179
           + ++    +  +    +     L + ++      +Y    +  P+     L+G+ +++  
Sbjct: 122 EAQARFDAVQYRIYYGSQLSGVLSDKVYAPEGLGVY-YAQRIYPDREGARLEGVRVIEP- 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                 I+ A  G        +       +R  P    ++ +  +           S+  
Sbjct: 180 ---GGAIWSADRGRWLEKSWQLQ----NAYRVDPD-GKVTQVSLQPLPFPARFVPQSSSS 231

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A    L  L      +P+ R  L  TY           L  ++   ++IV        
Sbjct: 232 -GALTLRLPDLHAAARVDPSVRFTLARTY--------ANALGALVLAWLAIVVGLS---- 278

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             R+        + + FG +  ++      + N +     +L       +   
Sbjct: 279 -LRESAWAFISIVGLIFGYYVLWTASAQFAKFNVWGAYGAWLPNLVYGLLAAW 330


>gi|52425603|ref|YP_088740.1| hypothetical protein MS1548 [Mannheimia succiniciproducens MBEL55E]
 gi|52307655|gb|AAU38155.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 356

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 135/364 (37%), Gaps = 18/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI + I  +   + L +V ++ +I+ +++   V   +         +   +P  
Sbjct: 2   MNTLDRYIGKSILGAIFATLLTLVGLSGIIKFVEQFRSVGKGSYDSMQAFLYTVLTMPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++ + G SR+ +   V+  A+ L +   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQSAGFSRMKIGFAVMKTALPLVLLTMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
             P+     + + +KA    +   ++  ++ +  +D +I I +   +  L  I+I   + 
Sbjct: 122 GIPQTEQFARDMRSKAISGGSMLSVKNGIWAKDGND-FIYIKRATEDANLNNIYIYSFND 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY-----TLQTESAN 234
           + Q  ++ +A   S +     +        + +        +K K+Y             
Sbjct: 181 NRQLQRVSHANKASYENGSWVL-------KQVNESQISADEIKTKNYLNRPWKTSLTPDK 233

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVA 292
                +K    ++S L +   +      +  + +   + ++L Q +   +  +++   + 
Sbjct: 234 LGIFTVKPTSLSISGLSS-YISFLKETGQDSKKFELTYWRKLFQPISVGVMMMLALSFIF 292

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              R++    + +  I       + +   F  +       P    ++   LF + + +LL
Sbjct: 293 GPLRSVTAGARIVTGICFGFVF-YVINEIFGPLSLVYNVAPIIGALMPSLLFLVITWWLL 351

Query: 353 MIKK 356
             K+
Sbjct: 352 SRKR 355


>gi|328954009|ref|YP_004371343.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328454333|gb|AEB10162.1| permease YjgP/YjgQ family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 372

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 118/344 (34%), Gaps = 7/344 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +   LY+ R   R+F ++    V I  +I   ++I+ +  +      +L+  G  +P   
Sbjct: 16  RLLMLYVAREFCRNFFLTLAAFVGIYLIIDFFEKIDRLHRAQLGFVGILEYFGAKLPLAT 75

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    +        + R+ E   I   G +   L++P+L LA +L +FL      +
Sbjct: 76  GQVLPASVLLAVIITFGILARHNETTAIKCAGLNITILLRPILLLASVLVLFLLSLNLFL 135

Query: 122 EPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
            P     +      K         ++    +   D     IS++  +  +++ + I    
Sbjct: 136 TPWLTQRVNIIWETKVDKKPARELIDLKWLWYKGDRAIFHISEFRKDTKSMENVKIYVF- 194

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D Q H   +  +       Q    +DG +    P  + +S    +   + TE       +
Sbjct: 195 DQQFHLTQFIAAQRAQWTGQNWRFSDGMIQTFLPQGEIVSEAFVERTMILTERPEDFVNL 254

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +   +   + L                Y  E H R+   L P+I  LI           
Sbjct: 255 ERRVTELNGYDLYRYIRRLERDGYDSRPYWVELHSRIAFALTPIIVTLIG----GGLIFW 310

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           R++  I    +S      ++W  S     + Q  +   +L  +L
Sbjct: 311 REKGNISLGIVSGIALVFIYWLLSTFFLSLGQVRFMPVLLAAWL 354


>gi|330873093|gb|EGH07242.1| hypothetical protein PSYMP_02386 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963183|gb|EGH63443.1| hypothetical protein PSYAC_00745 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 353

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 117/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +   FL     +  I  ++ +   I+ +   + T +L   L       P
Sbjct: 1   MVKLDRYIGKSV---FLAILAVLGIILGLVSLFAFIDEMGDINDTYTLLDALSYVMMTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D           ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L +   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L      +   L + 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|332708722|ref|ZP_08428694.1| putative permease [Lyngbya majuscula 3L]
 gi|332352576|gb|EGJ32144.1| putative permease [Lyngbya majuscula 3L]
          Length = 230

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 82/226 (36%), Gaps = 16/226 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFI-AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           + YI   +   FL        I   V  +   +  ++    S  I  ++     P  +  
Sbjct: 2   DRYIAAELIPPFLFGVGGFSSIGVAVGSLFDMVVKITELGLSWTIAAQVVLLKFPEFMSY 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + T    + ++ ++EL+ + + G S   L+ P L L+++++   F+   +I P
Sbjct: 62  ALPISVLLATLIAYSRLSNDSELIALRSCGVSLYRLVAPALVLSLVVTGITFLFNELIVP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEEN-------LFFRLDDDLY------IKISKYNPNNTL 170
                      KA      ++ E          F + +             + ++   T+
Sbjct: 122 AANYQATITLEKALNQEKPAFDENGILYPEYQTFPQPNGTTTQTIKRLFYANGFD-GQTM 180

Query: 171 QGIFIVDSRD-TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS 215
           + + +++  +  + +KI  ++S   +  +       G ++  SP +
Sbjct: 181 KDLTVLEWSNLGKLNKIILSESALWNSKQNTWDFFHGSIYFISPNT 226


>gi|116327483|ref|YP_797203.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116331903|ref|YP_801621.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120227|gb|ABJ78270.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125592|gb|ABJ76863.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 386

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 17/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+     + F+ + + +  I  +  +   +   +++      +     Y +P +
Sbjct: 25  LKILDRYLFGEFFKVFIGTVVLLTGIMLLSLVNDNMRNFTTTKAPRYHVALFLVYSLPKI 84

Query: 61  LPM-VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +   V            +   + N EL+ +   G S   ++ P++   IL+ I +     
Sbjct: 85  ISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVAPLILFGILMWIVMLFVTE 144

Query: 120 IIEPKCRSTIK---QLSAKAQLALTFSYLEENLFFRLDDD-LYIKISKYNPNNTLQG-IF 174
           +I        K    +  +    L  S  + ++  +  +   Y+     N +    G  +
Sbjct: 145 LIVRPVNKLAKIEHDILTEGMGTLANSVYQFHV--KGKEGFYYLYFYDPNKDEINGGFNY 202

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTES 232
           I    D     +  +     + + +   +   E        K  S   F  K Y L  + 
Sbjct: 203 IRLRNDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQESFEEKEYELPEDP 262

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
                      + NL  L          +        +E H      +  +I  LI  +A
Sbjct: 263 TYFKIPAGSVEEMNLFQLKEEEKRRIQ-KGLSYGDVLTEKHSVFALPMMTIIVTLIGTIA 321

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIF 350
                  ++   +  + I++ +   +++ F+     + +N    P   +++       + 
Sbjct: 322 ---GYFTKKTAGVASLGITIGVVL-IYYIFNSAGKSLGENGVIPPFVGVWITPSLFLGLC 377

Query: 351 LLMIKK 356
             M ++
Sbjct: 378 FWMFRR 383


>gi|237799874|ref|ZP_04588335.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022729|gb|EGI02786.1| hypothetical protein POR16_13650 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 353

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 109/324 (33%), Gaps = 16/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +   FL     +  I  ++ +   I+ +   + T +L   L       P
Sbjct: 1   MVKLDRYIGKSV---FLAILAVLGIILGLVSLFAFIDEMGDINDTYTLADALSYVFMTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L S+  ++EL I+   G S   ++  V+   + L +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLFLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D      +  S  +     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVSTTHFNEGSTQVINTPEERWDVSLSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAA 293
           ST+++     ++S L +   +    +      Y   F  ++ Q      ++   IS +  
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFG 317
             R++   ++    + +  +    
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRII 315


>gi|270296760|ref|ZP_06202959.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272747|gb|EFA18610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 378

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 138/369 (37%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + A T   ++      +D  +   I ++   +     F +
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D Q      A+S + D        + D  + +   + +  SI K            
Sbjct: 196 DKFNDKQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKE--SITKGDRIDTTLFMEP 253

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 254 ADFLIMKNQQEMLTSPQLSEYISRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
           + K+    +      + I L++SF  +  F  I      N    P++ ++    + +   
Sbjct: 314 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIA 369

Query: 352 LMIKKKYTK 360
             + +K  K
Sbjct: 370 FYLYRKAPK 378


>gi|300770003|ref|ZP_07079882.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300762479|gb|EFK59296.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 359

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 120/359 (33%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  + YI++    +F+ +      +  +  + ++++        ++ I+ +     IP 
Sbjct: 1   MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +      + M   TE++ I + G S   +++P +  A L+    F+   
Sbjct: 61  YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120

Query: 120 IIEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            I P+             +       +      ++D + Y+ I  ++    +   F+++ 
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISA-THMQIDSNTYVYIDNFDTRQKIGYNFVLEK 179

Query: 179 RDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            D    K    A     D       + +      + +++ +     K  TL  + ++   
Sbjct: 180 FDADRLKEKMIADRIRWDSVATKWKIENYTNRVINGLNERMEKADQKDTTLDMKPSDFEK 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N   L             ++     E +KR        I  L+ +     + 
Sbjct: 240 YDNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVS-LSSKK 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +         + I+LS  + V   FS +       P  I ++   L  +S    LM K 
Sbjct: 299 VRGGIGLSLGLGIALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYKA 357


>gi|300023218|ref|YP_003755829.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525039|gb|ADJ23508.1| permease YjgP/YjgQ family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 364

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 130/361 (36%), Gaps = 14/361 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
           +   YI R    + + +      + ++I  ++ + +           LL+I+   +P  +
Sbjct: 6   TLTRYIARMFIVAIVTTLTVCALLIFMIDFVELLRMAGKYGAVPGTTLLRIALLRLPAYI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +  F   + + + L  +NR +EL ++   G S    + P LF+ + + IF     N +
Sbjct: 66  EFLIGFAVLVGSISALIYLNRKSELAVMRAGGMSVWQFLGPGLFVGLAVGIFAMAVFNPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIK--ISKYNPNNTLQGIFI 175
             + R+T ++L AKA          +     +     D   +    +  N   TL G+ +
Sbjct: 126 ASRGRATSEKLYAKAFGNEANLLRAQGGGSWIRQNGADGESVLGAAAASNQGLTLTGVLV 185

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             + D + H      +GS +L      L D  V R     +     KFKSY L T     
Sbjct: 186 F-AYDREGHFSERIDAGSAELKDGYWELQDAWVTRLGQEPE-----KFKSYLLSTYLTPD 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                     ++SF   P       + +L  E  R ++   L + +  +   L++   + 
Sbjct: 240 RVQDALGTVFSISFWDLPELIQAADKAKLSTERLRVQYQSLLVRPMLCLAMVLLAATVSL 299

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +       + +    +   + F +    +  I      P ++      +  ++    +++
Sbjct: 300 RSFRSGGIQTMVATGMIGGVGFFLLSEIARQIGIAGLAPAWVAAWMPVVLVLAISTTVLL 359

Query: 355 K 355
            
Sbjct: 360 H 360


>gi|297565836|ref|YP_003684808.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296850285|gb|ADH63300.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 121/385 (31%), Gaps = 41/385 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+LR I   F       + +     +L R   V      +  LL+  G  IP +
Sbjct: 1   MTRIDRYLLREILPPFFFGIFLYIALIAFSNLLARAQWV--GGVPVTSLLQWIGLQIPFI 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +      + ++R  ELL++   G S +   + +L  A  L+ F       
Sbjct: 59  FTQTLPLATLLGVLIGYSRLSRENELLVMQAGGISVLRTARWILLGAAALAGFSLYLSER 118

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P        +   K     +          ++ D L +  S  N +  +  + +    
Sbjct: 119 VVPWANQQTAVVWWDKVATGTSGLGWLTGRDLKIGDYLLLFDSYDNAHQEIVNVRLQQW- 177

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS----PISKDISIMKFKSYTLQTESANS 235
             QT  + +A+ G +  +   + L    ++       P+    S+ + + Y  Q   A +
Sbjct: 178 KGQTLSVVFAERGRL--ENYQLKLRGFRLYTLDLAKLPVPDFQSLDEVEQYLPQLVRAQN 235

Query: 236 STIVLKAN----------------------DQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            +   +A+                      +            NP   P      R   H
Sbjct: 236 VSRDPQASLVITLPQNRDQLVANFAGGGFENPYPPSHWWRRLQNPTLTPTEAREARVNLH 295

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
             L   L  ++   +++  A +RA          + + L++   + +     + K+    
Sbjct: 296 SALAVSLANLVILFLALPVAARRASS------PAVALGLALGLTIAYYAVLSLGKLMALS 349

Query: 334 YYIPI---LYLFLFCISSIFLLMIK 355
             IP    ++       ++   + K
Sbjct: 350 GLIPAELGVWSANLLAVAVAFWLGK 374


>gi|148651871|ref|YP_001278964.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
 gi|148570955|gb|ABQ93014.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
          Length = 494

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 89/222 (40%), Gaps = 3/222 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +  +   F+V +    ++++   + +     + +L  I GY +P  L 
Sbjct: 24  ILRRYMTRQVASTTALVLGFLVVLLLGGRMIRYFGIAAEGRLDVGLLFSIIGYNLPYFLE 83

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P  F +    V   +  + E+ +++ +G SR  L + ++ L ++L +         +
Sbjct: 84  LVLPLSFFIGLMLVFGRLYVDHEMAVLNGSGISRGRLARLIIPLILVLFVLEAGLSLYGK 143

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGI-FIVDSRD 180
           P      + +  +  L+  F  +    F    DD ++ +   N N T LQ +  I  ++D
Sbjct: 144 PWGVKNSESIWQQQSLSSAFDLIRPQTFIN-SDDYHLYVGSMNDNKTELQDVILIQTAKD 202

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK 222
                   A       +  A+ L   E+   +  ++ +S + 
Sbjct: 203 AAKSVKPGATVPEATTNAPAVRLGQQELEGSNSANQSVSSID 244



 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 16/197 (8%)

Query: 180 DTQTHKIYYAQS-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D     I  A+      GS +  +  + L  G  +     S   S + F+ Y +      
Sbjct: 272 DDDRDIIVLAKRAVQVKGSEESGKTQLDLFQGRRYEVGADSLVYSQIGFERYRISINQPP 331

Query: 235 SSTIVLKA-NDQNLSFLLNP-------NPNNPNYRPELLETY--RSEFHKRLTQWLFPVI 284
           +  +  +    Q++  L             + +  PE  +    ++E   RL      ++
Sbjct: 332 ADVLTEENVTTQSVPALWKAATGQKVATKADGSTEPEPQQILSAQAELGYRLALPWLIIL 391

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             ++++  A  +    +  ++ P  +  +    V       I K   +    P++ L  F
Sbjct: 392 APMLAVPLAQVKPRQGRWLRLLPAILIFTSCVLVIISLKNAITKGTLSVLSYPLV-LIGF 450

Query: 345 CISSIFLLMIKKKYTKI 361
            + +++L    + + ++
Sbjct: 451 IVLALYLNWASRIHHRV 467


>gi|330950945|gb|EGH51205.1| permease YjgP/YjgQ [Pseudomonas syringae Cit 7]
          Length = 353

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 16/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+  +   D     L D      +  S  +     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEANFKTD--YWELKDVTTTHFNDGSTKVINTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAA 293
           ST+++     ++S L +   +    +      Y   F  ++ Q      ++   IS +  
Sbjct: 233 STLIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFG 317
             R++   ++    + +  +    
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRII 315


>gi|78212778|ref|YP_381557.1| permease [Synechococcus sp. CC9605]
 gi|78197237|gb|ABB35002.1| possible permease [Synechococcus sp. CC9605]
          Length = 386

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 122/330 (36%), Gaps = 20/330 (6%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           + + +  +      + I +++  + IP  L    P    M +  V T ++ N+EL  + +
Sbjct: 45  MFELVRQMVDKNLPITIAVQVLLFSIPRWLAFSVPIGTLMASLFVFTRLSANSELTALRS 104

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS----TIKQLSAKAQLALTFSYLEE 147
            G + + +I   L L++++++F F+  +++ P+ +     T+K+   ++  + T   +  
Sbjct: 105 LGITTVRMISAALALSMVMTLFTFVLNDVVVPRSQRYAEVTLKRSLGRSLASETGRDIIY 164

Query: 148 NLFFRLDD----------DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
             F    D          +      K+  +  +  + ++D   +   ++  A     + D
Sbjct: 165 PRFGTRFDSDGEEDGKGLNQLFYSRKF-QDGEMADVTVLDFTRSGFTQMLRADRAIWNED 223

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS---FLLNPN 254
           + +    DG++   +  +   +   F  Y     S       ++ +  N++    L    
Sbjct: 224 QASWDFLDGQILTLA-ANGSSTKADFDRYVYPLGSGPVRLAGIEKDAVNMTVAEALQAQR 282

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
                   +     R    ++ T  +  ++FGL       + +    R     + + + I
Sbjct: 283 LYEEAGSIKEARKIRVRIQEKFTVPMACLVFGLFGATLGAQPSYRSSRSFSFVLTLGI-I 341

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           +     GFS+    ++     I   +L + 
Sbjct: 342 AVYYVIGFSFSSLGVKGTLPPILAAWLPVM 371


>gi|330752158|emb|CBL87118.1| predicted permease YjgP/YjgQ, transmembrane [uncultured
           Flavobacteria bacterium]
          Length = 359

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 125/349 (35%), Gaps = 14/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           M   + YI      SF +    ++ IA V  I Q+++   +    ++ I++      +  
Sbjct: 1   MNRLDRYIFFRFLGSFFLFLGLVMMIAVVFDISQKVDNFINKNADISTIIIDYYVNFLAF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                +     + T  V   M R++E++     G S   LIKP L  A++L I      +
Sbjct: 61  YGTTFSSLIVFLSTIFVTGRMARDSEIVAALTGGVSFPRLIKPFLLGALVLFIGNSTLSH 120

Query: 120 IIEPKCR-STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            + PK   + I       Q  +    +  N+  ++  D YI I  ++P   L G      
Sbjct: 121 FVIPKTNIARIHFEDTYVQDKIIKRPI--NIHRQVLPDHYIYIETWSPE-RLGGYHFSYE 177

Query: 179 RDTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESAN 234
           R      I    A     D  ++   +++    R    S ++ +   +        +   
Sbjct: 178 RFENDRMIEKLMADFVRYDTSQKQWQVDN-WTLRTWLKSGEMKLESGRRLDTSFAFDPTT 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S  +   +      LL           E + ++  E+HKR+    +P    ++  +A  
Sbjct: 237 ISPDLRSTSTMTSPQLLKYLKKERISGSEAITSHEMEWHKRIA---YPFSVFILVFIAVV 293

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             +  R+      I I L I+  ++  F  +   +   P +   + ++L
Sbjct: 294 LSSEKRRGGIGGQIAIGLLIAV-IYIFFMQLGGVLVSIPIFSAFMAIWL 341


>gi|291616052|ref|YP_003518794.1| YjgQ [Pantoea ananatis LMG 20103]
 gi|291151082|gb|ADD75666.1| YjgQ [Pantoea ananatis LMG 20103]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 135/360 (37%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + LM+   +V ++ +I+ + ++        S       +   +P  +
Sbjct: 23  RVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQGAYSALDAGYYTLLSVPKDI 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 83  EIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +   A+          +  L+ +  ++ +I I +   ++ + G+ I + + D
Sbjct: 143 APQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNN-FIYIERVKGDDEIDGVSIYNFTDD 201

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   + YA +   + D++  +L+   E +   P     S      +           + 
Sbjct: 202 RRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGVVA 261

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  +++ L + +        +    YR     ++ Q L   +  L+++        +
Sbjct: 262 LDPDALSITGLYDYSK-YLKQSGQESGRYRLNMWSKIFQPLSVAVMMLMALSFIFGP--L 318

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +   +S  F  +     F  +       P +  IL  F F   S+F+L+ ++
Sbjct: 319 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAISLFMLIKRR 378


>gi|160888237|ref|ZP_02069240.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
 gi|317480118|ref|ZP_07939228.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
 gi|156862183|gb|EDO55614.1| hypothetical protein BACUNI_00646 [Bacteroides uniformis ATCC 8492]
 gi|316903665|gb|EFV25509.1| hypothetical protein HMPREF1007_02345 [Bacteroides sp. 4_1_36]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 138/369 (37%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 20  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWNAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + A T   ++      +D  +   I ++   +     F +
Sbjct: 140 YVIPKGSVTRINFEDKYYKPRKANTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D Q      A+S + D        + D  + +   + +  SI K            
Sbjct: 196 DKFNDKQLVSHLTARSITYDTTAVHKWKIKDYMIRQMDGMKE--SITKGDRIDTTLFMEP 253

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 254 ADFLIMKNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
           + K+    +      + I L++SF  +  F  I      N    P++ ++    + +   
Sbjct: 314 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNMPPVIAVWIPNIMYAFIA 369

Query: 352 LMIKKKYTK 360
             + +K  K
Sbjct: 370 FYLYRKAPK 378


>gi|292493020|ref|YP_003528459.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
 gi|291581615|gb|ADE16072.1| permease YjgP/YjgQ family protein [Nitrosococcus halophilus Nc4]
          Length = 354

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 123/356 (34%), Gaps = 6/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ + +  + L+  L ++ +   ++ +  +  V      +   L+ + Y IP  
Sbjct: 1   MKILDRYVAKAVISNTLLVLLVLIALYTFVEFITELEEVGEGNYGVMDALRYTAYSIPQY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L S+   +EL+ +   G S   + +  L   ++  +   +   +
Sbjct: 61  IYDLLPVAALLGSVLGLGSLAGQSELVAMRAAGFSVGRITRSALATGMIFVVVTILMGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +     L + A+        E   F+  +++ + +I +  PN   Q I I +  +
Sbjct: 121 LAPPAKQAANTLRSLAKTGHLSEQAERG-FWTRNNNNFNRIGRVLPNGQYQDIEIFEFDE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++    +G+    R    L+D      S        +    +           +++
Sbjct: 180 QHRLRVISRAAGA-TYHRDGWHLSDITQRIISSQGITTRRLPEALWESSLSPEMLDVVMV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADKRAL 298
                +   L     +      +  E Y+  F  ++        ++F  I  +    R++
Sbjct: 239 DPQQLSAWGLYR-YIDYLEENKQATEQYQQAFWSKVFAPFNTLIMMFLAIPFIFGPLRSV 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
              ++ +    + +   F     F+ +    E + +        LF    + +L  
Sbjct: 298 SMGQRILVGALVGIGF-FLFNRLFNQLGLVFEFSSWLAAAFPSLLFFGLGMVMLRR 352


>gi|330899516|gb|EGH30935.1| permease YjgP/YjgQ [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330975730|gb|EGH75796.1| permease YjgP/YjgQ [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 353

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 110/324 (33%), Gaps = 16/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D      +  S ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAA 293
           ST+++     ++S L +   +    +      Y   F  ++ Q      ++   IS +  
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFG 317
             R++   ++    + +  +    
Sbjct: 292 PLRSVTLGQRVFTGVVVGFTFRII 315


>gi|171914738|ref|ZP_02930208.1| permease YjgP/YjgQ family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 576

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 132/373 (35%), Gaps = 21/373 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  E Y++R   +  +   +    +  V+ +L  +     +  S   ++     LIP + 
Sbjct: 176 KILERYVMRSFLQPVMFCFIAFCTLWIVMDLLDNMQDFQENKISRAQIVMFYIKLIPFIF 235

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P    + T   L  M+R  EL+ +  TG S   ++KP   +A   S+    +    
Sbjct: 236 VTVAPISLLLSTLYTLGRMSRTNELISMLGTGKSMFDVLKPFYVIACCASLLGMAANYHW 295

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEEN-LFFRLDDDLYIKISKYNPN---NTLQGIFIVD 177
            P      ++L    +  +  ++L    ++   +D     + +   +   + ++ I I  
Sbjct: 296 APVSAGNKEKLLENVKERIGKNFLVMGLMYRNQEDRRTWFVGQVPEDLRGDRMRRIEIRQ 355

Query: 178 SRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK----SYTLQTES 232
             D       ++A+S     DR+      G V       + +++  F        +  E 
Sbjct: 356 EDDQGRLVKGWFAKSAFWWPDRKVWSFYSG-VEVTYKNGQVVAMQNFDAGGGHPRIDFEG 414

Query: 233 ANSSTIVLKANDQNLSFLLNPN-----PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
              +  +L +      +L  P+       N  Y    L  Y +    R T     ++  L
Sbjct: 415 WTETPWILLSGTLVPDYLGVPDLISYIRGNSAYGQRKLAPYLTHLFYRFTFPWQCLVVVL 474

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLF 344
            +   A    +  +R  +  + +++   F + +  +  ++  + N   P+    L   L 
Sbjct: 475 FA---APLSVVFSRRGLVGGLSMAVIFFFVLMFMDNLFLNLGKSNVIPPFISVWLPHLLL 531

Query: 345 CISSIFLLMIKKK 357
               I+L  ++ +
Sbjct: 532 GSIGIYLFKLRSQ 544


>gi|289663727|ref|ZP_06485308.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 360

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 123/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG            D  +MKF S  +      
Sbjct: 180 QNDRINVVTADRGAMFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +   T R++ H+RL   L         +    
Sbjct: 240 RVHDANDPEVMWTTQLLS----------DERPTARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|227538454|ref|ZP_03968503.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241736|gb|EEI91751.1| permease YjgP/YjgQ family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 359

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 119/359 (33%), Gaps = 5/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           MK  + YI++    +F+ +      +  +  + ++++        ++ I+ +     IP 
Sbjct: 1   MKIIDWYIIKKYLSTFVFTMAIFTVVMVIFDVSEKLDNFLQYKAPISKIVFQYYAGFIPF 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  ++P    +      + M   TE++ I + G S   +++P +  A L+    F+   
Sbjct: 61  YLNFLSPLINFIAVIFFTSKMADQTEIVPILSGGMSFNRMLRPYMIAASLIFAVTFVFNI 120

Query: 120 IIEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            I P+             +       +      ++D + Y+ I  ++    +   F+++ 
Sbjct: 121 YIIPRTNKMKVSFENVYVKPDKAGGSISA-THMQIDSNTYVYIDNFDTRQKIGYNFVLEK 179

Query: 179 RDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            D    K    A     D       + +      + + + +     K  TL  + ++   
Sbjct: 180 FDGDRLKEKMIADRIRWDSVATKWKIENYTNRVINGLHERMDKADQKDTTLDMKPSDFEK 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   N   L             ++     E +KR        I  L+ +     + 
Sbjct: 240 YDNMFTAMNTDELSKRIDKEETRGTGMMTELLLEKYKRYIYPFSAFILTLMGVS-LSSKK 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +         + I+LS  + V   FS +       P  I ++   L  +S    LM K 
Sbjct: 299 VRGGIGLSLGLGIALSFVYIVLIQFSTMFSLKGGLPPLIAVMIPNLIFLSLGLYLMYKA 357


>gi|212636934|ref|YP_002313459.1| permease YjgP/YjgQ [Shewanella piezotolerans WP3]
 gi|212558418|gb|ACJ30872.1| Permease YjgP/YjgQ [Shewanella piezotolerans WP3]
          Length = 352

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 132/349 (37%), Gaps = 15/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  +LYI + +  S  +S L +  ++ +I+ + ++ LV   T S+        +LIP  
Sbjct: 1   MRILDLYIAKVLISSSSLSLLILTGLSGIIKWVDQLRLVGRGTYSMMDAGIYVLFLIPRD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M  P    +     +  +  N+EL+++ ++G SR+ +    +  AI L I + +    
Sbjct: 61  IEMFFPMAVLLGALTGMGMLASNSELVVMQSSGLSRLQIALSAMKTAIPLMILVMLLSEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++        +       ++ + D DL++ I     +N L+ I + +  D
Sbjct: 121 VAPVAEVRAKEIQRTQISGGSLIESTRGVWAK-DGDLFVNIGGVVDSNNLRDITLYEFDD 179

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           T       +A++       +   L D            ++ +    +         S + 
Sbjct: 180 TTNLTSTVHAETAKYM--GKFWQLYDVRRTSLKSEQVVLTNLDEDKWISSLTPEKLSVVS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  LL+   +      +    Y     ++L Q +   +  L+++         
Sbjct: 238 VKPESLSIEGLLD-YLDYLKNNKQASARYELALWRKLMQPVTIAVMMLVALSFVFGP--- 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                +  + +   +  GV  GFS+ I      P  I  +Y     IS+
Sbjct: 294 -----LRTVTMGARVLLGVVAGFSFYICSEVFGPLSI--VYGLPAFISA 335


>gi|332307891|ref|YP_004435742.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175220|gb|AEE24474.1| permease YjgP/YjgQ family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 353

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 134/363 (36%), Gaps = 18/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  
Sbjct: 2   IKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPRE 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    
Sbjct: 62  LEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P   +  K++  +A       +  + L +  D D ++ I +    N L+ + I +   
Sbjct: 122 VAPISETKAKEIRTQAISG-GSLFSSDRLVWAKDGDNFVSIGEVVDKNNLRDVSIYEFDN 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           D    KI  A++ +   D   +        +D  +H +       S              
Sbjct: 181 DLYLRKITTAEAANYQSDSWELSHVQSTEFSDNRIHVEDAADGAWSS--------SLTPD 232

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               + +K    ++  L++   N      +  E YR    +++ Q +   +  L+++   
Sbjct: 233 KLGVVTVKPEALSIRGLID-YVNYLENNSQNSERYRLALWRKVLQPISVGVMLLMALSFI 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                         + +     F V       +  +   P +I  + L     + I + +
Sbjct: 292 FGPLRSVTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAI-LPSIVFTGISIHL 350

Query: 354 IKK 356
           +++
Sbjct: 351 LRR 353


>gi|327396303|dbj|BAK13725.1| inner membrane protein YjgQ [Pantoea ananatis AJ13355]
          Length = 358

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 135/360 (37%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + LM+   +V ++ +I+ + ++        S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTILMTLFMLVSLSGIIKFVDQLRKTGQGAYSALDAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +   A+          +  L+ +  ++ +I I +   ++ + G+ I + + D
Sbjct: 123 APQGEQMARNFRAQQLYGGALVSTQSGLWAKDGNN-FIYIERVKGDDEIDGVSIYNFTDD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   + YA +   + D++  +L+   E +   P     S      +           + 
Sbjct: 182 RRLQSVRYAATAKWNKDKKLWVLSQVDESNLTDPKQITGSQSLTGEWKTSLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  +++ L + +        +    YR     ++ Q L   +  L+++        +
Sbjct: 242 LDPDALSITGLYDYSK-YLKQSGQESGRYRLNMWSKIFQPLSVAVMMLMALSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +   +S  F  +     F  +       P +  IL  F F   S+F+L+ ++
Sbjct: 299 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPIFGAILPSFAFFAISLFMLIKRR 358


>gi|91204094|emb|CAJ71747.1| hypothetical protein kustc1002 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 578

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 114/296 (38%), Gaps = 32/296 (10%)

Query: 2   KSFELYILRCIGRSF---LMSCLFIVFIAWVIQIL-QRINLVSSSTESLNILLKISGYLI 57
              + Y++R   ++F    +    ++F+ +VIQIL + +++++      ++ ++++ Y I
Sbjct: 52  NILQRYVIREWFQTFWPSFLCFEILMFLGFVIQILHKGLDIIALKALIPHMFIQVAPYSI 111

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+             TT     ++ + E++ I  +G     +I PVL + I+ S F  + 
Sbjct: 112 PS--------ALLTATTLTYGRLSADREIIAIQASGIHLRKIITPVLVIGIIFSFFTLVL 163

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYL---EENLFFRLDDDLYIKISKYNPNNTLQGIF 174
              I P+    IK L  +A   +    L   ++ +         I I     +N  + + 
Sbjct: 164 SAEILPRSLYQIKLLQERAINNILAGRLATFQKKVLMEPYQ---IYIGNVV-DNINKDVT 219

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKD--ISIMKFKSYTL 228
           ++   D     I  A+ GSI+++ +     + L  GE  + +    +    +  F   T 
Sbjct: 220 VIQYADDYVTDIIIAEEGSIEVNNEKNTIFLTLRKGEFIKPNYKKAEEVPRLGVFTETTF 279

Query: 229 QTESANSSTIVLKANDQNLSFL------LNPNPNNPNYRPELLETYRSEFHKRLTQ 278
           +                 +  L      ++    N    P+  E  R E  ++L +
Sbjct: 280 EIPMGKDKA-DFSTKHMTIFQLFKYNNEIDRELANSKEIPDNFEEARVEASRKLAE 334



 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 237 TIVLKANDQNLSFLLNP-----NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           T  L+  ++N+S LL       +      + +L        HKR++Q L  + F +I I 
Sbjct: 448 TKSLEETEKNISVLLRKITSFESDLTLASKKKLRRKNDISIHKRISQALSCLSFIVIGIP 507

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              K            + I   +SF +     Y +           +L +      +  +
Sbjct: 508 LGIKLRSSH-------LIIGFGVSFMIILFIYYPLMVTGSVLADDTLLPVVPVLWGANGI 560

Query: 352 LMI 354
           L+I
Sbjct: 561 LLI 563


>gi|320352233|ref|YP_004193572.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
 gi|320120735|gb|ADW16281.1| permease YjgP/YjgQ family protein [Desulfobulbus propionicus DSM
           2032]
          Length = 360

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 124/362 (34%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL    R+  M     + +  +I   ++I+      +S +++       IP +
Sbjct: 1   MILLYRYILAHFLRNLGMIMASFITLYLLIDFFEKIDNFLEKGKSFSLIATFFFANIPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +++P C  +     L  +N + EL+ +   G     +  P++  A+  ++     +  
Sbjct: 61  IDLMSPVCILLAGVVTLGVLNHSNELIALKACGIPLKKITVPIIGAALACTLLFLAMDQY 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + PK  +   Q  + + +  +         ++    + +   S+ +P   L   F     
Sbjct: 121 VLPKTIAVTNQIWNKEIKGKVPLGIYRNGRYYYRGQEGFYSFSRPDPQKNLFKNFSYTVW 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS--T 237
           D +        +     ++    L +G++  K+      +   F +  +           
Sbjct: 181 DKEHAANTLIAAEIAVWNKGVWTLRNGQIQ-KAAGGDRFATQVFTNRRINFPETPDDFFV 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              ++ + +L  L     +  +   E      ++F+ R++     +   L+ +       
Sbjct: 240 PAYRSMELSLVQLYKETQHTRS--EEERSKAWADFYGRIS--YTLLGLPLLLLGLPLLLL 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY----LFLFCISSIFLLM 353
           + R+  +   + I +S          Y   +      YIP L     + L      F L+
Sbjct: 296 VYRKWGRDLSLAIPVSCGMAFLCWGVYTTLQSLAKASYIPPLAAAISVHLLVGCVGFFLL 355

Query: 354 IK 355
           ++
Sbjct: 356 LR 357


>gi|291514726|emb|CBK63936.1| Predicted permeases [Alistipes shahii WAL 8301]
          Length = 367

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 121/363 (33%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ I  V   +++I+  +     L +++L      IP  
Sbjct: 9   KILDRYILGKFLSTYFFAIAMIIVIVVVFDYVEKIDDFTELHAPLKSVILDYYLNFIPYF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A++++         
Sbjct: 69  INQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLTLNLW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +  I     +       +  + +++ +++  ++  I  YN        F+++  +
Sbjct: 129 LIPISQRHIVAFEQQYIKRKQNTKYDRHIYRQIEPGIFAYIRGYNDGARQASFFVLERYE 188

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSST 237
           + T      A     + + +          R+   +   +  +F++    +  E+     
Sbjct: 189 SGTMTHSLEASDAKFNPETKRWTAPR-YTKREFDSAGTETFEQFRNLDTLINLEATELGE 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I       N+S L            + +     E H R    L   I  LI +       
Sbjct: 248 INDLIQTMNISELNAFLDQQRAKGSDSINLIEVEKHARYAYPLSTFILTLIGVSL----- 302

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLLM 353
             R+ +    + I +       +  F+    +  ++    P L ++L     +     L 
Sbjct: 303 SSRKVRGGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLGIAVYLY 362

Query: 354 IKK 356
            K 
Sbjct: 363 RKA 365


>gi|119357818|ref|YP_912462.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
 gi|119355167|gb|ABL66038.1| permease YjgP/YjgQ family protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 358

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 116/348 (33%), Gaps = 12/348 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R    SF  +    + +  +I +++ ++           +       IP+ 
Sbjct: 1   MKLLDRYIFRQFAVSFFFASAAFIALFILISMVENLDEFIDLGIGPGKITGYYLSSIPST 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + +P    +    V   ++  +EL  I + G S   L+KP +    ++     ++   
Sbjct: 61  LMVTSPVAALLSAILVAGKLSAMSELSAIKSAGISLKQLLKPFVLGGTIICSINMLNSCW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL--DDDLYIKISKYNPNNTLQGIFIVDS 178
           + P       +++ +         L+ N    +    +  + I +   N + +G+ I   
Sbjct: 121 LGPAA--AADKIAFERTSFNRTQNLQANSNMHILESGNRIVSIGELLINQS-KGLHISIE 177

Query: 179 RDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKF-KSYTLQTESANS 235
           +   T       +  +  D+     +L +      +  ++   +     +  +     + 
Sbjct: 178 QFNGTRLSTRMDAPEMIFDQNVHKWVLKETSSRSFTGNNEQYHLNPGNDTLGMAMSLKSL 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             + ++ ++ N+                 L+  + + H ++      +I  LI +     
Sbjct: 238 RKLNVQPDEMNILEHYRYTREKDKAGFSGLDRAKVKLHAKIALPFASLISILIGVPL--- 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            + +R+R      F        ++ G    I  I       P +  +L
Sbjct: 295 -STIRKRGGKAAEFSITLFIGFLYLGLQKTIATIGYTGLLEPWIAAWL 341


>gi|218551559|ref|YP_002385351.1| hypothetical protein EFER_4344 [Escherichia fergusonii ATCC 35469]
 gi|218359101|emb|CAQ91762.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324112113|gb|EGC06091.1| inner membrane protein yjgQ [Escherichia fergusonii B253]
 gi|325499820|gb|EGC97679.1| hypothetical protein ECD227_3917 [Escherichia fergusonii ECD227]
          Length = 360

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 126/363 (34%), Gaps = 15/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    +E L+ +   + ++ I +      L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQEGLWAKDGKN-FVYIERVKGEKELGGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   I YA S + D D +   L+   E    +P     S     ++        
Sbjct: 181 NDQR--RLQSIRYAASATFDPDNKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                          IS    F V    F  +       P    +L    F + S++LLM
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLM 357

Query: 354 IKK 356
            + 
Sbjct: 358 RRA 360


>gi|218661972|ref|ZP_03517902.1| putative permease protein [Rhizobium etli IE4771]
          Length = 115

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRGVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           +P+V PF   +  T  LT+MN ++EL +ID  G  R  LI+P+L 
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAAGARRSILIRPILL 115


>gi|189465688|ref|ZP_03014473.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
           17393]
 gi|189433952|gb|EDV02937.1| hypothetical protein BACINT_02049 [Bacteroides intestinalis DSM
           17393]
          Length = 378

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 137/361 (37%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       +P 
Sbjct: 20  LKRLDFYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMSHEAPWKAIVFDYYLNFVPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 80  FANLFSPLFVFISVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVVTFCLGS 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 140 YVIPKGSVTRINFEDKYYKQRKSNTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D        + D  +     + ++  I+K            
Sbjct: 196 DKFKDKQLVSHLTARSITYDTASVHKWTIKDYMIREMDGMKEN--IVKGDRIDSILFMEP 253

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + ++   L              ++ +  E+HKR+       I  LI +  
Sbjct: 254 ADFLIMKNQQEMMTSPELSEYISRQRQRGFANIKEFELEYHKRIAMSFASFILTLIGVSL 313

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           + K+    +      + I L++SF  +  F  I      N    P++ +++  I   F+ 
Sbjct: 314 SSKKT---KGGMGLHLGIGLALSFS-YILFQTIASTFAVNGNVPPVVAVWIPNILYAFIA 369

Query: 353 M 353
            
Sbjct: 370 F 370


>gi|21244280|ref|NP_643862.1| hypothetical protein XAC3555 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109928|gb|AAM38398.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 360

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 124/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T K +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTAKAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG       S  + D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RVHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|84387841|ref|ZP_00990856.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
 gi|84377356|gb|EAP94224.1| hypothetical protein V12B01_07608 [Vibrio splendidus 12B01]
          Length = 356

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 135/361 (37%), Gaps = 14/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      +P  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMIVVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L   +         +  ++ R  +D +I + K +              + 
Sbjct: 123 APQAQKMARDLRTISIAGGNIISTQSGVWARDAND-FIFVVKIDDEKLYGLNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANS--ST 237
                 Y++      D     +ND E+        +I I K    +Y+ +T  A    + 
Sbjct: 182 ALKTAIYSEEVDYVGD-NVWTMNDVEITSFE---NEIQITKESLPTYSWKTSLAPDKLAI 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADK 295
           + +K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    
Sbjct: 238 VTVKPEELSLSGLYD-YVSYLKASEQDASRYELALWRKITQPISIAVMMLMALSFIFGPL 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R++    + +  +    +  F +   F   +  + Q P     L   +  +    +L+ +
Sbjct: 297 RSVTMGARILSGVIAGFT--FYISSEFFGPVSLVYQIPPAFGALAPSVVFLGIAIMLLRR 354

Query: 356 K 356
           K
Sbjct: 355 K 355


>gi|28868484|ref|NP_791103.1| hypothetical protein PSPTO_1273 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968382|ref|ZP_03396526.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301384648|ref|ZP_07233066.1| hypothetical protein PsyrptM_18507 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058899|ref|ZP_07250440.1| hypothetical protein PsyrptK_02847 [Pseudomonas syringae pv. tomato
           K40]
 gi|302133012|ref|ZP_07259002.1| hypothetical protein PsyrptN_16559 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28851722|gb|AAO54798.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927020|gb|EEB60571.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|331015231|gb|EGH95287.1| hypothetical protein PLA106_04712 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 353

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 117/362 (32%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +   FL     +  I  ++ +   I+ +   + T +L   L       P
Sbjct: 1   MVKLDRYIGKSV---FLAILAVLGIILGLVSLFAFIDEMADINDTYTLVDALSYVMMTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWSVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D           ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVSTTHFKEGRTEVVNAPDERWDVSLSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L +   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L      +   L + 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLIPAAACAFAGLYLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|269468373|gb|EEZ80038.1| permease [uncultured SUP05 cluster bacterium]
          Length = 360

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 138/367 (37%), Gaps = 14/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + + +  L   + +V I    + L+ +  +  ++ +L   L   G LIP++
Sbjct: 1   MKILDRYIAKTLLKYSLSVMVVLVGIFAFFKFLEEVGDIGRASYTLFDALAYVGLLIPSI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  ++     +     L  +  N+EL+I+   G S + + K  L ++++  + + I    
Sbjct: 61  VYALSSLIILLGCILGLGYLAGNSELIIMRGAGISVVEITKTTLKVSLVFIVIMIIFGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           I P      K+  A+A      S  ++  F+  D + +I++ K       + I  I  + 
Sbjct: 121 ISPLFSDYAKKYRAQALGESVISSSQQG-FWLRDGNNFIQVDKNIDGRIFEKITLINLNT 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS-- 235
            +    + Y+       D + ++L     H+ +   +   I     + Y  +        
Sbjct: 180 PSTLDSVVYSDKA--VFDGKNMVLQKSNYHQINSDQEFAAIDQKTLQQYLTEVAFDQELI 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAA 293
            ++  +  + +   L        +      + Y  E ++R+ + L  +   +++   V  
Sbjct: 238 KSLKKEPKEFSTWQLFRR-VQFLSNNDLSADIYEVELYQRIMKPLTLIAMIILALPFVFG 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R     RK    + ISL        G    +     +  ++    L    +  + + M
Sbjct: 297 SLRDSSLGRKIFTGVVISLFFELSSRLGGMISLRF---DLNHLLSASLPTIVVFVLAIFM 353

Query: 354 IKKKYTK 360
           +++  T+
Sbjct: 354 LRRVSTR 360


>gi|332530550|ref|ZP_08406488.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
 gi|332039996|gb|EGI76384.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
          Length = 373

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 132/366 (36%), Gaps = 25/366 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+  I + + RSF  + + +V +   + +++ +   S    +   ++ + GY + T +P
Sbjct: 2   LFDSSIRKELARSFGGTVIVLVTVLVTMTLIRVLGQASRGNFNPADVMLVMGYTVVTFMP 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            +      +     L+ +  ++E++I  ++      L+  +L  A  + + + +   +  
Sbjct: 62  SMMSLALFVAVVMTLSRLYADSEMVIWFSSRVGLARLLPALLRFAWPVLLAIALLSLLAL 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ--GIFIVDSRD 180
           P  +S I +L  +         +E   F    D   +   +      L+   +F+  + +
Sbjct: 122 PWAKSQINELQRQFSQRNDLERIEPGQFQTSADGSRVFFIEKGDIGELKANNVFVA-TDE 180

Query: 181 TQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL---QTESANS 235
                +  A+ G   +    + +IL  G+          + + +F+ Y +   Q    + 
Sbjct: 181 GNKKTVISARQGYTELVGGDRFLILEHGQRLETRADEPGMRVAEFEHYRMLVVQDPLGDG 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               L A    L  LL P+  N             E   R+   L  V   LI    A  
Sbjct: 241 GPTSLGAR-PTLDLLLTPSRENLG-----------ELSMRVGHPL--VALQLIIFALAYT 286

Query: 296 RALVRQRKKIHPIFISLSISFG---VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           R   R  +  + I   +        +  G S+I         ++ +++  L   + ++L 
Sbjct: 287 RVNPRVSRTGNLILSLMLFQILQNMINIGQSWIRQGAVNFWAFMLLMHGGLLLAAMVWLA 346

Query: 353 MIKKKY 358
           +  + +
Sbjct: 347 LRHRAW 352


>gi|42524172|ref|NP_969552.1| hypothetical protein Bd2760 [Bdellovibrio bacteriovorus HD100]
 gi|39576380|emb|CAE80545.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 359

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 127/362 (35%), Gaps = 12/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y        F+   L  + +   +  +    +V+    + + L+    Y  P +
Sbjct: 1   MNRIDRYTAWLFVGYFVGGLLVFLTLFTAVDAMS--TMVNYKDVAPSALVNYYLYSFPGI 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     LTS+N+  EL+ +  +G S I +  P+L L  ++S   +++ + 
Sbjct: 59  ISQLLPVACLLGVILTLTSLNKANELVALFASGMSLIRIAVPMLLLVAVISALGYMAADR 118

Query: 121 IEPKCRSTIKQLSAK--AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD 177
           + P+       +      +    FS +  +  +    +    I   N      QG+ +  
Sbjct: 119 VLPRATKQKNYILYYDLKKEPHRFSTIRTDRIWYRSKNSIFNIKTLNAKGDGAQGLTMYF 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS- 236
             D +   +    +  + +     +L  G V   +  S       FK+ ++     +   
Sbjct: 179 FSD-EWDLVQMITAAQVKIQGAQWLLEQGTVTIFNKDSSFPLTSPFKTKSIVMAEDSKDL 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +  D      L    +           Y  ++H +++     ++  L+ I  +  R
Sbjct: 238 QSAGQTADMMSQKELEHFIDKNKAAGLDTVAYEVDYHSKISFAFAGLVMCLLGIPFSVGR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMI 354
           A  R    +  + I L++ F  +  F      + Q+    P+   +     +  +  +++
Sbjct: 298 A--RSGGTMLNVGICLALVFAYYV-FYSSGITLGQHGTLPPVAAAWAPNIVMLGVAFVLL 354

Query: 355 KK 356
           KK
Sbjct: 355 KK 356


>gi|183219955|ref|YP_001837951.1| hypothetical protein LEPBI_I0537 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910079|ref|YP_001961634.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774755|gb|ABZ93056.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778377|gb|ABZ96675.1| Conserved hypothetical protein; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 378

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 130/361 (36%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++ + Y+     ++F+ + + +  +  + +    +  + SS  + + +     Y +P+++
Sbjct: 19  RTLDRYLFFDFFKTFIGTLIMLTSMIVIYKFTDVMKYLVSSKVNQSHVYLHVLYSLPSMV 78

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL-SIFLFISENI 120
             V           V+   + N EL+ +   G S + +I P+LF  I++  +     + +
Sbjct: 79  DQVVAPALMFSVCFVIGQFSVNKELVAMMVAGVSFMRIITPILFFGIVIWLVMTLFGQIV 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++   Q S  A+ +         L  +     Y         NT++G F      
Sbjct: 139 VIPANKNAQIQFSIMAKGSNRLIDFVYQLHIKGKKGFYYVYWIDEKENTIKGGFNYFEIT 198

Query: 181 TQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF--KSYTLQTESANSS 236
              +  Y   +Q         + +L D E  R +   + +S  K+  K+Y    + A  S
Sbjct: 199 PDGYPTYTVSSQKAKFIPSPHSWVLYDAEEVRFNENLELVSRTKYAEKTYDFPEDLAYFS 258

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +    + N   L +    +   +         + H   +  L   +   +    A   
Sbjct: 259 KPIRNPEEMNFFELAD-EIQSRITKGIPFRNVIVQQHMAFSMPLMSFVVVTLG---ALAG 314

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLLMIK 355
           A+ ++   +  + +++++    +   S      E     I I +++     ++    + +
Sbjct: 315 AITKRSAGVASLGLTIAVVLLYYILNSTAKTLAENGALPIWIGMWITPVIFTTAAYYLYR 374

Query: 356 K 356
           K
Sbjct: 375 K 375


>gi|109899861|ref|YP_663116.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
 gi|109702142|gb|ABG42062.1| permease YjgP/YjgQ [Pseudoalteromonas atlantica T6c]
          Length = 353

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 131/356 (36%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + YI R +  +  MS   +V ++ +I+ ++++  V   +  + +        +P  
Sbjct: 2   IKILDWYIARTLLSTTAMSLGVLVGLSALIKFIEQMKSVGRGSYDMTVAAVYVFLSLPRE 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     +  +  N+EL+++ + G SR  +I   +  AIL+ +F+ +    
Sbjct: 62  LEQFFPMATLIGGLIGMGILASNSELVVMQSAGQSRWNIIISAMKSAILMVLFVMVIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  K++  +A       +  + L +  D D ++ I +    +TL+ + I +  +
Sbjct: 122 VAPVSETKAKEIRTQAISG-GSLFSSDRLVWAKDGDNFVSIGEVVDKDTLRDVSIYEFDN 180

Query: 181 TQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I  A+S +     +   L+  +    S     +      ++           + 
Sbjct: 181 ELYLRQITTAESATYQ--DKTWELSHVQSTEFSDNRIQVQDAADGAWASSLTPDKLGVVT 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L++   N      +  E YR    +++ Q +   +  L+++         
Sbjct: 239 VKPEALSIRGLID-YVNYLENNSQNSERYRLALWRKVLQPISVGVMLLMALSFIFGPLRS 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                   + +     F V       +  +   P +I  +   +        L+ +
Sbjct: 298 VTMGARVIMGVLTGFGFFVSNEVFGSLSTVYHIPPFIGAILPSVVFTGISIHLLRR 353


>gi|148977743|ref|ZP_01814299.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
 gi|145962957|gb|EDK28227.1| hypothetical protein VSWAT3_21150 [Vibrionales bacterium SWAT-3]
          Length = 356

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 134/359 (37%), Gaps = 10/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGFSVLKTAIPLMIVVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L   +         +  ++ R  +D +I I K + +            + 
Sbjct: 123 APQAQKMARDLRTISIAGGNIISTQSGVWARDAND-FIFIVKIDDDKLYGMNMWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
                 Y++      D     + D  V       + I+     +YT +T  A    + + 
Sbjct: 182 ALKTAIYSKEVDYVGD-NVWTMKDVVVTSFENELQ-ITKENLPTYTWKTSLAPDKLAIVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  +    +  F +   F   +  + Q P    +L   +  +    +L+ +K
Sbjct: 299 VTMGARILSGVIAGFT--FYISSEFFGPVSLVYQIPPAFGVLAPSVVFLGIAVMLLRRK 355


>gi|91792233|ref|YP_561884.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
 gi|91714235|gb|ABE54161.1| permease YjgP/YjgQ [Shewanella denitrificans OS217]
          Length = 351

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 130/349 (37%), Gaps = 15/349 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LYI R I  +  +  L +  ++ +I+ + ++ LV   + ++        +LIP  + 
Sbjct: 2   ILDLYIARAILATSSLCLLILTGLSGIIKWVDQLRLVGRGSYTMIDAGIYVLFLIPRDIE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  P    +     +  +  ++EL+++  +G SR+ +    +  A+ L + + +      
Sbjct: 62  MFFPMAVLLGALIGMGMLASSSELVVMQASGMSRLQISMSAMKTAVPLMLLVMVLGEWGA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT- 181
           P    + K+L A      +       ++ + D DL++ I +    N+L  I + +  +  
Sbjct: 122 PVAERSAKELQATKLSGGSLIKSHRGIWAK-DGDLFVNIGEVETVNSLNNITLYEFDEAM 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           +  K+ +AQ      +   +      V     I+     +  +S+           + +K
Sbjct: 181 KLVKVIHAQEAQFKDEAWQLQQVKTTVFSDEKITLVEQPL--QSWNSSLTPDKLGVVSVK 238

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
               ++  LL+   +      +    Y     +++ Q +   +  L+++           
Sbjct: 239 PEALSIQGLLD-YLDYLEVNQQDPSRYNLALWRKIMQPVTIAVMMLVALSFVFGP----- 292

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
              +  + +   +  GV  GF + I      P  I  +Y     + +I 
Sbjct: 293 ---LRTVTMGARVLLGVVAGFGFYISNQIFGPMSI--VYELPAAVGAIA 336


>gi|150024706|ref|YP_001295532.1| hypothetical protein FP0611 [Flavobacterium psychrophilum JIP02/86]
 gi|149771247|emb|CAL42716.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 361

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 132/363 (36%), Gaps = 9/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YIL+    +FL+  L  + I   + I ++IN +  +   ++ +L      I   
Sbjct: 2   LTILDKYILKRYLATFLVMLLLFIPIGITVDIAEKINKILENKVPIDKVLSYYVDFIIYF 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +        +  NTE++ I ++G S    ++P +  A ++S F  +    
Sbjct: 62  TNFLFPIFLFLSIIWFTAKLANNTEIIAILSSGISFSRFLRPYIIGATIVSFFALLMGFF 121

Query: 121 IEPKCRSTIK--QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + PK     K  +                +++ ++ +  +I +S ++        F+ + 
Sbjct: 122 LAPKASEGFKNFRYLYLIGNGKDEMRETNDVYRQISETEFIYVSNFDIEAKTAYNFVFEK 181

Query: 179 RDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            + +       A S   +   +   L +        ++  I     K      +  + + 
Sbjct: 182 FNAEKLVYKISASSIQWNSKEKTYTLLNYSKRTVGALNDKIETENSKPMKFNFDLEDLTP 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +V  A   + + L              + TY    +++ +  +   I  +I++      +
Sbjct: 242 VVYIAETLSFTDLNKFIEKEKKRGSANINTYLVVKYRKYSIPISAFILTIIAVAV---SS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           + R+      + I ++I+F   +    F+ +  K    P     +  F+F I + +LL  
Sbjct: 299 MKRRGGMGMNLAIGIAIAFSYIFLDKIFATLAEKSSIEPIIAIWIPNFIFGILAFYLLRN 358

Query: 355 KKK 357
            K+
Sbjct: 359 AKR 361


>gi|170723396|ref|YP_001751084.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
 gi|169761399|gb|ACA74715.1| permease YjgP/YjgQ family protein [Pseudomonas putida W619]
          Length = 353

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 131/361 (36%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++      +    P  
Sbjct: 1   MVKLDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMDAGWFTLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++     D ++ I+   PN  L G+      D
Sbjct: 120 VAPISENKAQADRSLAQGGGEAQSSKRGMW-HRQGDEFVHINSVQPNGLLLGVTRYRFDD 178

Query: 181 TQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      +A+    + D    +L+D           ++     + + +       +T+V
Sbjct: 179 ERKIVTSSFARRARYENDH--WVLSDVSTTYFRGDHTEVVKSSEERWDVSVTPQLLNTVV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAADKRA 297
           L     +++ L +   +  + +      Y   F  ++ Q      ++   IS +    R+
Sbjct: 237 LAPESLSITGLWD-YIHYLSDQGLNNARYWLAFWTKVLQPAVTAALVLMAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKK 356
           +   ++    +F  + + F        ++    Q   + P+L  +    + ++  L + +
Sbjct: 296 VTLGQR----VFTGVLVGFVFRIAGD-LLGPSSQVFGFPPLLAVVIPAGVCALAGLWLLR 350

Query: 357 K 357
           +
Sbjct: 351 R 351


>gi|70728450|ref|YP_258199.1| hypothetical protein PFL_1068 [Pseudomonas fluorescens Pf-5]
 gi|68342749|gb|AAY90355.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 353

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 125/361 (34%), Gaps = 17/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI   +  + L     I+ +A    +   I+ +   + T ++  ++       P
Sbjct: 1   MVKLDRYIGSSVFMAILAVLGIILGLA---SLFAFIDEMGAVNETYTVVDVMSYVALTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +  + P    +     L S+  N+EL I+   G S   ++  V+   ++L +   +  
Sbjct: 58  RRVYEMLPMAGLIGCLIGLGSLASNSELTIMRAAGVSVGRIVWAVMKPMLVLMLVGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FI 175
             + P   +  +   A AQ +      +  L+     D +I I+   PN  L G+     
Sbjct: 118 EYVAPATETQAQASRALAQGSGDAQSSKHGLW-HRQGDEFIHINAVQPNGLLYGVTRYHF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   +    +A+      D     L D           ++  +  + + +       
Sbjct: 177 DDQRHMLSSS--FARQARFHED--YWQLTDVTTTYFRDGHTEVISVPGERWDVALSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAA 293
           ST+V+     ++S L     +    +      Y   F  ++ Q L    ++   IS +  
Sbjct: 233 STVVMAPESLSISGL-WGYIHYLADQGLNNGRYWLAFWVKVLQPLVTAALVLMAISFIFG 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R++   ++    + +  +            +     +P +  ++   +  ++ ++LL 
Sbjct: 292 PLRSVTLGQRVFTGVLVGFTFRIAQDLLGPSSL-VFGFSPLFAVLVPAGICAVAGVWLLR 350

Query: 354 I 354
            
Sbjct: 351 R 351


>gi|85713125|ref|ZP_01044158.1| Predicted permease [Idiomarina baltica OS145]
 gi|85693041|gb|EAQ31006.1| Predicted permease [Idiomarina baltica OS145]
          Length = 355

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 129/357 (36%), Gaps = 5/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI   + ++ LMS + +  ++ +I+ ++++  V   +  +        Y IP  +
Sbjct: 3   SILDRYIGATVLKTSLMSLIVLTGLSGLIRFVEQLKSVGRGSYEVIDAALFVFYSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     +  +  N+EL+++   G S++ +   V+  A+++ I +      +
Sbjct: 63  EVFFPMAALLGGLIGMGVLASNSELIVMQAAGRSKLNIAGAVMKTAVVMMIAVIAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P   +  + + A+     +    +  ++ +  DD +I IS+      L G+ I D    
Sbjct: 123 APPMEAKGRLIRAQEISGGSLISAQRGVWAKDGDD-FINISEVEDTGRLNGVLIYDFDGQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q   + YAQ+       ++  L+     R +        +    +           + +
Sbjct: 182 QQLETVTYAQTA--VYSNESWRLSQVVETRLTQQKVIEKRLDSTVWQSSLTPDKLGVVTI 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           K    ++S L++          +  + Y     +++   +   +  L+++          
Sbjct: 240 KPESLSISGLID-YLTYLKSNEQSAQRYELALWRKVLSPVTVAVMLLVALSFIFGPLRET 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  + +    +F V       + ++ Q P  +  L   L   S    +M +K 
Sbjct: 299 SMGARILLGVITGFAFHVSNEIFGPLAQVYQVPAVLGALLPSLVFASVAIFVMQRKS 355


>gi|332187143|ref|ZP_08388883.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
 gi|332012843|gb|EGI54908.1| hypothetical protein SUS17_2304 [Sphingomonas sp. S17]
          Length = 366

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 131/364 (35%), Gaps = 26/364 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI-------LLKISG 54
           ++  +Y+ +            +V +      LQ ++++S S   L         + +   
Sbjct: 10  RTIAIYMAKMFLLRTFAILFALVIV------LQALDILSESGAILATPGNGEAQVWRYVS 63

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
              P ++  + PF   + T     +MN+N+E++ +   G S   ++ P+L  +  +++  
Sbjct: 64  LRAPQIIAFILPFSVLLGTILTFFTMNQNSEVIALKAAGLSAHQVLAPLLVASAGVAVLS 123

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTF-SYLEENLFFRLDDDL--YIKISKYNPNNTLQ 171
           F   + I P+  +T+          +   S    N++ R  DDL     +     N  L 
Sbjct: 124 FAFNDRIVPRATATLSAWQKVDYGPIPIDSGDRSNVWVRDGDDLISVDLVQGRGANTQLG 183

Query: 172 GIFIVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ + D +   +   I  A  G    D   I    G   R    S  ++ +         
Sbjct: 184 GVTLYDRKGGGSLQAIVRAPRGRRMGDGWQI----GPATRFEVASGKLTSIPSMIIGRGV 239

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +   + A+  +   L N   ++        +T       +L+  +  ++  L+  
Sbjct: 240 TPEQLTLASVNADGLSFKGLSN-AIDDLREAGRPTKTLEGSLWHKLSAPMSAILMPLLGA 298

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP----YYIPILYLFLFCI 346
           VAA   A   +      I ++L  +F V   FS  +  +   P     + PIL  FL   
Sbjct: 299 VAAFGIARSGKLFVRAVIGMALGFAFFVADNFSMAMGDLGAYPPFLAAWAPILLFFLIGE 358

Query: 347 SSIF 350
           + +F
Sbjct: 359 AVLF 362


>gi|218710647|ref|YP_002418268.1| hypothetical protein VS_2727 [Vibrio splendidus LGP32]
 gi|218323666|emb|CAV19977.1| hypothetical permease [Vibrio splendidus LGP32]
          Length = 356

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 131/359 (36%), Gaps = 10/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L   +    +    +  ++ R  +D +I I K + +            + 
Sbjct: 123 APQAQKMARDLRTISVAGGSIISTQSGVWARDAND-FIFIVKIDDDKLYGLNMWRYDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKFKSYTLQTESANSSTIV 239
                 Y++      D     + D EV       +    S+  F S+         + + 
Sbjct: 182 ALKTAIYSKEVDYVGD-NVWTMRDVEVTSFENEIQVTKESLPTF-SWETSLAPDKLAIVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  +    +  F +   F   I  + Q P     +   +       +L+ +K
Sbjct: 299 VTMGARILSGVIAGFT--FYISSEFFGPISLVYQIPPAFGAIAPSVVFFGIAIMLLRRK 355


>gi|258648441|ref|ZP_05735910.1| putative membrane protein [Prevotella tannerae ATCC 51259]
 gi|260851193|gb|EEX71062.1| putative membrane protein [Prevotella tannerae ATCC 51259]
          Length = 428

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 128/364 (35%), Gaps = 9/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNIL-LKISGYLIPT 59
           +   + YI+     +++     I+ IA +    ++I+    +  S   +        IP 
Sbjct: 67  LTRLDRYIIYKFLSTYIFLIGIIISIAIIFDYNEKIDKFEKAHVSWTKIAFDYYLNFIPY 126

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L++P +  A ++++  F    
Sbjct: 127 FSNLFSPLFVFIAVIFFTSKLADNSEIIAMKSTGMSFRRLLRPYMISAAIIALTSFGLGA 186

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + PK          +    L      EN+  ++D  + + IS+++    +  G  +   
Sbjct: 187 YVIPKGNVARVNFENRYIKKLNAPTSVENVQMQVDTGVVVYISRFDNETKSGYGFSLDKF 246

Query: 179 RDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +      AQS    ++   +    L   +  +   + + IS        +  E  + 
Sbjct: 247 YGKKLIDHLTAQSIQYDTLAGKKNQWTLRQVQQRKMRGLRERISYADKVDTIIMMEPQDF 306

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +  +     +  L              +  +  E+HKR        I  LI +     
Sbjct: 307 FYVRNQQETMTVPELRQFIDKQQMRGAAGVSLFEVEYHKRFAMPFAAFILTLIGVS---L 363

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +  R+      I + +++SF  +  F  I      N  + P+L +++  +  + +    
Sbjct: 364 SSQKRKNGMGTSIGVGIALSFS-YILFQTISSSFAVNANWSPMLSVWIPNLLFVLIAFGL 422

Query: 356 KKYT 359
            K T
Sbjct: 423 YKRT 426


>gi|315185938|gb|EFU19702.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6578]
          Length = 361

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 108/356 (30%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    + L      F  + +  V I  +I +   +     +  +   +L +    +P  
Sbjct: 1   MRIITRFALSWFLPLFFAALVSFVTILELIDLFTNLVAYIDADLTTFQILHLQLLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L S++ + EL+ +   G S    + P +   +L S   F  E +
Sbjct: 61  VTYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           +     +  ++L A      + + +        ++ L +   +Y+  + T+  + + +  
Sbjct: 121 LAIPSLTQKQELMAILMGRTSPTQVVNVTLVGEENRLVVHTRRYDDRSRTITRVLVYEKD 180

Query: 180 DTQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +         A+ G+ D +++  +L     + +     ++    F+              
Sbjct: 181 EEGAFASRIEAERGTWDPEQREWVLQRVRRYIRDEE-GNLKEESFEKLRTDLGEIQPEDF 239

Query: 239 --VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                + D+                        ++++KR++      I  L++   A + 
Sbjct: 240 LQTRHSIDKMTLAEAGRWIQTLKRAGLPYREALTDYYKRISFAFTSFIVALLASSVAGRF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                   +          +      +         P     L + +F   SI   
Sbjct: 300 KANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFF 355


>gi|78049236|ref|YP_365411.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925501|ref|ZP_08186892.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037666|emb|CAJ25411.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544093|gb|EGD15485.1| putative permease [Xanthomonas perforans 91-118]
          Length = 360

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 124/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG       S  + D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RVHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|254498610|ref|ZP_05111329.1| permease [Legionella drancourtii LLAP12]
 gi|254352150|gb|EET10966.1| permease [Legionella drancourtii LLAP12]
          Length = 354

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 119/358 (33%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI + +  S  +  L +V +  +  +  ++  +      +          +P  
Sbjct: 1   MRILDRYIAKTVLTSIGLVTLMLVGLQILFYLFDQLGDLGKLDYGITQAAFFVLMQMPYQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L +M  ++EL+++  +G S + +   VL  ++LL   + +    
Sbjct: 61  VYLFFPMASLLGCLIGLGAMANHSELVVMRASGMSILQITGAVLKASVLLIFLVTVLGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P            A ++   +      F+    + +I + +  PNN LQ   I   R 
Sbjct: 121 VVPYLSHYANDYKT-ASVSGGQTIRTAKGFWLRHGNDFISVGRILPNNVLQN--IYQFRF 177

Query: 181 TQTHKIYYAQSGS-IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            + H +  A+         Q  +  + +                  + +  +    +   
Sbjct: 178 DEQHHLKLARLIREAKYSEQGWVAYNVQQTEFVVDHTRAQTFATLPWDVPVKPKILNISS 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           ++ ++  L  L N          + +  Y+  F +R+ Q    ++  +++I         
Sbjct: 238 IEPDEMTLHEL-NRYIREQKRSHQNVHNYQFAFLQRIIQPFTTMVMMVLAIPFIFGPLRS 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   +  ++   F +   F   +  + Q P  +  L            LM + +
Sbjct: 297 STMGSKLLVGAAVGFGFHILSRFFGPVSSVFQLPAGLAALGPTFLFALLGLYLMRRVR 354


>gi|221133511|ref|ZP_03559816.1| predicted permease [Glaciecola sp. HTCC2999]
          Length = 354

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 121/356 (33%), Gaps = 8/356 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              ++YI R +  +  ++   +V ++ +I+ ++++  V      L +      + +P  +
Sbjct: 3   SIIDIYIARTLLSTIFVTLSTLVGLSALIKFVEQLRKVGEGDYDLIVAGLFVFFSLPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     +  +  N+EL+++  +G S+  +I+  +  A+++   + +    +
Sbjct: 63  EQFFPMATLLGGLIGMGVLASNSELIVMQASGMSKWNIIQSAMKCAVVMVCIILLVGEFL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P   +  KQ+  +A          + ++ +   D ++ I        L  + I   + D
Sbjct: 123 TPVSEAKAKQIRTEALSGGQVFTSNKIVWTKDGSD-FVSIGNVFNQENLGDVTIYKFNDD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +I  A+  +   +  +  L D  +   +      + +    +         S   +
Sbjct: 182 LDLTQIIAAKRATFVEE--SWALQDVHITYINDQRISTNRISLTEWRAALTPDKLSVATV 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K    ++  L            +    Y     +++ Q +   +  L++   V    R+ 
Sbjct: 240 KPEALSIQGLYE-YVGYLQNNQQDSTRYELAMWRKILQPVSVCVMLLMAFSFVFGSLRST 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               + I       S  F     F          P    I+   LF   ++ LL  
Sbjct: 299 TMGSRIIVGTLTGFSF-FIANEVFGPFAMVYNLPPMLGAIVPSALFAGVAVLLLRR 353


>gi|118474326|ref|YP_891923.1| YjgP/YjgQ permease [Campylobacter fetus subsp. fetus 82-40]
 gi|118413552|gb|ABK81972.1| putative permease, YjgP/YjgQ family [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 341

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 133/356 (37%), Gaps = 28/356 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+      +F      +  I  ++  +Q   + S    S + LLK+  +++P +
Sbjct: 1   MNKVNKYLFASFLSTFASLFATLFLIMSIVFFIQIARITSYIEISFSELLKLYLFMLPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +        +++  E +++   G     +    +F++ ++S+ + I+  I
Sbjct: 61  LLFTIPIGFFVSVAMSFFRLSKENESIVMFTLGQDPKNISNFFIFISFIVSVVMLINSLI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVD 177
           + P  +  +     + +       ++ + F +      + I K N NN     + I + D
Sbjct: 121 VMPIAQ-NLNDNFIEYKKTKLSLNIKPSEFGQKFGSWMVFIEKQNDNNDSLKYENIVMYD 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             D        +QSG I        +IL  G+++       +IS   +++  ++T   ++
Sbjct: 180 VSDENERL-ITSQSGDIKNQNSNLELILKKGKMYDIRDNKWNIS--SYENMVIRTLIKDN 236

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                   +  L        ++   +   + T  +         LFP+   + ++     
Sbjct: 237 KNETYSLKEYWLKAF----SDDKRAKDLSIYTLVA---------LFPLASVMFALSF--- 280

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  + +K    F    + F     F++I+    Q  Y IPI+++  F  S++  
Sbjct: 281 GIVTYRYEKGIIYFGIFGVLFAY---FAFIMLFARQPIYAIPIIFIVSFVFSALTF 333


>gi|83644757|ref|YP_433192.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632800|gb|ABC28767.1| predicted Permease [Hahella chejuensis KCTC 2396]
          Length = 353

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 122/358 (34%), Gaps = 6/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI+  +  + L+  L ++ +  V   +  ++ + +  ++L   +K   + +P  
Sbjct: 1   MRRIDRYIVATVASAMLLVLLVVLSLDLVFAFIAEMDELKNDYQTLQA-MKYIIFTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +  N+EL +I   G S + ++   +  A+ + +   +    
Sbjct: 60  IYDYLPLAAFIGCLVGLGVLANNSELTVIRAAGVSVVRVVWSTMKPALAVVVVGILVGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +   A  Q A         ++ R + ++++  +   P   L G+ + +  D
Sbjct: 120 VAPQTERIAQTQKALEQGAAENVASSAGMWRR-EGNVFMHFNAVEPKGVLHGVSLFEFND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   +  +A+      D    +L D E          +       + +    +    ++
Sbjct: 179 ERRMVRSTFAKRAIYQGDH--WLLQDIERTEIKDDGSHVQTFDSLRWNVSLSPSILEVLI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K    ++  L     N    +     +Y   F K++ Q +   +  L++I         
Sbjct: 237 IKPEYLSIKGLYT-YANYQEEQGLDANSYLMAFWKKVLQPVATSVLVLVAISFIFGPLRS 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     I + + F            +      I  L     C     +L+ + +
Sbjct: 296 VTMGFRVFCGIIIGLLFKYMQDLLGPASLVFGFNPVIATLAPICICALLGVVLLRRVR 353


>gi|262401790|ref|ZP_06078355.1| putative membrane protein [Vibrio sp. RC586]
 gi|262351762|gb|EEZ00893.1| putative membrane protein [Vibrio sp. RC586]
          Length = 356

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 137/359 (38%), Gaps = 10/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K +              + 
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVDNEQLTGMNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +A+      + +  ++ D ++ R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFAERVDYVGNNE-WLMKDAQLTRLVSDI-EISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLSGLSD-YVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 299 VTMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAVAPSLVFLTIALGLLGRK 355


>gi|91788271|ref|YP_549223.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
 gi|91697496|gb|ABE44325.1| permease YjgP/YjgQ [Polaromonas sp. JS666]
          Length = 381

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 131/387 (33%), Gaps = 36/387 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS-SSTESLNI-------LLKI 52
           M++    I   +  +  +  L  + + +   ++  +  +  ++  S           L  
Sbjct: 1   MRTIRRLIYGEVLTAIALVALGFLALFFFFDLVDELQYLGKNNGLSAAADIYQIRHALLY 60

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
              LIP  L  + P    + T  V+  + +++E  I+  +G      ++ +L L      
Sbjct: 61  VALLIPNHLYELLPISVLIGTIFVMARLAQSSEYTILRTSGLGPWRALRLLLVLGAAFVT 120

Query: 113 FLFISENIIEPKCRSTIKQLSAKAQLALTF----SYLEENLFFRLDDDLYIKISKYNPNN 168
             F   + + P      + L A+ Q  +T     ++L+E    +  +   + + +  PNN
Sbjct: 121 LSFAVGDYVAPTSERAAQLLKARYQSKITVGQTGAWLKEK---QPYNSYVVNVKELTPNN 177

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-----------PISKD 217
            ++G+ I +  +            +      A +L                         
Sbjct: 178 EMKGVQIFEFDNKGLIVSTTQAPVAQFTGGDAWMLKQASRAEFDVPASPADISKPQNGAR 237

Query: 218 ISIMKFKSYT--LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           +S    +++    +  +   S  +LK    +   L N    + N   +  + Y  EF K+
Sbjct: 238 VSRTTLQTFRWPTEISAEMVSVALLKPERMSTLDLFN-YVRHLNANGQTAQRYEIEFWKK 296

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQN 332
           +   L  ++  ++++  A      R       +F  + I    F     F YI +     
Sbjct: 297 VFYPLSCLVMVMLALPFA--YLHFRSGGIASYVFAGVMIGISFFLLNNVFGYIGNLRNWQ 354

Query: 333 PYYIPILYLFLFCISSI--FLLMIKKK 357
           P+        ++   S+  F  ++ ++
Sbjct: 355 PWLAAATPGLMYMAVSLGAFGWLVLRR 381


>gi|90580730|ref|ZP_01236533.1| putative permease [Vibrio angustum S14]
 gi|90437998|gb|EAS63186.1| putative permease [Vibrio angustum S14]
          Length = 357

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 131/357 (36%), Gaps = 5/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +F ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   ++  +      +    +  ++ +  D+ +I + + +  N +  + I    + 
Sbjct: 123 APQAQKMAREYRSAWVYGGSVIAAQNGVWAKN-DNSFIYMGRVHDLNKVDVVNIWQFDNK 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
                +  A+  S D  +    ++D  +   +  ++   S +  K +         + + 
Sbjct: 182 GQLDDVTSAKRASYDKAK-GWTMHDVTITDMTGSNQLTNSHIANKHWETTLTPDKLAVVT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  + +LS L +   N      +    Y   F ++  Q +   +  L+++         
Sbjct: 241 VKPEELSLSGLYH-YVNYLKETKQDASRYELAFWRKALQPVSIAVMMLLALSFVFGPLRS 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                     +    +F +       +  + + P  +  L   L  +     L+ +K
Sbjct: 300 VTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPILGALGPSLAFLFITIYLLRRK 356


>gi|320101899|ref|YP_004177490.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
 gi|319749181|gb|ADV60941.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
          Length = 507

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 89/218 (40%), Gaps = 13/218 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + Y++R +  SF ++ L I  I  +  ++      + +   L+ +++I+ YLIP  
Sbjct: 4   IGILQRYVIRQLLGSFALALLAISSIIVLFLVMA---EAAKAGLGLDQIVQIAPYLIPGT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP   P       T V   +  + E+  +   G S  T++ P + L+I+LS  L+++ + 
Sbjct: 61  LPYTVPVALLFSVTVVYGRLAGDNEITAVKAAGLSVWTVLWPCILLSIVLSGALYLAASH 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--- 176
           + P+    +K++     +   T     + +    +    I +     ++ +  +F     
Sbjct: 121 VIPEANHAVKRVIFSNYEQTFTTFLRRDRILNNPNWPFVIIVKDMEGDDLIAPVFKRRAK 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVH 209
            + RD        A+   +  D +     + L D  + 
Sbjct: 181 INGRD-GFDLNIVAKRARLSFDMERAMVRVFLVDATIQ 217


>gi|15602062|ref|NP_245134.1| hypothetical protein PM0197 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720420|gb|AAK02281.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 356

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/365 (13%), Positives = 135/365 (36%), Gaps = 20/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+ + I  +   + + +V ++ +I+ +++   V   T  +   +  +   IP  
Sbjct: 2   MSTLDRYLGKSILGAIFATLIMLVGLSGIIKFVEQFRSVGKGTYDIWQAILYTVLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+++  +G SR+ +   V+  A+ L I   +    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVVMQASGFSRLKIGFAVMKTALPLVILTMLIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSR 179
             P+     + + +KA    +   ++  ++ + D + +I I +   +  L  ++I   + 
Sbjct: 122 GIPQTEQFARDMRSKAISGGSLLSVKNGIWAK-DGNEFIYIKRITDDIALSDVYIYRFAE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF-----KSYTLQTESAN 234
           + Q  ++ +A + +    +  +       HR +  +   + +         +        
Sbjct: 181 NRQLQQVKHANTATYQEGKWIL-------HRLTESAISENEITTVNRVNAEWQTNLTPDK 233

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                L+    ++S L N          +  + +   + ++L Q L   +  ++++    
Sbjct: 234 LGIASLRPTSLSISGLSN-YITFLRETGQESKKFELTYWRKLFQPLSVGVMMMLALSFIF 292

Query: 295 KRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               +R       I   +   F  +     F  +       P    ++   LF + + +L
Sbjct: 293 GP--LRSVTAGARIVTGICFGFLFYVVNEIFGPLSLVYNVTPLAGALMPSVLFLLITWWL 350

Query: 352 LMIKK 356
           L  K+
Sbjct: 351 LSRKR 355


>gi|301346207|ref|ZP_07226948.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
          Length = 201

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 75/194 (38%), Gaps = 4/194 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2   IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +    V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + 
Sbjct: 62  LILPLGFFIGLMLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--R 179
           P      ++L+    +   F  +    F        I     + +   L+ IF      +
Sbjct: 122 PWGLREFEKLTTTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAK 180

Query: 180 DTQTHKIYYAQSGS 193
           + +   +  A+  +
Sbjct: 181 EGKPDVMILAKEAT 194


>gi|118580062|ref|YP_901312.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118502772|gb|ABK99254.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 359

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 140/365 (38%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI     R  L+     + I  V+ +++RI        +L  + +   + +P +
Sbjct: 1   MTIIDRYIAMTWLRLLLLCQGSFLSIYLVLDMMERIPRFLRVQGALVDIARFFAWKLPEM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +     F   M T   L  + R++E++ + + G S   +  P+L L   +S+ L ++  +
Sbjct: 61  IGQTAAFSVLMATLLTLGLLTRSSEIVAMRSCGISLPRISLPMLLLGGGVSLLLLVNAEL 120

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
           I P     + ++     +     +  + N  +   D+  ++   ++P +  L+G+ +   
Sbjct: 121 IVPDSYERMSRIERVDIKKQAGSAVFKRNNIWFRSDNRIMQARLFDPRSQVLRGVVVWSL 180

Query: 179 RDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                      A+S  +    ++ +L   E+   +     + + K  + ++         
Sbjct: 181 DQYTNPLSRLDAESAELR--GESWLLRGVELKEFTAGEGVV-VRKLPTRSIDLNLKVDDL 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            VL  N  NLSF       +   +    +  YR+  H +    L  ++  ++ I  A + 
Sbjct: 238 RVLDKNADNLSFGKLREYADNLRKGGYEDFKYRTMMHTKFAAPLSALVMVILGIPFALRG 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
              R       +  S++I F  F   + ++    ++    P++  +    LF +  ++L 
Sbjct: 298 --SRSGGVAMGVGASVTIGFAYFVVNAVLLS-YGRSGVLPPLVAAWGANFLFILGGLWLT 354

Query: 353 MIKKK 357
           M  + 
Sbjct: 355 MSIRN 359


>gi|217322882|ref|YP_002327178.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
           AB307-0294]
 gi|213986547|gb|ACJ56846.1| hypothetical protein ABBFA_003302 [Acinetobacter baumannii
           AB307-0294]
          Length = 294

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 16/284 (5%)

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
             V   +  + E+ +++ +G SR  L + ++ + ++  +   +    + P      ++L+
Sbjct: 1   MLVFGRLYVDHEMAVLNGSGVSRHQLARLLIPMTLVYMVCQSVLMLWMTPWGLREFEKLT 60

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDS--RDTQTHKIYYAQ 190
               +   F  +    F        I     + +   L+ IF      ++ +   +  A+
Sbjct: 61  TTQAVRTGFDLVRPREFISSGP-YTIYAGSLSEDRKNLKDIFFYQRAAKEGKPDVMILAK 119

Query: 191 SGS---IDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             +   +  D   ++ L  G  +   P     +  +F+SY L+ E+           +  
Sbjct: 120 EATRVEVANDTANVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEAL 179

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
            +  L    N+P          RSE   RL      +I  ++S+  ++      +  ++ 
Sbjct: 180 STSKLFSKANDPVV--------RSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLI 231

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           P     +    +       I K E + +  P+  L     +++F
Sbjct: 232 PSIFIFASLIVLMIAIKTRISKGELDIWAYPVALLVYAIAAALF 275


>gi|330962174|gb|EGH62434.1| hypothetical protein PMA4326_26817 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 353

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 122/362 (33%), Gaps = 16/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLPDALSYVMMTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L S+  ++EL I+   G S   ++  V+   +LL I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ        +  L+ R  ++ +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENKAQAARSLAQGLGDAQSAKHGLWHRQGEE-FIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D R   T    +A+      D     L D      +    ++     + + +       
Sbjct: 177 DDQRHMLTSS--FAKEAHFKTD--YWELKDVTTTHFNDGRTEVINTPDERWDVSLSPQLL 232

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           ST+++     ++S L +   +    +      Y   F  ++ Q    V   L++I     
Sbjct: 233 STVIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFG 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              +R       +F  + + F        +        +   +  L    + ++  +++ 
Sbjct: 292 P--LRSVTLGQRVFTGVVVGFTFRIIQDLLGPSSLLFGFPPLLAVLLPAGVCALAGVLLL 349

Query: 356 KK 357
           ++
Sbjct: 350 RR 351


>gi|294625211|ref|ZP_06703852.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600485|gb|EFF44581.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 360

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 124/362 (34%), Gaps = 19/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTADAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG       S  + D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RVHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R+  RQ++    +   L+   G                     L+     + ++ +   
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVWTY 347

Query: 355 KK 356
            +
Sbjct: 348 AR 349


>gi|261211061|ref|ZP_05925350.1| putative membrane protein [Vibrio sp. RC341]
 gi|260839562|gb|EEX66173.1| putative membrane protein [Vibrio sp. RC341]
          Length = 356

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 134/358 (37%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIITLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K +    +         + 
Sbjct: 123 APQAQKLARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVDNEQLIGMNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +   + +A+      + +  ++ D  + R  + I      +    +         + + +
Sbjct: 182 KLSTVIFAEEVDYIGNNE-WLMKDVHLTRMVNDIEISKEALPEYRWHTSLAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    R++
Sbjct: 241 KPEELSLSGLSD-YVHYLKASEQDASRYELALWRKVTQPISIAVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++    L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGAIAPSLVFLTIALGLLGRK 355


>gi|257095655|ref|YP_003169296.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048179|gb|ACV37367.1| permease YjgP/YjgQ family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 357

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 133/368 (36%), Gaps = 22/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y+ R +  + L+  L  + +     +L  I  V      L+         IP  
Sbjct: 1   MKLYRRYVGREVMGAVLLVLLGFLALFAFFDMLGEIRNVGQGGYQLHHAFAFVLLRIPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+++ R++E+ ++  +G S   L+  +  +A +L++  F+    
Sbjct: 61  VYELMPIAVLIGTLYALSTLARHSEITVLRVSGLSSGGLLTVLFQVAGVLAVLTFLIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI--VDS 178
           + P       QL +K +  +    L   L+ + D+  +I +    P+  L+GI I   D 
Sbjct: 121 VAPPSERAAFQLRSKERTGMVGQDLRSGLWVK-DERSFINVRIVLPDTRLRGIRIFEFDE 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI------ILNDGEVH-RKSPISKDISIMKFKSYTLQTE 231
                     A+   +  D   +      +L  G    R  P  +  S +          
Sbjct: 180 DAKLRSMTEAAEGEYVVPDSWRLTNVVQTVLEGGRAEVRSVPDMQWRSALN--------- 230

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +   ++L + D+     L+    +     +    Y   F K++   L  ++   +++ 
Sbjct: 231 -PDILAVLLVSPDRMSLRHLSAYTKHLADNHQTTNRYDIAFWKKVIYPLAGLVMVALALP 289

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIF 350
                + V        + + +   F +  G    +  I   +P         LF +++  
Sbjct: 290 FGGAHSRVEGVGLKIFVGVMIGTLFHMLNGLFSNLGAINHWSPLLSAATPSILFLLAATA 349

Query: 351 L-LMIKKK 357
           +   ++K+
Sbjct: 350 MIWWVEKR 357


>gi|166713424|ref|ZP_02244631.1| hypothetical protein Xoryp_18795 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 360

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 122/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPTRMLRPLLMLVVPVVVIIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG            D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGALFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RLHDGNDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|294664573|ref|ZP_06729915.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605657|gb|EFF48966.1| YjgP/YjgQ family permease [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 360

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 124/358 (34%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPRRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T + +   A  ++  + LE   F  L     + +   + +   L  +F+   +
Sbjct: 121 LGPWASRTAEAMLEDANRSVLMAGLESGQFTPLSGGGVVYLQTISADGKGLGKVFMQ-RQ 179

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRK--SPISKDISIMKFKSYTLQTESAN 234
                 +  A  G++       + + L+DG       S  + D  +MKF S  +      
Sbjct: 180 QNDRIDVVTADRGAMFFEGKTDRYLRLDDGYRTEGPASGATLDYRLMKFASSDIALPDRT 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                        + LL+          +     R++ H+RL   L         +    
Sbjct: 240 RVHDANDPEVMWTTQLLS----------DERPAARAQLHERLAPPLL--ALAFALLTLPL 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R+  RQ++    +   L+   G                     L+     + ++ + 
Sbjct: 288 SRSAPRQQRYGRIMLAFLAYMVGTNLMIVGTQWIANGKTPAALGLWWLTLPLLAVAVW 345


>gi|94500484|ref|ZP_01307015.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
 gi|94427274|gb|EAT12253.1| hypothetical protein RED65_15478 [Oceanobacter sp. RED65]
          Length = 354

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 118/360 (32%), Gaps = 12/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S L     +  +  VI +L +++ +   T +    L       PT 
Sbjct: 1   MRKIDAYIRSSVINSILAVLFVLGMLDLVIALLNQLDNL-RDTFTFADALYYVVASAPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL  I   G S   ++   +  + ++ +   +    
Sbjct: 60  LYEMIPMITLIGCLVGLGSLATHSELTAIRAAGVSTGRIMLSTIKASAIMMVLSLVMGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P            A         E    +  + + Y++ +   PN  L G+ + +  D
Sbjct: 120 IVPDLERMTTSFRTIALGREVAVTNEGKGHWHKEGNNYMRFAAIEPNGVLHGMTLYEF-D 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              +      +      R+   + +  +     +  +        +  +        +  
Sbjct: 179 ENKNLTKMTHAKRAIYQREHWSMENVRITHIEDVRTEYKAKSIAPFDTELTPETLKFVAQ 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           +  D  +S L        + +      ++  F K+L Q +  +   L+    +    R++
Sbjct: 239 EPKDMAISTLYKYG-QYLDAQGLGGGEFKLAFWKKLLQPISTLALVLVGISFIFGPLRSV 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIF-LLMIKK 356
              ++    I + L     V      ++  I       P+L  L    +  I+   M+++
Sbjct: 298 TMGQRLFTGILVGLVYKIVVD-----LLGPIGLLVGIGPLLANLIPIGLCMIWGSWMLRR 352


>gi|302188385|ref|ZP_07265058.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae 642]
          Length = 353

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 110/322 (34%), Gaps = 12/322 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMIAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 179 RDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            + +      +A+  +   D     L D      +  S ++     + + +       ST
Sbjct: 177 DEQRHMLTSSFAKEANFKTD--YWELKDVATTHFNDGSTEVVNTPVERWDVALSPQLLST 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAADK 295
           +++     ++S L +   +    +      Y   F  ++ Q      ++   IS +    
Sbjct: 235 VIMPPESLSISGLWS-YAHYLADQGLSNGRYWLAFWTKVLQPAVTVALVLMAISFIFGPL 293

Query: 296 RALVRQRKKIHPIFISLSISFG 317
           R++   ++    + +  +    
Sbjct: 294 RSVTLGQRVFTGVVVGFTFRII 315


>gi|269121332|ref|YP_003309509.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
 gi|268615210|gb|ACZ09578.1| permease YjgP/YjgQ family protein [Sebaldella termitidis ATCC
           33386]
          Length = 360

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 132/359 (36%), Gaps = 15/359 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL    + F++  L  + I  + + +     +     +L   +    Y +P +
Sbjct: 1   MNKLDRYILINYIKGFILGMLMFLLIFLLAESINVTGWIMEDKFTLKDSMVYIKYGLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + +   ++ M +  E+  +   G S    +   +  + L+S+F       
Sbjct: 61  LVNTAPLGILLGSLLSISKMAQRLEITAVKTAGISFRRFVLFPILFSALVSVFTVYISIN 120

Query: 121 IEPKCRSTIKQLSAK--AQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVD 177
           I P+     +++  +   +   T    +++++ +LD +  +  S  N N N ++GI IVD
Sbjct: 121 ILPEANKMKREMKDRKLKEDDQTKKNEKKDVYIKLDKNRMLYASYVNKNKNLMEGIMIVD 180

Query: 178 SRD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +       IY + S + +   +    + G +          + +    + L+      
Sbjct: 181 FHENLNGIKSIYVSPSATYNSQSKIW--DFGSLKELDVEKNMENEILSSEFQLRATPNEI 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
               +KA +  L  L   +           + + SE + RL+      I   I +     
Sbjct: 239 LEDQVKAKELTLKELREKSVYYSRVGANTNDLF-SELYNRLSFTFASFIMSFIGLSLG-- 295

Query: 296 RALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               +  +    I I LS+  G  ++G S ++  +       P LY+  +  + +F  +
Sbjct: 296 ---SKYVRGGAAINIGLSVLIGYSYYGISTMLRSMGPVVSVFP-LYITAWLTNIVFFAL 350


>gi|222054622|ref|YP_002536984.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
 gi|221563911|gb|ACM19883.1| permease YjgP/YjgQ family protein [Geobacter sp. FRC-32]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 124/357 (34%), Gaps = 13/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  ++     R   +     + I  V+  L++I   + +  +   L  ++   IP V
Sbjct: 1   MKIFNRFVAAAYARILCLCLGTFIAIFLVVDFLEKIGRFAGANPAYIALFFLT--RIPEV 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     M T   L   + ++EL  +   G S   +  P+L +A  +SI        
Sbjct: 59  ICQTSAMAVLMATLLTLGMFSMSSELTAMRGCGLSLGRIAMPILVIAFSVSILNLAINEY 118

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
           + P+C            +      +  +   +  DD+  +K + ++P +  L+GI +   
Sbjct: 119 VLPRCIVQGQYIREVLIEKKSPNLFFRQMNIWHRDDNFILKANLFDPASGQLKGITVW-R 177

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSST 237
                       + +  LD    +L D      S  +    S +      L   + +   
Sbjct: 178 MGAGMQPEQRLDAATAKLDAGGWLLTDVVAREFSESNIIKTSEVASMPVPLNLRATDLKV 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   +++  +  L                 Y ++ H R++    P++   + +  A + +
Sbjct: 238 MRKFSDNMGIRELAAYCEK-LRKGGYDPTRYLAQMHGRISLAFAPLVMAFLGVPFAVRGS 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                 +   I + +S S G+ +GF  +   +        +  +     ++   LMI
Sbjct: 297 ------RSSGIALGISASLGIGFGFFVLNSIVLSFGQAGVLSPVISAWSTNGIFLMI 347


>gi|308189157|ref|YP_003933288.1| hypothetical protein Pvag_3723 [Pantoea vagans C9-1]
 gi|308059667|gb|ADO11839.1| Uncharacterized protein [Pantoea vagans C9-1]
          Length = 204

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 68/183 (37%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S L     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGEVPTNLVLTLLGLGVPQMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ ++   G S+  L+K  + L +  S+   ++   + 
Sbjct: 62  LILPLSLFLAILMTLGRLYTESEITVMHACGLSKAVLVKAAMVLMLFTSVVAAVNVIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +++  A+     + +    F    D   +   +    N    +F+   R   
Sbjct: 122 PWSSRYQDEVTQNAKANPGAAAMAAGQFQTSSDGSAVLFVEDVKGNNFGNVFLAQLRPKG 181

Query: 183 THK 185
             +
Sbjct: 182 NAR 184


>gi|288940379|ref|YP_003442619.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
 gi|288895751|gb|ADC61587.1| permease YjgP/YjgQ family protein [Allochromatium vinosum DSM 180]
          Length = 354

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 119/357 (33%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+   +    L++   ++ +  V  +   ++ + +    L   +  +   +P  
Sbjct: 1   MRILDRYLAWAVMSGTLLTLAGLLPLMGVFILSDELDAIGTERYGLAEAMLFTLLSLPRY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++   +EL+ +   G S   L++  L   ++L+    +   +
Sbjct: 61  LYQLFPIATLIGALIGLGTLASRSELVAMRAAGISVGRLVRAALLGGLVLATIAVVLGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P       +L  +  L+   + L    F+ +DD  Y+ I +     +L+ I I    D
Sbjct: 121 VAPIAEQRAVELR-RLALSGEAAQLTPYGFWAIDDGAYVNIREIRSGTSLRDIDIY-RVD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  + +     +    +L    + R       +  ++   +    +      +V 
Sbjct: 179 AAAGTLEASHAEGARYEDGRWVLEGIALSRVDGEGVQVERVEHAEWDSMLDPGLLKVVVA 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                 +  L        +   +    Y   F  ++   +  +   LI+I         R
Sbjct: 239 DPRALPVWGLYK-YIRFMSVNKQDASAYEIAFWSKVLHPVLTLSMILIAIPMLLG--SSR 295

Query: 301 QRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                  +   + +    +     F+Y+      N +   I    LF  +++ LL  
Sbjct: 296 STGMGRRMLAGILVGLVYYLVSRTFAYLALLFGMNAFLAAIAPPVLFIGAAMLLLRR 352


>gi|261855830|ref|YP_003263113.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836299|gb|ACX96066.1| permease YjgP/YjgQ family protein [Halothiobacillus neapolitanus
           c2]
          Length = 376

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 123/367 (33%), Gaps = 12/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y++R I    L S      +  V   +  +  V +++ S    L       P  
Sbjct: 1   MGTLDRYLIRAIVVGGLASTAAFALLIVVFGAIDELPKV-NASYSAIDALSFVLMTTPGY 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L ++  ++EL ++  +G S   L +PVL  A +L++   +    
Sbjct: 60  LYDFYPAAVLVGGLLSLGNLAAHSELTVMRCSGMSMFRLARPVLVGATILALIGMLMGET 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I    +    ++ A+AQ +     L+  L+ R D   +I + +      L  + +     
Sbjct: 120 IGAWGQEKANEMRAEAQGSGVSMNLKSGLWLR-DGQRFINVGQAIVGGRLNRVRVFTVNA 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND---GEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
                   + S +I        L D     +  K P +   +  +  + +         +
Sbjct: 179 QSQPVQLLSASYAISEGGDLWRLYDVKESTLDTKVPGNSVKVRFVPVQEHVRLFSQKILN 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             VL     N+  L   +  +   + +L    Y S    R+   +  ++   +++     
Sbjct: 239 IAVLNPRHMNILQL--HSYVDYLRKNQLDASAYSSALWARVFAPVSVLVMLFVALPFVFA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPIL--YLFLFCISSIFLL 352
                   +   I I L + +            +    + +IP +   +     + + + 
Sbjct: 297 PQRSGGAGRWLFIAIVLGVVYLTLVQIVSAFAPVYGVGHPFIPFMSAAVPPALFAMLGVY 356

Query: 353 MIKKKYT 359
             ++ Y 
Sbjct: 357 AFRRLYP 363


>gi|288799848|ref|ZP_06405307.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333096|gb|EFC71575.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 377

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 134/362 (37%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S L I+ +A V  + + +   +     L  I+       +P 
Sbjct: 17  IKILDWYIIKKFIGTYIFSILLIISVAIVFDVNENLARFAQYHAPLKAIVFDYYANFVPY 76

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ I   G S   L++P +    L+S+  +   +
Sbjct: 77  FANLFSPLFVFIAVIFFTSKLAGNSEIISILAAGVSFKRLMRPYMISCALISMLSYYLSS 136

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P   + I+Q         T +   +N+  ++D  +   I  Y+ N+     F +D  
Sbjct: 137 NVIPHG-TVIRQNFEALYKNKTKNTSADNVLLQVDKGVIAYIQHYDNNSKRGYGFSLDKF 195

Query: 180 DTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + +    +   +     +I   +    +++ +  +   + + I+    +   +  E  + 
Sbjct: 196 NNKKLVSHLTATEIQYDTISDTKYHWTISNWKTRKLEGLKEKITTGAQRDTIIMMEPTDL 255

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +      + L +      +     +  Y+ E+HKR+       I   I +  + +
Sbjct: 256 VYSKGQQETFTSAQLQDYISKQIDRGSSNVVQYQVEYHKRIASSFASFILTTIGLSLSSR 315

Query: 296 RALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           +   R+      + I L++SFG +          I  N   I   ++     S +     
Sbjct: 316 K---RKGGMGLYMGIGLALSFGYIMLQTVSATFAINANTPPIIAAWIPNIIFSLVAYFCY 372

Query: 355 KK 356
           +K
Sbjct: 373 RK 374


>gi|146308540|ref|YP_001189005.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
 gi|145576741|gb|ABP86273.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina ymp]
          Length = 354

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 122/360 (33%), Gaps = 11/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  ++ ++     L   L       P  
Sbjct: 1   MAKLDRYIGAQVFFAILTVLGIILGLALLFAFIDELSDLNKGDYGLGQALWYVLLTAPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 61  AYEMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  ++       Y+ I+   P   L G+      D
Sbjct: 121 VAPLTENQAQADRALAQGGGAAQSSKRGMW-HRQGQEYVHINAVQPGGLLLGVTRYRFDD 179

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      +A+      D    +L + +         ++   + + + ++      ST+V
Sbjct: 180 ERRLQSASFARRAEHRGDH--WVLRNVQTTFLHDNRSEVVNQREERWDIELSPQLLSTVV 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF--PVIFGLISIVAADKRA 297
           ++    +++ L     +    +      Y   F  ++ Q L    ++   IS +    R+
Sbjct: 238 MEPESLSITGL-WQYIHYLAEQGLNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPLRS 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   ++    +F  + + F        +        +   +  L    I ++  + + ++
Sbjct: 297 VTLGQR----VFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352


>gi|315185937|gb|EFU19701.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6578]
          Length = 424

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 138/420 (32%), Gaps = 74/420 (17%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I  SF++S LF   I  + Q L     + S    L  ++ +  Y +P+++ 
Sbjct: 8   TLYRYVGEEIALSFVISFLFFFVIFLINQFLLLAEQILSKRAPLFDVILLIIYALPSIVA 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  PF         +T ++ + E L     G S +    P++   +LLS   F++ +   
Sbjct: 68  ISVPFASLAAALMSITRLSSDNEFLAFQAGGISLLHAFLPMVVFGLLLSSVSFVANDYFL 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L  +         LE        +   I I      + +  + I++  +  
Sbjct: 128 PLGTLNFAKLYRQILYTTPEIELESYAIKEYQN--TILIPGKVNQSHIDDLLIIEETEEG 185

Query: 183 THKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
           T  I  A+ G I   R      A+ L+D  +         + S  +  +YT+  +  N +
Sbjct: 186 TR-ILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIA 244

Query: 237 TIVLKANDQ----------------------------------NLSFLLNPNPNNPNYRP 262
                  +                                   +  +L   + +N + R 
Sbjct: 245 LRNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSSLYLTTLSLSNESIRS 304

Query: 263 ELLETYRS-----------------------EFHKRLTQWLFPVIFGLISIVAADKRALV 299
             L   RS                       EFHK+ +     + F L++I         
Sbjct: 305 RFLGNLRSSLQRLREKERIRIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGL---FN 361

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
            +  +     I + +S  V+WG       +     + P L ++    +  + ++ L +I+
Sbjct: 362 LKGGRAAGFGIGIFLSI-VYWGMLVAGQMLGLRTSFSPSLAMWVPNIIISLVALTLFLIR 420


>gi|254457924|ref|ZP_05071351.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
 gi|207085317|gb|EDZ62602.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
          Length = 339

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 126/329 (38%), Gaps = 19/329 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+  +   FL   + +  IA VI +++     +    +L  ++K+  +++P +
Sbjct: 1   MDRLRKYIINNLYMIFLSMFMPLFAIASVIFMIKLATYTAVIQLTLWDMVKLYLFVLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E++++   G     +IK +   A LLS  L  +  +
Sbjct: 61  LFYTLPLTFFIAATLSLFRLSTDNEMVVLFALGIHPKFIIKTLFKPAALLSALLMFNFLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +T+       + +     L  + F     D  + I K N N T   + +  +++
Sbjct: 121 LFPHA-TTLSSNFVSYKKSEAKFNLSASEFGHSFGDWLLYIGKDNENETYSDVILF-NKN 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A+   I  D   + L   E    S   ++ S + F +  +         +  
Sbjct: 179 KKEEIIISAKRAEIINDAGILRLKLIEGEGYSYSKEEFSQIDFDTMYINDTMRTDLAVYR 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  LS                 +   S+ H  +T  L  + F LIS+       +V 
Sbjct: 239 TPLEYWLSN----------------DRKESKTHMMITDTLLSL-FPLISLFLVVSIGVVH 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            R +   I++ L +   +++G +  + K 
Sbjct: 282 VRHQKGRIYLYLFLGVLLYYGATLGLQKS 310


>gi|332530549|ref|ZP_08406487.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
 gi|332039995|gb|EGI76383.1| permease YjgP/YjgQ [Hylemonella gracilis ATCC 19624]
          Length = 372

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/370 (15%), Positives = 124/370 (33%), Gaps = 19/370 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPT 59
           +    + R I  +     L  + +      + +++ V         L   L     L P 
Sbjct: 6   TLRRLLFREILFTASFVTLAFLALFVFFDFIDQLSAVGRPDRPGFELPQALIYVVLLAPG 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+T + +++E  I+  +G      +  +L    + +   F+  +
Sbjct: 66  HLYELLPITVLIGTIYVMTRLAQSSEFTILRTSGLGPWRALAMLLTAGGVFASATFVIGD 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF---FRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P      +   A+ +     S ++   +           I I    P+ TLQ + I 
Sbjct: 126 YLSPWSNQVAQAYRAQFRKE-GASTIKGGAWLREREPYAKYGINIGALLPDGTLQRVRIY 184

Query: 177 DSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQT 230
           +  +         A +  I+ D Q+  L   E    +    D+  ++        +    
Sbjct: 185 EIDNAGNLVSTLQASTARINND-QSWTLMGVERTEFNAAGPDVRRIETTQLPSYRWPTGI 243

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +   S  VL  +  N   L      +     +  E Y  +F K++   L  ++  ++++
Sbjct: 244 SAEMISAAVLDPDRMNTVDLFL-YIGHLEDNAQNAERYEIQFWKKVFYPLSCLVMVMMAL 302

Query: 291 VAA-DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI---PILYLFLFCI 346
             A            +    ++    F +   F YI       P+     P L   LF +
Sbjct: 303 PFAYLHFRNQGISLYVFGGVMAGVTFFFLNSMFGYIGELRHWTPWIAAATPGLIFMLFSL 362

Query: 347 SSIFLLMIKK 356
           ++   L++K+
Sbjct: 363 AAFAWLVLKR 372


>gi|229496640|ref|ZP_04390354.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
 gi|229316537|gb|EEN82456.1| permease, YjgP/YjgQ family [Porphyromonas endodontalis ATCC 35406]
          Length = 358

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 128/362 (35%), Gaps = 11/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTVL 61
             + YI+R    ++  S L I+ +A V  I +RI+   +   SL  I+       +P   
Sbjct: 4   RLDRYIIRLFLGTYFSSILLILSVAIVFDINERISKFLNPECSLYEIVFHYYLNFVPYYA 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M +P    +      + +   TE++ I  +G S   L++P LF A ++++  F+  + +
Sbjct: 64  NMFSPLFVFLSVIFFTSKLAEKTEIIAILASGVSFKRLLRPYLFSAAIVALLTFLLSSFV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P           K       +Y  E++  ++   L+  I  Y+ +N     F++D  + 
Sbjct: 124 IPPGSRVRNDFQNKYFRDKRQTY-AESVQIQVSPSLFAYIHSYSADNKTGYNFMLDKFEH 182

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            T      AQ+   D       L D  + R       +        T+  +  +     +
Sbjct: 183 NTIKSRLTAQTAEYD-TLNTWRLYDYSITRYGAKRDTLERGTQLDTTINLKPQDFLISAV 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            A       L        +     ++    E  KR        I  +I +         R
Sbjct: 242 DAETYTTPVLHQYIGELKSRGATNVDLLEVELQKRYAAIPAAFILTIIGVSL-----SSR 296

Query: 301 QRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYL-FLFCISSIFLLMIKKKY 358
           +RK    + +++ I+    +  F  +      +    PI+       I +I  + + KK 
Sbjct: 297 KRKGGTGLSLAIGIALSFTYILFLTLASSFSASGALSPIVAAQMPNAIYAIIAIFLYKKA 356

Query: 359 TK 360
            +
Sbjct: 357 PR 358


>gi|307718798|ref|YP_003874330.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
           6192]
 gi|306532523|gb|ADN02057.1| hypothetical protein STHERM_c11120 [Spirochaeta thermophila DSM
           6192]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 141/421 (33%), Gaps = 74/421 (17%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y+   I  SF++S LF   I  + Q L     + S    L  ++ +  Y +P+++ 
Sbjct: 8   TLYRYVGEEIALSFVISFLFFFVIFLINQFLLMAEQILSKRAPLFDVILLIIYALPSIVA 67

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  PF         +T ++ + E L     G S +    P++  ++LLS   F++ +   
Sbjct: 68  ISVPFASLAAALMSITRLSSDNEFLAFQAGGISLVHAFLPMVVFSLLLSSVSFVANDYFL 127

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P       +L  +         LE        +   I I      + +  + I++  +  
Sbjct: 128 PLGTLNFAKLYRQILYTTPEIELESYAIKEYQN--TILIPGKVNQSHIDDLLIIEETEEG 185

Query: 183 THKIYYAQSGSIDLDRQ-----AIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
           T  I  A+ G I   R      A+ L+D  +         + S  +  +YT+  +  N +
Sbjct: 186 TR-ILQAREGDIVPGRNEKTALALELHDVFLSLVKREGDYEYSSAETLTYTILVKDINIA 244

Query: 237 TIVLKANDQ----------------------------------NLSFLLNPNPNNPNYRP 262
                  +                                   +  +L   + +N + R 
Sbjct: 245 LRNPGPREMSSVDVYRVMKEREQVLEQKRRSHEKERDDLRRSVSRLYLTTLSLSNESIRS 304

Query: 263 ELLETYRS-----------------------EFHKRLTQWLFPVIFGLISIVAADKRALV 299
             L + RS                       EFHK+ +     + F L++I         
Sbjct: 305 RFLGSLRSSLQRLRQKERITIEDRTLQIYTLEFHKKFSIPFSCIPFVLLAIAIGL---FN 361

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
            +  +     I + +S  ++WG       +     + P L ++    L  + ++ L +++
Sbjct: 362 LKGGRAAGFGIGIFLSI-LYWGMLVAGQMLGLRTSFSPSLAMWLPNILITLVALTLFLVR 420

Query: 356 K 356
           K
Sbjct: 421 K 421


>gi|212212731|ref|YP_002303667.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011141|gb|ACJ18522.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 372

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 7   RYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 67  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 127 QWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 186

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 187 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 246 ITGRVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 298 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 324


>gi|165919041|ref|ZP_02219127.1| putative permease [Coxiella burnetii RSA 334]
 gi|165917236|gb|EDR35840.1| putative permease [Coxiella burnetii RSA 334]
          Length = 370

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 5   RYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 65  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 125 QWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 184

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 185 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 244 ITGRVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 296 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 322


>gi|330836571|ref|YP_004411212.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
 gi|329748474|gb|AEC01830.1| permease YjgP/YjgQ family protein [Spirochaeta coccoides DSM 17374]
          Length = 363

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 115/362 (31%), Gaps = 5/362 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+R     FL +      +   + +   ++  + +      +L+++   IP  
Sbjct: 1   MKILDRYIMRSFLTVFLSALGICTLLLVAVDLFTNLDSYAKNEVPFFAILRLTVLYIPDA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +V         T  L  ++ + EL+ I   G   I +I P++ + I +S+    +   
Sbjct: 61  VSLVISPAVIFSATLTLALIHSSNELIPIFCAGIPYIRVIIPMMAVGICVSMTTLAATEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I    R    ++  +   + T        F        +   +Y+     +  + +++  
Sbjct: 121 IVIPSRVNRVEVQTEYTGSQTSKDNRNITFVDASGRFVLHAKRYDATRQRIMNMVLIERD 180

Query: 180 DTQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTESANS 235
                      A     D   +  IL+D  +   +     +S       S  L  E    
Sbjct: 181 GPGGRMTGRTSAGMAQWDETERRWILSDVSIQNFTEGDTVLSFHEDTLMSDILDIEPGLF 240

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S +     + +    L    N     P    T  +++++R   +L P I  +I+     +
Sbjct: 241 SYLGTDIKNMDRKTALWYLDNMKGLDPYQWATAATDYYERAYSFLTPFILMIIACSMNYQ 300

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                    I        + +        +  +   +P     L L L    S    +  
Sbjct: 301 YKKNVLLFSILTSIGIAIVFYVTQLVTLLLAKQYVISPLTGVFLPLGLMIALSSAFFLRV 360

Query: 356 KK 357
            +
Sbjct: 361 NR 362


>gi|90408709|ref|ZP_01216858.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
 gi|90310191|gb|EAS38327.1| hypothetical protein PCNPT3_03815 [Psychromonas sp. CNPT3]
          Length = 354

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 121/360 (33%), Gaps = 23/360 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  +  ++   ++ ++ +I+ ++++  V   +  +          +P  
Sbjct: 1   MGILDRYIGKTVFAATFLTLFVLLGLSSIIKFVEQMRSVGQGSYDVLAAGYFVLLKMPVE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L S+  ++EL+++   G S+  +   VL  A+ +   + +    
Sbjct: 61  MTVFFPMAALIGALIGLGSLASSSELVVMQAAGMSKFRIAGAVLKTAVPMVFAVMLLAEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P        +   A+   +    +  ++ +  D  +I I + N  + L  + F   + 
Sbjct: 121 VAPVTDKEAYSMRDLARSGQSSVSNKYGVWVKDAD-AFISIGRMNSQSELFNVRFYFFNE 179

Query: 180 DTQTHKIYYAQS-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             Q      A+      G   L+       + +         D+         L    ++
Sbjct: 180 SMQLDHAVLAKKVSYRGGYWLLEDSTWTKFESDRTNVEHKDSDVWQTDLTPKKLDVILSD 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            S + ++     +++L N          +    Y     ++       V+  L+S+    
Sbjct: 240 PSKMSMRDIYGYITYLEN--------NQQDANRYLLILWRKAVLPFTVVVMMLLSVSFIF 291

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                     +  + +   +  G+  GF++ +      P  +      L       +L++
Sbjct: 292 GG--------LRTVTMGTRLILGIASGFAFHVSGELFGPASLVFGLSPLLGALLPSMLVL 343


>gi|270295684|ref|ZP_06201885.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274931|gb|EFA20792.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 617

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 29/285 (10%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
             F+ +    +FI  +  + + ++ +      + +L +   Y   +++P   P    +  
Sbjct: 1   MLFMGTFFICLFIFMMQFLWRYVDEMVGKGLEMTVLAQFFFYSALSLVPASLPLAILLAA 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                +     ELL +   G S + +++P++     +    F  +N+I PK ++ +  L 
Sbjct: 61  LITFGNFGERFELLAMKAAGISLLKIMRPLIIFICFICCVSFYFQNVIGPKAQTKLWTLL 120

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQS 191
              +       + E +F+   D   + +   N     L  + I +     +  +I  + S
Sbjct: 121 ISMKQKSPEVDIPEGVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKSDS 180

Query: 192 GSIDLDRQ----AIILNDGEV---------------HRKSPISKDISIMKFKSYTLQTES 232
           G +++        + L  GE                +R+    +  +I++F S       
Sbjct: 181 GRLEMTADKQHLYLHLYSGEQFENLKSQNMNQRNVPYRRETFREKHAIIEFNS-DFNMVD 239

Query: 233 ANSSTIVLKANDQNLSF-------LLNPNPNNPNYRPELLETYRS 270
           A   +    + D  +         L N +     Y+  +  TY+ 
Sbjct: 240 AGIMSNQSNSKDMRMLQADIDSMKLQNDSVGRGYYKEAMAGTYKV 284


>gi|326796830|ref|YP_004314650.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
 gi|326547594|gb|ADZ92814.1| permease YjgP/YjgQ family protein [Marinomonas mediterranea MMB-1]
          Length = 353

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 119/363 (32%), Gaps = 17/363 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M  F+ YI   +  SF      ++ + +    L  I+ V   + + + N LL++  Y  P
Sbjct: 1   MSRFDRYIGSSVLWSFAAVIFVLLGLDF---ALTFIDQVKKVNDSYTTNALLQVLAYRAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
                  P    + T   L ++   +EL +I  TG     +        +L+S+      
Sbjct: 58  IKFAEYIPVASLIGTLIGLGALASTSELTVIRATGVPIWRIGFAACKPILLISLIGVGIS 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P        +      +     L   ++ +  D  ++ I+  +    L  I I   
Sbjct: 118 EYVSPYATQQADLIERLRGQSEGRFALTGGVWIK-SDGNFVYINAADREGVLYDIQIFTP 176

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 KI  A+      D Q   L             +    +   +T   + ++    
Sbjct: 177 NGQALEKIQKAKFARHLSDNQ-WRLEQVTETHFLGDRIETGYKETVPWTASLKPSHLFLA 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI--VAADKR 296
             +    +LS L +   +    +      Y+ EF  +           ++++  V    R
Sbjct: 236 SQEPEALSLSEL-HQYQSYLTGQELNAGLYQLEFWTKSLMPFACFALVIVALSSVFGPLR 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMI 354
           +     +    + I +     +F     +  K+     + P++   + +    +I LL++
Sbjct: 295 SSTMGGRIFSGVLIGI-----MFQNGLNLFGKMSLALSFSPLIGVAIPIALCFAIGLLLM 349

Query: 355 KKK 357
            +K
Sbjct: 350 SRK 352


>gi|149378263|ref|ZP_01895975.1| predicted Permease [Marinobacter algicola DG893]
 gi|149357460|gb|EDM45970.1| predicted Permease [Marinobacter algicola DG893]
          Length = 353

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 125/358 (34%), Gaps = 8/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y++  +G +  +  L ++ +  +   +  ++   +  ++L  LL      +P  
Sbjct: 1   MRKIDRYVMSTVGGAMFLVMLVVLSLDLIFAFIAELDDAENDYQTLQALL-YVVMTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L +M  ++EL +I   G S   ++   +   +++ +   +    
Sbjct: 60  IYDYLPLGAFMGCLVGLGTMASSSELTVIRAAGVSLKRIVWSAMKPTLVVVVLGVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +     AQ A         ++   + D+++ ++   PN  L G+ +    D
Sbjct: 120 VAPPAERMAQSQKTVAQGAGESIASASGIW-HREGDVFMHLNAVQPNGVLHGVSLFRFDD 178

Query: 181 TQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      +A+ G    D    +L +    R S         +   +      +  S ++
Sbjct: 179 ERWLVSASFAERGIYQGDH--WLLENVATTRLSDEKTTQETHRALRWETGLSPSVLSVLI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  D  +S L     +    +      Y   F K++   L   +  L++I        +
Sbjct: 237 VKPEDLAISGLYT-YASYLGEQGLNAANYWLAFWKKVLMPLGTAVMVLVAISFVFGP--L 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           R       +F  L +     +    +        +   +  +    I+++   ++ K+
Sbjct: 294 RSVTMGFRVFTGLIVGLLFKYMQDLLGPMSLVFGFNPVLAIILPIAINAVVGAVLMKR 351


>gi|212212730|ref|YP_002303666.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011140|gb|ACJ18521.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 355

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FIVD 177
           I P+  ++ ++    A           +++       +I I   +  N +  +   FI  
Sbjct: 121 IAPQLEASGEETKLTALSKAVGYKALGDVWLHGAQ-SFIHIGSVDAKNKISEVSQFFI-- 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
           +   Q     YA  G         IL + +  + +P  + +  I KF   T+     +  
Sbjct: 178 NNKHQLLSAVYAPKGEYVKGH--WILYNVKQTQFTPNRTTEKKIAKFP-LTIVFNPDHLQ 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 + Q++  L +               Y   F +R  Q L  V+   + +      
Sbjct: 235 QGRKMVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG- 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +RQ      I   + I F  +     F       +  P +  ++   LF +  + LL 
Sbjct: 293 -SLRQASMGWRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLR 351

Query: 354 IKKK 357
             ++
Sbjct: 352 YSRR 355


>gi|317503389|ref|ZP_07961433.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665484|gb|EFV05107.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 385

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 128/368 (34%), Gaps = 30/368 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S   I+ I+ VI I + +   S     L  I+       IP 
Sbjct: 25  IKRLDWYIIKKFIGTYIYSIALIISISIVIDINENLAKFSEYHAPLKAIVFDYYMNFIPY 84

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   IL+S+  F    
Sbjct: 85  FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCILISVVSFYLSG 144

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + P     I+Q           +   +N+   +       I  Y+ N     G  +   
Sbjct: 145 YVIPHSNV-IRQNFESLYKNKKKTTAADNVMLNVGKGTIAYIQHYDNNTKRGYGFSLDKF 203

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D +      A     D    +         +    +++  I KF  Y  Q E+      
Sbjct: 204 QDKKLVSHMTAMEIQYDTISDS---------KYHWTAQNYKIRKFNGYREQIENGAKRDT 254

Query: 239 VLKANDQNLSF-------LLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFG 286
            +     +L +         NP  ++   +           Y+ E+HKR+       I  
Sbjct: 255 TILMEPNDLVYSKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILT 314

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLF 344
           +I +  + K+   R+      + I L++SFG +     +      N    PI+  ++   
Sbjct: 315 IIGLSLSAKK---RKGGMGMYLGIGLALSFG-YIMLQTVSSTFAINANLPPIIAAWIPNI 370

Query: 345 CISSIFLL 352
             + +   
Sbjct: 371 IFAIVAYF 378


>gi|212218293|ref|YP_002305080.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
 gi|212012555|gb|ACJ19935.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
          Length = 372

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 7   RYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 67  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 127 QWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 186

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 187 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 246 ITGRVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 298 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 324


>gi|88810479|ref|ZP_01125736.1| putative permease [Nitrococcus mobilis Nb-231]
 gi|88792109|gb|EAR23219.1| putative permease [Nitrococcus mobilis Nb-231]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 4/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R +    L+  L IV +  +   L+          ++ + L       P  
Sbjct: 1   MKLIDRYIARNVTAGTLIVLLVIVSLDLLFNFLKESQDSGQGDYTVWLALLYVLLTTPYS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   + +   L  +   +EL+++  TG S +T+ +P++   + L++        
Sbjct: 61  AYQAFPFATLIGSLIGLGGLAARSELVVMRGTGMSALTIARPLVMAGLSLALLAMGVGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +L  +A      +  E   F+  D D Y+   +    + L+ + I   + 
Sbjct: 121 LAPRTDRLATELQTRAVGGQLSAGGESG-FWARDGDRYVHARQVPEADVLEDLQIYAFQG 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   I  A     +     + L     H  +  S  +S      Y  + +      +V+
Sbjct: 180 VRLDHITTAWRAHYEQGVWML-LAPVTTHFAADGSVRVSRAASARYRSELKPDMLDVVVV 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +     ++ L                 YR  F  ++   L  V   L+++          
Sbjct: 239 EPEVLPITQL-WIYTRYLERNGLDSSRYRLAFWVKVATPLATVTMLLLTVPLVFGSLRSA 297

Query: 301 QRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
              +   I + + I+F +     +         P    +    LF   ++  L+   + +
Sbjct: 298 NMGQRIFIGVLIGIAFFLLNRLLNRAAMVFGLPPLVSALGPTVLFLGIALGSLVRLSRRS 357


>gi|119513620|ref|ZP_01632629.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
 gi|119461725|gb|EAW42753.1| permease YjgP/YjgQ [Nodularia spumigena CCY9414]
          Length = 385

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 122/379 (32%), Gaps = 23/379 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIA-WVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   E Y++  +    L S   +  +A  +    ++   +     +  IL+ +    +P 
Sbjct: 10  LSLLERYLISELIPPLLFSIAIVTIVAESIGISFEQFKFLIERQLTFEILIYLHLLKLPE 69

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            +    P    + T      ++  +E++ I + G S   L+ P + +A LL   LFI   
Sbjct: 70  FIVFAAPIAVLLATIFTYKKLSNTSEIIAIHSCGVSLDKLVYPAVMVAALLIPVLFIFNE 129

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-------------LYIKISKYNP 166
           +I             KA       + + ++F++  D+              ++  ++   
Sbjct: 130 VIVIPANYKAAITLEKAMNINRLYFQKNDIFYQQIDNENTLDSLAQQNYLKHLLYAERFA 189

Query: 167 NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +  +Q + ++     +   I  ++       ++     +G  +  +        +KF + 
Sbjct: 190 DGQMQQVTLLMRDSEKLKVIIKSRFAECYGQQKFCYFYEGVKNIINADGSYGERIKFDTM 249

Query: 227 TLQTES----ANSSTIVLKANDQNLSFLLNPNPN-NPNYRPELLETYRSEFHKRLTQWLF 281
            L   +           L   + N+  +                 + +    +R T  + 
Sbjct: 250 PLYLPNIALQLQIDQETLDNREMNIFQVYQRLLVFQKAGDRRNFRSLQVNIQERFTLPVS 309

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             +F L+          ++ R + +   ++L I              I         ++L
Sbjct: 310 CAVFALLGSAI---GINLQPRTRYNSFSLTLGIILLYDAIQVIAKIFIISEIISFSWIWL 366

Query: 342 FLFCISSI-FLLMIKKKYT 359
                +++   L+IKK   
Sbjct: 367 PNIVGTTVGVYLLIKKNSP 385


>gi|332292438|ref|YP_004431047.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170524|gb|AEE19779.1| permease YjgP/YjgQ family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 127/362 (35%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F+   +  + I  ++ + ++I+ + ++      +           
Sbjct: 1   MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILANEAPFGEVALYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +  F     
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFYRFLRPYLIGATIVCVGAFFLGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +   +           +N++ ++D   YI +S + P       F  +  +
Sbjct: 121 LAPRANKGYNEFIFEYLKKNKKDRETQNVYRQIDTGDYIYVSSFTPRTKTGRNFTWEHFE 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                    A     + +     LN  +    +     +            +  + + + 
Sbjct: 181 GNKMTYKMSAIRIRYNEEDTTYTLNSFKKRTITENGDILESKAKLDTVFNFDMDDLTPVE 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A   +   L        +     +  Y     KR +  +   I  +I++      A+ 
Sbjct: 241 YIAETLSTPELRKFIAKEKSRGSSYISRYEVTLQKRYSLPVAAYILTIIAVAV---SAMK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIK 355
           R+      +   + ++F VF  F  +   + +   + P++ ++    LF I +++LL   
Sbjct: 298 RRGGMGINLAFGIVLAF-VFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAVYLLRNA 356

Query: 356 KK 357
           K+
Sbjct: 357 KR 358


>gi|153209375|ref|ZP_01947370.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|120575375|gb|EAX31999.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
          Length = 370

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 5   RYLCKEILGTLLATTLILLIIFMTNQFIHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 65  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 125 QWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 184

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 185 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 244 ITGRVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 296 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 322


>gi|156935579|ref|YP_001439495.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533833|gb|ABU78659.1| hypothetical protein ESA_03443 [Cronobacter sakazakii ATCC BAA-894]
          Length = 360

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 132/358 (36%), Gaps = 5/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++      + +       +   +P  +
Sbjct: 5   SVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDI 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L IF       +
Sbjct: 65  QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + L A+     +    ++ ++ +  ++ ++ I +    N L GI I    D 
Sbjct: 125 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGNN-FVYIERVKGENELGGISIYAFNDK 183

Query: 182 QT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    + YA +   D + +   L+   E + K+P     S     ++           + 
Sbjct: 184 RRLESVRYAANAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVA 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  ++S L N          +    Y+     ++ Q L   +  L+++         
Sbjct: 244 LDPDALSISGLRN-YVKYLKASGQDASRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRS 302

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKK 356
                     IS    F V       +  +   P  I  +L    F + S++LLM + 
Sbjct: 303 VPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKRA 360


>gi|299140954|ref|ZP_07034092.1| membrane protein [Prevotella oris C735]
 gi|298577920|gb|EFI49788.1| membrane protein [Prevotella oris C735]
          Length = 424

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 130/368 (35%), Gaps = 30/368 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S   I+ I+ V+ I + +   S     L  I+       IP 
Sbjct: 64  IKRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPY 123

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   IL+S   F    
Sbjct: 124 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSG 183

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + P     I+Q           +   +N+  ++   +   I +Y+ N     G  +   
Sbjct: 184 YVIPHSNV-IRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKF 242

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D +      A     D    +         +    + +  I KF  Y  Q E+      
Sbjct: 243 QDKKLVSHMTATEIQYDTISDS---------KYHWTALNYKIRKFNGYREQIENGEKKDT 293

Query: 239 VLKANDQNLSF-------LLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFG 286
            +     +L +         NP  ++   +           Y+ E+HKR+       I  
Sbjct: 294 TIMMEPTDLVYSKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILT 353

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLF 344
           +I +  + K+   R+      + I L++SFG +     +      N    P++  ++  F
Sbjct: 354 IIGLSLSAKK---RKGGMGLYLGIGLALSFG-YIMLQTVSSTFAINANLPPVIAAWIPNF 409

Query: 345 CISSIFLL 352
             + +   
Sbjct: 410 IFAVVAYF 417


>gi|237653448|ref|YP_002889762.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
 gi|237624695|gb|ACR01385.1| permease YjgP/YjgQ family protein [Thauera sp. MZ1T]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 122/351 (34%), Gaps = 4/351 (1%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ R I  +  +  +  + +      +  +  V     +L   L   G  +P  +  + 
Sbjct: 7   RYLAREIFAASALVLVAFLGLFAFFDFINELEDVGKGGYTLYQALVYVGLTLPARVYELM 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    + T   L ++ +N+E+ ++  +G S   L   +  +  + ++ +F+    + P  
Sbjct: 67  PIAVLIGTLYALATLAKNSEITVMRASGMSNALLTSVLGLIGGVFAVLIFLVGEYVAPPA 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRDTQTH 184
            +  ++    A  A     L   L+ + D  L + +    P+ +++G  I     D    
Sbjct: 127 EAAAEEWKLTATQATVSQQLRSGLWVK-DGRLVLNVRTLMPDRSMRGARIYAFDEDYALE 185

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
            I  A +G  D   +   L D +  R      +I  +    +  +        +++    
Sbjct: 186 SIAEAATGVFDGSGE-WKLLDVQRTRFHGDRTEIERLPEIRWRSELTPEVLGVLMVSPEH 244

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
                L     N+     +  + +     K+L      ++   +++        +     
Sbjct: 245 MPFGRL-WTYINHLRDNNQNADRFEIALWKKLIYPFTALVMMALAMPFGFIHDRMGGASA 303

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + + L + F +  G    +  I   P ++  L   L  +++ F LM +
Sbjct: 304 RIFMGVMLGVGFHLLNGLFSNLGMINAWPPFMAALTPSLIFLAAAFWLMHR 354


>gi|209964086|ref|YP_002297001.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209957552|gb|ACI98188.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 359

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 119/360 (33%), Gaps = 26/360 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y+ R      L   + +  +  ++ +L   + V     +L  L   +   +P+++
Sbjct: 3   GTLARYLSRQFLVRSLAVLVALTALLQLLDLLDAASRVLERGGALGDLGTYALLRLPSIV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L  + +N E++ + + G +   L+  ++  A+ +++F  I  + I
Sbjct: 63  ERLVPLAVLVGSLTTLYGLVQNNEIVAMRSAGLTPYQLLATLMPAAVAIAVFHLILSDQI 122

Query: 122 EPKCRSTIKQLSAKAQ--LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            P+         A+ +          E+ L+ R+ + +            L+ + +   R
Sbjct: 123 APRAERAFLTWWAETEPPTDDDLPLAEKKLWLRVGNTIVAAERVLERGARLEQVSLY-PR 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D Q       ++ +         L DG     +                + E    +   
Sbjct: 182 DDQGRVTERTRAAAAVYGDGNWTLLDGTRLDLTRG------------DFKAEPFARAPWP 229

Query: 240 LKANDQNLSFLLNPNPNNPNYR-----------PELLETYRSEFHKRLTQWLFPVIFGLI 288
           ++ +  N+  +L P  N P  R            +    Y +  H+     L  +I  L+
Sbjct: 230 VRLHPANVVEVLQPTENIPLLRLRSILRGDWAGRQSPAYYETRLHETYAGPLATLIMVLL 289

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +   A              + I + +++ +  G    + +    P  I      +F  + 
Sbjct: 290 AAPVAHGMRRSGAVGGSMALGIGIGLTYLLADGMLAALGEAGAMPAVIAAWAPTVFFAAV 349


>gi|149178410|ref|ZP_01857000.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
 gi|148842727|gb|EDL57100.1| hypothetical protein PM8797T_01869 [Planctomyces maris DSM 8797]
          Length = 392

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 126/395 (31%), Gaps = 46/395 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L  + R F +    +  +   +   Q+    +S    + ++LKI  +++P++
Sbjct: 1   MRLLQRYVLFELLRVFTLMITVLTVLLVFVGAFQQ---ATSQGLGVILVLKILPFIVPSM 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP   P    +    V   +  + E+      G + ++L+ P   L   LS+   I  + 
Sbjct: 58  LPFTIPATLLLTVCVVYGRIAGDQEITAAKAAGINVLSLLWPSFILGGFLSLGSLILSDQ 117

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P     I+   A + +         +N        + I +        L   F   S 
Sbjct: 118 IIPWAEKNIENTIACELETIFLEKLRSQNQIHDPTSGISITVMGVRNKTLLVPTFRY-SP 176

Query: 180 DTQTHKIYYAQSGSIDLD--RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +      A+  +++ D   Q +IL+  + H   P       ++  ++     S  +  
Sbjct: 177 PNKKPVHLQAEEATLEFDLTNQQVILHISKGHIDFPGKPRF-FVEKDTFPFPLPSQTTMA 235

Query: 238 IVLKANDQNLSFLL-----------------------------------NPNPNNPNYRP 262
                + +++   L                                   N +     ++ 
Sbjct: 236 KPRHMSVKSIKSELVDLSEKKNEFEFQRDIEVAMLLALGDFEHFQSPEVNTDLPQNQFQE 295

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +     ++    R         F L+    +  +A  R++       + L I    +   
Sbjct: 296 KRQNKLKTALSSRFALSCSCFFFVLVGCPFSIAQA--RRQFLTSFFLVFLPILLFYYPIV 353

Query: 323 SYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKK 356
              I+  +Q        L+     +  + + M++K
Sbjct: 354 LLAINLAKQGKIEPTWSLWAGNAGLLIVAIHMLRK 388


>gi|300935934|ref|ZP_07150887.1| putative inner membrane protein [Escherichia coli MS 21-1]
 gi|300458870|gb|EFK22363.1| putative inner membrane protein [Escherichia coli MS 21-1]
          Length = 360

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 128/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +      +P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGISPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|317014475|gb|ADU81911.1| hypothetical protein HPGAM_05615 [Helicobacter pylori Gambia94/24]
          Length = 345

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 136/357 (38%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 4   HYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  
Sbjct: 64  PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 124 KSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-TENNSYDNLVLFSNKSLSQES 181

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN    H        +  + F+   L  + +S NS+       
Sbjct: 182 FILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQG 241

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       N N   +          +R +Q +   +F L S+       +   R 
Sbjct: 242 TDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 291

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + GV+     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 292 KTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFIVKRY 345


>gi|71901308|ref|ZP_00683405.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71728928|gb|EAO31062.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 408

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 103/281 (36%), Gaps = 17/281 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 48  MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 107

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L LA+ + + + +    
Sbjct: 108 LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLALPVVVLIGVCSLW 167

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T L  +F+   +
Sbjct: 168 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 227

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D     +  A+ G +       + + L DG+           +  ++ F          +
Sbjct: 228 D-DRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPTDGAALNYRVLTFARNDALLPELS 286

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                   +      L+           +     +++ H R
Sbjct: 287 VVYDSNHPDILPTFNLI----------GDPRREAQAQLHAR 317


>gi|281424311|ref|ZP_06255224.1| putative membrane protein [Prevotella oris F0302]
 gi|281401580|gb|EFB32411.1| putative membrane protein [Prevotella oris F0302]
          Length = 432

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 127/357 (35%), Gaps = 28/357 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S   I+ I+ V+ I + +   S     L  I+       IP 
Sbjct: 72  IKRLDWYIIKKFIGTYIYSIALIISISIVVDINENLAKFSEYHAPLKAIVFDYYMNFIPY 131

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   IL+S   F    
Sbjct: 132 FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMITCILISAVSFYLSG 191

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + P     I+Q           +   +N+  ++   +   I +Y+ N     G  +   
Sbjct: 192 YVIPHSNV-IRQDFESLYKNNKKNTAADNVMLQVGSGVIAYIQQYDNNTKRGYGFSLDKF 250

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D +      A     D    +         +    + +  I KF  Y  Q E+      
Sbjct: 251 QDKKLVSHMTATEIQYDTISDS---------KYHWTALNYKIRKFNGYREQIENGEKKDT 301

Query: 239 VLKANDQNLSF-------LLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFG 286
            +     +L +         NP  ++   +           Y+ E+HKR+       I  
Sbjct: 302 TIMMEPTDLVYSKGQQETFTNPELSDYISKQIDRGSSNVVQYQVEYHKRIAASFASFILT 361

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +I +  + K+   R+      + I L++SFG +     +      N    P++  ++
Sbjct: 362 IIGLSLSAKK---RKGGMGLYLGIGLALSFG-YIMLQTVSSTFAINANLPPVIAAWI 414


>gi|157147732|ref|YP_001455051.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
 gi|157084937|gb|ABV14615.1| hypothetical protein CKO_03536 [Citrobacter koseri ATCC BAA-895]
          Length = 360

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 127/363 (34%), Gaps = 15/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D D +   L+   E   K P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDADNKVWRLSQVDESDLKDPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                          IS    F V    F  +       P    +L    F + S++L+M
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMM 357

Query: 354 IKK 356
            K 
Sbjct: 358 RKS 360


>gi|157164267|ref|YP_001466583.1| ribonuclease PH [Campylobacter concisus 13826]
 gi|112800701|gb|EAT98045.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
          Length = 342

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 128/356 (35%), Gaps = 27/356 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPT 59
           M     Y+L     +F  S    +F+   I    +I  ++S  E S   L K+  +++P 
Sbjct: 1   MSRVNKYLLFNFLGTF-ASLFSTLFLIMSIVFFIQIARITSYIEISFGELFKLYSFMLPR 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL  V P  F +     L  +++  E ++I   G S   + +  L  + +LS  L +   
Sbjct: 60  VLLFVVPIAFFVSLAMTLFRLSKENESIVIFTLGGSPNKIARFFLAFSAILSAALLVIAI 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIV 176
           ++ P   + +       +  +    L+   F +   D  + +   + +    T + I + 
Sbjct: 120 VMIPIA-AQLNANFIDYKKTVAKLNLKPTQFGQKFSDWMVYVGSESEDKNGTTYKDIVMF 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     + ++  A++  I    Q+I L+  E        +      FKS  ++T  +   
Sbjct: 179 NPFVKDSQRLITAKNAKITNVNQSIELSLNEGKMYDIKDEIYHQSNFKSMKIRTAQSEEI 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           + V    +  +         + N R +   TY           LFP+   L +I      
Sbjct: 239 SDVGSIKEYWMEA------ASSNKRKKDFSTYVL-------VALFPLASTLFAISLGI-- 283

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIFL 351
              R  K +  +       FGV +G+  +I      P   IP+++        +  
Sbjct: 284 VTYRYEKGMVYVGT-----FGVLFGYFTLIMLFSSKPALAIPLIFFVFLIAGVLLY 334


>gi|15642495|ref|NP_232128.1| hypothetical protein VC2499 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|227082618|ref|YP_002811169.1| putative Inner membrane protein [Vibrio cholerae M66-2]
 gi|229507443|ref|ZP_04396948.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
 gi|229509632|ref|ZP_04399113.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
 gi|229516757|ref|ZP_04406203.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
 gi|229606949|ref|YP_002877597.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
 gi|254851044|ref|ZP_05240394.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744522|ref|ZP_05418474.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|298500670|ref|ZP_07010474.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657080|gb|AAF95641.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|227010506|gb|ACP06718.1| putative Inner membrane protein [Vibrio cholerae M66-2]
 gi|229345820|gb|EEO10792.1| hypothetical protein VCC_000774 [Vibrio cholerae RC9]
 gi|229353106|gb|EEO18045.1| hypothetical protein VCE_001032 [Vibrio cholerae B33]
 gi|229354948|gb|EEO19869.1| hypothetical protein VCF_002672 [Vibrio cholerae BX 330286]
 gi|229369604|gb|ACQ60027.1| hypothetical protein VCD_001858 [Vibrio cholerae MJ-1236]
 gi|254846749|gb|EET25163.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738047|gb|EET93440.1| putative membrane protein [Vibrio cholera CIRS 101]
 gi|297540839|gb|EFH76896.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 356

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 131/357 (36%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K    +           + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEHLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +++      + +  ++ D  + R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  + +L+ L +   +      +    Y     +++TQ +   +  L+++         
Sbjct: 240 VKPEELSLTGLSD-YVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                     +    SF +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 299 VTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|313159015|gb|EFR58390.1| permease, YjgP/YjgQ family [Alistipes sp. HGB5]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 113/355 (31%), Gaps = 11/355 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ +  +   +++I+  +     L +++       IP  
Sbjct: 9   KILDRYILGKFLATYFFAIAMIIIVVVLFDYVEKIDDFTELHAPLRDVIFDYYLNFIPFF 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A+++          
Sbjct: 69  INQFSGLFTFIACIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIGSLSLTLNLW 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSR 179
           + P  +  I    ++       +    +++ +++   +  I  Y + +     + +    
Sbjct: 129 LIPISQRHIVNFESQYIKRKQNNKFNRHIYRQIEPGTFAYIRGYNDASQQASFLALEHYY 188

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANSST 237
                +   A     + + +          R+          +F++    +  E      
Sbjct: 189 SGTMTRSLEASDVKFNPETKCWTAPR-YTKREFDSLGVEKFEQFRNLDTLINLEVTELGE 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I       N++ L            + +     E H R    L   I  LI +       
Sbjct: 248 INDLIQTMNITELNEFLDQQRAKGSDAINIIEVEKHARFAYPLSTFILTLIGVSL----- 302

Query: 298 LVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R+ +    + I +       +  F+    +  ++    P L ++L  I  +F+
Sbjct: 303 SSRKVRGGTGLHIGIGTGLCFSYILFNRFFEEFAKSGTLPPGLAVWLPNIIYLFI 357


>gi|320335464|ref|YP_004172175.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319756753|gb|ADV68510.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 379

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 124/385 (32%), Gaps = 39/385 (10%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +    L        I            +        ++L+  G  +P  L 
Sbjct: 2   ILTRYVTRELLPPLLAGTALFTAILSFGYFFVSSQWL--KNVPPGLILQWIGAQVPDTLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +        +    EL+ + + G S   + +P   +A L+++        + 
Sbjct: 60  KVLPMGVVLMVVVAFGRLATERELIAVQSGGISLGRVARPATVIAALVAVLAVWLSLWVA 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSRD 180
           P+     + L          + L                   +    + G+ +   D  +
Sbjct: 120 PRLNVEARGLYWDTLTGGGLTTLSGRTTDLGGGLTLYLGGYDSATRRMTGVRVQQWDKDN 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS--------PISKDISIMK------FK-- 224
            +   + +A+ G+ + ++  + L D  V+R +         +S D S ++      F   
Sbjct: 180 AELGTLVFARDGTFENNQ--LQLRDYAVYRVNFAAVRDLEAVSDDPSKLRSAIGDVFTAV 237

Query: 225 --------SYTLQTESANSSTIVLKAN----DQNLSFLLNPNPNNPNYRPELLETYRSEF 272
                   + TL T  +   T+   A+    D      L      P  +    +  R + 
Sbjct: 238 NTPPNKDATLTLDTGLSRKETLARYADAIGADSEGWPQLITKLTAPGVKAADRQAARVDL 297

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           +++L   +  ++  L ++  A +      R     + I+L I+   +  F   I      
Sbjct: 298 NRKLALPIGNLVLVLAALPFALRYG----RTLGTSLGIALLIAVAYYLLFFVGIAVANML 353

Query: 333 PYYIPI-LYLFLFCISSIFLLMIKK 356
           P    + ++L     +++ L ++++
Sbjct: 354 PALPELGVWLANLVFAALGLTLLRR 378


>gi|229527564|ref|ZP_04416956.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
 gi|229335196|gb|EEO00681.1| hypothetical protein VCG_000633 [Vibrio cholerae 12129(1)]
 gi|327484987|gb|AEA79394.1| Predicted Permease [Vibrio cholerae LMA3894-4]
          Length = 356

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 135/359 (37%), Gaps = 10/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K                + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +++      + +  ++ D  + R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +L+ L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLTGLSD-YVHYLKASEQDTSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  +    +  F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 299 VTMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|229521564|ref|ZP_04410982.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
 gi|229341158|gb|EEO06162.1| hypothetical protein VIF_002100 [Vibrio cholerae TM 11079-80]
          Length = 356

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 130/357 (36%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K                + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +++      + +  ++ D  + R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  + +L+ L +   +      +    Y     +++TQ +   +  L+++         
Sbjct: 240 VKPEELSLTGLSD-YVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                     +    SF +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 299 VTMGARILSGVIAGFSFYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|119944177|ref|YP_941857.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
 gi|119862781|gb|ABM02258.1| permease YjgP/YjgQ family protein [Psychromonas ingrahamii 37]
          Length = 354

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 125/350 (35%), Gaps = 17/350 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + I  +  +S   ++ ++ +I+ ++++  +   +             IP  
Sbjct: 1   MGILDRYIGKTIFAATFLSLFVLIGLSSIIKFVEQMGSIGVGSYDAWNAAYFVILKIPIE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P    +     L S+  ++EL+++   G S++ +   VL  AI + I + +    
Sbjct: 61  LSVFFPMAALIGALIGLGSLANSSELVVMQAAGISKLRIAGAVLKTAIPMVIVVMVLTEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P        +   A+        +  ++ +  D  ++ I + N  N L  +       
Sbjct: 121 VVPITDKEAYSMRYMAKRGEVQVSNQYGVWVKDAD-SFVSIERMNSKNELFHVQLYFFDE 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +      A+  +            G+V + + +     + +  +Y  +T+       V
Sbjct: 180 NLKLDHAILARKAAFKEGSWFF----GDVSQTNFLEDRTEVKRMSNYIWETKLTPKKLEV 235

Query: 240 L--KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  + +  ++  + N      N   +  + +   F ++       V+  L+S+       
Sbjct: 236 ILGEPDKMSMRDIYNYIIYLEN-NEQDAKRFWLIFWRKAVLPFTIVVMMLLSVSFIFGG- 293

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
                  +  + +   + FG+  GF++ +      P+ +   +  +    
Sbjct: 294 -------LRSVTMGTRLIFGIAAGFTFYVSGELFGPFSLVFNWPPILGAL 336


>gi|311745737|ref|ZP_07719522.1| membrane protein [Algoriphagus sp. PR1]
 gi|126575180|gb|EAZ79530.1| membrane protein [Algoriphagus sp. PR1]
          Length = 357

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 125/358 (34%), Gaps = 2/358 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  I++   +++    L ++ I  V+   ++ +    +      ++K        +
Sbjct: 1   MKLLDKLIIKDFLKTYFFVVLMLILIVLVLDFTEKNDSYIRNDVPSGEIMKYMINYGLYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++TP    +    + + M   TE++ I ++G S   +++P +F A+L+    F+    
Sbjct: 61  NNLLTPITVFISVIFITSKMAGRTEIIAILSSGVSFPRMLRPFIFAAMLIGGVSFLLNGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P     + +      +  T +  + N+  ++  D Y  +S++         F +   R
Sbjct: 121 VLPVATEGVTKFKLT-YIDKTRTASDPNVHIKVGTDSYAYLSRFYKTGNTGYHFTLETIR 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +      +     D  +    L +      +   +D S+ +    TL     +     
Sbjct: 180 DGRLINKLSSDRIQWDTAKNVWTLKNWRFRELNEFGEDYSVGEEMDTTLSITPDDFDLPE 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L        +   + +  Y+ E + R       +I   I ++ + K++  
Sbjct: 240 NHHETLKLPELSRQIRVLEDRGADNVAFYKIERYVRFMSPFAAIILTFIGVIMSAKKSRG 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
               +I   F+   I   +F             P +   L   +F ++ + L     +
Sbjct: 300 GSGFQIAMGFLLAFIYILLFILSRTFAENGASYPIFAVWLPNIVFGLTGLVLYKTVPR 357


>gi|108563456|ref|YP_627772.1| hypothetical protein HPAG1_1031 [Helicobacter pylori HPAG1]
 gi|107837229|gb|ABF85098.1| conserved hypothetical integral membrane protein [Helicobacter
           pylori HPAG1]
          Length = 345

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFGSYLLFRKFILKRY 345


>gi|260596297|ref|YP_003208868.1| lipopolysaccharide ABC transporter permease [Cronobacter turicensis
           z3032]
 gi|260215474|emb|CBA27593.1| Lipopolysaccharide export system permease protein lptG [Cronobacter
           turicensis z3032]
          Length = 359

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 131/358 (36%), Gaps = 5/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++      + +       +   +P  +
Sbjct: 4   SVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLKKTGEGSYTALGAGTYTLLSVPKDI 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L IF       +
Sbjct: 64  QIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAASVMKTAIPLVIFTMAIGEWV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     + L A+     +    ++ ++ +   + ++ I +    N L GI I    D 
Sbjct: 124 APQGEQMARNLRAQQMYGGSLLSTQQGMWAKDGSN-FVYIERVKGENELGGISIYAFNDK 182

Query: 182 QT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    + YA S   D + +   L+   E + K+P     S     ++           + 
Sbjct: 183 RRLESVRYAASAKFDAEHKLWRLSQVDESNLKNPQQITGSQTLTGTWKTNLTPDKLGVVA 242

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  ++S L N          +    Y+     ++ Q L   +  L+++         
Sbjct: 243 LDPDALSISGLRN-YVTYLKASGQDASRYQLNMWSKILQPLSVAVMMLMALSFIFGPLRS 301

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKK 356
                     IS    F V       +  +   P  I  +L    F + S++LLM + 
Sbjct: 302 VPMGVRVVTGISFGFIFYVLDQIFGPLSLVYGIPPIIGALLPSASFFLISLWLLMKRA 359


>gi|52842835|ref|YP_096634.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629946|gb|AAU28687.1| permease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 356

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 9/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      I
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D ++ I+     NTL+  ++   R  
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND-FVSIASVTHENTLR--YVNQFRFD 180

Query: 182 QTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
             H +  A+    +     + I  D +    +          F +               
Sbjct: 181 NQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKA--HHFDTLPWDVPVKPEILKIT 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I        
Sbjct: 239 GTNPDEMTLHEL-NRYLREQQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 298 SSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|262367136|gb|ACY63693.1| membrane protein [Yersinia pestis D182038]
          Length = 358

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 130/364 (35%), Gaps = 17/364 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  AVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+   T +    +     +    +  L+ +   D +I I + +  + L G+ I    ++
Sbjct: 123 APQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD-FIYIQRVSGESELTGVNIYHFDKE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   + YA + + + D +   L+   E    +P     S      +           + 
Sbjct: 182 DRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +  +  ++S L +          +    Y      ++       +  L+++         
Sbjct: 242 MDPDSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPL-- 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-------NPYYIPILYLFLFCISSIFLL 352
               +  P+ + +       + F  + H   +        P    +L   LF + SI LL
Sbjct: 299 ----RSVPMGVRVVTGIFFGFVFYVLDHVFGRLSLVYGIPPMLGALLPSMLFLLISICLL 354

Query: 353 MIKK 356
           + ++
Sbjct: 355 LKRR 358


>gi|165936803|ref|ZP_02225370.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|167420748|ref|ZP_02312501.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|165915452|gb|EDR34062.1| putative permease [Yersinia pestis biovar Orientalis str. IP275]
 gi|166961554|gb|EDR57575.1| putative permease [Yersinia pestis biovar Orientalis str.
           MG05-1020]
          Length = 358

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 130/359 (36%), Gaps = 7/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  AVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+   T +    +     +    +  L+ +   D +I I + +  + L G+ I    ++
Sbjct: 123 APQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD-FIYIQRVSGESELTGVNIYHFDKE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   + YA + + + D +   L+   E    +P     S      +     S     + 
Sbjct: 182 DRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTSEKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +  +  ++S L +          +    Y      ++       +  L++   +    R+
Sbjct: 242 MDPDSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPLRS 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  IF            F  +       P    +L   LF + SI LL+ ++
Sbjct: 301 VPMGVRVVTGIFFGFVFYVLDQV-FGRLSLVYGIPPMLGALLPSMLFLLISICLLLKRR 358


>gi|54298618|ref|YP_124987.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
 gi|148358636|ref|YP_001249843.1| permease [Legionella pneumophila str. Corby]
 gi|296108274|ref|YP_003619975.1| permease [Legionella pneumophila 2300/99 Alcoy]
 gi|53752403|emb|CAH13835.1| hypothetical protein lpp2682 [Legionella pneumophila str. Paris]
 gi|148280409|gb|ABQ54497.1| permease [Legionella pneumophila str. Corby]
 gi|295650176|gb|ADG26023.1| permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 356

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 9/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      I
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETI 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D ++ I+     NTL+  ++   R  
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND-FVSIASVTHENTLR--YVNQFRFD 180

Query: 182 QTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
             H +  A+    +     + I  D +    +          F +               
Sbjct: 181 NQHNLKLARQISEVKYVNNSWIAYDVKQTEFAEDHTKA--YHFDTLPWDVPVKPEILKIT 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I        
Sbjct: 239 GTNPDEMTLHEL-NRYLREQQRNHQNVSNYKFAFFQRITQPLNTMVMMILAIPFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 298 SSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|89075942|ref|ZP_01162317.1| putative permease [Photobacterium sp. SKA34]
 gi|89048383|gb|EAR53961.1| putative permease [Photobacterium sp. SKA34]
          Length = 338

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 118/319 (36%), Gaps = 7/319 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +F ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATFSLTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQAAGFSKLDIGLSTLKTAVPMMIVVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   ++  +      +    +  ++ +  D+ +I + + +  N +  + I    + 
Sbjct: 123 APQAQKMAREYRSAWIYGGSVIAAQSGVWAKN-DNSFIYMGRVHDLNKVDVVNIWQFDNK 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +  A+  S D       ++D  +           S +  K +         + + 
Sbjct: 182 GQLEDVTSAKRASYDKA-TGWTMHDVTITDMIGSSQLTNSQIASKHWETTLTPDKLAVVT 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +LS L +   N      +    Y   F ++  Q +   +  L++   V    R+
Sbjct: 241 VKPEELSLSGLYH-YVNYLKETKQDASRYDLAFWRKALQPISIAVMMLLALSFVFGPLRS 299

Query: 298 LVRQRKKIHPIFISLSISF 316
           +    + +  +    +   
Sbjct: 300 VTMGARVLSGVIFGFAFYI 318


>gi|332749215|gb|EGJ79636.1| hypothetical protein SF434370_4578 [Shigella flexneri 4343-70]
 gi|333009229|gb|EGK28685.1| hypothetical protein SFK218_0005 [Shigella flexneri K-218]
          Length = 360

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 128/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +   +  
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMVIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEVLGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|315617676|gb|EFU98282.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 360

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             I P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA S   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|193069794|ref|ZP_03050744.1| putative permease [Escherichia coli E110019]
 gi|192956848|gb|EDV87301.1| putative permease [Escherichia coli E110019]
          Length = 360

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSAAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|147674275|ref|YP_001217997.1| hypothetical protein VC0395_A2081 [Vibrio cholerae O395]
 gi|153215714|ref|ZP_01950095.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153831207|ref|ZP_01983874.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|229513426|ref|ZP_04402890.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
 gi|229524482|ref|ZP_04413887.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
           VL426]
 gi|254291417|ref|ZP_04962209.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|297581346|ref|ZP_06943269.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124114632|gb|EAY33452.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|146316158|gb|ABQ20697.1| putative membrane protein [Vibrio cholerae O395]
 gi|148873314|gb|EDL71449.1| putative membrane protein [Vibrio cholerae 623-39]
 gi|150422607|gb|EDN14562.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227014389|gb|ACP10599.1| putative Inner membrane protein [Vibrio cholerae O395]
 gi|229338063|gb|EEO03080.1| hypothetical protein VCA_002077 [Vibrio cholerae bv. albensis
           VL426]
 gi|229349303|gb|EEO14259.1| hypothetical protein VCB_001071 [Vibrio cholerae TMA 21]
 gi|297534184|gb|EFH73022.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 356

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 135/359 (37%), Gaps = 10/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K                + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +++      + +  ++ D  + R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +L+ L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLTGLSD-YVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  +    +  F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 299 VTMGARILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 355


>gi|317011287|gb|ADU85034.1| hypothetical protein HPSA_05295 [Helicobacter pylori SouthAfrica7]
          Length = 345

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 135/357 (37%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 4   HYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S   + K  + L+IL+S  L +   I+ P  
Sbjct: 64  PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMAKAFVPLSILVSAILLVFSLILIPTS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 124 KSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQES 181

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN    H        +  + F+   L  + +S NS+       
Sbjct: 182 FILAQKGNINNKNGVFELNLYSGHAYFTQGDKMRKIDFEELHLRNKLKSFNSNDAAYLQG 241

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       N N   +          +R +Q +   +F L S+       +   R 
Sbjct: 242 TDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 291

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + G++     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 292 KTNWSYFYVLGAVGIY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFILKRY 345


>gi|170767103|ref|ZP_02901556.1| putative permease [Escherichia albertii TW07627]
 gi|170124541|gb|EDS93472.1| putative permease [Escherichia albertii TW07627]
          Length = 360

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMMLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAMG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             I P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWIAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA S   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAASAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFVISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|109947019|ref|YP_664247.1| hypothetical protein Hac_0413 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714240|emb|CAJ99248.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 356

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 137/357 (38%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 15  RYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 74

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S   + K  + L+IL+S  L +   ++ P  
Sbjct: 75  PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSILVSAILLVFSLVLIPTS 134

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 135 KSAYYGFLHQ-KKDKIDINIRVGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQES 192

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN  + H        +  + F+   L  + +S N++       
Sbjct: 193 FILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKIDFEELHLRNKLKSFNANDASYLQG 252

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       + N   +          +R +Q +   +F L S+       +   R 
Sbjct: 253 TDYLGYWKRAFGKSANKSQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 302

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + G++     ++H I  + + +  ++ F++  +S  L    I K+Y
Sbjct: 303 KTNWSYFYVLGAVGIY---FLMVHVISTDLFLMTFIFPFIWAFASYLLFRKFILKRY 356


>gi|298206762|ref|YP_003714941.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
           HTCC2559]
 gi|83849393|gb|EAP87261.1| hypothetical protein CA2559_00860 [Croceibacter atlanticus
           HTCC2559]
          Length = 359

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 129/363 (35%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F+   L  + I   + + ++I+ + ++      + +         
Sbjct: 1   MKILDWYILKRYLGTFVTLLLLFIPIGITVNLAEKIDKILANDVPFIEVAEYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++ +   I    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEIIAFLSSGVSFYRFLRPYLIGATIVCLLALIMGMY 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
           + P       +      +         +N++ ++++D  I  + +NP+  +     +   
Sbjct: 121 LAPSASKGFNEFKYTYLKSGGDNQQETKNVYRQINEDEVIYATNFNPSRQSALNFTLEHF 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D        A     + +     L +            +   +     L  E    +  
Sbjct: 181 KDNVLEYKISASRLQYNKEDTTYTLTNFNKRLVGARGDSLIHYRKLDTILPFEFDELTPN 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A   N + L     +        L  Y    +KR +  +   I  +I++      A+
Sbjct: 241 SYVAETLNFNELNKFIEDEKRRGSGNLNRYLVVAYKRWSTPVSAYILTIIAVAV---SAM 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMI 354
            R+      + I ++++F   +    +    EQ+  + P++ ++     F I +I+LL  
Sbjct: 298 KRRGGMGINLAIGIAVAFSFVFLDKVLGTIAEQS-DFSPLVAVWFPNVSFGILAIYLLYN 356

Query: 355 KKK 357
            K+
Sbjct: 357 AKR 359


>gi|303258295|ref|ZP_07344302.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
 gi|302859048|gb|EFL82132.1| permease YjgP/YjgQ [Burkholderiales bacterium 1_1_47]
          Length = 378

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 131/388 (33%), Gaps = 42/388 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-----SLNILLKISGY 55
           MK     I   I +S L   L +V +          +L+  S       S+     ++  
Sbjct: 1   MKIVSRMIFAQIMKSSLFVLLTLVALF------AFFDLIGQSGNIGTSYSMGQAFLLTAL 54

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           ++PT    V P    + +   L+ +   ++  ++  +G         +L   I+L I  +
Sbjct: 55  ILPTRCYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAY 114

Query: 116 ISENIIEPKCRSTIKQLSAKAQ----------LALTFSYLEENLFFRLDDDLYIKISKYN 165
           +  N++ P  +   K+                  +    ++ N         ++ + +  
Sbjct: 115 LLGNLVAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLR 174

Query: 166 PNNTLQG--IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG---EVHRKSPISKDISI 220
           P        +++ D  D     I  A+SG+   +++  +L+D     V      S++ + 
Sbjct: 175 PGEAAYDWVVYVFDRPD-HLTSIVTAKSGTY-SEQEGWVLHDVVEETVPTLPKESREQTQ 232

Query: 221 MKFKSYTL-------QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            + +   +         +      +++K  D +L  L +          +  + + + F 
Sbjct: 233 ARVERKVMKSMVWGKSLDGNIFGLLMIKPEDMSLQEL-HYYIEYLKENGQTYKRFDTAFW 291

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG--FSYIIHKIEQ 331
            +    L  ++  L+S+  A      R       IF  + I    +        +  ++ 
Sbjct: 292 SKAFYPLAILVMLLLSMPFA--YQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDS 349

Query: 332 NPYYIPILY--LFLFCISSIFLLMIKKK 357
            P  I  +   + +   + I +  ++++
Sbjct: 350 VPSIISAILPSVMMTLAAIIAMWYVERR 377


>gi|330504704|ref|YP_004381573.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
 gi|328918990|gb|AEB59821.1| permease YjgP/YjgQ family protein [Pseudomonas mendocina NK-01]
          Length = 354

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 122/360 (33%), Gaps = 11/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +   +  +  ++     L   L       P  
Sbjct: 1   MAKLDRYIGTQVFFAILAVLGIILGLALLFAFIDELGDLNKGDYGLGQALWYVLLTAPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L ++  N+EL I+   G S   ++  V+   ++L +   +    
Sbjct: 61  AYEMLPMAALIGCLIGLGTLASNSELTIMRAAGVSIGRIVWAVMKPMLVLMLAGILIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   A AQ        +  ++       Y+ I+   P   L G+      D
Sbjct: 121 VAPLTENQAQADRALAQGGGAAQSSKRGMW-HRQGQEYVHINAVQPGGVLLGVTRYRFDD 179

Query: 181 TQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      +A+      +    +L++ +         ++   + + + ++       T+V
Sbjct: 180 ERRLLSASFARRAEYRDNH--WMLSNVKTTLLHEDHSEVVNQREERWDIELNPELLGTVV 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF--PVIFGLISIVAADKRA 297
           ++    +++ L     +  + +      Y   F  ++ Q L    ++   IS +    R+
Sbjct: 238 MEPEALSVTGL-WQYIHYLSEQGLNNARYWLAFWTKVLQPLVTGALVLMAISFIFGPLRS 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +   ++    +F  + + F        +        +   +  L    I ++  + + ++
Sbjct: 297 VTLGQR----VFTGVLVGFIFRIAQDLLGPSSLVFGFSPLLAVLVPAGICALAGVWLLRR 352


>gi|262363206|gb|ACY59927.1| membrane protein [Yersinia pestis D106004]
          Length = 225

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 79/216 (36%), Gaps = 7/216 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R   +S +     ++ I +  ++++ +          N++L + G  +P +  
Sbjct: 2   IIIRYLVRETLKSQIAILFILLLIFFSQKLVRILGAAVDGEIPTNVVLSLLGLGVPEMAQ 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    +     L  +   +E+ +++  G  + +LI   L LA+  S    I+   + 
Sbjct: 62  LILPLSLFLGLLMTLGKLYTESEITVMNACGMGKKSLIMAALILALFTSGLAAINTIWLG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDSRDT 181
           P        +   A+   + + L    F   +D    + I           +F+   R  
Sbjct: 122 PWSSKHQDVVLNDAKANPSLAALGGGQFKSSNDGNSALFIGNV-AGKEFNRVFLAQLRPN 180

Query: 182 QT--HKIYYAQSGSIDL---DRQAIILNDGEVHRKS 212
                 +  A SG +       Q +ILN G  +  +
Sbjct: 181 GNQRPSVVVADSGHMSELPDGSQMVILNKGTRYEGT 216


>gi|208434987|ref|YP_002266653.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
 gi|298735907|ref|YP_003728432.1| hypothetical protein HPB8_411 [Helicobacter pylori B8]
 gi|208432916|gb|ACI27787.1| hypothetical protein HPG27_1034 [Helicobacter pylori G27]
 gi|298355096|emb|CBI65968.1| conserved hypothetical protein [Helicobacter pylori B8]
 gi|317012864|gb|ADU83472.1| hypothetical protein HPLT_05405 [Helicobacter pylori Lithuania75]
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 137/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFGSYLLFRKFILKRY 345


>gi|317009699|gb|ADU80279.1| hypothetical protein HPIN_05385 [Helicobacter pylori India7]
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 137/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAVLVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFILKRY 345


>gi|308183196|ref|YP_003927323.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
 gi|308065381|gb|ADO07273.1| hypothetical protein HPPC_05300 [Helicobacter pylori PeCan4]
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +ST      + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSTYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFGSYLLFRKFILKRY 345


>gi|254779645|ref|YP_003057751.1| hypothetical protein HELPY_1062 [Helicobacter pylori B38]
 gi|254001557|emb|CAX29575.1| Conserved hypothetical protein; putative membrane protein; putative
           signal peptide [Helicobacter pylori B38]
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 138/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFILKRY 345


>gi|146283385|ref|YP_001173538.1| permease [Pseudomonas stutzeri A1501]
 gi|145571590|gb|ABP80696.1| predicted permease [Pseudomonas stutzeri A1501]
          Length = 353

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 125/359 (34%), Gaps = 10/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + LM    IV +A +   +  +  V  S   L   L+      P  
Sbjct: 1   MVKLDRYIGIHVFLAILMVLGIIVGLALLFAFIDELGDVQGS-YGLGDALQYVLLTSPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P      +   + AQ A      +  L+    ++ ++ ++   P   L G+       
Sbjct: 120 VAPLSEDIAQARRSLAQGAGEAQSSKRGLW-HRQENEFVHVNAVQPGGVLVGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +     +A+  S   D     L +           ++     + + +Q       T+V
Sbjct: 179 ERRLLSSSFARRASYQGDH--WRLENIATTHFRGDHTEVMRAPEERWDVQLTPQLLGTVV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           ++    +++ L     +    +      Y   F  ++ Q    V   L++I        +
Sbjct: 237 MEPEALSITGL-WRYIHYLGEQGLNNSRYWLAFWTKVLQPAVTVALVLLAISFIFGP--L 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKK 357
           R       IF  + + F VF     ++    Q   + P+L +    C+ ++    + ++
Sbjct: 294 RSVTLGQRIFTGVVVGF-VFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351


>gi|215919050|ref|NP_819829.2| putative permease [Coxiella burnetii RSA 493]
 gi|206583935|gb|AAO90343.2| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
          Length = 372

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 7   RYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 67  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 127 QWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 186

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 187 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 246 ITERVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 298 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 324


>gi|271498969|ref|YP_003331994.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
 gi|270342524|gb|ACZ75289.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech586]
          Length = 356

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 122/357 (34%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSRD 180
            P      +   ++     +    +  L+ +  +D ++ I +   +N LQG+      + 
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND-FVYIQRVAGDNELQGVNLYHFDKH 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           ++   + YA S   +     +   +      S        +    +           + L
Sbjct: 182 SKLLSVRYAASAVYENGSWKLSQVEESDLNDSKQIGGSQTVS-GEWKTNLTPDKLGVVAL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L +          +    Y+     +L   L   +  L+++          
Sbjct: 241 DPDALSIRGLYD-YIKYLRQSGQEANRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I IS    F V       +  +   P  +  L      +    +L++K++
Sbjct: 300 PAGMRIVIGISFGFLFYVLDQIFGPLSLVYHMPPVLGALLPSALFLFISVMLLLKRR 356


>gi|210135251|ref|YP_002301690.1| integral membrane protein [Helicobacter pylori P12]
 gi|210133219|gb|ACJ08210.1| integral membrane protein [Helicobacter pylori P12]
          Length = 345

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 138/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDTAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASMFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFILKRY 345


>gi|148556807|ref|YP_001264389.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
 gi|148501997|gb|ABQ70251.1| permease YjgP/YjgQ family protein [Sphingomonas wittichii RW1]
          Length = 364

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 118/358 (32%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           ++  LY+ R     F      +V +   + +L    ++++        L        P +
Sbjct: 9   RTMTLYMARMFLVRFAAVLAALVIVLMALDLLGESGDILAYPGNGDAQLWLYVTLRTPQI 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T     ++N+N+E++ +   G S   ++ P++  ++ + I  F     
Sbjct: 69  IARFLPFAALLATLITFVTLNQNSEIISMKAAGISAHQILAPLVVASLGVGIVSFTFNER 128

Query: 121 IEPKCRSTIKQLSAKAQLALT-FSYLEENLFFRLDDDLY--IKISKYNPNNTLQGIFIVD 177
           +  +  +T+          +     +  N++ R  DDL     +        L  + I D
Sbjct: 129 VVARATATLTAWQDADYGPIPRDRGIVPNIWVRDGDDLIHATAVRGRGAQARLDSVTIYD 188

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
               +   I   +          I        R          +    +     +   + 
Sbjct: 189 RDGGRLISIIKGERAVQAAGGWRIT----GASRFDVAKGVTLRLAGFDFAKGVTADRFTL 244

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +    +++  L      + +         R+    +L+  L  V+  L++ VAA   A
Sbjct: 245 ANVDPASKSIVQL-RTAIADLDAAGRPTGPLRAGLWHKLSGPLSAVLMPLLAAVAAFGLA 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                     I ++L  ++ V   F+  +  +   P ++     FL  +     ++I+
Sbjct: 304 RSGHLFIRAVIGMALGFAYFVADNFALAMGNLGAYPPFLAAWAPFLLFLLIGETVLIR 361


>gi|331001131|ref|ZP_08324762.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
 gi|329569436|gb|EGG51214.1| permease, YjgP/YjgQ family [Parasutterella excrementihominis YIT
           11859]
          Length = 378

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 131/388 (33%), Gaps = 42/388 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-----SLNILLKISGY 55
           MK     I   I +S L   L +V +          +L+  S       S+     ++  
Sbjct: 1   MKIVSRMIFAQIMKSSLFVLLTLVALF------AFFDLIGQSGNIGTSYSMGQAFLLTAL 54

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           ++PT    V P    + +   L+ +   ++  ++  +G         +L   I+L I  +
Sbjct: 55  ILPTRCYEVLPIAVMLGSIFTLSRLASTSQFTVLRVSGIGPWRFCGMLLMPGIVLVICAY 114

Query: 116 ISENIIEPKCRSTIKQLSAKAQ----------LALTFSYLEENLFFRLDDDLYIKISKYN 165
           +  N++ P  +   K+                  +    ++ N         ++ + +  
Sbjct: 115 LLGNLVAPPAQRLAKEFKLDISGSAFTGKELDSGIWVRDVQRNEAGEPKKISFVNVQRLR 174

Query: 166 PNNTLQG--IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG---EVHRKSPISKDISI 220
           P        I++ D  D     I  A+SG+   +++  +L+D     V      S++ + 
Sbjct: 175 PGEAAYDWVIYVFDRPD-HLTSIVTAKSGTY-SEQEGWVLHDVVEETVPTLPKESREQTQ 232

Query: 221 MKFKSYTL-------QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            + +   +         +      +++K  D +L  L +          +  + + + F 
Sbjct: 233 ARVERKVMKSMVWGKSLDGNIFGLLMIKPEDMSLQEL-HYYIEYLKENGQTYKRFDTAFW 291

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG--FSYIIHKIEQ 331
            +    L  ++  L+S+  A      R       IF  + I    +        +  ++ 
Sbjct: 292 SKAFYPLAILVMLLLSMPFA--YQNARAGGMAIKIFCGIMIGIFYYALNNLFAFMSALDS 349

Query: 332 NPYYIPILY--LFLFCISSIFLLMIKKK 357
            P  I  +   + +   + I +  ++++
Sbjct: 350 VPSIISAILPSVMMTLAAIIAMWYVERR 377


>gi|311281180|ref|YP_003943411.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
 gi|308750375|gb|ADO50127.1| permease YjgP/YjgQ family protein [Enterobacter cloacae SCF1]
          Length = 360

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 127/361 (35%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I  + LM+   +V    +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTILTTILMTLFMLVS---LSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVAISVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     + L A+A    +    ++ ++ +   + YI I +    + L GI I   
Sbjct: 122 EWMAPQGEQMARNLRAQAMYGSSLLSTQQGMWAKDGHN-YIYIERIKGADELGGISIYSF 180

Query: 179 RDTQT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +    + YA S   D D++   L+   E +  +P+    S     ++          
Sbjct: 181 NDKRRLQSVRYAASAKFDADKKVWRLSQVDESNLTNPLQITGSQTVSSTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLYN-YVKYLKSSGQDPGRYQLNMWSKVFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  +  L            LMI++
Sbjct: 300 LRSVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSATFFLISLWLMIRR 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|54295468|ref|YP_127883.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
 gi|53755300|emb|CAH16794.1| hypothetical protein lpl2554 [Legionella pneumophila str. Lens]
 gi|307611506|emb|CBX01180.1| hypothetical protein LPW_28791 [Legionella pneumophila 130b]
          Length = 356

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 9/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + +  +  +  L +V +   I  + +I+ +  +   +          +P  +
Sbjct: 4   KILDRYIAKTVLSAIGLVTLMLVGLQIFILFVNQIDDLGRADYGIVQAGVFVLLQMPYQV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S   +   VL  ++++ + +      +
Sbjct: 64  YLFFPIASLLGCLVGLGVLANHSELVVMRAAGISIGQITGAVLKASLIVILLITSLGETV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       +    A            ++ R  +D ++ I+     NTL+  ++   R  
Sbjct: 124 VPVMAHYANEYKVSALTGGQALLTPRGVWVRNGND-FVSIASVTRENTLR--YVNQFRFD 180

Query: 182 QTHKIYYAQS-GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
             H +  A+    I     + I  D +    +          F +               
Sbjct: 181 NQHNLKLARQISEIKYVNNSWIAYDVKQTEFAEDHTKA--YHFDTLPWDVPVKPEILKIT 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               ++  L  L N          + +  Y+  F +R+TQ L  ++  +++I        
Sbjct: 239 GTNPDEMTLHEL-NRYLREQQRNHQNVANYKFAFFQRITQPLNTMVMMILAIPFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    +   +   F +   F   +  + Q P  +      L        LM + +
Sbjct: 298 SSTMGSKLLVGAMVGFGFHILNRFFGPVSTVFQWPPELAAFSPTLIFSLIGIYLMRRVR 356


>gi|260772183|ref|ZP_05881100.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
 gi|260613050|gb|EEX38252.1| putative membrane protein [Vibrio metschnikovii CIP 69.14]
          Length = 356

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 128/358 (35%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATTTLVLVTFVGLSGIIKYVEQLRKVGDGSYDLLQALFFVLLSVPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++  +G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALAASSELVVMQASGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I ++K +                
Sbjct: 123 APQAQKMARDMRAFATSGGNILSVRTGVWARDAND-FIFVAKIDNERLYGLNMWRFDEQK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSSTIVL 240
           Q   + +A+      D    ++   ++             +    +         + + +
Sbjct: 182 QLRHVVFAEQVDYLGD-NHWLMKQVQITDLQDNVVLTKQYLDVYQWRTALAPDKLAVVTV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
           K  +  LS L +   +      +    Y     ++LTQ     +  L++   +    R++
Sbjct: 241 KPEELALSGLYD-YVHYLKASEQDASRYELALWRKLTQPFSIGVMMLMALSFIFGPLRSV 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               + +  +    +  F +   F   +  +   P     +   L  ++   +L+ +K
Sbjct: 300 TMGARILSGVIAGFT--FYISSEFFGPLSLVYGFPPAFGAIAPSLVFLTIAVMLLRRK 355


>gi|38704251|ref|NP_313266.2| hypothetical protein ECs5239 [Escherichia coli O157:H7 str. Sakai]
 gi|89110978|ref|AP_004758.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|90111715|ref|NP_418683.4| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|110644621|ref|YP_672351.1| putative membrane protein YjgQ [Escherichia coli 536]
 gi|157155171|ref|YP_001465771.1| putative permease [Escherichia coli E24377A]
 gi|157163737|ref|YP_001461055.1| putative permease [Escherichia coli HS]
 gi|168749566|ref|ZP_02774588.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|168754844|ref|ZP_02779851.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|168760517|ref|ZP_02785524.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|168766553|ref|ZP_02791560.1| putative permease [Escherichia coli O157:H7 str. EC4486]
 gi|168774016|ref|ZP_02799023.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|168782789|ref|ZP_02807796.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|168784912|ref|ZP_02809919.1| putative permease [Escherichia coli O157:H7 str. EC869]
 gi|168797842|ref|ZP_02822849.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|170021730|ref|YP_001726684.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|170083701|ref|YP_001733021.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170681768|ref|YP_001746666.1| putative permease [Escherichia coli SMS-3-5]
 gi|188493811|ref|ZP_03001081.1| putative permease [Escherichia coli 53638]
 gi|191168708|ref|ZP_03030487.1| putative permease [Escherichia coli B7A]
 gi|193063693|ref|ZP_03044781.1| putative permease [Escherichia coli E22]
 gi|194426570|ref|ZP_03059124.1| putative permease [Escherichia coli B171]
 gi|194437817|ref|ZP_03069912.1| putative permease [Escherichia coli 101-1]
 gi|195937288|ref|ZP_03082670.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208808552|ref|ZP_03250889.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208812170|ref|ZP_03253499.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208821551|ref|ZP_03261871.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209396919|ref|YP_002273807.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|217326107|ref|ZP_03442191.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218556809|ref|YP_002389723.1| hypothetical protein ECIAI1_4493 [Escherichia coli IAI1]
 gi|218561420|ref|YP_002394333.1| hypothetical protein ECS88_4849 [Escherichia coli S88]
 gi|218692649|ref|YP_002400861.1| hypothetical protein ECED1_5115 [Escherichia coli ED1a]
 gi|218698010|ref|YP_002405677.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218702965|ref|YP_002410594.1| hypothetical protein ECIAI39_4735 [Escherichia coli IAI39]
 gi|218707868|ref|YP_002415387.1| hypothetical protein ECUMN_4794 [Escherichia coli UMN026]
 gi|227886684|ref|ZP_04004489.1| inner membrane protein [Escherichia coli 83972]
 gi|238903363|ref|YP_002929159.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|253775115|ref|YP_003037946.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164187|ref|YP_003047297.1| inner membrane protein [Escherichia coli B str. REL606]
 gi|254796282|ref|YP_003081119.1| inner membrane protein [Escherichia coli O157:H7 str. TW14359]
 gi|256019914|ref|ZP_05433779.1| conserved inner membrane protein [Shigella sp. D9]
 gi|256025198|ref|ZP_05439063.1| conserved inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260847093|ref|YP_003224871.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|260858414|ref|YP_003232305.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|260871014|ref|YP_003237416.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|261225381|ref|ZP_05939662.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255366|ref|ZP_05947899.1| inner membrane protein [Escherichia coli O157:H7 str. FRIK966]
 gi|293402887|ref|ZP_06646984.1| membrane protein [Escherichia coli FVEC1412]
 gi|293407982|ref|ZP_06651822.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417762|ref|ZP_06660384.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B185]
 gi|293476565|ref|ZP_06664973.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B088]
 gi|298378413|ref|ZP_06988297.1| lipopolysaccharide export system permease lptG [Escherichia coli
           FVEC1302]
 gi|300818513|ref|ZP_07098722.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300821369|ref|ZP_07101517.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300899412|ref|ZP_07117667.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300906110|ref|ZP_07123829.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300916358|ref|ZP_07133100.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300923940|ref|ZP_07139950.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300928088|ref|ZP_07143636.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|300950208|ref|ZP_07164149.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300957115|ref|ZP_07169356.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300972387|ref|ZP_07171920.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300988160|ref|ZP_07178580.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|301024382|ref|ZP_07188070.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|301050052|ref|ZP_07196964.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|301304685|ref|ZP_07210793.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|301325193|ref|ZP_07218717.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|301643390|ref|ZP_07243440.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|306815520|ref|ZP_07449669.1| Inner membrane protein yjgQ [Escherichia coli NC101]
 gi|307140957|ref|ZP_07500313.1| Inner membrane protein yjgQ [Escherichia coli H736]
 gi|307312963|ref|ZP_07592591.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|309792903|ref|ZP_07687331.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|312965943|ref|ZP_07780169.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312973920|ref|ZP_07788091.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331645011|ref|ZP_08346128.1| inner membrane protein YjgQ [Escherichia coli H736]
 gi|331650395|ref|ZP_08351467.1| inner membrane protein YjgQ [Escherichia coli M605]
 gi|331656096|ref|ZP_08357084.1| inner membrane protein YjgQ [Escherichia coli M718]
 gi|331660843|ref|ZP_08361775.1| inner membrane protein YjgQ [Escherichia coli TA206]
 gi|331665931|ref|ZP_08366825.1| inner membrane protein YjgQ [Escherichia coli TA143]
 gi|331671170|ref|ZP_08372003.1| inner membrane protein YjgQ [Escherichia coli TA271]
 gi|331671403|ref|ZP_08372201.1| inner membrane protein YjgQ [Escherichia coli TA280]
 gi|331680400|ref|ZP_08381059.1| inner membrane protein YjgQ [Escherichia coli H591]
 gi|331681282|ref|ZP_08381919.1| inner membrane protein YjgQ [Escherichia coli H299]
 gi|83288182|sp|P0ADC7|LPTG_ECOL6 RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|83288183|sp|P0ADC6|LPTG_ECOLI RecName: Full=Lipopolysaccharide export system permease protein
           lptG
 gi|31323181|gb|AAP43525.1| YjgQ [Escherichia coli B]
 gi|85677009|dbj|BAE78259.1| conserved inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082400|gb|AAC77219.2| lipopolysaccharide export ABC permease of the LptBFGC export
           complex [Escherichia coli str. K-12 substr. MG1655]
 gi|110346213|gb|ABG72450.1| putative membrane protein YjgQ [Escherichia coli 536]
 gi|157069417|gb|ABV08672.1| putative permease [Escherichia coli HS]
 gi|157077201|gb|ABV16909.1| putative permease [Escherichia coli E24377A]
 gi|169756658|gb|ACA79357.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|169891536|gb|ACB05243.1| conserved inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170519486|gb|ACB17664.1| putative permease [Escherichia coli SMS-3-5]
 gi|187770216|gb|EDU34060.1| putative permease [Escherichia coli O157:H7 str. EC4196]
 gi|188016197|gb|EDU54319.1| putative permease [Escherichia coli O157:H7 str. EC4113]
 gi|188489010|gb|EDU64113.1| putative permease [Escherichia coli 53638]
 gi|188999755|gb|EDU68741.1| putative permease [Escherichia coli O157:H7 str. EC4076]
 gi|189357825|gb|EDU76244.1| putative permease [Escherichia coli O157:H7 str. EC4401]
 gi|189364202|gb|EDU82621.1| putative permease [Escherichia coli O157:H7 str. EC4486]
 gi|189368974|gb|EDU87390.1| putative permease [Escherichia coli O157:H7 str. EC4501]
 gi|189375169|gb|EDU93585.1| putative permease [Escherichia coli O157:H7 str. EC869]
 gi|189379540|gb|EDU97956.1| putative permease [Escherichia coli O157:H7 str. EC508]
 gi|190901256|gb|EDV61026.1| putative permease [Escherichia coli B7A]
 gi|192930680|gb|EDV83286.1| putative permease [Escherichia coli E22]
 gi|194415309|gb|EDX31577.1| putative permease [Escherichia coli B171]
 gi|194423313|gb|EDX39305.1| putative permease [Escherichia coli 101-1]
 gi|208728353|gb|EDZ77954.1| putative permease [Escherichia coli O157:H7 str. EC4206]
 gi|208733447|gb|EDZ82134.1| putative permease [Escherichia coli O157:H7 str. EC4045]
 gi|208741674|gb|EDZ89356.1| putative permease [Escherichia coli O157:H7 str. EC4042]
 gi|209158319|gb|ACI35752.1| putative permease [Escherichia coli O157:H7 str. EC4115]
 gi|217322328|gb|EEC30752.1| putative permease [Escherichia coli O157:H7 str. TW14588]
 gi|218354742|emb|CAV01806.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218363578|emb|CAR01235.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218368189|emb|CAR05997.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218372951|emb|CAR20832.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|218430213|emb|CAR11214.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|218434965|emb|CAR15906.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|222036034|emb|CAP78779.1| Inner membrane protein yjgQ [Escherichia coli LF82]
 gi|227836257|gb|EEJ46723.1| inner membrane protein [Escherichia coli 83972]
 gi|238860250|gb|ACR62248.1| conserved inner membrane protein [Escherichia coli BW2952]
 gi|242379782|emb|CAQ34609.1| LptG, subunit of LptABCFG ABC transporter [Escherichia coli
           BL21(DE3)]
 gi|253326159|gb|ACT30761.1| permease YjgP/YjgQ family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976090|gb|ACT41761.1| conserved inner membrane protein [Escherichia coli B str. REL606]
 gi|253980246|gb|ACT45916.1| conserved inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254595682|gb|ACT75043.1| conserved inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757063|dbj|BAI28565.1| inner membrane protein [Escherichia coli O26:H11 str. 11368]
 gi|257762240|dbj|BAI33737.1| inner membrane protein [Escherichia coli O103:H2 str. 12009]
 gi|257767370|dbj|BAI38865.1| inner membrane protein [Escherichia coli O111:H- str. 11128]
 gi|260450918|gb|ACX41340.1| permease YjgP/YjgQ family protein [Escherichia coli DH1]
 gi|281181360|dbj|BAI57690.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|284924432|emb|CBG37557.1| putative permease [Escherichia coli 042]
 gi|291321018|gb|EFE60460.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B088]
 gi|291429802|gb|EFF02816.1| membrane protein [Escherichia coli FVEC1412]
 gi|291430480|gb|EFF03478.1| lipopolysaccharide export system permease lptG [Escherichia coli
           B185]
 gi|291472233|gb|EFF14715.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298280747|gb|EFI22248.1| lipopolysaccharide export system permease lptG [Escherichia coli
           FVEC1302]
 gi|300298210|gb|EFJ54595.1| putative inner membrane protein [Escherichia coli MS 185-1]
 gi|300305970|gb|EFJ60490.1| putative inner membrane protein [Escherichia coli MS 200-1]
 gi|300316133|gb|EFJ65917.1| putative inner membrane protein [Escherichia coli MS 175-1]
 gi|300356990|gb|EFJ72860.1| putative inner membrane protein [Escherichia coli MS 198-1]
 gi|300396608|gb|EFJ80146.1| putative inner membrane protein [Escherichia coli MS 69-1]
 gi|300402053|gb|EFJ85591.1| putative inner membrane protein [Escherichia coli MS 84-1]
 gi|300410966|gb|EFJ94504.1| putative inner membrane protein [Escherichia coli MS 45-1]
 gi|300416318|gb|EFJ99628.1| putative inner membrane protein [Escherichia coli MS 115-1]
 gi|300419818|gb|EFK03129.1| putative inner membrane protein [Escherichia coli MS 182-1]
 gi|300450448|gb|EFK14068.1| putative inner membrane protein [Escherichia coli MS 116-1]
 gi|300463885|gb|EFK27378.1| putative inner membrane protein [Escherichia coli MS 187-1]
 gi|300526258|gb|EFK47327.1| putative inner membrane protein [Escherichia coli MS 119-7]
 gi|300528917|gb|EFK49979.1| putative inner membrane protein [Escherichia coli MS 107-1]
 gi|300840035|gb|EFK67795.1| putative inner membrane protein [Escherichia coli MS 124-1]
 gi|300847954|gb|EFK75714.1| putative inner membrane protein [Escherichia coli MS 78-1]
 gi|301078220|gb|EFK93026.1| putative inner membrane protein [Escherichia coli MS 146-1]
 gi|305851182|gb|EFM51637.1| Inner membrane protein yjgQ [Escherichia coli NC101]
 gi|306907131|gb|EFN37638.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|307556432|gb|ADN49207.1| putative membrane protein YjgQ [Escherichia coli ABU 83972]
 gi|308123189|gb|EFO60451.1| putative inner membrane protein [Escherichia coli MS 145-7]
 gi|309704766|emb|CBJ04117.1| putative permease [Escherichia coli ETEC H10407]
 gi|310331454|gb|EFP98710.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|312289186|gb|EFR17080.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312948915|gb|ADR29742.1| inner membrane protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063569|gb|ADT77896.1| conserved inner membrane protein [Escherichia coli W]
 gi|315138813|dbj|BAJ45972.1| inner membrane protein yjgQ [Escherichia coli DH1]
 gi|315255621|gb|EFU35589.1| putative inner membrane protein [Escherichia coli MS 85-1]
 gi|315293627|gb|EFU52979.1| putative inner membrane protein [Escherichia coli MS 153-1]
 gi|315298979|gb|EFU58233.1| putative inner membrane protein [Escherichia coli MS 16-3]
 gi|320639019|gb|EFX08665.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H7 str. G5101]
 gi|320644389|gb|EFX13454.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H- str. 493-89]
 gi|320649706|gb|EFX18230.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H- str. H 2687]
 gi|320655103|gb|EFX23064.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660609|gb|EFX28070.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665536|gb|EFX32582.1| lipopolysaccharide ABC transporter permease [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323157529|gb|EFZ43638.1| hypothetical protein ECEPECA14_0586 [Escherichia coli EPECa14]
 gi|323162061|gb|EFZ47933.1| hypothetical protein ECE128010_1826 [Escherichia coli E128010]
 gi|323171708|gb|EFZ57354.1| hypothetical protein ECLT68_3917 [Escherichia coli LT-68]
 gi|323176177|gb|EFZ61769.1| hypothetical protein ECOK1180_4867 [Escherichia coli 1180]
 gi|323181996|gb|EFZ67407.1| hypothetical protein ECOK1357_4674 [Escherichia coli 1357]
 gi|323189856|gb|EFZ75134.1| hypothetical protein ECRN5871_1643 [Escherichia coli RN587/1]
 gi|323380351|gb|ADX52619.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
 gi|323935384|gb|EGB31732.1| inner membrane protein yjgQ [Escherichia coli E1520]
 gi|323940180|gb|EGB36374.1| inner membrane protein yjgQ [Escherichia coli E482]
 gi|323945995|gb|EGB42033.1| inner membrane protein yjgQ [Escherichia coli H120]
 gi|323960303|gb|EGB55944.1| inner membrane protein yjgQ [Escherichia coli H489]
 gi|323970484|gb|EGB65743.1| inner membrane protein yjgQ [Escherichia coli TA007]
 gi|323975395|gb|EGB70496.1| inner membrane protein yjgQ [Escherichia coli TW10509]
 gi|324005135|gb|EGB74354.1| putative inner membrane protein [Escherichia coli MS 57-2]
 gi|324013726|gb|EGB82945.1| putative inner membrane protein [Escherichia coli MS 60-1]
 gi|324019239|gb|EGB88458.1| putative inner membrane protein [Escherichia coli MS 117-3]
 gi|324118823|gb|EGC12715.1| inner membrane protein yjgQ [Escherichia coli E1167]
 gi|331035986|gb|EGI08224.1| inner membrane protein YjgQ [Escherichia coli H736]
 gi|331040789|gb|EGI12947.1| inner membrane protein YjgQ [Escherichia coli M605]
 gi|331046450|gb|EGI18540.1| inner membrane protein YjgQ [Escherichia coli M718]
 gi|331051885|gb|EGI23924.1| inner membrane protein YjgQ [Escherichia coli TA206]
 gi|331056982|gb|EGI28976.1| inner membrane protein YjgQ [Escherichia coli TA143]
 gi|331061759|gb|EGI33685.1| inner membrane protein YjgQ [Escherichia coli TA271]
 gi|331071248|gb|EGI42605.1| inner membrane protein YjgQ [Escherichia coli TA280]
 gi|331071863|gb|EGI43199.1| inner membrane protein YjgQ [Escherichia coli H591]
 gi|331081503|gb|EGI52664.1| inner membrane protein YjgQ [Escherichia coli H299]
 gi|332083263|gb|EGI88494.1| hypothetical protein SB521682_5142 [Shigella boydii 5216-82]
 gi|332083781|gb|EGI88999.1| hypothetical protein SD15574_5323 [Shigella dysenteriae 155-74]
 gi|332346341|gb|AEE59675.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 360

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|217034468|ref|ZP_03439880.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
 gi|216943070|gb|EEC22547.1| hypothetical protein HP9810_890g13 [Helicobacter pylori 98-10]
 gi|308062367|gb|ADO04255.1| hypothetical protein HPCU_05530 [Helicobacter pylori Cuz20]
 gi|317178605|dbj|BAJ56393.1| hypothetical protein HPF30_0296 [Helicobacter pylori F30]
 gi|332673892|gb|AEE70709.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 345

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFVSYLLFRKFILKRY 345


>gi|37528300|ref|NP_931645.1| hypothetical protein plu4479 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787738|emb|CAE16851.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 359

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 129/358 (36%), Gaps = 4/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I ++ LM+   +V ++ +I+ ++++  V     +           +P  +
Sbjct: 3   GVLDRYIGRTILQTILMTLFMLVSLSGIIKFVEQLRKVGQGEYTTISAGLYVLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   +    +
Sbjct: 63  QIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAGSVMKTAIPLVILTMVIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+     +   A+  L  +     + ++    DD +I I +   +  ++G+ I   + D
Sbjct: 123 APQGEQMARNYRAQKMLGGSLVSTNKGMWTIDGDD-FIYIQRIVSDTEIKGVNIYHFNDD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
            +   + YA S   D D     L+  E    +   K   S      + +       + + 
Sbjct: 182 KKLLSVKYAASAVYDKDNDLWKLSQVEESDLTDSKKITGSQRISADWKILLTPEQLNVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+    ++S L            +    Y+    K++   L   +  L+++         
Sbjct: 242 LEPEALSISGLY-QYIKYLKQSEQESGRYQLNMWKKIFAPLSVAVMMLMALSFIFGPLRS 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     IS    F V       +  +   P  +  L   L  ++    L++K++
Sbjct: 301 VPMGVRIVTGISFGFLFYVLNEIFGPLSLVYSVPAVLAALLPSLLFLTVSIYLLLKRR 358


>gi|30065451|ref|NP_839622.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
 gi|56480550|ref|NP_709939.2| hypothetical protein SF4227 [Shigella flexneri 2a str. 301]
 gi|30043715|gb|AAP19434.1| hypothetical protein S4488 [Shigella flexneri 2a str. 2457T]
 gi|56384101|gb|AAN45646.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|313646463|gb|EFS10925.1| hypothetical protein SF2457T_5378 [Shigella flexneri 2a str. 2457T]
 gi|332748940|gb|EGJ79363.1| hypothetical protein SFK671_4979 [Shigella flexneri K-671]
 gi|332749802|gb|EGJ80215.1| hypothetical protein SF274771_5046 [Shigella flexneri 2747-71]
 gi|332763113|gb|EGJ93356.1| hypothetical protein SF293071_4855 [Shigella flexneri 2930-71]
 gi|333010221|gb|EGK29654.1| hypothetical protein SFVA6_0009 [Shigella flexneri VA-6]
 gi|333011252|gb|EGK30666.1| hypothetical protein SFK272_0205 [Shigella flexneri K-272]
 gi|333011952|gb|EGK31337.1| hypothetical protein SFK304_5275 [Shigella flexneri K-304]
 gi|333012149|gb|EGK31531.1| hypothetical protein SFK227_5242 [Shigella flexneri K-227]
          Length = 360

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEVLGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|86147549|ref|ZP_01065859.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
 gi|85834588|gb|EAQ52736.1| hypothetical protein MED222_22708 [Vibrio sp. MED222]
          Length = 323

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 117/319 (36%), Gaps = 8/319 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  +  +  V ++ +I+ ++++  V   T  L   L      IP  +
Sbjct: 3   KILDLYIGRTIIATTSLVLVTFVGLSGIIKYVEQLRKVGRGTYDLLQALYFVLLSIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++   G S++ +   VL  AI L + + +     
Sbjct: 63  EMFFPMAALLGALIGLGMLAASSELVVMQAAGFSKLDIGLSVLKTAIPLMVIVTLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + L   +    +    +  ++ R  +D +I I K + +            + 
Sbjct: 123 APQAQKMARDLRTISVAGGSIISTQSGVWARDAND-FIFIVKIDDDKLYGLNMWRYDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKFKSYTLQTESANSSTIV 239
                 Y++      D     + D EV       +    S+  F S+         + + 
Sbjct: 182 ALKTAIYSKEVDYVGD-NVWTMRDVEVTSFENEIQVTKESLPTF-SWETSLAPDKLAIVT 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +K  + +LS L +   +      +    Y     +++TQ +   +  L++   +    R+
Sbjct: 240 VKPEELSLSGLYD-YVSYLKASEQDAARYELALWRKITQPISIAVMMLMALSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISF 316
           +    + +  +    +   
Sbjct: 299 VTMGARILSGVIAGFTFYI 317


>gi|116747638|ref|YP_844325.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696702|gb|ABK15890.1| permease YjgP/YjgQ family protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 360

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 113/366 (30%), Gaps = 24/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+LR     F+++      +  ++   + +             +       P+V
Sbjct: 1   MRIIPRYVLRHFLPVFMLALFTFTSLYLIVDFFENMEQFIEKRVPAADTIAYFLNKTPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     L  + RN EL+ ++  G   +T + P++  A  ++    +    
Sbjct: 61  AAQGIPMAALLGALITLGLLKRNRELIALEAAGVKTVTYVTPIVAAAFFIAAVHLVLGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR- 179
           +      ++ Q+S K           +  F    ++++         N +  +   D R 
Sbjct: 121 VS----RSMNQVSTKIWNEQVQR--RKGHFSWGVENVWYH-----GQNVIYQVRFYDKRT 169

Query: 180 -----------DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
                      D     +    +     D        G   + S    +      +++TL
Sbjct: 170 QTLEKVSLFFLDPSFRLVQRLDARRFRWDGARWQAEQGLFLKFSESGTEQETFDQRAFTL 229

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           Q   A+ S +     + +    L                Y  E H R+   L  ++  ++
Sbjct: 230 QETPADFSGLETIPEELD-WLDLYRYAEKIRQEGYNSLPYIIELHLRVAFPLSAIVLAIL 288

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            I+ A ++++         I + +  S+ V       +      P  + +    +  +++
Sbjct: 289 GIIIALRQSMHGGIALGVGIGLLVGSSYFVVQQLGCALAGAGALPPVVGVWAANVIFLAA 348

Query: 349 IFLLMI 354
              L I
Sbjct: 349 AVYLWI 354


>gi|323965651|gb|EGB61105.1| inner membrane protein yjgQ [Escherichia coli M863]
 gi|327250208|gb|EGE61927.1| hypothetical protein ECSTEC7V_5012 [Escherichia coli STEC_7v]
          Length = 360

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLESVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|261839824|gb|ACX99589.1| hypothetical protein HPKB_1021 [Helicobacter pylori 52]
 gi|315586981|gb|ADU41362.1| conserved hypothetical protein [Helicobacter pylori 35A]
 gi|317182344|dbj|BAJ60128.1| hypothetical protein HPF57_1054 [Helicobacter pylori F57]
          Length = 345

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFVSYLLFRKFILKRY 345


>gi|22124661|ref|NP_668084.1| hypothetical protein y0748 [Yersinia pestis KIM 10]
 gi|45440497|ref|NP_992036.1| hypothetical protein YP_0645 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594885|ref|YP_069076.1| membrane protein, permease [Yersinia pseudotuberculosis IP 32953]
 gi|108808931|ref|YP_652847.1| hypothetical protein YPA_2940 [Yersinia pestis Antiqua]
 gi|108810814|ref|YP_646581.1| hypothetical protein YPN_0649 [Yersinia pestis Nepal516]
 gi|145600503|ref|YP_001164579.1| hypothetical protein YPDSF_3249 [Yersinia pestis Pestoides F]
 gi|153949000|ref|YP_001402495.1| permease [Yersinia pseudotuberculosis IP 31758]
 gi|153997519|ref|ZP_02022619.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|162420587|ref|YP_001608340.1| hypothetical protein YpAngola_A4049 [Yersinia pestis Angola]
 gi|165925751|ref|ZP_02221583.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|166010149|ref|ZP_02231047.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214265|ref|ZP_02240300.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399516|ref|ZP_02305040.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167423672|ref|ZP_02315425.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170025892|ref|YP_001722397.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893895|ref|YP_001871007.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930455|ref|YP_002348330.1| hypothetical protein YPO3439 [Yersinia pestis CO92]
 gi|229839083|ref|ZP_04459242.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896571|ref|ZP_04511738.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|229899646|ref|ZP_04514787.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901017|ref|ZP_04516141.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|270489197|ref|ZP_06206271.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294505143|ref|YP_003569205.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
 gi|21957470|gb|AAM84335.1|AE013676_8 hypothetical protein y0748 [Yersinia pestis KIM 10]
 gi|45435354|gb|AAS60913.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588167|emb|CAH19773.1| putative membrane protein, permease [Yersinia pseudotuberculosis IP
           32953]
 gi|108774462|gb|ABG16981.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780844|gb|ABG14902.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115349066|emb|CAL22028.1| putative membrane protein [Yersinia pestis CO92]
 gi|145212199|gb|ABP41606.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149289156|gb|EDM39236.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152960495|gb|ABS47956.1| putative permease [Yersinia pseudotuberculosis IP 31758]
 gi|162353402|gb|ABX87350.1| putative permease [Yersinia pestis Angola]
 gi|165922363|gb|EDR39540.1| putative permease [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991056|gb|EDR43357.1| putative permease [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204497|gb|EDR48977.1| putative permease [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167052020|gb|EDR63428.1| putative permease [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057842|gb|EDR67588.1| putative permease [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169752426|gb|ACA69944.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696921|gb|ACC87550.1| permease YjgP/YjgQ family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682356|gb|EEO78448.1| conserved inner membrane protein [Yersinia pestis Nepal516]
 gi|229687138|gb|EEO79213.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695449|gb|EEO85496.1| conserved inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700349|gb|EEO88381.1| conserved inner membrane protein [Yersinia pestis Pestoides A]
 gi|262363204|gb|ACY59925.1| hypothetical protein YPD4_3021 [Yersinia pestis D106004]
 gi|270337701|gb|EFA48478.1| inner membrane family protein [Yersinia pestis KIM D27]
 gi|294355602|gb|ADE65943.1| hypothetical protein YPZ3_3034 [Yersinia pestis Z176003]
          Length = 358

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 129/359 (35%), Gaps = 7/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+ L +V ++ +I+ + ++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGRTILNTILMTLLMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTILSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  AVFFPMAALLGALLGLGTLASRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+   T +    +     +    +  L+ +   D +I I + +  + L G+ I    ++
Sbjct: 123 APQGEQTARNFRTQQMYGGSLLSTQSGLWAKDGSD-FIYIQRVSGESELTGVNIYHFDKE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +   + YA + + + D +   L+   E    +P     S      +           + 
Sbjct: 182 DRLLSVRYAATATYEKDNKTWRLSQVDESDLSNPTQVTGSQTLTGEWKTNLTPEKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +  +  ++S L +          +    Y      ++       +  L++   +    R+
Sbjct: 242 MDPDSLSISGL-HDYSKYLQQSGQESNRYELSMWSKVFAPFSVAVMMLMALSFIFGPLRS 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    + +  IF            F  +       P    +L   LF + SI LL+ ++
Sbjct: 301 VPMGVRVVTGIFFGFVFYVLDQV-FGRLSLVYGIPPMLGALLPSMLFLLISICLLLKRR 358


>gi|15644990|ref|NP_207160.1| hypothetical protein HP0362 [Helicobacter pylori 26695]
 gi|2313464|gb|AAD07430.1| conserved hypothetical integral membrane protein [Helicobacter
           pylori 26695]
          Length = 345

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K    L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKVFAPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +ST      + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSTYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-TKNNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++  +S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFASYLLFRKFILKRY 345


>gi|297380268|gb|ADI35155.1| Hypothetical protein HPV225_1109 [Helicobacter pylori v225d]
 gi|308063875|gb|ADO05762.1| hypothetical protein HPSAT_05215 [Helicobacter pylori Sat464]
          Length = 345

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 135/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|317180825|dbj|BAJ58611.1| hypothetical protein HPF32_1029 [Helicobacter pylori F32]
          Length = 345

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|150007422|ref|YP_001302165.1| hypothetical protein BDI_0773 [Parabacteroides distasonis ATCC
           8503]
 gi|256839671|ref|ZP_05545180.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375396|ref|ZP_06985353.1| membrane protein [Bacteroides sp. 3_1_19]
 gi|149935846|gb|ABR42543.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256738601|gb|EEU51926.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267896|gb|EFI09552.1| membrane protein [Bacteroides sp. 3_1_19]
          Length = 361

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 126/360 (35%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P    T      K        Y++      ++  +      Y+  + +   F +   
Sbjct: 125 YIIPPANETRIDFQNKYIRNKKVDYVKNAQ-LEIEPGVIAYFDSYDARSNMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A+S   D   Q   + D  +     + + IS    K  TL    ++    
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQ-WTVIDYMIRDFDGMREHISQGSRKDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V          L              ++T++ E+HKR    +   I   I   +   R +
Sbjct: 243 VNDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIG-ASLSSRKI 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                    I ++LS S   +  F  +      N Y  P +  ++     + I + + +K
Sbjct: 302 KGGMGMNIGIGLALSFS---YILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLYQK 358


>gi|313680813|ref|YP_004058552.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153528|gb|ADR37379.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 346

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 101/282 (35%), Gaps = 17/282 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y+LR +G   L     +V +     + + +  + +       + +   + +P  
Sbjct: 1   MNTLSRYLLREVGAYLLGGLAVVVLLLLGGVLFEVLAPLLARGADPLSIGQYLAHRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +       L+ M  ++EL ++  +G  R  ++  ++    LL++  F++   
Sbjct: 61  LVRGLPIAYLFALLLALSRMAEDSELKVLLASGIPRERVLGVLVGFGALLALVGFVAGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P+      Q+  +A LA   + L+   FFR      I + + +           D R 
Sbjct: 121 WVPRELQRANQVLREAILAKPRALLQPGTFFRDAYGRTIYVGQVDGQG------FGDVRV 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+ G  +  R  ++L+ G            +I +F+   L  E    S    
Sbjct: 175 LSEGEVLTAKRGRFEPGR--LVLDAGMRVTFDGSRPR-TITEFERGLLPLEDLAVSPPT- 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSE---FHKRLTQW 279
           K  D  L+ L            +    Y +E   + ++  + 
Sbjct: 231 KPADLPLAELRRRIAEY----KKFGRPYHAEATAYWRKWAEP 268


>gi|110807998|ref|YP_691518.1| hypothetical protein SFV_4231 [Shigella flexneri 5 str. 8401]
 gi|110617546|gb|ABF06213.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 360

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEVLGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVITGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|281603538|gb|ADA76522.1| Inner membrane protein yjgQ [Shigella flexneri 2002017]
          Length = 361

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEVLGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTDLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|15804854|ref|NP_290895.1| hypothetical protein Z5874 [Escherichia coli O157:H7 EDL933]
 gi|26251171|ref|NP_757211.1| hypothetical protein c5363 [Escherichia coli CFT073]
 gi|254037286|ref|ZP_04871363.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|291285674|ref|YP_003502492.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
 gi|332281055|ref|ZP_08393468.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519274|gb|AAG59461.1|AE005658_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111603|gb|AAN83785.1|AE016771_296 Hypothetical protein yjgQ [Escherichia coli CFT073]
 gi|537104|gb|AAA97159.1| ORF_o361 [Escherichia coli str. K-12 substr. MG1655]
 gi|13364717|dbj|BAB38662.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209749438|gb|ACI73026.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749440|gb|ACI73027.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749442|gb|ACI73028.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749444|gb|ACI73029.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|209749446|gb|ACI73030.1| hypothetical protein ECs5239 [Escherichia coli]
 gi|226840392|gb|EEH72394.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|290765547|gb|ADD59508.1| Inner membrane protein yjgQ [Escherichia coli O55:H7 str. CB9615]
 gi|332103407|gb|EGJ06753.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 361

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|304396397|ref|ZP_07378278.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
 gi|304355906|gb|EFM20272.1| permease YjgP/YjgQ family protein [Pantoea sp. aB]
          Length = 358

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 131/360 (36%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +++   +V ++ +I+ + ++      + S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQGSYSALSAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+          +  L+ + D + +I I +   +N + G+ I +  D 
Sbjct: 123 APSGEQMARNYRAQQLYGGALVSTQNGLWAK-DGNSFIYIERIKGDNEIDGVSIYNFNDQ 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    + YA + + D D++  +L+   E +   P     S      +           + 
Sbjct: 182 RRLQSVRYAATATWDKDKKRWLLSQVDESNLTDPKQITGSQSLSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  ++  L +          +    Y      ++ Q L   +  L+++        +
Sbjct: 242 LDPDALSIRGL-HSYSKYLKQSGQEAGRYELNMWSKIFQPLSVAVMMLMALSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +   +S  F  +     F  +       P    IL  F F   S+F+L+ ++
Sbjct: 299 RSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAILPSFAFFAISMFMLIKRR 358


>gi|304382916|ref|ZP_07365398.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335941|gb|EFM02189.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 402

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 132/364 (36%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+R    +++ +   I+ I+ V  + + +   S     L  I+       +P 
Sbjct: 42  IKRLDRYIIRKFIGTYIFAIALIISISIVFDVNENLAKFSEYKAPLKAIVFDYYMNFVPY 101

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   LI+P +F  +L+S   F    
Sbjct: 102 FANLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGISFRRLIRPYMFSCVLISGLSFYLSA 161

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---GIFIV 176
            + P   + I+Q           +   EN+  ++   +   +  Y  +NT++   G  + 
Sbjct: 162 YVIPHG-TVIRQNFETLYKNKKKNTSAENVQLQVGKGVIAYMKLY--DNTIKKGYGFCLY 218

Query: 177 DSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
              + +      A      +I   +      D ++ +   + + I+    K   LQ E  
Sbjct: 219 KFENKKLVSHMTASEIQYDTISDSKYHWKAMDWKIRQLRGLREKITSGITKDTVLQMEPT 278

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +        LL+      +     +  Y+ E+HKR+       I  +I +  +
Sbjct: 279 DLVYSKGQQETFTSPQLLDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIGVSLS 338

Query: 294 DKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            ++   R+      + I L++SFG +          I  N   I   +L     + +   
Sbjct: 339 SRK---RKGGMGLYLGIGLALSFGYIMLQTVSSTFAINANTPPILAAWLPNIIFAFVAYF 395

Query: 353 MIKK 356
             +K
Sbjct: 396 CYRK 399


>gi|120553895|ref|YP_958246.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
 gi|120323744|gb|ABM18059.1| permease YjgP/YjgQ family protein [Marinobacter aquaeolei VT8]
          Length = 353

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 121/358 (33%), Gaps = 8/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y++R +G +  +  + ++ +  +   +  +    +  ++L   L      +P  
Sbjct: 1   MHKIDGYVMRTVGGAMFLVMVVVLSLDVIFAFIAELEDTRNEYQTLQA-LWYVALTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L SM  ++EL +I   G S   ++   +  A+++ +        
Sbjct: 60  IYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSLKRIVWSAMKPALIVVLLGVAIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   A A  A +     E ++   + + ++ ++   PN  L G+ +    D
Sbjct: 120 VAPTTERIAQSDKAVALGAGSSVASAEGVW-HREGNTFMHLNAVQPNGVLHGVSLFRFDD 178

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q     +A+      D    +L +    R  P      +     +      +  S ++
Sbjct: 179 ARQLQVASFAERAIYQGD--YWLLENVTSTRIEPERTVRDVSASLRWETGLSPSVLSVLI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +K  + +++ L          +      Y   F K+    L   +  L++I        +
Sbjct: 237 VKPENLSMTGLYT-YAAYLGEQGLSAAQYWLAFWKKALMPLGTAVMVLVAISFVFGP--L 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           R       +F  L +     +    +        +   I  L    ++ I   ++ ++
Sbjct: 294 RSVTMGFRVFTGLLVGLLFKYMQDLLGPMSMVYGFNPLIAVLAPIVVNGIVGAVLMRR 351


>gi|261838424|gb|ACX98190.1| integral membrane protein [Helicobacter pylori 51]
          Length = 345

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 137/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFVSYLLFRKFILKRY 345


>gi|242310520|ref|ZP_04809675.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522918|gb|EEQ62784.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 341

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 120/326 (36%), Gaps = 17/326 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     + F  + L + FIA V+  ++   +      S   LL +  Y +P +L 
Sbjct: 2   RIKNYLFHSFSQIFFPTFLVLFFIASVVIFIRIAGVTFVVQISFLELLSLYFYTLPLMLF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +     L+ ++ + EL ++   G S   +IK    +A+L SI LFI   I+ 
Sbjct: 62  FVIPLSFFVACALSLSRLSFDYELPVLFALGMSPNKIIKIFFPIALLASISLFILSLILT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q   + +       L+   F +   +  + + + + + + + I ++     +
Sbjct: 122 PLSDLAYRQFLEE-RKNSININLQAGEFGQKLGNWLVYVKENHEDMSYKDIVLLSF--GK 178

Query: 183 THKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              + +A+   I      +  IL++G+++R  P    I  + FK+  L+    + S   L
Sbjct: 179 EGGLIFAKDAKIINKDGVMEAILDNGKIYR--PDENAIEKIAFKTLILRNSITDISGQNL 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI-FGLISIVAADKRALV 299
              +         +      R   +    S         LFP +      ++        
Sbjct: 237 GVFEYWNRAFYENDRQRKTLRDLSMYVLMS---------LFPFVSLYFFPLLGVKNPRYQ 287

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYI 325
           R    +  + I        +   +Y+
Sbjct: 288 RNHTILQSMLIIGVFYALTYLVANYL 313


>gi|237807324|ref|YP_002891764.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
 gi|237499585|gb|ACQ92178.1| permease YjgP/YjgQ family protein [Tolumonas auensis DSM 9187]
          Length = 356

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 124/362 (34%), Gaps = 16/362 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R +  + LM  + +V ++ +I+ + ++  V   + +    +    Y IP   
Sbjct: 3   GILDRYVGRTVIMAILMCTVMLVGLSSLIKFVDQLQNVGEGSFTTFHAILRVLYAIPGDT 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G SR  ++   L   I +   + +    +
Sbjct: 63  VLFFPMAALLGGVIGLGQLASSSELVVLQAAGLSRAKIVISALKTVIPVMFLIMLLGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P        +   A      +     ++ +   D +I I     + +L+G+ +    + 
Sbjct: 123 APIAEQKAHDIKTSAISGGKITASTYGIWVKEGHD-FISIDTLFRDGSLRGVTLY-RFNL 180

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT-----LQTESANSS 236
                   +S      +QA  L D  + +          +KFK+ T              
Sbjct: 181 NGELQEVIRSAMAVYQQQAWHLKDIVITQLQDK----QQIKFKNLTDWVWKTNLTPDKLG 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAAD 294
            + +  ++ +   L N   +      + ++ Y  EF ++L   +  +   L++   +   
Sbjct: 237 VVSVSPDELSAQGLYN-YISYMKSNGQQVDDYELEFWRKLLAPVSVIAMLLLAASTIFGP 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R++    + I  + +  +          +    +   P  I      L  +     ++ 
Sbjct: 296 LRSVSMGARLISGVMMGFAFFVANQVLGPF--SLVYNVPPVIGASVPSLIFMGVAIYMLQ 353

Query: 355 KK 356
           ++
Sbjct: 354 RR 355


>gi|187731850|ref|YP_001882954.1| putative permease [Shigella boydii CDC 3083-94]
 gi|187428842|gb|ACD08116.1| putative permease [Shigella boydii CDC 3083-94]
          Length = 360

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|308184829|ref|YP_003928962.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
 gi|308060749|gb|ADO02645.1| hypothetical protein HPSJM_05385 [Helicobacter pylori SJM180]
          Length = 345

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 137/359 (38%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + G++     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGIY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|301028101|ref|ZP_07191379.1| putative inner membrane protein [Escherichia coli MS 196-1]
 gi|299878818|gb|EFI87029.1| putative inner membrane protein [Escherichia coli MS 196-1]
          Length = 360

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVVMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|332879242|ref|ZP_08446939.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682662|gb|EGJ55562.1| permease, YjgP/YjgQ family [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 368

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 135/374 (36%), Gaps = 34/374 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   ++Y+++    ++  S   I+ IA V    + I+  +++      I+ +     +P 
Sbjct: 8   ISKLDMYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPY 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +  A ++++  F+   
Sbjct: 68  FSNLFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGA 127

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   + +  K +       ++     ++D  +   I  ++        F +
Sbjct: 128 YVIPKGSVTRLNFENIYKKKKKTEFAQNVQ----LQVDTGVIAFIEHFDGRTKTGYHFSL 183

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           D   + +      A S S D       L+D E +     +  +  +K     +   S   
Sbjct: 184 DKFVNKKLVSHLTAASVSYDT------LSD-ERYHWRINNYTLRELKGMREYISHGSRID 236

Query: 236 STIVLKANDQNLS-----FLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIF 285
           S I ++ +D  L+      L +P       +     +     +  E+ KR        I 
Sbjct: 237 SIIAMEPSDFLLTRNQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFIL 296

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPIL--YLF 342
            +I +         R+RK    +++ + ++    +  F  +      N  + P L  +L 
Sbjct: 297 TIIGLSL-----SARKRKGGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLP 351

Query: 343 LFCISSIFLLMIKK 356
               + I   + KK
Sbjct: 352 NIIFAFIAFFLYKK 365


>gi|312959169|ref|ZP_07773688.1| membrane protein [Pseudomonas fluorescens WH6]
 gi|311286939|gb|EFQ65501.1| membrane protein [Pseudomonas fluorescens WH6]
          Length = 359

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 130/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     I+ +A +  ++  +  + + T ++  +L       P  
Sbjct: 1   MVKLDRYIGSSVLIAILAVLGIIIGLASLFAMVDEMKSI-NDTYTVWNVLNYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  N+EL I+   G S   ++  V+   +LL +   +    
Sbjct: 60  LYEMMPMAALIGCLIGLGSLASNSELTIMRAAGVSIGRIVWAVMKPMLLLMVCSVLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +T +   A AQ +      +  L+     D +I I+   P   L G+      +
Sbjct: 120 VAPPAEATAQANRALAQGSGDAQSAKHGLW-HRQGDEFIHINAVQPGGLLIGVTRYRFDK 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +       +A+S     ++  +          V + +  S ++  +  + + +  +    
Sbjct: 179 ERHMLSSSFAKSAQYSNEKWQLTDITTTYFRNVGQGTQASTEVINVPSEEWGISLKPELL 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAA 293
           +T+V+      +S L +   +    +      Y   F  ++ Q +    ++   IS V  
Sbjct: 239 NTVVMIPESLPISGLWS-YIHYLKDQGLNNGRYWLAFWVKVLQPVVTAALVLMAISFVFG 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R++   ++    +F  + + F      + +        +      L    I ++    
Sbjct: 298 PLRSVTLGQR----VFTGVLVGFIFQIAQNLLGPLSLVFGFSPLFAVLVPTTICALAGFW 353

Query: 354 IKKK 357
           + ++
Sbjct: 354 LLRR 357


>gi|307637757|gb|ADN80207.1| integral membrane protein [Helicobacter pylori 908]
          Length = 345

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 135/357 (37%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 4   HYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  
Sbjct: 64  PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 124 KSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQES 181

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN    H        +  + F+   L  + +S NS+       
Sbjct: 182 FILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDATYLQG 241

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       N N   +          +R +Q +   +F L S+       +   R 
Sbjct: 242 TDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 291

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 292 KTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|161505032|ref|YP_001572144.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866379|gb|ABX23002.1| hypothetical protein SARI_03163 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 360

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 124/363 (34%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D + +   L+   E   ++P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTDLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                          IS    F V       +  +   P  +  L            LM+
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLML 357

Query: 355 KKK 357
           +K 
Sbjct: 358 RKS 360


>gi|225024724|ref|ZP_03713916.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
           23834]
 gi|224942519|gb|EEG23728.1| hypothetical protein EIKCOROL_01610 [Eikenella corrodens ATCC
           23834]
          Length = 356

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 124/364 (34%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y++R +G + L + L +V +    +++  ++ V     ++  L+   G  +   
Sbjct: 1   MKLLTRYLIRRLGTATLYALLALVVLFSFFEVINAVDDVGDGNYTVLTLILYVGMRLFGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L+ +   +E  +I  +G S   +I  V  + +L  +        
Sbjct: 61  MYTLLPLAVLIGCLAALSQLASASEWTVIRTSGASLKRIIATVASVGLLAGLLGVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSR 179
           + P      ++L   A             F +  D+  I + +  P+  L GI I   ++
Sbjct: 121 VAPYMEQRAERLRLHAVQQTVSLGGSGLWFRQGSDN--INVREMLPDGRLLGIRIYRYNQ 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  + A  G ++ +     L        +        +    +           ++
Sbjct: 179 HAALESAWQASEGRVNGNGT-WTLKQVARTHIAAERTQTEQLASVEWPSDVGVELLGVLL 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +  +  +   L     ++     +    Y + + ++L   L   +  L+++         
Sbjct: 238 VDTDQMSARSL-KMYIDHLQSNGQQTAAYATVWWRKLLYPLICTVMALVALAF--TPQSS 294

Query: 300 RQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       +F+ + +     +      Y+       P+   IL   +F I++    +I++
Sbjct: 295 RHGNIGVRLFLGICLGLAFHFAGLLSGYVAQLSSMPPFGAAILPGTVFAIAAA--WLIRR 352

Query: 357 KYTK 360
           +  +
Sbjct: 353 QEVR 356


>gi|227114630|ref|ZP_03828286.1| putative permease [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
 gi|227327172|ref|ZP_03831196.1| putative permease [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 358

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   ++     +    +  L+ +  +D +I I +   +  L G+ I    D 
Sbjct: 123 SPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND-FIYIERVTGDKELSGVNIYHFDDK 181

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIV 239
                  YA S   + DR    L+  +    S   +      F   +           + 
Sbjct: 182 NKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTFSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ +  ++  L N          +    Y+     ++   +   +  L+++        +
Sbjct: 242 LEPDALSIRGLHN-YAKYLKQSGQESNRYQLNMWSKIFAPVSVAVMMLMAVSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +S  F  +     F  +       P    IL   +F   S+ LL+ ++
Sbjct: 299 RSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKRR 358


>gi|317177843|dbj|BAJ55632.1| hypothetical protein HPF16_1035 [Helicobacter pylori F16]
          Length = 345

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 135/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  S+    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSSKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWEKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|114776388|ref|ZP_01451433.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
 gi|114553218|gb|EAU55616.1| hypothetical protein SPV1_01672 [Mariprofundus ferrooxydans PV-1]
          Length = 352

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 129/362 (35%), Gaps = 14/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     +I        L++   ++ I  +I+   +   +        ++++     IP +
Sbjct: 1   MPVVFRWIFSGCLSRSLVTMSALLAIFVIIESFDKARYL-GHGLDGRLMVEYMLLKIPFM 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +  +  L  ++RN E++ +   G     ++ P+  +A+L ++  FI    
Sbjct: 60  LSEFMPVIMLIGASLYLIELSRNQEVVALRAAGLGINKVLLPLSSVALLAALASFIIGEW 119

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P   + + Q+     Q   +    +  +   L D           N+    + +  + 
Sbjct: 120 VTPVTNTRLDQIEQVHIQHKKSS---QPGV-QWLKDGHRFFRLTPLTNHQFALLMLKTAP 175

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    +   +        +    L+D  V       + + + K K+  +++     +  +
Sbjct: 176 DGAWLQRIDSPRAHY--SQGVWSLSDARV-STPSSDQVMHVEKLKNMEVKSAIGPETADL 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K    + S L +   NN  +      TY    H++ +  L  ++  +++  A       
Sbjct: 233 PKPGHMDFSELYH-YINNLKHAGLGAGTYVYALHRKFSAPLACLLMVIMA-AALCLHTGN 290

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R  +    + +S+S+    +        +       P +   L   +F  +++FLL+ ++
Sbjct: 291 RNSRASWGLMLSISLGLVFYVIGNAGYLLAASNRIPPAFAAWLPSLVFGGTAVFLLLKRE 350

Query: 357 KY 358
            +
Sbjct: 351 GH 352


>gi|188527872|ref|YP_001910559.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
 gi|188144112|gb|ACD48529.1| hypothetical protein HPSH_05605 [Helicobacter pylori Shi470]
          Length = 345

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 136/359 (37%), Gaps = 19/359 (5%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN    H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYSGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                L +       N N   +          +R +Q +   +F L S+       +   
Sbjct: 240 QGTDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANP 289

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           R K +  +  +  + GV+     ++H I  + + +   + F++   S  L   +I K+Y
Sbjct: 290 RFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFVSYLLFRKIILKRY 345


>gi|332828499|gb|EGK01199.1| hypothetical protein HMPREF9455_02391 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 684

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 85/215 (39%), Gaps = 4/215 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    ++++     F M+ +  +FI  +  + + +  +      +++L ++  Y    +
Sbjct: 4   IKRLYTFVIQTFLPVFAMTFVICLFIVLMQFLWRYVEDLVGKGLDISVLAELFLYAAFQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +PM  P    + +     ++    ELL I  +G S +  +KP++ L   +SI  F  +N 
Sbjct: 64  IPMALPLSLLLASLMAFGNLGERLELLSIKASGVSLLKAMKPLIILVAFISIGAFFFQNE 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P+ +  ++ L    +       + E  F+    +  + + K N     L  + I D+ 
Sbjct: 124 AMPRIQVKLRALLWSIKQKSPELDIPEGSFYSDIPNYNLYVKKKNRETKMLHEVMIYDTS 183

Query: 180 DT-QTHKIYYAQSGSID--LDRQAIILNDGEVHRK 211
                  +    S  +    D+  ++LN     + 
Sbjct: 184 KGFDNMAVIVCDSALMRGSEDKTFLLLNLYHGQQF 218



 Score = 39.6 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            + +  +  E H++ T     +IF  I    A   A++R+     P+ +S+++ F V++ 
Sbjct: 383 QKNIRFHEVERHRKFTLSFACLIFFFIG---APLGAIIRKGGLGMPVVVSVAL-FIVYYI 438

Query: 322 FSYIIHKIEQNPYY--IPILYLFLFCISSIFLLMIKKKY 358
              I +K+ ++  +     ++L  F +  + + +  K  
Sbjct: 439 IDNIGYKMARDGVWEAWQGMWLSSFALFPLGVFLTYKAM 477


>gi|86158886|ref|YP_465671.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775397|gb|ABC82234.1| permease YjgP/YjgQ [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 360

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 117/349 (33%), Gaps = 17/349 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +      + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNAAAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  +++ 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDVVG 120

Query: 123 PKCRSTIKQLSA--KAQLALTFSYL---EENLFFRLDDDLYIK-ISKYNPNNTLQGIFIV 176
            +     ++++A   A+      +L   E   +FR  D   +  +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGVDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
           +  +          +  +  D +A IL D E     P     +   + K Y         
Sbjct: 181 ELSEA-FTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERAERKRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    S L+           + +  ++ E + RL        F  I       
Sbjct: 240 AVIAGKPDQMRWSTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYP-----FAGIPGALLAL 293

Query: 296 RALVRQRKKIHPIFISLSISF--GVFWGFSYIIHKIEQNPYYIPILYLF 342
              +R+ +K H     L       +FWG   +   +  +    P +  +
Sbjct: 294 ALALRRDRKGHLSAALLEAVGVTLLFWGMQGVSSALGLSGRVAPWVASW 342


>gi|15612083|ref|NP_223735.1| hypothetical protein jhp1018 [Helicobacter pylori J99]
 gi|4155611|gb|AAD06602.1| putative [Helicobacter pylori J99]
          Length = 345

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 133/357 (37%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 4   HYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L     I+ P  
Sbjct: 64  PITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLAFSLILIPTS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 124 KSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-TENNSYDNLVLFSNKSLSQES 181

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN    H        +  + F+   L  + +S NS+       
Sbjct: 182 FILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQG 241

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       N N   +          +R +Q +   +F L S+       +   R 
Sbjct: 242 TDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 291

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 292 KTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|229588598|ref|YP_002870717.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229360464|emb|CAY47321.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 359

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 127/366 (34%), Gaps = 18/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI   +  + L     I+ +A    +   I+ V   S T ++  +L       P
Sbjct: 1   MAKLDRYIGSSVLIAILAVLGIILGLA---SLFAFIDEVGNVSDTYTVWDVLSYVALTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +     L S+  ++EL I+   G S   ++  V+   +LL     +  
Sbjct: 58  RRLYDMMPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMACSVLIG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD- 177
             + P   +T +   A AQ +      +  L+ R  ++ +I I+   P   L G+     
Sbjct: 118 EYVAPPAETTAQANRALAQGSGDAQSSKHGLWHRQGEE-FIHINAVQPGGLLIGVTRYTF 176

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKF--KSYTLQTESA 233
            ++    +  +A+      ++  +  +      +     +    ++    + + +  +  
Sbjct: 177 DKERHLLESSFAKRAQYSGEKWQLSDVTTTYFRNIGQGTNARTEVINVPSEEWDIALKPE 236

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIV 291
             +T+V+      +S L +   +    +      Y   F  ++ Q +    ++   IS +
Sbjct: 237 LLNTVVMIPESLPISGLWS-YIHYLKDQGLNNGRYWLAFWVKVLQPVVTAALVLMAISFI 295

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R++   ++    +F  + + F        +        +      L    I ++  
Sbjct: 296 FGPLRSVTLGQR----VFTGVLVGFTFRIAQDLLGPSSLVFGFSPLFAVLVPTAICALAG 351

Query: 352 LMIKKK 357
             + ++
Sbjct: 352 FWLLRR 357


>gi|300312407|ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300075192|gb|ADJ64591.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 135/377 (35%), Gaps = 23/377 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y    I RS L +    + +    +++ ++  V  +   L   +      +P  
Sbjct: 1   MRVIQRYFTSEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+ +   +E  I+  +  S     + +  + +  ++   +   +
Sbjct: 61  VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGQAARVLARIGVGFAVLTIVFGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF-----------RLDDDLYIKISKYNPNNT 169
           I PK     ++L  +AQ A   S     ++             +    +I I    P+  
Sbjct: 121 IAPKATEWAEKLKLQAQGASLSSQFRSGMWAKDVIRDHGLEGNVVGSRFINIRTVQPDGR 180

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISKDISIMKFK 224
           ++G+ + +   D    ++  A++G  D + Q     ++ +D        I++ +  +K  
Sbjct: 181 IEGVKLYELDSDFHMARMVTAKAGMYDGNHQWTLSDVVQSDFTGGSDRKITEPVKTVKSA 240

Query: 225 SYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
             TL +E +    +++    D+  ++ L     +     +  + Y   F K++   L   
Sbjct: 241 QLTLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPLS-- 298

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY--- 340
           IF ++++         R       IF  + I        S   H    N +   +     
Sbjct: 299 IFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFVTAALP 358

Query: 341 -LFLFCISSIFLLMIKK 356
            L    +++  L  +++
Sbjct: 359 SLLFMALAAGALWWVER 375


>gi|294492514|gb|ADE91270.1| putative permease [Escherichia coli IHE3034]
 gi|307629338|gb|ADN73642.1| hypothetical protein UM146_21570 [Escherichia coli UM146]
 gi|315288387|gb|EFU47785.1| putative inner membrane protein [Escherichia coli MS 110-3]
 gi|323950669|gb|EGB46547.1| inner membrane protein yjgQ [Escherichia coli H252]
 gi|323955548|gb|EGB51312.1| inner membrane protein yjgQ [Escherichia coli H263]
          Length = 360

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|325996358|gb|ADZ51763.1| integral membrane protein [Helicobacter pylori 2018]
 gi|325997946|gb|ADZ50154.1| hypothetical protein hp2017_1044 [Helicobacter pylori 2017]
          Length = 345

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 135/357 (37%), Gaps = 19/357 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  + 
Sbjct: 4   HYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFIL 63

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P  F       L+ ++ + ELL+  + G S  T+ K  + L++L+S  L +   I+ P  
Sbjct: 64  PITFFAACALGLSRLSYDHELLVFFSLGVSPKTMTKAFVPLSLLVSAILLVFSLILIPTS 123

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
           +S       + +       +    F +   D  + + K   NN+   + +  ++      
Sbjct: 124 KSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQES 181

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKAN 243
              AQ G+I+       LN    H        +  + F+   L  + +S NS+       
Sbjct: 182 FILAQKGNINNQNGVFELNLYNGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYLQG 241

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
              L +       N N   +          +R +Q +   +F L S+       +   R 
Sbjct: 242 TDYLGYWKKAFGKNANKNQK----------RRFSQAILVSLFPLASVFLIPLFGIANPRF 291

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL--MIKKKY 358
           K +  +  +  + GV+     ++H I  + + +   + F++   S  L    I K+Y
Sbjct: 292 KTNWSYFYVLGAVGVY---FLMVHVISTDLFLMTFFFPFIWAFISYLLFRKFILKRY 345


>gi|241765202|ref|ZP_04763186.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
 gi|241365131|gb|EER60003.1| permease YjgP/YjgQ family protein [Acidovorax delafieldii 2AN]
          Length = 368

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 128/380 (33%), Gaps = 37/380 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES---LNILLKISGYLI 57
           MK    +I R    +     L  + + +   ++  +  V S+ ++   L+  L      I
Sbjct: 1   MKVLRRFIHREAFFAVGFVTLGFLALFFFFDLIDELRWVGSTGQNGYQLSHALLFVSLSI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      ++ +L L     +  F  
Sbjct: 61  PSHLYELLPITVLIGTIFVMARLAQSSEFTIMRTSGMGPWRALRTLLTLGGFFVLLTFAI 120

Query: 118 ENIIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
            + + P      +    +   +     T ++L+E    + D    + +   + +  +  +
Sbjct: 121 GDYVAPLTERAAQLIKVRHLGRLTSGATGAWLKE---RQQDHSFAVNVRALSSDGGMVDV 177

Query: 174 FIVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            I +  +        +A +G          L   + +     S + + ++         +
Sbjct: 178 RIFEFDEKGRLASQIHAATGQFGSAGT-WDLQQVQRNSFVQKSSEEARVE------SISA 230

Query: 233 ANSSTIVLKANDQNLSFLLNPNP----------NNPNYRPELLETYRSEFHKRLTQWLFP 282
                    + D   + LL P+            +     +  + Y  EF +++   L  
Sbjct: 231 PVWQWPTRISADMVAASLLKPDRMATVDLFQYIRHLEANGQSAQRYEIEFWRKVFYPLSC 290

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI--- 336
           ++  ++++  A      R       +F  +      F     F Y  +    +P+     
Sbjct: 291 LVMVVLALPFA--YLHFRAGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAA 348

Query: 337 -PILYLFLFCISSIFLLMIK 355
             ++Y  L   +  +L++ +
Sbjct: 349 PGLIYSVLSLAAFGWLVLRR 368


>gi|29654138|ref|NP_819830.1| putative permease [Coxiella burnetii RSA 493]
 gi|161831591|ref|YP_001596891.1| putative permease [Coxiella burnetii RSA 331]
 gi|29541404|gb|AAO90344.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
 gi|161763458|gb|ABX79100.1| putative permease [Coxiella burnetii RSA 331]
          Length = 355

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 129/365 (35%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVVMTFIGEV 120

Query: 121 IEPKCRSTIKQL-SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FIV 176
           I P+  ++ ++    +   A+ +  L + ++       +I I   +  N +  +   FI 
Sbjct: 121 IAPQLEASGEETKLTELSKAVGYKALGD-VWLHGAQ-SFIHIGSVDAKNKISEVSQFFI- 177

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANS 235
            +   Q     YA  G         IL + +  + +P  + +  I KF   T+     + 
Sbjct: 178 -NNKHQLLSAVYAPKGEYVKGH--WILYNVKQTQFTPNRTTEKKIAKFP-LTIVFNPDHL 233

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                  + Q++  L +               Y   F +R  Q L  V+   + +     
Sbjct: 234 QQGRKMVDRQSIVGLYH-TIRYHQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              +RQ      I   + I F  +     F       +  P +  ++   LF +  + LL
Sbjct: 293 --SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILL 350

Query: 353 MIKKK 357
              ++
Sbjct: 351 RYSRR 355


>gi|332086995|gb|EGI92129.1| hypothetical protein SB359474_4824 [Shigella boydii 3594-74]
          Length = 360

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 125/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P      +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|189501496|ref|YP_001957213.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496937|gb|ACE05484.1| permease YjgP/YjgQ family protein [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 357

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 131/362 (36%), Gaps = 10/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    SFL     I+ I  +I I ++         S   +       +P +
Sbjct: 1   MKLLDRYILKKFLFSFLFILCLIILIITLIDITEKNEYFIRHKLSFREIADYYYNFLPFM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             MV+P    + T  V + + + TE++ I + G S +  + P L  A  L+IF F+    
Sbjct: 61  TNMVSPITIFITTIFVTSRLAQRTEIIAILSGGVSFVRFLVPYLIGATFLAIFNFMLIGW 120

Query: 121 IEPKCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYIKIS-KYNPNNTLQGIFIVDS 178
           I        K+++ + +     +     N+  +L  D Y+ +    + N     + +   
Sbjct: 121 ILADANK--KRVAFEIEYVDSPYRSSSRNIHIKLSTDTYLYVGYYRSYNGLGTDVTLETI 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           RD +  +   A++     +     L D    +   + + I+  K    TL     +    
Sbjct: 179 RDNRLMEKISAKAIRWVEESGQWQLKDWICRKIDGLDEHITSGKAMDLTLNL---HPEDF 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLET---YRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +      +  L   + +    R +  +    + +E + R       +I  L+ +V + +
Sbjct: 236 SINPKLHEMLTLTELDKHIQKLREKGTDNLNFFLTEKYVRYMSPFAAIILTLMGVVVSAR 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++      +I   FI   I    F       +    N      +   +F I ++ L  + 
Sbjct: 296 KSRGGVGLQIALGFILALIYIAFFLFARGAANVKGNNLLLTIWMPNIVFSIITLILYKLT 355

Query: 356 KK 357
            K
Sbjct: 356 PK 357


>gi|16763280|ref|NP_458897.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144759|ref|NP_808101.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213162831|ref|ZP_03348541.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427634|ref|ZP_03360384.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213618568|ref|ZP_03372394.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650367|ref|ZP_03380420.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824527|ref|ZP_06544086.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25513067|pir||AG1061 probable inner membrane protein STY4818 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505588|emb|CAD06940.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140398|gb|AAO71961.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 360

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 124/363 (34%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D + +   L+   E   ++P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                          IS    F V       +  +   P  +  L            LM+
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLML 357

Query: 355 KKK 357
           +K 
Sbjct: 358 RKS 360


>gi|254507394|ref|ZP_05119529.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
 gi|219549650|gb|EED26640.1| permease YjgP/YjgQ [Vibrio parahaemolyticus 16]
          Length = 356

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 143/360 (39%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  M    ++ ++ +I+ ++++  V   +  L          IP  +
Sbjct: 3   KILDLYIGRTIIATTSMVLATLIGLSSIIRFVEQLRSVGKGSYDLLNAFYFVLLGIPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       +     L  +  ++EL+++  +G S++ +   VL  AI L + + +     
Sbjct: 63  ELFFAMSALLGALIGLGILASSSELVVMQASGYSKLDIGLSVLKTAIPLMLIIMLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+ +   ++L + +        +   ++ R  DD +I I K   + TL G+ +     +
Sbjct: 123 APQAQKMARELRSFSISGGQIVSVRAGVWARDVDD-FIFIGKVEDD-TLYGVKVWRFDDE 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + +++ +A       D Q  ++ + E+   +    +++  K K Y  +T        V+
Sbjct: 181 KKLYQVMFAPEADYLGDNQ-WLMKNAEITDMA-DKVELAKSKVKEYAWKTTLVPDKLAVV 238

Query: 241 K--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
           K    +  +S L +          +    Y     +++TQ +   +  L++   V    R
Sbjct: 239 KVEPEELAMSGLYD-YVTYLKASEQDASRYELALWRKVTQPISIAVMMLLALSFVFGPLR 297

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++    + +  +    +      F+G   +++ I   P    ++   +F   ++ LL  K
Sbjct: 298 SVSMGARVLSGVVAGFTFYISSEFFGPLTLVYGIP--PAVGAVMPSLVFLTLALMLLRRK 355


>gi|161829745|ref|YP_001596892.1| putative permease [Coxiella burnetii RSA 331]
 gi|161761612|gb|ABX77254.1| putative permease [Coxiella burnetii RSA 331]
          Length = 370

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 120/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I     P +L  + 
Sbjct: 5   RYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQAPLLLGYLL 64

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 65  PLGLFLGGLLALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 124

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 125 QWYRVKILKDAVATASLEKIVPGRFQLLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 184

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 185 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 243

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 244 ITERVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVPLSEANP 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 296 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 322


>gi|325279695|ref|YP_004252237.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324311504|gb|ADY32057.1| permease YjgP/YjgQ family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 359

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 135/368 (36%), Gaps = 20/368 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           MK  +LYI+R    +F  S + I+ I  V  + +++     +   +  I+       IP 
Sbjct: 1   MKKLDLYIIRKFLGTFFFSLVLILCIVVVFDLSEKLEKFLENEAPVKAIVFDYYKNFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + M  ++E++ I +TG S    + P L  A +++I  F+   
Sbjct: 61  FANVFSSLFTFISVIFFTSKMAYDSEIIAILSTGISFRRFLFPYLMSATVIAILSFLLGA 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
            I P       +   +       +  E+N+  ++    YI +S Y+  +N      I + 
Sbjct: 121 FIIPNANEKRIEFEKQYMGKRYANK-EQNIHRQIAPGTYIYMSSYSVASNVGYDFSIENF 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R         +   + D + +  ++++ ++       +  +  +     +  + +  S  
Sbjct: 180 RGDTLVNKLTSSRITWDKENKKWVIHNWKLREIEGDKETYTTGQKLDTVMAFQPSEFSEN 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIFGLISIVAA 293
             K  +Q    L  P  +    R ++  +     ++ E +K +       I   I +   
Sbjct: 240 PKKIREQ----LTFPELDRYIDRMKMRGSSNVIEFQIEKYKMIANAFATFILTFIGVS-- 293

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSI 349
                +R    +H + I L ISF  +  F         N    P+L ++    LF I  +
Sbjct: 294 ISSRKIRGGMGLH-LGIGLLISFS-YILFMQFSTVFATNGNMNPLLAVWLPNILFAIIGV 351

Query: 350 FLLMIKKK 357
           F+     K
Sbjct: 352 FVYRTAPK 359


>gi|322834555|ref|YP_004214582.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
 gi|321169756|gb|ADW75455.1| permease YjgP/YjgQ family protein [Rahnella sp. Y9602]
          Length = 356

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 128/361 (35%), Gaps = 13/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSAAGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+     +   A+     +    +  ++ +   D +I I +      L G+ I   + +
Sbjct: 123 APQGEQMARNYRAQQMYGGSLLSTQNGVWAKDGHD-FIYIERVAGEKELTGVNIYHFNEE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT----LQTESANSS 236
            +   + YA S + D     +   D     +S ++  + I   ++ T             
Sbjct: 182 NKLQSVRYASSATFDNGEWKLSQVD-----ESDLTDQLQITGSQTLTGVWKTNLTPDKLG 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +  + Y+     ++   L   +  L+++      
Sbjct: 237 VVALDPDALSISGLHN-YVKYLKQSGQEAKRYQLNMWSKIFSPLSVAVMMLMALSFIFGP 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
                        I     F V       +  +    P    +L   LF + S+FLL+ K
Sbjct: 296 LRSVPMGVRVVTGICFGFLFYVLDQIFGPLSLVYSIPPILGALLPSGLFFVISMFLLLKK 355

Query: 356 K 356
           +
Sbjct: 356 R 356


>gi|327481778|gb|AEA85088.1| permease [Pseudomonas stutzeri DSM 4166]
          Length = 353

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 124/359 (34%), Gaps = 10/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  + L     IV +A +   +  +  V      L   L+      P  
Sbjct: 1   MVKLDRYIGIHVFLAILTVLGIIVGLALLFAFIDELGDV-QGNYGLGDALQYVLLTSPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L ++  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVLSVMKPMLVLLVAGILIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P      +   + AQ A      +  L+    ++ ++ ++   P   L G+       
Sbjct: 120 VAPLTEDIAQARRSLAQGAGEAQSSKRGLW-HRQENEFVHVNAVQPGGVLVGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +     +A+  S   D     L +           +++    + + +Q       T+V
Sbjct: 179 ERRLLSSSFARRASYQGDH--WRLENIATTHFRGDHTEVARAPEERWDVQLTPQLLGTVV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           ++    +++ L     +    +      Y   F  ++ Q    V   L++I        +
Sbjct: 237 MEPEALSITGL-WRYIHYLGEQGLNNSRYWLAFWTKVLQPAVTVALVLLAISFIFGP--L 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKK 357
           R       IF  + + F VF     ++    Q   + P+L +    C+ ++    + ++
Sbjct: 294 RSVTLGQRIFTGVVVGF-VFRIIQDLLGPASQVFGFSPLLAVVLPACVCALIGAWLLRR 351


>gi|254481253|ref|ZP_05094498.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
 gi|214038416|gb|EEB79078.1| putative permease, YjgP/YjgQ family [marine gamma proteobacterium
           HTCC2148]
          Length = 353

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 114/359 (31%), Gaps = 9/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + ++   +  + L+    IV +  +   +   + + S T +   +       +P  
Sbjct: 1   MRKLDRHVGWTVFVAILLVLAIIVGLDAIAAFIDEADDI-SKTYTFGQVGLYILLTLPGR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF   +     L  +  ++EL+++   G S   L+   +  A+L++I  F     
Sbjct: 60  LYEFIPFAALIGCMLGLGQLATSSELVVMRAAGVSTGRLVWVAMKPALLIAIMGFSLGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P+     +   A AQ           ++ R + + ++  +       + GI  +    
Sbjct: 120 VAPETEQMAETQRALAQNPGESFGGRYGIWNR-EGNTFLHFNAVEAGGVVHGITMLEFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D        A+  S +       + D  +   S         +   +         + + 
Sbjct: 179 DLLMEYSLRARRASFEGG--YWTMEDAVLTNFSSWQTTRETHEVMRWDTGITPELLTVMA 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF--PVIFGLISIVAADKRA 297
           ++     +S L          +    + Y+     ++ Q      ++   IS +    R 
Sbjct: 237 VEPEYLPISDLYR-FSRYLQSQGLDSDDYQLALWGKILQPAAIGALVLVAISFIFGPLRE 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                +    + + +             +      P Y  ++ + L   + + LL+  +
Sbjct: 296 GTMGFRIFAGVIVGIVFRTSQDLLGPASL-VFGFAPIYAALVPILLCGAAGMLLLLRAR 353


>gi|317046772|ref|YP_004114420.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
 gi|316948389|gb|ADU67864.1| permease YjgP/YjgQ family protein [Pantoea sp. At-9b]
          Length = 358

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 125/362 (34%), Gaps = 12/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI + I  + +M+   +V ++ +I+ + ++        +       +   +P  +
Sbjct: 3   KVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKTGQGAYTALDAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGNLAQRSELVVMQASGFTRMQVALAVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   A+          +  L+ + D + +I I +   +N + G+ I +  + 
Sbjct: 123 APQGEQMARNYRAQQLYGGALVSTQNGLWAK-DGNSFIYIERIKGDNQIDGVSIYNFSEQ 181

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-----SYTLQTESANS 235
           +      YA + + D  ++  +L+           KD   +         +         
Sbjct: 182 RRLLSVRYAATATWDNAKKLWVLS----QVDESDLKDAKQITGSQSLSGEWKTNLTPDKL 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             + L  +  ++  L N +        +    Y+     ++ Q L   +  L+++     
Sbjct: 238 GVVALDPDALSIRGLYNYSK-YLKQSGQEAGRYQLNMWSKIFQPLSVAVMMLMALSFIFG 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                         IS    F V       +  +   P  +  +       +    LM+K
Sbjct: 297 PLRSVSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGIPPILGAVLPSAAFFAISLFLMLK 356

Query: 356 KK 357
           ++
Sbjct: 357 RR 358


>gi|91213818|ref|YP_543804.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
 gi|117626606|ref|YP_859929.1| hypothetical protein APECO1_2132 [Escherichia coli APEC O1]
 gi|237703938|ref|ZP_04534419.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075392|gb|ABE10273.1| hypothetical protein UTI89_C4869 [Escherichia coli UTI89]
 gi|115515730|gb|ABJ03805.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|226901850|gb|EEH88109.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 361

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|204927347|ref|ZP_03218549.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204324012|gb|EDZ09207.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 360

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 128/363 (35%), Gaps = 15/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D + +   L+   E   ++P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                          IS    F V    F  +       P    +L    F + S++L++
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVVGALLPSASFFLISLWLML 357

Query: 354 IKK 356
            K 
Sbjct: 358 RKS 360


>gi|82546485|ref|YP_410432.1| hypothetical protein SBO_4178 [Shigella boydii Sb227]
 gi|81247896|gb|ABB68604.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 361

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 125/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P      +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWVAPLGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|158425948|ref|YP_001527240.1| permease precursor [Azorhizobium caulinodans ORS 571]
 gi|158332837|dbj|BAF90322.1| permease precursor [Azorhizobium caulinodans ORS 571]
          Length = 363

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 119/369 (32%), Gaps = 39/369 (10%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
           ++   Y  R    S  M     V +  ++  L+     +   T S   +  ++ Y  P  
Sbjct: 4   RTLGFYFARRFFASVTMIFFSCVGLIMLVDFLEMARRTADRDTVSAVTVALLTIYRTPAF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF           +++R  EL++    G S      P L +A L+ +F     N 
Sbjct: 64  TEQLLPFAVLFGGMATFVTLSRKLELVVARAVGLSVWQFTSPALLVAFLIGVFATCVFNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN------------PNN 168
           +    +    ++ A+     +       +F +     +I+    +               
Sbjct: 124 VSADFKERANRMEAEIFNTAS------GVFTQGTSGFWIRQQSVDGQAIIQAAASQQGGR 177

Query: 169 TLQGIFIVD-SRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKF 223
            L G+ + +  R+ +      A+S  +       ++A +L  G   +            F
Sbjct: 178 QLTGVTVFEFDRNGKLTDRVEAKSAILGDGYWTMKEARVLVPGSDQQ-----------TF 226

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFP 282
           ++Y L T+           + + +SF   P+  +N          YR +    L +    
Sbjct: 227 ETYLLATKLDPKQIQESLVSPETVSFWQLPDAISNAEQSGFGAARYRLQLQSLLARPFLL 286

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           V   LI+ V      + R       I   +   F ++ G   +   +       PI   +
Sbjct: 287 VAMVLIAAVVGL--RVFRFGGVGQTILGGVLAGFLLYLGTK-LAEDLGDAGVVHPIAAAW 343

Query: 343 LFCISSIFL 351
              ++ IF+
Sbjct: 344 FPALAGIFM 352


>gi|255691880|ref|ZP_05415555.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260622433|gb|EEX45304.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 365

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 131/364 (35%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F+  +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +   T   ++      +D  +   I  YN        F +
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNTARNVQ----LEVDSGVIAYIDNYNNAMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  +     + + I+        +  E ++
Sbjct: 183 DKFVDKKLVSHLTARRVTYDTTTVHKWTIHDYMIRELDGLKEKITKGDRIDSIINMEPSD 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +  +        L +            ++ +  E+HKR+       I  +I +    
Sbjct: 243 FLIMKNQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVS-LS 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
            R           I + LS S   +  F  I      N    P++ +++     + I   
Sbjct: 302 SRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFF 358

Query: 353 MIKK 356
           + +K
Sbjct: 359 LYQK 362


>gi|309784105|ref|ZP_07678747.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308928098|gb|EFP73563.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 360

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
               P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|297624270|ref|YP_003705704.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297165450|gb|ADI15161.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 353

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 118/347 (34%), Gaps = 22/347 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+LR     +L+       +  +  +      +     +L ++ ++  Y +P  L 
Sbjct: 5   RLAGYLLRETAGLYLLGVAAFCLLLSIDTLTVWAGYLIQQNATLGVIARLMLYQLPLFLH 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P             + +++EL      G   ++L+ P+L   +L+S+   ++   +E
Sbjct: 65  LSLPVAAVFAVLLATGRLAKDSELKAAYALGVPPLSLLWPLLGFGVLISVAALLNNGYLE 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN------TLQGIFIV 176
           P+ +    +L A    A   +  + ++ FR +  LY   ++   +        L G+ + 
Sbjct: 125 PRGQIAEDELVASFFNARPSAETQRDVSFRQEGGLY-YAARIRADTFDRTRAELSGVLVY 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                    +Y A  G+ D +     L + EV R+    +    +     TL       +
Sbjct: 184 ----GDDGTLYSAPYGTWDSEVNTWTLEEVEVLREGEAPRLEPTL-----TLPFTLQADA 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              L A +      L           + +       H+RL      VIF LI+       
Sbjct: 235 GASLSAAENLTLSELYARIEAGRRAGQSVRGDLFNLHRRLADASSAVIFVLIA---GALG 291

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             +R R       I L + F   W    +     +     P++  +L
Sbjct: 292 LHLRGRSAGFGWTIVLLVCFFALW---TLSESFFEQGVLSPVVAAWL 335


>gi|150005671|ref|YP_001300415.1| hypothetical protein BVU_3161 [Bacteroides vulgatus ATCC 8482]
 gi|212693333|ref|ZP_03301461.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
 gi|254884104|ref|ZP_05256814.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|265753721|ref|ZP_06089076.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776587|ref|ZP_06742057.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|319640869|ref|ZP_07995580.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
 gi|149934095|gb|ABR40793.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|212664098|gb|EEB24670.1| hypothetical protein BACDOR_02845 [Bacteroides dorei DSM 17855]
 gi|254836897|gb|EET17206.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|263235435|gb|EEZ20959.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449575|gb|EFG18105.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|317387506|gb|EFV68374.1| hypothetical protein HMPREF9011_01177 [Bacteroides sp. 3_1_40A]
          Length = 390

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 130/346 (37%), Gaps = 10/346 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 33  KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 93  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+  N+   +D  +   I +Y   N     F +D  D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVR-NVQLEVDSGVIAYIERYENYNKTGYRFSLDKFD 211

Query: 181 TQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +    +  A+S + D            + R+    ++  I +        +      ++
Sbjct: 212 DKKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMRE-KITRGDRLDTIIKMEPQDFLI 270

Query: 240 LKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +K   Q ++   L              ++ +  E+++R+       I   I +  + ++ 
Sbjct: 271 MKGQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKM 330

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              +      + + L++SF  +  F  +      N    PI+ +++
Sbjct: 331 ---KGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWI 372


>gi|303237034|ref|ZP_07323604.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
 gi|302482421|gb|EFL45446.1| permease, YjgP/YjgQ family [Prevotella disiens FB035-09AN]
          Length = 408

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 129/363 (35%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              + YI++    +++ S + I+ IA V    + ++  +        I+       IP  
Sbjct: 49  GLLDWYIIKKFIGTYIFSIVLIISIAIVFDFNENLSKFTQYHAPWRAIIFDNYANFIPYY 108

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  ++E++ +   G S   L++P +   IL++   +   + 
Sbjct: 109 SNLFSPLFVFIAVIFFTSKLAGDSEIISMLAAGISFNRLMRPYMISCILIAGVTYYLNSS 168

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +  +A  +     +   EN+  ++  +    I  Y+        F +D  +
Sbjct: 169 VIPHGTVIRQNFNALYRNDKKNTT-GENIQLKVAKNTVAYIQHYDNTYKRGYGFSLDRFE 227

Query: 181 TQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +    +   +     +I   +    + + ++ +   + + I+        +  E  +  
Sbjct: 228 GKKLVDHLTATEIQYDTIADSKFHWKVTNWKIRKLKGLKEHITTGAEMDTVILMEPTDLI 287

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +  +   S LL+      +   + +  Y  EFHKR+       I  +I +      
Sbjct: 288 YFDGQQEEFTSSQLLDYISKQTSRGSKNVIQYEVEFHKRIAMSFSSFILTIIGLSL---- 343

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLFLFCISSIFLLM 353
              R+RK    +++ + ++  V +     I     I  N   +   ++     ++I    
Sbjct: 344 -SSRKRKGGMGMYLGIGLALSVSYILLQAISSTFAINTNASPMLAAWIPNIIFAAIAYFC 402

Query: 354 IKK 356
            +K
Sbjct: 403 YRK 405


>gi|16767725|ref|NP_463340.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56416251|ref|YP_153326.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161617774|ref|YP_001591739.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551264|ref|ZP_02345019.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167991269|ref|ZP_02572368.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232820|ref|ZP_02657878.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168234610|ref|ZP_02659668.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244031|ref|ZP_02668963.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262477|ref|ZP_02684450.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168464638|ref|ZP_02698541.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821095|ref|ZP_02833095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194446562|ref|YP_002043719.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449673|ref|YP_002048503.1| hypothetical protein SeHA_C4884 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470492|ref|ZP_03076476.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738007|ref|YP_002117400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249048|ref|YP_002149399.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262055|ref|ZP_03162129.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197365174|ref|YP_002144811.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198242808|ref|YP_002218343.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388381|ref|ZP_03214993.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205355211|ref|YP_002229012.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859605|ref|YP_002246256.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238910635|ref|ZP_04654472.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16423045|gb|AAL23299.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56130508|gb|AAV80014.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161367138|gb|ABX70906.1| hypothetical protein SPAB_05637 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405225|gb|ACF65447.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407977|gb|ACF68196.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194456856|gb|EDX45695.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713509|gb|ACF92730.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195632823|gb|EDX51277.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197096651|emb|CAR62266.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212751|gb|ACH50148.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240310|gb|EDY22930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197292043|gb|EDY31393.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197937324|gb|ACH74657.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605479|gb|EDZ04024.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205274992|emb|CAR40066.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323911|gb|EDZ11750.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205330351|gb|EDZ17115.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333019|gb|EDZ19783.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337021|gb|EDZ23785.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205342262|gb|EDZ29026.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348818|gb|EDZ35449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206711408|emb|CAR35787.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261249568|emb|CBG27435.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996824|gb|ACY91709.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160964|emb|CBW20498.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915576|dbj|BAJ39550.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|322615643|gb|EFY12563.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618703|gb|EFY15592.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621884|gb|EFY18734.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627609|gb|EFY24400.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630915|gb|EFY27679.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637866|gb|EFY34567.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642324|gb|EFY38930.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643901|gb|EFY40449.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651023|gb|EFY47408.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656724|gb|EFY53012.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659852|gb|EFY56095.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661937|gb|EFY58153.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666315|gb|EFY62493.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672734|gb|EFY68845.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676164|gb|EFY72235.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680648|gb|EFY76686.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684458|gb|EFY80462.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323132817|gb|ADX20247.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323194205|gb|EFZ79402.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197350|gb|EFZ82490.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201532|gb|EFZ86596.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206046|gb|EFZ91008.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213057|gb|EFZ97859.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215428|gb|EGA00172.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219412|gb|EGA03897.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227716|gb|EGA11870.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228886|gb|EGA13015.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236502|gb|EGA20578.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239997|gb|EGA24044.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241956|gb|EGA25985.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247895|gb|EGA31832.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251467|gb|EGA35338.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258167|gb|EGA41844.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263687|gb|EGA47208.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265717|gb|EGA49213.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270161|gb|EGA53609.1| lipopolysaccharide ABC transporter permease [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326626151|gb|EGE32496.1| putative permease [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630369|gb|EGE36712.1| putative permease [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332991289|gb|AEF10272.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 360

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 124/363 (34%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D + +   L+   E   ++P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                          IS    F V       +  +   P  +  L            LM+
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLML 357

Query: 355 KKK 357
           +K 
Sbjct: 358 RKS 360


>gi|228471152|ref|ZP_04055971.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
 gi|228307092|gb|EEK16166.1| permease, YjgP/YjgQ family [Porphyromonas uenonis 60-3]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 127/354 (35%), Gaps = 27/354 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           + + + YI      ++  S + I+ +A    + ++++ +      L  I+       +P 
Sbjct: 6   ISTVDRYIFIQFLATYFFSIVLILAVAIAFDVTEKLDRLLQPDVPLRAIIWDYYANFVPY 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  +
Sbjct: 66  YANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILTFLLSS 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFF-------RLDDDLYIKISKYNPNNTLQG 172
            + P             ++     Y+++           ++  + ++ +S YN  + +  
Sbjct: 126 FVIPPGNR--------VRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGY 177

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-- 230
            F +D  + +  K     +  I        L D  +         +    F+   L T  
Sbjct: 178 TFSMDRFEGKDLKSRVMANSIIYDTLYNWQLQDYTITYFGERQDTL----FRGNQLDTII 233

Query: 231 -ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             +     +     +   +  L  +      R    + Y  E HKR+       I  L+ 
Sbjct: 234 PITPRDFLVTEGDVEMLTTPELYHSIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMG 293

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  + ++   R+      + + LS+SF ++  F  +           P++  +L
Sbjct: 294 VSLSARK---RKGGMGLALAVGLSLSF-IYILFMTVTASFAVTGAMAPVVAAWL 343


>gi|153209377|ref|ZP_01947372.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|165919052|ref|ZP_02219138.1| putative permease [Coxiella burnetii RSA 334]
 gi|212218294|ref|YP_002305081.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
 gi|120575377|gb|EAX32001.1| putative permease [Coxiella burnetii 'MSU Goat Q177']
 gi|165917247|gb|EDR35851.1| putative permease [Coxiella burnetii RSA 334]
 gi|212012556|gb|ACJ19936.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuK_Q154]
          Length = 355

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ + S    L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGSVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FIVD 177
           I P+  ++ ++    A           +++       +I I   +  N +  +   FI  
Sbjct: 121 IAPQLGASGEETKLTALSKAVGYKALGDVWLHGAQ-SFIHIGSVDAKNKISEVSQFFI-- 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
           +   Q     YA  G         IL + +  + +P  + +  I KF   T+     +  
Sbjct: 178 NNKHQLLSAVYAPKGEYVKGH--WILYNVKQTQFTPNRTTEKKIAKFP-LTIVFNPDHLQ 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 + Q++  L +               Y   F +R  Q L  V+   + +      
Sbjct: 235 QGRKMVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG- 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +RQ      I   + I F  +     F       +  P +  ++   LF +  + LL 
Sbjct: 293 -SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLR 351

Query: 354 IKKK 357
             ++
Sbjct: 352 YSRR 355


>gi|319788013|ref|YP_004147488.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466525|gb|ADV28257.1| permease YjgP/YjgQ family protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 366

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 121/372 (32%), Gaps = 25/372 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  +LYI R +  S L++   +V +  V+ +  ++  +   +      L +  Y +P  
Sbjct: 5   IRLHDLYIGRVVLASVLLTWAVLVGLDVVLALSGQLGDLGKGSYDFPTALAVVAYSVPRR 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P+   + +   L  +   +EL  +   G SR  L   V    +LL+  + ++   
Sbjct: 65  AYTIFPYAAVIGSLLGLGQLAGTSELTALRALGLSRRRLSISVAAALVLLTGLMVVTGET 124

Query: 121 IEPKCRSTIKQLSAKAQLALTF------SYLEEN-LFFRLDDDLYIKISKYNPNN----T 169
           + P  +    QL   A+            +  E   F    D       +          
Sbjct: 125 LAPWGQRQADQLKLAAKNNNVAMARYSGLWAREGDTFLNAIDG-----QERVEGGQRVLE 179

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           L+ + + +  +    +    ++G +  D     L D      +         + + +  +
Sbjct: 180 LRDVRLYEVGEEGEVRSLT-RAGLVVHDANGWQLRDVRRVAFTGAGAVEETAEEQKWDSE 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            ++   +  V +  + + S L      +  YR       R       ++W +P+    + 
Sbjct: 239 LDANALAAGVTRPRNLSASDL----QASIEYRRRNGLDARDYEDTYWSRWFYPLNVLALC 294

Query: 290 IVAAD-KRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFC 345
           + A       +R       +F+ +  + G       F  +      +      L   L  
Sbjct: 295 LAAVPFAFGSLRSGGMGKRLFLGIVFALGFMLLQMQFGRLAGAFRFDYRIAYALPPVLML 354

Query: 346 ISSIFLLMIKKK 357
            +S FL   K  
Sbjct: 355 ATSWFLFRRKSG 366


>gi|123440875|ref|YP_001004866.1| hypothetical protein YE0502 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087836|emb|CAL10622.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 356

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 122/358 (34%), Gaps = 6/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+   +V ++ +I+ + ++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTLLSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSR 179
            P+     +   A+     +    +  L+ +   D +I I + + +  L G+ I   D +
Sbjct: 123 APQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD-FIYIQRVSGDKELTGVNIYHFDQQ 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +   + YA + + + +   +   D E    +P     S      +           + 
Sbjct: 182 D-RLLSVRYAATATFEDNLWRLSQVD-ESDLSNPNKVTGSQTLTGEWKTNLTPEKLGVVA 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +  +  ++S L +          +    Y      ++       +  L+++         
Sbjct: 240 MNPDSLSISGL-HDYSKYLRQSGQESSRYELNMWGKIFAPFSVAVMMLMALSFIFGPLRS 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     I     F V       +  +   P  I  L   +  +     L++K++
Sbjct: 299 VPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYSIPPVIGALLPSILFLLISVYLLLKRR 356


>gi|299530037|ref|ZP_07043464.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
 gi|298722017|gb|EFI62947.1| permease YjgP/YjgQ [Comamonas testosteroni S44]
          Length = 367

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 127/373 (34%), Gaps = 22/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLVLGMSFVVLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSA----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           + I P   +  ++L      +     T ++L+E         + I +           + 
Sbjct: 121 DYIAPAADNFSQKLRVVAKGQISRGATGAWLKEKQGNHS---VAINVGAVKAPGDFVNVR 177

Query: 175 IVD-SRDTQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKS--YTLQ 229
           I +     +      AQS  +D D++   L    G    +      +S +   S  +  +
Sbjct: 178 IFEFDSKGRIAAQINAQSAQVDEDKELWTLKGVQGSKVAQEGDVTKLSRISEASMNWPTK 237

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             +A  S  +LK  D+  +  L     +     +  + Y  EF +++   L  ++  +++
Sbjct: 238 VTAAMVSGALLKP-DRMTTIALFQFVRHLQDNGQAAQKYEIEFWRKVFYPLSCLVMVVLA 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCI 346
           +  A      R       +F  +      F     F YI       P+        L+  
Sbjct: 297 LPFA--YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTA 354

Query: 347 SSI--FLLMIKKK 357
            S+  F  ++ ++
Sbjct: 355 LSLSAFGWLVLRR 367


>gi|300774823|ref|ZP_07084686.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
 gi|300506638|gb|EFK37773.1| YjgP/YjgQ family permease [Chryseobacterium gleum ATCC 35910]
          Length = 370

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 128/382 (33%), Gaps = 41/382 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE------SLNILLKISG 54
           +K  + YI++    +F    + +  +  VI + Q+I  + ++         +  L+    
Sbjct: 2   LKIVDRYIIKKYLGTFSFMLVLLSIVVLVIDVQQKIPRIENAKAIDPKLDLMYFLIHFYP 61

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           + I  ++         +      + M  NTE++ I ++G S     KP L  +I + +  
Sbjct: 62  FWIINLVVTFLSILVFISVIYFTSRMANNTEIVAIISSGASFHRFSKPYLVTSIFIGLIA 121

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLYIKISKYNPNN 168
            +  +++ P       +L A        +  +E +        +L    YI I  +N   
Sbjct: 122 LVVYHMVLPWANIKKNELEAYTYN----AANKEKILGTAPASSQLSKTEYIFIDSWNKRE 177

Query: 169 TLQGIFIVDSRDTQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
                F+    D      Y   A     D  ++  +LN+      +  + +         
Sbjct: 178 KRGSSFVYQKYDKDRKMTYELKASEVYWDKAKKQFVLNNYLEKTINKDNSE--------- 228

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP----------ELLETYRSEFHKRL 276
            L               +   + LL  N   P                L +Y +E H+R 
Sbjct: 229 KLNNGIELRKNYGHSPEELFPNELLGQNKTTPELLKFIEREKARGNSNLNSYLNELHQRT 288

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI-IHKIEQNPYY 335
           +  +  +I   +++      +  ++      + I +S++F   + F  + +    ++   
Sbjct: 289 SMPVSIIILTFLALS---LSSQKKRGGLGINLAIGISLAFIFVFSFEALKVVSENKSLSP 345

Query: 336 IPILYLFLFCISSIFLLMIKKK 357
              ++L       + L +  K+
Sbjct: 346 ALAMWLPNLVFLPLTLYLYIKR 367


>gi|255013990|ref|ZP_05286116.1| hypothetical protein B2_08777 [Bacteroides sp. 2_1_7]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 126/360 (35%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P    T      K        Y++      ++  +      Y+  + +   F +   
Sbjct: 125 YIIPPANETRIDFQNKYIRNKKVDYVKNAQ-LEIEPGVIAYFDSYDARSNMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A+S   D   Q   + D  +     + + I+    K  TL    ++    
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQ-WTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V          L              ++T++ E+HKR    +   I   I   +   R +
Sbjct: 243 VNDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIG-ASLSSRKI 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                    I ++LS S   +  F  +      N Y  P +  ++     + I + + +K
Sbjct: 302 KGGMGMNIGIGLALSFS---YILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLYQK 358


>gi|209921759|ref|YP_002295843.1| hypothetical protein ECSE_4568 [Escherichia coli SE11]
 gi|209915018|dbj|BAG80092.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 360

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +    GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEEFGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|307718797|ref|YP_003874329.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6192]
 gi|306532522|gb|ADN02056.1| permease YjgP/YjgQ family protein [Spirochaeta thermophila DSM
           6192]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    + L      FL + L  V I  +I +   +     +  +   +L +    +P  
Sbjct: 1   MRVITRFALSWFLPLFLAALLSFVTILELIDLFTNLVAYIDADLTTFQILHLQLLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          L S++ + EL+ +   G S    + P +   +L S   F  E +
Sbjct: 61  VTYSLPIATLFAVAFSLGSLHASNELIALFGAGISLYRFVLPFVVCGLLFSGAYFFIEEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           +     +  ++L A      + + +        ++ L +   +Y+  ++T+  + + +  
Sbjct: 121 LAIPSLTQKQELMAILMGRTSPTQVVNVTLVGEENRLVVHTRRYDDRSHTITRVLVYEKD 180

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +         A+ G+ D D++  +L     + +     ++    F+              
Sbjct: 181 EEGEFASRIEAERGTWDPDQREWVLQRVRRYIRDEE-GNLKEESFEKLRTDLGEIQPEDF 239

Query: 239 --VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                + D+                        ++++KR++      I  L++   A + 
Sbjct: 240 LQTRHSIDKMTLAEAGRWIQTLKRAGLPYREALTDYYKRISFAFTSFIVALLATSVAGRF 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                   +          +      +         P     L + +F   SI   
Sbjct: 300 KANALLLSLLLSLSIGVSYYVFQMVTTLFAKLGYLPPVVGAWLPVLVFFSGSILFF 355


>gi|262382043|ref|ZP_06075181.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297220|gb|EEY85150.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 126/360 (35%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P    T      K        Y++      ++  +      Y+  + +   F +   
Sbjct: 125 YIIPPANETRIDFQNKYIRNKKVDYVKNAQ-LEIEPGIIAYFDSYDARSNMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A+S   D   Q   + D  +     + + I+    K  TL    ++    
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQ-WTVIDYMIRDFDGMREHITEGSRKDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V          L              ++T++ E+HKR    +   I   I   +   R +
Sbjct: 243 VNDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIG-ASLSSRKI 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                    I ++LS S   +  F  +      N Y  P +  ++     + I + + +K
Sbjct: 302 KGGMGMNIGIGLALSFS---YILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLYQK 358


>gi|254294287|ref|YP_003060310.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
 gi|254042818|gb|ACT59613.1| permease YjgP/YjgQ family protein [Hirschia baltica ATCC 49814]
          Length = 368

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 113/332 (34%), Gaps = 23/332 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
              + YI        LM+   I+    ++ +++++  V + T  SL    +++    P +
Sbjct: 4   SRIQTYIFWECVAGLLMTLGIILGAILLVDMVEQLRTVGARTELSLLGAFQLTALKAPQL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + +    + +NR++EL  I  +G S    + P  FLA  L        + 
Sbjct: 64  ILETMPFAILVGSMLAYSKLNRSSELSAIRASGVSAWRFLAPTFFLAAFLGCIAMTIIDP 123

Query: 121 IEPKCRSTIKQLSAKAQLA----LTFSYLEENLFFRLDDDLY--IKISKYNP--NNTLQG 172
           +     +  +                +  ++ ++ R   D    +   +  P  N++LQ 
Sbjct: 124 LATFSNAKYETEKTLLLDDTGAVKDSAKRQKKVWLRQGTDTTQSVIHGEVLPNDNSSLQN 183

Query: 173 IFIV----DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           + I     D  + +  +   A+  ++      +      V   S  ++ I         L
Sbjct: 184 VEIFILEKDGDEFEFQRRIDAKKATLRPGFWQLE----GVTEYSSDNEPIKQ---DYLAL 236

Query: 229 QTESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
            T    S+ +    +++++SF   P    +        + Y  + H  L   +      L
Sbjct: 237 TTTLDPSTILDRGTDEKSISFWKLPQLIQDARRAGLDADKYILKLHTLLAMPVLLGAMAL 296

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
           I  V      L R       +   +   F +F
Sbjct: 297 IGAVVCL--RLRRSGGVTQLLAAGIGAGFLLF 326


>gi|264678997|ref|YP_003278904.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
 gi|262209510|gb|ACY33608.1| permease YjgP/YjgQ [Comamonas testosteroni CNB-2]
          Length = 367

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 134/378 (35%), Gaps = 32/378 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVALSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSA----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           + I P   +  ++L      +     T ++L+E    + D  + I +           + 
Sbjct: 121 DYIAPAADNFSQKLRVVSKGQISRGATGAWLKEK---QGDHSVAINVGAVKSPGDFVNVR 177

Query: 175 IVD-SRDTQTHKIYYAQSGSIDLDRQAIIL---------NDGEVHRKSPISKDISIMKFK 224
           I +     +      AQS  +D DR+   L          DG+V + SPIS+        
Sbjct: 178 IFEFDSKGRIAAQINAQSAQVDEDREQWTLQGVQGSKVAQDGDVTKLSPISEASM----- 232

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           ++  +  +A  S  +LK  D+  +  L     +     +  + Y  EF +++   L  ++
Sbjct: 233 NWPTKVTAAMVSGALLKP-DRMTTIALFQFIRHLQDNGQAAQKYEIEFWRKVFYPLSCLV 291

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYL 341
             ++++  A      R       +F  +      F     F YI       P+       
Sbjct: 292 MVVLALPFA--YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPG 349

Query: 342 FLFCISSI--FLLMIKKK 357
            L+   S+  F  ++ ++
Sbjct: 350 LLYTALSLSAFGWLVLRR 367


>gi|82779328|ref|YP_405677.1| hypothetical protein SDY_4286 [Shigella dysenteriae Sd197]
 gi|81243476|gb|ABB64186.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 361

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
               P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWAAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|119503286|ref|ZP_01625370.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
           HTCC2080]
 gi|119460932|gb|EAW42023.1| hypothetical protein MGP2080_11498 [marine gamma proteobacterium
           HTCC2080]
          Length = 353

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 102/319 (31%), Gaps = 8/319 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+   +  + +     +V +  +  ++  ++ +S         L    + +P  
Sbjct: 1   MGRFDRYLAGNVLGATVGVLAVLVGLDALSSVIDELDDLSPD-YGFTDALIYVAFTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF   +     L  +   +EL ++   G S   L    L  A+LL++  F+    
Sbjct: 60  LHEYVPFAALIGALVGLGRLAATSELTVVRAAGRSLPQLALGTLRPALLLAVLGFLVGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P          A AQ + +       ++ R D D +I +S       + G+  +    
Sbjct: 120 VSPVAEQFAVSHKALAQGSQSSFTGRGGVWNR-DGDTFIHVSAVERGGIIHGVQLLTFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +  +   A+ G+    +   +L        +        +  + +  +      +   
Sbjct: 179 ERRLTRSLRAERGTYQGGQ--WLLEKVSRTELTQDRAVTDALIQQVWETEVTPQLLALEA 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP--VIFGLISIVAADKRA 297
           +  +      L  P       +  +       F +++ Q      ++   +S +    R 
Sbjct: 237 VALDSLPTLEL-WPYAQYLRKQGLMYRDVELAFWRKVLQPFAVAGLVLVAMSFIFGPLRE 295

Query: 298 LVRQRKKIHPIFISLSISF 316
                +    + I +    
Sbjct: 296 GSLGARIFTGVIIGVVFRI 314


>gi|332976302|gb|EGK13159.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
          Length = 467

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 75/178 (42%), Gaps = 2/178 (1%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           + R +  +  +   F++ +    ++++   + +     + +L  I GY +P  L +V P 
Sbjct: 1   MTRQVASTTALVLGFLLVLLLGGRMIRYFGIAAEGRLDVGLLFAIIGYNLPYFLELVLPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
            F +    V   +  + E+ +++ +G SR  L + ++   +LL +F        +P    
Sbjct: 61  SFFIGLMLVFGRLYVDQEMAVLNGSGISRGRLARLMIPFILLLFVFEAGLSLYGKPWGVR 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTH 184
             + +  +  L+  F  +    F    DD ++ +   N + T LQ + +V + D    
Sbjct: 121 NSENIWQQQSLSSAFDLIRPQTFIS-SDDYHLYVGSMNDDRTELQDVILVQTADQGIT 177



 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 26/207 (12%)

Query: 180 DTQTHKIYYAQS-----GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            ++   I  A+      GS   D   + L  G  +     S   + + F+ Y +      
Sbjct: 240 KSERDVIVLAKRAVQVAGSDTGDTTQLDLFQGRRYEVGADSLVYNQVSFERYRISINQPP 299

Query: 235 SSTIVLKA-NDQNLSFLL---------------NPNPNNPNYRPEL----LETYRSEFHK 274
              I       Q L  L                +P   +P    +     +   ++E   
Sbjct: 300 KDIITDDNVATQTLPVLWQAATGQAAPVIDLSVDPTKASPVKTQKPDAQQVIAAQAELGY 359

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           RLT     ++  ++++  A  R    +  ++ P  I  +    V       + K   +  
Sbjct: 360 RLTLPWLIILAPMLAVPLAQVRPRQGRWLRLLPAIIIYASCALVIISLKNSVTKGSVSVL 419

Query: 335 YIPILYLFLFCISSIFLLMIKKKYTKI 361
             P+  +  F + +++L    + + ++
Sbjct: 420 SYPLT-IIGFMVLALYLNWASRLHHRV 445


>gi|332160138|ref|YP_004296715.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607296|emb|CBY28794.1| putative Permease [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664368|gb|ADZ41012.1| hypothetical protein YE105_C0514 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859698|emb|CBX70034.1| lipopolysaccharide export system permease protein lptG [Yersinia
           enterocolitica W22703]
          Length = 356

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 122/358 (34%), Gaps = 6/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + LM+   +V ++ +I+ + ++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGRTILNTILMTLFMLVSLSGIIKFVDQLRKVGQGDYSAASAGMYTLLSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DSR 179
            P+     +   A+     +    +  L+ +   D +I I + + +  L G+ I   D +
Sbjct: 123 APQGEQMARNFRAQQMYGGSLLSTQSGLWAKDGSD-FIYIQRVSGDKELTGVNIYHFDKQ 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +   + YA + + + +   +   D E    +P     S      +           + 
Sbjct: 182 D-RLLSVRYAATATFEDNLWRLSQVD-ESDLSNPNKVTGSQTLTGEWKTNLTPEKLGVVA 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +  +  ++S L +          +    Y      ++       +  L+++         
Sbjct: 240 MNPDSLSISGL-HDYSKYLRQSGQESSRYELNMWGKIFAPFSVAVMMLMALSFIFGPLRS 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     I     F V       +  +   P  I  L   +  +     L++K++
Sbjct: 299 VPMGVRVVTGIFFGFVFYVLDQIFGPLSLVYNIPPVIGALLPSILFLLISVYLLLKRR 356


>gi|126664027|ref|ZP_01735021.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
 gi|126623976|gb|EAZ94670.1| hypothetical protein FBBAL38_12830 [Flavobacteria bacterium BAL38]
          Length = 474

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 17/245 (6%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
             +F    + + FI  +  I   I  ++     L  + K   +  PT++PMV P    + 
Sbjct: 1   MITFTTVFVILFFIFVLQGIWLFIAELAGKDLDLFTIFKFLTFYAPTIVPMVLPLSVLLA 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
                 S   N E   + ++G S    +K +     +L++  F   N + P  +     L
Sbjct: 61  AIMTFGSFAENYEFAAMKSSGISLQRAMKMLTITIGILALVSFFFANNVIPDAQFRFINL 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRDT---QTHKIY 187
                       + E  F  +     IK+ K   +N   L+G+ +    +      + I 
Sbjct: 121 RKDIVQQKPAMAIVEGQFNTIGTSN-IKVDKKTGDNGEFLEGVTMHVKNNNMGLGANTII 179

Query: 188 YAQSGSI----DLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYTLQTESANSS 236
            A+ G +    D +   + L DG  +        +       +   FK Y +  +    +
Sbjct: 180 KAKRGVLTSQDDSNYLQLELYDGYYYEDIHPKKYEERKRLPFTKSSFKKYVINIDLTKLN 239

Query: 237 TIVLK 241
              + 
Sbjct: 240 QSNID 244


>gi|195940456|ref|ZP_03085838.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|295097698|emb|CBK86788.1| Predicted permeases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 360

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 125/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +   + ++ I +   ++ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQN-FVYIERVKGDDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + D +   + YA S   D + +   L+   E    +P     S     ++          
Sbjct: 181 NNDRRLQSVRYAASAKFDANNKLWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  I  L L       I L M+ K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGAL-LPSASFFLISLWMLLK 358

Query: 357 K 357
           +
Sbjct: 359 R 359


>gi|220916597|ref|YP_002491901.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954451|gb|ACL64835.1| permease YjgP/YjgQ family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 360

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 119/347 (34%), Gaps = 13/347 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +   +  + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALTGVVGIYLAVDFVDNASAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  +++ 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDLVG 120

Query: 123 PKCRSTIKQLSA--KAQLALTFSYL---EENLFFRLDDDLYIK-ISKYNPNNTLQGIFIV 176
            +     ++++A   A+      +L   E   +FR  D   +  +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGE-VHRKSPISKDISIMKFKSYTLQTESANS 235
           +             +  +  D +A IL D E    +   S  +     K Y         
Sbjct: 181 EL-GEGFTLARRIDAARMHPDGRAWILEDVEDRTFRQDGSMGLERADRKRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    + L+           + +  ++ E + RL   L  +      +  A  
Sbjct: 240 AVIAGKPDQMRWNTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYPLAGI--PGALLALALA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
               R+      +  ++ ++  +FWG   +   +  +    P +  +
Sbjct: 297 LRRDRKGHLAAALLEAVGVTL-LFWGMQGVSSALGLSGRVAPWIASW 342


>gi|209363910|ref|YP_001424259.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081843|gb|ABS76872.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 372

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 121/331 (36%), Gaps = 21/331 (6%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ + I  + L + L ++ I    Q +  +N  ++   ++  +++I    +P +L  + 
Sbjct: 7   RYLCKEILGTLLATTLILLIIFMTNQFVHYLNDAAAGKITVKAVMEIMSLQVPLLLGYLL 66

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +     L  M  + E++I+   G SR  ++  ++ LA  + + +      +EPK 
Sbjct: 67  PLGLFLGGLFALGRMAVDHEMVILTACGVSRAQIVGMLIVLATFIGVIVAWLMLSVEPKM 126

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRL-DDDLYIKISKYNPNNT-LQGIFIVDSRDT-- 181
           +    ++   A    +   +    F  L  +         N ++  +  +F+  S     
Sbjct: 127 QWYRVKILKDAVATASLEKIVPGRFQPLSSNGQVFYAGGVNDHHQKMLNVFLAQSETAGG 186

Query: 182 -QTHKIYYAQSG---SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            Q   +  A      S       I+  +G  +   P      +MKF  Y ++  S     
Sbjct: 187 KQRWDLVSADQAGEYSTAKGENFILFKNGFRYVGIPGELKYDVMKFGEYGIRLTSPAM-D 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I  + +    S L + +  +            +E   R+   L   +F L+ +  ++   
Sbjct: 246 ITGRVDAMPTSKLWHLHSKDL--------KAAAELQWRIAMPLSVWLFALLIVSLSEANP 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              ++ K   +  ++ I  G +  F ++   
Sbjct: 298 ---RKGKFAQMLPAVLIYIG-YANFMFLGRT 324


>gi|330997889|ref|ZP_08321723.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
 gi|329569493|gb|EGG51263.1| permease, YjgP/YjgQ family [Paraprevotella xylaniphila YIT 11841]
          Length = 368

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 134/374 (35%), Gaps = 34/374 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   ++Y+++    ++  S   I+ IA V    + I+  +++      I+ +     +P 
Sbjct: 8   ISKLDVYLIKKFLGTYFFSIALIISIAVVFDFNENIDKFTTNHAPWKGIIFEYYANFVPY 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +  A ++++  F+   
Sbjct: 68  FSNLFSPLFVFISVIFFTSKLAENSEIIAMMAAGMSFKRLMRPYMISAAIIAVMTFLLGA 127

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +       ++     ++D  +   I  ++        F +
Sbjct: 128 YVIPKGSVTRLNFENTYKKKKRTEFAQNVQ----LQVDTGVIAFIEHFDGRTKTGYHFSL 183

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           D   + +      A S S D       L+D E +     +  +  +K     +   S   
Sbjct: 184 DKFVNKKLVSHLTAASVSYDT------LSD-ERYHWRINNYTLRELKGMREYISHGSRID 236

Query: 236 STIVLKANDQNLS-----FLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIF 285
           S I ++ +D  L+      L +P       +     +     +  E+ KR        I 
Sbjct: 237 SIIAMEPSDFLLTRNQQETLTSPELKEYIVKQRARGSGNVKPFEVEYQKRFATPFASFIL 296

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPIL--YLF 342
            +I +         R+RK    +++ + ++    +  F  +      N  + P L  +L 
Sbjct: 297 TIIGLSL-----SARKRKGGMGLYLGIGLALSASYILFQTVSSTFAINADWPPALAAWLP 351

Query: 343 LFCISSIFLLMIKK 356
               + I   + KK
Sbjct: 352 NIIFAFIAFFLYKK 365


>gi|330448736|ref|ZP_08312383.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492927|dbj|GAA06880.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 357

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 130/358 (36%), Gaps = 7/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  ++   +V ++ +I+ ++++  V   +  L   L      +P  +
Sbjct: 3   KILDWYIGRTIIATSALTLSTLVGLSAIIKYVEQLRKVGQGSYDLLKALYFVLLSMPQDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L  +  ++EL+++  +G S++ +    L  A+ + I + +     
Sbjct: 63  IMFFPMAVLLGALIGLGMLASSSELVVMQASGFSKLDIGLSTLKTAVPMMIIVVLLGQWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ--GIFIVDSR 179
            P+ +   ++  +      +    +  ++ + D+D +I + + +  N +    I+  D++
Sbjct: 123 APQAQKMAREYRSAWVYGGSVIAAQSGVWAKNDND-FIYMGRVHDLNKVDVVNIWKFDNK 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
                    A++ S D       ++D  +   +  SK   S +    +         + +
Sbjct: 182 GKLEDVT-SAKTASYDKS-TGWTMHDVTITDTAGNSKLTNSHVASMKWDTTMTPDKLAVV 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +K  +  LS L N   +      +    Y   F ++  Q     +  L+++        
Sbjct: 240 TVKPEELPLSGLYN-YVSYLKESKQDASRYELAFWRKALQPFSIAVMMLLALSFVFGPLR 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                      +    +F +       +  + + P  I  L   L  +     L+ +K
Sbjct: 299 SVTMGARVLSGVIFGFAFYISDQVFGPMILVYRLPPIIGALGPSLVFLFITIYLLRRK 356


>gi|167763060|ref|ZP_02435187.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
           43183]
 gi|167699400|gb|EDS15979.1| hypothetical protein BACSTE_01426 [Bacteroides stercoris ATCC
           43183]
          Length = 380

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 133/369 (36%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWQAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 197

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D        + D  +     + +  SI+K +          
Sbjct: 198 DKFKDKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRE--SIVKGERLDTILFMEP 255

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 256 ADFLIMKNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 315

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  I      N    P++ ++    + +   
Sbjct: 316 ----SSKKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIA 371

Query: 352 LMIKKKYTK 360
             + KK  K
Sbjct: 372 FYLYKKAPK 380


>gi|313887034|ref|ZP_07820734.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923560|gb|EFR34369.1| permease, YjgP/YjgQ family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 361

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 128/352 (36%), Gaps = 23/352 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           + + + YI      ++  S + I+ +A    + ++++ +      L  I+       +P 
Sbjct: 6   ISTVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPY 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  +
Sbjct: 66  YANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSS 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFF-------RLDDDLYIKISKYNPNNTLQG 172
            + P             ++     Y+++           ++  + ++ +S YN  + +  
Sbjct: 126 FVIPPGNR--------IRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGY 177

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F +D  + +  K     +  +        L D  +          S+++          
Sbjct: 178 TFSMDRFEGKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQD--SLLRGNQLDTIIPI 235

Query: 233 ANSSTIVLKAN-DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                +V + + +   +  L  +      R    + Y  E HKR+       I  L+ + 
Sbjct: 236 TPKDFLVTEGDVEMLTTPQLYRSIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVS 295

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
            + ++   R+      + + LS+SF ++  F  +           P++  +L
Sbjct: 296 LSARK---RKGGMGLALAVGLSLSF-LYILFMTVTSSFAVTGAMSPMVAAWL 343


>gi|329954892|ref|ZP_08295909.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
 gi|328526996|gb|EGF54007.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
          Length = 380

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 133/369 (36%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWKAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAITTFCLGS 141

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 197

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D        + D  +     + +  SI+K +          
Sbjct: 198 DKFKDKQLVSHLTARSITYDTAAVHKWKVKDYMIREMDGMRE--SIVKGERLDTILFMEP 255

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 256 ADFLIMKNQQEMLTSPQLSEYIDRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 315

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  I      N    P++ ++    + +   
Sbjct: 316 ----SSKKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPVIAVWIPNLLYAFIA 371

Query: 352 LMIKKKYTK 360
             + KK  K
Sbjct: 372 FYLYKKAPK 380


>gi|307129164|ref|YP_003881180.1| hypothetical protein Dda3937_01300 [Dickeya dadantii 3937]
 gi|306526693|gb|ADM96623.1| conserved inner membrane protein [Dickeya dadantii 3937]
          Length = 356

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 123/357 (34%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAAAVMKTAIPLVLLTMAIGEWM 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P      +   ++     +    +  L+ +  +D ++ I +    N L G+ I    + 
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQGGLWAKDGND-FVYIQRVAGENELAGVNIYHFDKQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           ++   I YA S   +     +   +    R S        +    +           + L
Sbjct: 182 SKLLSIRYAASALYENGTWKLSQVEESDLRDSKQIGGSQTVS-GEWKTNLTPDKLGVVAL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L +   N  +   +    Y+     +L   L   +  L+++          
Sbjct: 241 DPDALSIRGLFD-YINYLHQSGQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I IS    F V       +  +   P  +         +    +L++K++
Sbjct: 300 PAGVRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLLKRR 356


>gi|215489604|ref|YP_002332035.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215267676|emb|CAS12134.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 360

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 125/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +     +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMQVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++  L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSIRGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|62182906|ref|YP_219323.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130539|gb|AAX68242.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717409|gb|EFZ08980.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 360

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 123/361 (34%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAISLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYVF 180

Query: 179 RDTQT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +    + YA S   D + +   L+   E   ++P     S     ++          
Sbjct: 181 NDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  +  L            LM++K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|221066428|ref|ZP_03542533.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
 gi|220711451|gb|EED66819.1| permease YjgP/YjgQ family protein [Comamonas testosteroni KF-1]
          Length = 367

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 129/373 (34%), Gaps = 22/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS--TESLNILLKISGYLIP 58
           MK     I R + ++ L   L  + + +   ++  +  V S     +    L      IP
Sbjct: 1   MKVLRNLIYREVIQAVLYVSLAFLALFFFFDLVDEMRWVGSGNAGYTATRALLFVTLSIP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             L  + P    +    V+    +++E  I+  +G      ++ +L L +   +   +  
Sbjct: 61  GHLYELMPIAVLIGAIFVMAKFAQSSEFTIMRTSGMGPWLALRTLLILGMSFVLLTVLVG 120

Query: 119 NIIEPKCRSTIKQLSA----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF 174
           + I P   +  ++L      +     T ++L+E    + D  + I +           + 
Sbjct: 121 DYIAPAADNFSQKLRVVSKGQISRGATGAWLKEK---QGDHSVAINVGAVKSPGDFVNVR 177

Query: 175 IVD-SRDTQTHKIYYAQSGSIDLDRQAIILN--DGEVHRKSPISKDISIMKFKS--YTLQ 229
           I +     +      AQS  +D D +   L+   G    +      +S +   S  +  +
Sbjct: 178 IFEFDSKGRIAAQINAQSAQVDEDEEQWTLHGVQGSKVAQEGDVTKLSPISEASMNWPTK 237

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             +A  S  +LK  D+  +  L     +     +  + Y  EF +++   L  ++  +++
Sbjct: 238 VTAAMVSGALLKP-DRMTTIALFQFIRHLQDNGQAAQKYEIEFWRKVFYPLSCLVMVVLA 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCI 346
           +  A      R       +F  +      F     F YI       P+        L+  
Sbjct: 297 LPFA--YLHFRSGGITAYVFGGVMAGISFFLLNNVFGYIGTLQSWWPWLAAAAPGLLYTA 354

Query: 347 SSI--FLLMIKKK 357
            S+  F  ++ ++
Sbjct: 355 LSLSAFAWLVLRR 367


>gi|332299879|ref|YP_004441800.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176942|gb|AEE12632.1| permease YjgP/YjgQ family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 361

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 122/351 (34%), Gaps = 21/351 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           + + + YI      ++  S + I+ +A    + ++++ +      L  I+       +P 
Sbjct: 6   ISTVDRYIFTQFLATYFFSIVLILAVAIAFDVTEKLDKLLQPEVPLRAIIWDYYANFVPY 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +    V + +  N+E++ I + G S   L+KP +  A +++I  F+  +
Sbjct: 66  YANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGVSFRRLLKPYMLGAAVIAILTFLLSS 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFF-------RLDDDLYIKISKYNPNNTLQG 172
            + P             ++     Y+++           ++  + ++ +S YN  + +  
Sbjct: 126 FVIPPGNR--------IRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGY 177

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F +D  + +  K     +  +        L D  +         +         +    
Sbjct: 178 TFSMDRFEGKDLKSRMMANSIVYDTLHNWQLQDYTITYFGERQDSLLRGNQLDTIIPITP 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +           +   L   +      R    + Y  E HKR+       I  L+ +  
Sbjct: 238 KDFLVTEGDVEMLSTPQLYR-SIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVSL 296

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           + ++   R+      + + LS+SF ++  F  +           P++  +L
Sbjct: 297 SARK---RKGGMGLALAVGLSLSF-LYILFMTVTSSFAVTGAMSPMVAAWL 343


>gi|198274616|ref|ZP_03207148.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
 gi|198272063|gb|EDY96332.1| hypothetical protein BACPLE_00768 [Bacteroides plebeius DSM 17135]
          Length = 391

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 125/354 (35%), Gaps = 8/354 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  I + I+   ++   ++ I+       IP 
Sbjct: 33  LKRLDRYIIVKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPISAIIFDYYLNFIPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++++  ++   
Sbjct: 93  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIIALVTYVLST 152

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
            + P    T  +     +      Y+  N+   +D  +   + +Y   N T     +   
Sbjct: 153 EVIPTGSVTRLKFEQVYKNKKRADYVR-NIQLEVDTGVIAYMERYEDYNKTAYRFSLDKF 211

Query: 179 RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            D +      A+  + D       I+ D  +     + + I+        +  E  +   
Sbjct: 212 EDHKLVSHLTARRITYDTTTVHRWIIKDYMIREMKGMRETITRGGRMDSIINMEPQDFLI 271

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L              ++ +  E+++R+       I  +I +      +
Sbjct: 272 TRGQQETMTSPQLREYIDKQKQRGFANIKVFEVEYYRRIATSFAAFILTVIGLS---LSS 328

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R+      + I + +SF  +  F  I      N    P L +++  I  +F+
Sbjct: 329 QKRKGGMGLHLGIGIGLSFS-YILFQTISSTFAINGNAHPNLAVWIPNILYLFI 381


>gi|152973139|ref|YP_001338285.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892751|ref|YP_002917485.1| putative transport system permease component [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330016469|ref|ZP_08308442.1| lipopolysaccharide export system permease protein LptG [Klebsiella
           sp. MS 92-3]
 gi|150957988|gb|ABR80018.1| putative transmembrane protein, transport [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545067|dbj|BAH61418.1| putative transport system permease component [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328528830|gb|EGF55773.1| lipopolysaccharide export system permease protein LptG [Klebsiella
           sp. MS 92-3]
          Length = 360

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  S +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGAGLYTILSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+     +    ++ L+ +   + ++ I +   N+ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHN-FVYIERVKGNDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA S   D + +   L+   E     P     S M   ++          
Sbjct: 181 NPERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++L+M K
Sbjct: 300 LRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359

Query: 356 K 356
            
Sbjct: 360 A 360


>gi|42526554|ref|NP_971652.1| hypothetical protein TDE1044 [Treponema denticola ATCC 35405]
 gi|41816747|gb|AAS11533.1| membrane protein, putative [Treponema denticola ATCC 35405]
          Length = 357

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 124/363 (34%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    +F+++ LF + +  +  +   I     +      ++K+    IP  
Sbjct: 1   MKLLQRYLLKLFIPTFVVAMLFFILLLQLGDLFANIVAYLQNGAQFKDIVKVMWLYIPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P       +  + ++    EL  I + G S      P+L L    S+ +   E+ 
Sbjct: 61  IAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           +  K      QLS K          ++ +       +      +N  N TL   +I+  R
Sbjct: 121 VVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADYFNAENQTLANAYII-VR 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D   +     +S  +  +      +  EV+R    +    +       + +E   +    
Sbjct: 180 DEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQKN 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L + D+                        S++H+R +      I    SI    K    
Sbjct: 240 LSSVDEMRISEAKEFIAALKKNGLPYYEALSKYHRRFSFPFTIFIVLFFSISLGGKF--- 296

Query: 300 RQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             +K I  + I  S+    +F+    +     +  Y  P+   +  +F  S + + ++KK
Sbjct: 297 --KKNILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSIFLLKK 354

Query: 357 KYT 359
             T
Sbjct: 355 SRT 357


>gi|222823976|ref|YP_002575550.1| permease, YjgP/YjgQ family [Campylobacter lari RM2100]
 gi|222539198|gb|ACM64299.1| putative permease, YjgP/YjgQ family [Campylobacter lari RM2100]
          Length = 341

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 123/355 (34%), Gaps = 26/355 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+      + L     +  I  ++  +Q   + S    SL  L ++  YL+P  
Sbjct: 1   MKLIYKYLFNQFLNTMLSLFFTLFTIVSIVFFIQLAKITSYVEISLLELFQLYIYLLPKA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T     ++R  E  ++   G S   +    + +A +LS F+ +   +
Sbjct: 61  LAFTLPISFFIALTLSFYRLSRENESTVLFALGISPKFIASFFMKIAGVLSAFMLVVVLV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
             P             +   T   ++   F +   +  + I+  + NN  + I +     
Sbjct: 121 FIPISFELFDNFV-DYKKISTKINIKTGEFGQRYGEWLVFINTQDENNVYKNIIMYHPKK 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            +    +I  A  G ++     +  +LN G+ +     +  IS   FK+  ++++  +  
Sbjct: 180 NEDDKEQIILASEGKLENQNGIVSFVLNQGKAYEFKEENWHIS--SFKNLLIKSKLYSKD 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  D         + N    + +    Y       L   LF + FG+++       
Sbjct: 238 LNTKHFYDY------WSDLNTSKEKAKEFVIYTLIALFPLASVLFALSFGIVTY------ 285

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  +    F    I   +F  F+ ++   +     + ++++    IS+ + 
Sbjct: 286 -------RYEKGFAYFGIFAVIFAYFTLLVSFYKPPLLAVGVIFILFLSISAFYF 333


>gi|237723640|ref|ZP_04554121.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437988|gb|EEO48065.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 390

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 130/346 (37%), Gaps = 10/346 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 33  KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 92

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 93  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 152

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+  N+   +D  +   I +Y   N     F +D  D
Sbjct: 153 VIPKGNVTRLDFEDRYKKKKKQEYVR-NVQLEVDSGVIAYIERYENYNKTGYRFSLDKFD 211

Query: 181 TQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +    +  A+S + D            + R+    ++  I +        +      ++
Sbjct: 212 DKKLVAHLTARSVTYDTVSVHKWTIKNYMIREMEGMRE-KITRGDRLDTIIKMEPQDFLI 270

Query: 240 LKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +K   Q ++   L              ++ +  E+++R+       I   I +  + ++ 
Sbjct: 271 MKGQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKM 330

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              +      + + L++SF  +  F  +      N    PI+ +++
Sbjct: 331 ---KGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWI 372


>gi|212710412|ref|ZP_03318540.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
           30120]
 gi|212686832|gb|EEB46360.1| hypothetical protein PROVALCAL_01473 [Providencia alcalifaciens DSM
           30120]
          Length = 358

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 141/365 (38%), Gaps = 19/365 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGRTILNSILMTLFLLVSLSGIIKFVEQLRKVGDGDYTAMSAGVFTLLTVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   I    I
Sbjct: 63  DIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVTMIMGEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+  +  +    +  ++ +   D +I I +    +T+Q + I    D 
Sbjct: 123 APAGEQWARNYRAEKIVGSSLVVTDSGMWAKDAHD-FIYIQRIKDASTIQDVSIYRFDDH 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGE-----VHRKSPISKDISI---MKFKSYTLQTES 232
           +    + +A  G+ D D++  +L+  +       +K   S+ ++           L   S
Sbjct: 182 RKLESVMFAARGTYDADKKLWVLSQVQESILGSQQKITGSQRLTYDWKTNLTPEKLGIVS 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N+ ++ ++   Q +++L            ++   Y+    +++   L   +  L+++  
Sbjct: 242 LNADSLSIRGLYQYITYL--------KESGQVASVYQLSMWQKILAPLSAAVMMLMAVSF 293

Query: 293 ADKR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  V    ++    +   + + +  GF          P     L   LF   SIFL
Sbjct: 294 IFGPLRTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVVAAALPSVLFLGVSIFL 353

Query: 352 LMIKK 356
           L+ +K
Sbjct: 354 LVKRK 358


>gi|154174487|ref|YP_001408138.1| permease YjgP/YjgQ [Campylobacter curvus 525.92]
 gi|153793102|gb|EAU00183.2| permease YjgP/YjgQ [Campylobacter curvus 525.92]
          Length = 342

 Score = 97.3 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 134/365 (36%), Gaps = 31/365 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPT 59
           M     Y+L     +F  S    +F+   I    +I  V+S  E +   LLK+  +++P 
Sbjct: 1   MSRVNKYLLYNFLGTF-ASLFSTLFLIMSIVFFIQIARVTSYIEITFGELLKLYMFMLPR 59

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           VL  V P  F +     L  +++  E ++I   G+S  ++ K  L  +  LS  L I   
Sbjct: 60  VLLFVVPIAFFVALAMTLFRLSKENESIVIFTLGSSPNSIAKFFLAFSAALSALLLIVAI 119

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK--YNPNNTL-QGIFIV 176
           ++ P   S +       +  +    L+   F +   D  + +     + N T+ + I + 
Sbjct: 120 VMIPIA-SELNSNFIDYKKTVAKLNLKPTQFGQKFSDWMVYVGSEGSDENGTIYKNIVMF 178

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +     + ++  AQ+  +   +    + LN+G+++      K      FKS T++T  + 
Sbjct: 179 NPFIKDSQRLIVAQNAKMINTKSNIELSLNNGKIY--DMRGKVYHQSNFKSMTIRTAQSE 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V    +  L             R + L TY           LFP+   L +I    
Sbjct: 237 KINDVDSIKEYWLEA------KTSTKRKKDLSTYVL-------VALFPLATTLFAISFGI 283

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIFLLM 353
                R  K    +       FG+ +G+  +I  +   P   IP ++   F     F   
Sbjct: 284 --VTYRYEKGAVYLGT-----FGILFGYFTLIMLLSPRPIIAIPGVFAAFFAAGVWFYKF 336

Query: 354 IKKKY 358
              + 
Sbjct: 337 KIMRR 341


>gi|167626385|ref|YP_001676885.1| hypothetical protein Fphi_0163 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668816|ref|ZP_04756394.1| hypothetical protein FphipA2_08610 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877348|ref|ZP_05250058.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|167596386|gb|ABZ86384.1| conserved membrane protein of unknown function [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843369|gb|EET21783.1| permease [Francisella philomiragia subsp. philomiragia ATCC 25015]
          Length = 352

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 11/205 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI + +  SFL+  L    + ++   L +++  + +  S   L+ I+ Y +P +
Sbjct: 3   LNRIDRYIFKTVFSSFLIVSLIFCILFFIFTYLAQVSN-NDTGASNIELIIITIYQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + I+ SI   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSIVTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           I P        +  K   + T +Y   +L+ +  D     IS  +PN     GI    ++
Sbjct: 122 IAP--------VLQKLADSNTVAYNTHDLWLKTPDGFM-NISNIDPNEGKAYGIRKFITK 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN 204
           D Q  ++ YA+      D  A + N
Sbjct: 173 DNQVQEVRYAEKAEYVNDATANVFN 197


>gi|256425866|ref|YP_003126519.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
 gi|256040774|gb|ACU64318.1| permease YjgP/YjgQ family protein [Chitinophaga pinensis DSM 2588]
          Length = 359

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 123/361 (34%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           M   + YILR    +F+ S + ++ I+ VI + ++I+   S+  S   I++      IP 
Sbjct: 1   MTKIDWYILRKFIGTFIYSLMILLVISVVIDVTEKIDDFMSNNLSFYTIVVDYYFGFIPH 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  ++ P    +      + M   TE++ I  +G S    ++P    A L    L++   
Sbjct: 61  IAALLFPLFIFISVIFFTSKMAYRTEIVAILCSGVSFRRFLRPYWVGAFLFGGLLWLGNR 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DS 178
              P       +  A+            +   R+D   Y+    Y+PN      F+  D 
Sbjct: 121 WTVPVANKIRTKFEAEYVHKKKAQLNMYDKTIRVDSFTYVTFGSYDPNYKSGSNFLYEDV 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R         A   S D       L+   +   + + +        +  +          
Sbjct: 181 RGQNIKFKMKADRISWDSVAGKWKLDYVTMRAINGLKERWWSKTDTTIKIPLNPKEMYEE 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L            E L T+  E ++R       VI  LI          
Sbjct: 241 KNIQEAMTTPELDTYIAREELKGAEGLNTFYVEKYRRTASSGAVVILTLIG--GIIASKK 298

Query: 299 VRQRKKIH-PIFISLSISFGVFWGFSYIIH-KIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           VR    +H  + I +S S+ +F  FS +   K + NP     +  FLF   + +L +   
Sbjct: 299 VRGGSGLHLAVGIVISASYIIFLQFSTVFSIKADLNPLLAVWIPNFLFGGLAFWLYLRAP 358

Query: 357 K 357
           K
Sbjct: 359 K 359


>gi|332704120|ref|ZP_08424208.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554269|gb|EGJ51313.1| permease YjgP/YjgQ family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 360

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 127/369 (34%), Gaps = 22/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR       +     + +  +  + +R++    +   L I+L      IP +
Sbjct: 1   MSVLSRYLLRQNLYLMSICLCLGIAVYLLSDLFERLDDFLEAGRGLKIMLVYFLVKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L++M  N ELL +   G S   +I   L  ++  S         
Sbjct: 61  ISQILPAVFLVAMLVQLSAMRSNRELLALRAGGISYKAIISFFLVYSLFWSGGQLFISQY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           +  K     K++ A+      +     +  +  +D+  + I    P +   + + I    
Sbjct: 121 LGVKGLEYSKRIWAEDVRGKEYVTKTIHKLWLREDNDILHIDTVQPASGKGRNLSIYTLA 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM-------KFKSYTLQTES 232
             +   + +  + + +      +LND  +      + +            FKS+TL    
Sbjct: 181 QDRRSVVQFINAKTFEAKEGNWVLNDVIIIDPIRFTSEYKPTLKLSLGEAFKSFTLAESR 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N + + L    + +  L              +E  R+ +H +L+   +     +++++A
Sbjct: 241 NNPAQLPLWELGRAIHQL--------EVTGSNVEGLRTIWHGKLS---YAFSITIMALLA 289

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                       ++    +  ++  +F+GF  +     +  +  PI   +L     I   
Sbjct: 290 LAIITFEH---NVYLNLTAGLVATFLFYGFFVLGSSAGEMGFLPPIAGAWLGNAVFILGA 346

Query: 353 MIKKKYTKI 361
             +  +  I
Sbjct: 347 TTRLFWRSI 355


>gi|206575795|ref|YP_002240776.1| putative permease [Klebsiella pneumoniae 342]
 gi|288937432|ref|YP_003441491.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|290512173|ref|ZP_06551540.1| permease [Klebsiella sp. 1_1_55]
 gi|206564853|gb|ACI06629.1| putative permease [Klebsiella pneumoniae 342]
 gi|288892141|gb|ADC60459.1| permease YjgP/YjgQ family protein [Klebsiella variicola At-22]
 gi|289775168|gb|EFD83169.1| permease [Klebsiella sp. 1_1_55]
          Length = 360

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  S +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGAGLYTILSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+     +    ++ L+ +   + ++ I +   N+ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHN-FVYIERVKGNDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA S   D + +   L+   E +   P     S M   ++          
Sbjct: 181 NPERRLESVRYAASAKFDSENKVWRLSQVDESNLTDPKQVTGSQMVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++L+M K
Sbjct: 300 LRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359

Query: 356 K 356
            
Sbjct: 360 A 360


>gi|152981500|ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacterium sp. Marseille]
 gi|151281577|gb|ABR89987.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 122/386 (31%), Gaps = 32/386 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    IGRS L   +  + +     ++  +  V      +          +P  
Sbjct: 1   MKILQKYFSLEIGRSVLFVLIAFLALFAFFDLVGELKSVGHGGYKIQHAFLYVVLEMPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+     +E  I+  +  S   +   +L + ++ ++  F+    
Sbjct: 61  VYELMPIAALIGTIWALSQFAARSEFTIMRASSMSTAMVGAILLKIGVVFALITFVFGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-----------LDDDLYIKISKYNPNNT 169
           + P   +  +++   +Q           L+ +           +    ++ + +  P+  
Sbjct: 121 VVPITSNMAERIRVNSQGGALSQEFRSGLWTKDVIRSNGQEGEVLGSRFVNVRELRPDGK 180

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-----------KD 217
           L  + I + +R+     +  A S           LNDG V                    
Sbjct: 181 LMNLKIYEFNRNFHLTSLITAGSADY-AGANTWTLNDGTVAAFGESKLQGATTATDITTA 239

Query: 218 ISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           IS  KFK+ +L +E      S         +   L+N      +        Y     K+
Sbjct: 240 ISTSKFKTQSLVSEMTPEILSVGFTDPATMSAIALVNYT-QYLSENNRDTVRYEIALWKK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--- 332
           +       +F ++++         R       IF  + I        S   H    N   
Sbjct: 299 VVYPFA--VFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWP 356

Query: 333 PYYIPILYLFLFCISSIFLLMIKKKY 358
           P+   IL   LF   ++  LM  +++
Sbjct: 357 PFATAILPSLLFLTVAVGALMWVERH 382


>gi|28198043|ref|NP_778357.1| hypothetical protein PD0107 [Xylella fastidiosa Temecula1]
 gi|182680670|ref|YP_001828830.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|28056103|gb|AAO28006.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182630780|gb|ACB91556.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|307579131|gb|ADN63100.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 361

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 102/281 (36%), Gaps = 17/281 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLMSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T L  +F+   +
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D     +  A+ G +       + + L DG+           +  ++ F          +
Sbjct: 181 D-DRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELS 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                   +      L+           +     +++ H R
Sbjct: 240 VVYDSNHPDILPTFNLI----------GDPRREAQAQLHAR 270


>gi|332885188|gb|EGK05439.1| hypothetical protein HMPREF9456_02640 [Dysgonomonas mossii DSM
           22836]
          Length = 365

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 128/362 (35%), Gaps = 21/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ S + I+ I+ V  I +R++   S+   L  I+       +P 
Sbjct: 4   LSILDKYIIKKFLGTYIFSIILIISISVVFDINERLDKFLSNNAPLKAIVFDYYMNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + + G S   L+KP +  A ++++  FI  +
Sbjct: 64  YTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVGSFILSS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALT---FSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFI 175
            I P    T  +   K     +    S ++     ++D  + + I +++    L   + +
Sbjct: 124 FIIPPANETRIKFQNKYIKDKSVDYASRIQ----MQVDKGVILYIERFDNKTRLGYNLSL 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +      A     D      +LN+  +     + + I+       TL    ++ 
Sbjct: 180 DKFEGKELKSRLVASRIEYD-TAYHWVLNNYSIREFHGMKEKITTGTRIDTTLNVIPSDF 238

Query: 236 STIVLKANDQNLSFLL-----NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              V      +   L             N     +  +  EFHKR        I  +I  
Sbjct: 239 LVSVNDFEQMSTPKLYSYIQRQKEKGLANVGGVSITQFEIEFHKRFASVFSAFILTIIG- 297

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                    R+ K    + I + +   V +  F  +      +    P+L +++  I  +
Sbjct: 298 ----ASLSARKMKGGMGLNIGIGLGLSVTYIMFQTVSSSFAVSGTMPPMLAVWIPNIVFM 353

Query: 350 FL 351
           F+
Sbjct: 354 FI 355


>gi|308189158|ref|YP_003933289.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
 gi|308059668|gb|ADO11840.1| Inner membrane protein yjgQ [Pantoea vagans C9-1]
          Length = 358

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 127/359 (35%), Gaps = 5/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +++   +V ++ +I+ + ++      + S       +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMLTLFMLVSLSGIIKFVDQLRKTGQGSYSALSAGYYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGALAQRSELVVMQAAGFTRMQVALSVMKTAIPLVLLTMAIGEFV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+          +  L+ +  ++ +I I +   +N + G+ I +  D 
Sbjct: 123 APSGEQMARNYRAQQLYGGALVSTQNGLWAKDGNN-FIYIERIKGDNEIDGVSIYNFNDQ 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    + YA + + D  ++  +L+   E +   P     S      +           + 
Sbjct: 182 RRLQSVRYAATATWDAAKKRWMLSQVDESNLTDPKLITGSQSLSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  ++  L +          +    Y+     ++ Q L   +  L+++         
Sbjct: 242 LDPDALSIRGL-HSYSKYLKQSGQEAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRS 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                     IS    F V       +  +   P  +  + L  F   +I + M+ K+ 
Sbjct: 301 VSMGVRVVTGISFGFLFYVLDQIFGPLSLVYGLPPILGAI-LPSFAFFAISMFMLIKRR 358


>gi|119476402|ref|ZP_01616753.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
           HTCC2143]
 gi|119450266|gb|EAW31501.1| hypothetical protein GP2143_08124 [marine gamma proteobacterium
           HTCC2143]
          Length = 353

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 122/366 (33%), Gaps = 23/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  S L+    ++ +  +  I+  +  + S        L+   Y +P  
Sbjct: 1   MNKLGRYISTTITASTLLVLFMLLGLDAIAAIVDEMGYL-SGNYDFVAALRFVIYSVPAT 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   +     L ++   +EL+++ + G S + ++  V+   I++ I   +    
Sbjct: 60  MFDLLPFAALVGCLAGLGTLASGSELVVMRSAGVSTLRIVWMVMRPIIVVMIAGMLVSEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K   A A          E L+   + + ++  +   PN  L G+ +    +
Sbjct: 120 VAPVTESIAKSERAIALKKSQNIVSREGLW-HREANRFMHFNAVQPNGILYGVTMYQFDE 178

Query: 181 TQTH-KIYYAQSGSIDLDRQAIILND-------GEVHRKSPISKDISIMKFKSYTLQTES 232
                   YAQ           +L D           RK          +     L    
Sbjct: 179 QHKPQSTLYAQRAIYQSGE--WLLEDVVESIITDTRVRKIASPSKPWSTELSPELLNILM 236

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISI 290
            +   + +  NDQ  ++L     N+          YR  F K++ Q L    ++   IS 
Sbjct: 237 LDPIDLSIAGNDQYANYLQAQGLNS--------SPYRLAFWKKILQPLSTLALVLLAISF 288

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +    R +    +    + + +             +    Q P Y  ++ + +  +  ++
Sbjct: 289 IFGPLREVTMGYRIFIGVLVGIVFRTAQDILAPASLVYGFQ-PIYASLIPIVICAVLGLW 347

Query: 351 LLMIKK 356
            L   +
Sbjct: 348 FLRRAR 353


>gi|283786944|ref|YP_003366809.1| permease [Citrobacter rodentium ICC168]
 gi|282950398|emb|CBG90046.1| putative permease [Citrobacter rodentium ICC168]
          Length = 360

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 127/363 (34%), Gaps = 15/363 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ + D + ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAK-DGNSFVYIERVKGDEELGGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D R  +   + YA S   D +++   L+   E   + P     S     ++        
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEQKVWRLSQVDESSLQDPKQITGSQTVSGTWKTNLTPDK 238

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + L  +  ++S L N          +    Y+     ++ Q L   +  L+++    
Sbjct: 239 LGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIF 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                          IS    F V    F  +       P    +L    F   S++L+M
Sbjct: 298 GPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPVIGALLPSASFFFISLWLMM 357

Query: 354 IKK 356
            K 
Sbjct: 358 RKS 360


>gi|153951328|ref|YP_001398257.1| hypothetical protein JJD26997_1188 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938774|gb|ABS43515.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 341

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 122/327 (37%), Gaps = 20/327 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MTPIVF-ELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSDKH-ENIIMYRPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+    +
Sbjct: 179 KAGDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  +      LN NP               EF   +T  LFP+   L ++      
Sbjct: 238 LQTKKFYEY--WNDLNENPQRAR-----------EFVIYITIALFPLASTLFALCFGLVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS 323
               +      +F  ++I FG+   FS
Sbjct: 285 YRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|260592209|ref|ZP_05857667.1| putative membrane protein [Prevotella veroralis F0319]
 gi|260535843|gb|EEX18460.1| putative membrane protein [Prevotella veroralis F0319]
          Length = 405

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 126/361 (34%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ + L I+ IA V    + ++  +        I+       IP 
Sbjct: 45  LGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 104

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   ++++   F   +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMLSCVVIAGLTFYLNS 164

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
            + P     R   + L   ++   +   ++  LF  +  +    I  Y+       G  +
Sbjct: 165 FVIPHGTVIRQNFETLYRNSKKNTSAENVQ--LF--VAKNTTAYIQNYDDQYKRGYGFSL 220

Query: 176 VDSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           V  ++ +      A      +I   +    L++ ++     + + I     K   L  E 
Sbjct: 221 VKIKNKKIVSHLTAMEIQYDTIADSKYHWKLSNWKIRTLKGLKEHIQSGTTKDTVLLMEP 280

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      +        LL+      +     +  Y  EFHKR+       I  +I +  
Sbjct: 281 TDLVYSKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLAL 340

Query: 293 ADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + ++   R+      + I L++SF  +          I+ N   +   ++     + I  
Sbjct: 341 SSRK---RKGGMGLSLGIGLALSFSYIMLQTVSATFAIQDNTPPVLAAWIPNIIFAIIAY 397

Query: 352 L 352
            
Sbjct: 398 F 398


>gi|224586303|ref|YP_002640102.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470831|gb|ACN48661.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 360

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYVF 180

Query: 179 RDTQT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +    + YA S   D + +   L+   E   ++P     S     ++          
Sbjct: 181 NDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L ++  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDSDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  +  L            LM++K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRK 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|134095576|ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas arsenicoxydans]
 gi|133739479|emb|CAL62530.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 382

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 125/390 (32%), Gaps = 40/390 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    IGRS +   +  + +     ++  +  V      +   L      +P  
Sbjct: 1   MKILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGHGGYKIQHALLFVLLSMPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   L+     +E  I+  +  S       ++ + ++ +I  F+    
Sbjct: 61  LYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-----------LDDDLYIKISKYNPNNT 169
           + P   +  +++    Q           L+ +                ++ +    P+  
Sbjct: 121 VVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDGQ 180

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKD 217
           L  + I + +R+     +  A       D    +L++G                + I+  
Sbjct: 181 LTDLKIYEFNRNFHLTALITAARADYQGD-NVWLLSNGSQAEFGETELMGAAVATDITTA 239

Query: 218 ISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
           IS   F S  L +E      S         +   L+N       Y   L E  R      
Sbjct: 240 ISTRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVN-------YTQYLAENNRETARYE 292

Query: 276 LTQW---LFPV-IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           +  W   ++P  +F ++++         R       IF  + I        S   H    
Sbjct: 293 IALWKKVVYPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLL 352

Query: 332 N---PYYIPILYLFLFCISSIFLLMIKKKY 358
           N   P+   IL   LF +++I  L+  +++
Sbjct: 353 NTWPPFATAILPSLLFLLAAIGALLWVERH 382


>gi|254786689|ref|YP_003074118.1| SecD export membrane protein [Teredinibacter turnerae T7901]
 gi|237687240|gb|ACR14504.1| SecD export membrane protein [Teredinibacter turnerae T7901]
          Length = 354

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 125/362 (34%), Gaps = 15/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S +   L IV +  +  ++ +++ +     +    L      IP+ 
Sbjct: 1   MRKLQRYIAAQVWGSVMGVLLVIVSLDAIADLVDQLSQLKGD-YTFLEALFYVVLYIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +  ++EL+++   G S   LI  V+   +L  I   +    
Sbjct: 60  VCDYLPLAALVGCLIGLGLLANSSELVVMRAAGVSVRQLIWSVMRPVLLFIIVGALVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             Q        E  L+FR   + Y+  +   PN  L GI      D
Sbjct: 120 VSPYTDQYADSRRDLLQGHERALQSERGLWFREGSE-YMHFNAVLPNGRLYGITRYKFAD 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS---YTLQTESANSS 236
                +  + +S     D    +   GE+ +     K     +F S   YT +   +  +
Sbjct: 179 GGRLEQASFIRSAIYQGDH--WVEQGGEITQFDAEDKVDRE-EFISRNWYT-EISPSLLN 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +VL  ++  +  L     N    +      YR  F ++  Q L  +   +I+I      
Sbjct: 235 VLVLDPDELPMQRLYA-YANYQEKQNIDSSEYRLAFWQKALQPLATLSLVMIAISFIFGP 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIK 355
             +RQ      +FI + +   VF     +   +     + P+   L        F  ++ 
Sbjct: 294 --LRQTTMGFRVFIGVIVGL-VFQTSQKLFGPMSIIMGFSPMFAVLIPIAFCFAFGWLLI 350

Query: 356 KK 357
           K+
Sbjct: 351 KR 352


>gi|153806356|ref|ZP_01959024.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
 gi|149131033|gb|EDM22239.1| hypothetical protein BACCAC_00617 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 131/364 (35%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWSKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F+  +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFMLSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +   T   ++      +D  +   I  YN        F +
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNTARNVQ----LEVDSGVIAYIDNYNNAMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  V     + + I+        +  E ++
Sbjct: 183 DKFVDKKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDKIDSIINMEPSD 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +  +        L +            ++ +  E+HKR+       I  +I +    
Sbjct: 243 FLIMKNQQEMLTSPQLSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVS-LS 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
            R           I + LS S   +  F  I      N    P++ +++     + I   
Sbjct: 302 SRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAINGNVPPVIAVWIPNILYAGIAFF 358

Query: 353 MIKK 356
           + +K
Sbjct: 359 LYQK 362


>gi|315452594|ref|YP_004072864.1| Integral membrane protein [Helicobacter felis ATCC 49179]
 gi|315131646|emb|CBY82274.1| Integral membrane protein [Helicobacter felis ATCC 49179]
          Length = 348

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 125/330 (37%), Gaps = 14/330 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L   G+ F    + + FIA ++ ++    +      S   LL++  YL+P  
Sbjct: 1   MQIAKNYMLNAAGQVFFSFFIVLFFIASIVMLISIATVTLVVKLSALDLLQLYFYLLPGT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F       L  ++ + ELL+  + G +   +++  L L +++S  L +   I
Sbjct: 61  LFFIIPITFFGACVIGLARLSYDHELLVFFSLGIAPRQIVRAFLPLCLVVSALLLVFSLI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +S         +  +  + ++   F +   D  + + K + N     + +     
Sbjct: 121 LVPASKSAYYSFLRDKKERVDVN-IQAGEFGQKLGDWLVYVGK-SQNGVFGDLVLFSHSG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             T     A+ G I        L     +        +  + FK   L+ + A S     
Sbjct: 179 LSTESFIIAKEGRIRNQNGLFELELDHGNAYFAAKGQVRKVHFKELILKNKPALSE---- 234

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK--RLTQWLFPVIFGLISIVAADKRAL 298
               ++ ++L   +     Y  +         H+  R TQ +   +F L S+       +
Sbjct: 235 ---RKDAAYLYGHDF--IGYWGKAFGA-HPNAHQQRRFTQAILVALFPLASLFCIPLFGI 288

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              R   +  ++ + I+ G+++   +II +
Sbjct: 289 ANPRYAKNLSYVYVLITTGIYFLLMHIISQ 318


>gi|183600431|ref|ZP_02961924.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
 gi|188020227|gb|EDU58267.1| hypothetical protein PROSTU_04002 [Providencia stuartii ATCC 25827]
          Length = 358

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 127/359 (35%), Gaps = 6/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   IP  +
Sbjct: 3   GVLDRYIGRTILNSILMTLFMLVSLSGIIKFVEQLRKVGDGEYTTLGAGVFTLLTIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   +    +
Sbjct: 63  DIFFPMAALLGALLGLGALASRSELVVMQASGFTRLQIALSVMKTAIPLVIVAMLIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRD 180
            P      +   A+  +  +    +E ++ +   D +I I + +   ++Q + I   +  
Sbjct: 123 APSADQWARNYRAEKIVGNSLVVTDEGMWAKDGPD-FIHIQRVSDTTSIQEVSIYRFNEQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +   + +A SG+ D D Q  +L   D  +            + ++ +           +
Sbjct: 182 HKLTSVMFASSGAYDKDNQLWVLSQVDESILSSEKKITGSQRLTYE-WKTNLTPEKLGIV 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L A+  ++  L            ++   Y     K++   L   +   +++        
Sbjct: 241 SLSADSLSIRGLY-QYIAYLKESGQVAAVYELSMWKKILAPLSAAVMMFMAVSFIFGPLR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      I     F V          +   P  I  L   +  +    +L++K+K
Sbjct: 300 TVPMGVRVVSGIVGGFLFYVLNEGFGKWSLVYSIPPIIAALLPSVLFLGVSIVLLVKRK 358


>gi|197121804|ref|YP_002133755.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
 gi|196171653|gb|ACG72626.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. K]
          Length = 360

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 118/347 (34%), Gaps = 13/347 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R +  +FL++   +V I   +  +   +  + +   L  +L++  Y    V+ 
Sbjct: 2   ILFRYVARRMLGAFLVALAGVVGIYLAVDFVDNASAYTGAGW-LPAVLQLYAYKAAGVVY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           MV P    +      +   +  E   +   G     L  PVL + +L    L +  + + 
Sbjct: 61  MVAPAALILGAGIATSMFRQTREYTAMRAVGLGPWRLAVPVLAVTLLAGGVLVVLNDAVG 120

Query: 123 PKCRSTIKQLSA--KAQLALTFSYL---EENLFFRLDDDLYIK-ISKYNPNNTLQGIFIV 176
            +     ++++A   A+      +L   E   +FR  D   +  +    P+   + + + 
Sbjct: 121 VQAAERAEEITAHRFARGGNLRRFLAAREPKRWFRGMDGKRVYHLRGNLPDGGFERVTVY 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANS 235
           +  +          +  +  D +A IL D E     P     +     + Y         
Sbjct: 181 ELAE-GFTLARRIDAARMHPDGRAWILEDVEDRTFRPDGSMALERADRRRYAFDEPPDAF 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + I  K +    + L+           + +  ++ E + RL   L  +      +  A  
Sbjct: 240 AVIAGKPDQMRWNTLIRQ-IGIRKRLGQPVTEFQLERYDRLAYPLAGI--PGALLALALA 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
               R+      +  ++ ++  +FWG   +   +  +    P +  +
Sbjct: 297 LRRDRKGHLAAALLEAVGVTL-LFWGMQGVSSALGLSGRVAPWIASW 342


>gi|326316898|ref|YP_004234570.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373734|gb|ADX46003.1| permease YjgP/YjgQ family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 365

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 130/372 (34%), Gaps = 22/372 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           MK+    I R    +     L  + + +   ++  +  V       ++  L      IP+
Sbjct: 1   MKTIRGLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQAYQMSHALLYVSLGIPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+    +++E  I+  +G      ++ +L L +   +  F   +
Sbjct: 61  HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWRALRTLLVLGLGFVMLTFTVGD 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P      +    +   +     T ++L+E    + D  + + +     +  +  + I
Sbjct: 121 YLAPATDRLAQLVRARYLGQITTGATGAWLKE---RQGDRSVAVNVRALRHDGGMSNVRI 177

Query: 176 VD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEV---HRKSPISKDISIMKFKSYTLQTE 231
            +   D +      A +G    D  A  L+D +    HR+      +  ++   +   T 
Sbjct: 178 FEFDGDGRLASTLQAAAGEFGTD--AWELSDVKRSVFHRRGEAEAHVERLQESRFRWPTH 235

Query: 232 -SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            SA+     L   D+  +  L     +     +  + Y  EF +++   L  ++  ++S+
Sbjct: 236 ISADMVAASLLKPDRMATIDLFQYIRHLESNGQAAQKYEIEFWRKVFYPLSCLVMVVLSL 295

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCIS 347
             A      R       +F  +      F     F Y  +    +P+        ++ + 
Sbjct: 296 PFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYSLL 353

Query: 348 SI--FLLMIKKK 357
           S+  F  ++ ++
Sbjct: 354 SLGAFGWLVLRR 365


>gi|225011756|ref|ZP_03702194.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004259|gb|EEG42231.1| permease YjgP/YjgQ family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 463

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 99/243 (40%), Gaps = 15/243 (6%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +      I+ ++     + I+ K   Y  P ++P+V P    + +     +++ N
Sbjct: 1   MFIFIIQTFWLFIDELAGKGLDIIIISKFLLYYSPKLIPLVLPLSVLLASLMTYGTLSEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +  +    +LL I  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRALLALTIFHVLLGIGTFYFSNHVIPYGELKSYNLRRNLAKLEPTL 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQ- 199
            + E +F  + + + IK+++   +N   L+ + I + + +++ + +  A+ G +  +   
Sbjct: 121 AIREGIFNEIGE-INIKVARKYGDNDRFLEDVIIHEYTPNSENNIVIKAERGEMKSETTD 179

Query: 200 ---AIILNDGEVHR-----KSPISKDI--SIMKFKSYTLQTESANSSTIVLKANDQNLSF 249
               ++L +G  +      K+   + I  + + F+ Y +  + +  + + L+  +   +F
Sbjct: 180 PNLKLVLYNGNRYEEVIPKKATDKERIPHAKVYFEEYEMNIDLSKFNNVDLEEENYKSTF 239

Query: 250 LLN 252
            + 
Sbjct: 240 RMQ 242


>gi|149279360|ref|ZP_01885491.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
 gi|149229886|gb|EDM35274.1| hypothetical protein PBAL39_13617 [Pedobacter sp. BAL39]
          Length = 367

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 128/365 (35%), Gaps = 10/365 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGY-LIPT 59
           +K  + YI+     +FL +    V I  +  + ++++   S+  +   ++ +     IP 
Sbjct: 8   IKIIDWYIISKYLGTFLYTLTLFVVIIVIFDLSEKLDDFLSNNLTFWQVVSLYYAGSIPF 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M++P    +        M   TE++ I + G S    + P    A ++      +  
Sbjct: 68  YVNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFISASIIFAANLGANL 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P    T+K       +       + ++  +LD   YI +  ++  N     F +D+ 
Sbjct: 128 YVLPYTN-TLKNTFENTYVKKNDPSSKSDIHMKLDARTYIYMRSFDNKNKTGAQFSLDNF 186

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +     +   A     D  +++  L +  +     + + ++    K+     +       
Sbjct: 187 NGDEMTRKIVADEIKWDSLKRSWKLTNYSIRDIKGLKETMTNGAGKTKDTILDMRPDDFS 246

Query: 239 VLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 +NLS   L +           ++     E +KR    L   +  LI +  + ++
Sbjct: 247 AYDNIFENLSNQELSDKIKKEKIRGSGIMNDLLFERYKRYLHPLSAYVLTLIGVALSSRK 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIK 355
               +     P+ I + +SF  +  F+           + P+L  L    I  I    + 
Sbjct: 307 V---RGGVGLPLGIGILLSF-TYIVFNQFAKMFSLKGEFPPLLAVLMPTIIFGILGFYLL 362

Query: 356 KKYTK 360
           KK  K
Sbjct: 363 KKAPK 367


>gi|317477038|ref|ZP_07936280.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316906831|gb|EFV28543.1| hypothetical protein HMPREF1016_03264 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 393

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 132/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 35  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 94

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 95  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 154

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 155 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 210

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D        + D  +     + +  SI+K +          
Sbjct: 211 DKFKDKQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRE--SIVKGEKMDTILFMEP 268

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 269 ADFLIMKNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 328

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  I      N    P + ++    + +   
Sbjct: 329 ----SSKKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIA 384

Query: 352 LMIKKKYTK 360
             + KK  K
Sbjct: 385 FYLYKKAPK 393


>gi|154707760|ref|YP_001424260.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|154357046|gb|ABS78508.1| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 355

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 124/364 (34%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI   I  +  +  L ++ I   ++ + +++ +      L          +P+ 
Sbjct: 1   MPLLNRYIRNAIITATALVMLVLLGIEMFMEFIGQLSQIGLVHYGLGQAFLYVLTQLPSD 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  ++EL+++   G S   +   V+  A+L+ + +     +
Sbjct: 61  LYQLFPMAGFLGCLIGLGRLASSSELMVMRTAGVSIAGVTWAVVKAALLMMVAMTFIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI---FIVD 177
           I P+  ++ ++    A           +++       +I I   +  N +  +   FI  
Sbjct: 121 IAPQIEASGEETKLTALSKAVGYKALGDVWLHGAQ-SFIHIGSVDAKNKISEVSQFFI-- 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESANSS 236
           +   Q     YA  G         IL + +  + +P  + +  I KF   T+     +  
Sbjct: 178 NNKHQLLSAVYAPKGEYVKGH--WILYNVKQTQFTPNRTTEKKIAKFP-LTIVFNPDHLQ 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                 + Q++  L +               Y   F +R  Q L  V+   + +      
Sbjct: 235 QGRKMVDRQSIVGLYH-TIRYRQQAGLQTSRYVFAFWQRFIQPLTTVVMICLGVPFIFG- 292

Query: 297 ALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             +RQ      I   + I F  +     F       +  P +  ++   LF +  + LL 
Sbjct: 293 -SLRQASMGLRILTGIVIGFAFYMLNQFFGPFAMVYQIPPIFAALMPTVLFAVGCVILLR 351

Query: 354 IKKK 357
             ++
Sbjct: 352 YSRR 355


>gi|205356326|ref|ZP_03223091.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345711|gb|EDZ32349.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 341

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 122/327 (37%), Gaps = 20/327 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MIPIVF-ELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSD-KYENIIMYRPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+    +
Sbjct: 179 KADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  +      LN NP               EF   +T  LFP+   L ++      
Sbjct: 238 LQTKKFYEY--WNDLNENPQRAR-----------EFVIYITIALFPLASTLFALCFGLVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS 323
               +      +F  ++I FG+   FS
Sbjct: 285 YRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|120611823|ref|YP_971501.1| permease [Acidovorax citrulli AAC00-1]
 gi|120590287|gb|ABM33727.1| permease YjgP/YjgQ family protein [Acidovorax citrulli AAC00-1]
          Length = 365

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 130/374 (34%), Gaps = 26/374 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           MK+    I R    +     L  + + +   ++  +  V       ++  L      IP+
Sbjct: 1   MKTIRWLIYREALAAVGFVTLGFLALFFFFDMVDELRYVGRVQGYQMSHALLYVSLGIPS 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    + T  V+    +++E  I+  +G    + ++ +L L +   +  F   +
Sbjct: 61  HLYELLPITVLIGTIFVMARFAQSSEFTIMRTSGLGPWSALRTLLVLGLGFVMLTFTVGD 120

Query: 120 IIEPKCRSTIK----QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P      +    +   +     T ++L+E    + D  + + +     +  +  + I
Sbjct: 121 YLAPATDRLAQLVRARYLGQITTGATGAWLKE---RQGDRSVAVNVRALRHDGGMSNVRI 177

Query: 176 VD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEV---HRKSPIS---KDISIMKFKSYTL 228
            +   D +      A +G    D  A  L D +    HR+       + +    F  +  
Sbjct: 178 FEFDGDGRLASTVQAAAGEFGAD--AWELRDVKRSVFHRRGEAEAHVERLQEASF-RWPT 234

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
              S   +  +LK  D+  +  L     +     +  + Y  EF +++   +  ++  ++
Sbjct: 235 HISSDMVAASLLKP-DRMATIDLFQYIRHLESNGQAAQKYEIEFWRKVFYPMSCLVMVVL 293

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFC 345
           S+  A      R       +F  +      F     F Y  +    +P+        ++ 
Sbjct: 294 SLPFA--YLHFRSGGIAGYVFGGVMAGISFFLLNNVFGYAGNLQNWSPWLTAAAPGIIYS 351

Query: 346 ISSI--FLLMIKKK 357
           + S+  F  ++ ++
Sbjct: 352 LLSLGAFGWLVLRR 365


>gi|328949932|ref|YP_004367267.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450256|gb|AEB11157.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 335

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 115/357 (32%), Gaps = 29/357 (8%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+  L  + +     +     +       L  +L+I  Y +P  L +
Sbjct: 2   LGRYLLREVLPPYLLGTLLFIALITTDLLASLSGVFLRQGTPLVEVLQIVLYRMPFTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R++EL  +  +G S + L+  +L L+ +++  +  +   ++P
Sbjct: 62  ALPLGLVFAILIGLARWVRDSELKAMYASGVSPLRLLPVLLGLSAVVAGGVLFNAAWLKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN----NTLQGIFIVDSR 179
           +  +  +QL  +       S +  N  +  +       ++  P+      L+ + +V+  
Sbjct: 122 EAHARYEQLLYRVYYGTVPSGVLSNQAYAPEGLGVYFAARIYPDGQGGGRLENVRVVEPS 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                 ++ A  G     R   +L D   +R +P       ++ +S       A      
Sbjct: 182 GA----LWSAARGVWQDAR--WVLED--AYRINPDG----TVETRSRVPLPFPAQFVPPT 229

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L      +P  R  L   Y                FG+I++        +
Sbjct: 230 TSYEALPLGELRELARVDPEARFPLQRRYAD-------------AFGVIALAWLAGVVGL 276

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             R+        + + FG F  ++                +L       +     ++
Sbjct: 277 GLREAAWAFVAVVLLIFGYFVLWTLAAQLARFALVGAYGAWLPNAVYFLLAAWGTRR 333


>gi|255531333|ref|YP_003091705.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
 gi|255344317|gb|ACU03643.1| permease YjgP/YjgQ family protein [Pedobacter heparinus DSM 2366]
          Length = 367

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 127/363 (34%), Gaps = 14/363 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGY-LIPTV 60
           K  + YI+     +FL +    V I  +  + ++++   S+  +   ++ +     IP  
Sbjct: 9   KILDWYIISKYLGTFLYTLTLFVVIIIIFDLSEKLDDFLSANLTFWQVISLYYAGSIPYY 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + M++P    +        M   TE++ I + G S    + P    A ++      S   
Sbjct: 69  VNMLSPLINFIAVIFFTAKMADQTEIVPILSGGVSFNRFLLPYFVSAFVIFAVNLASNLY 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P     +K       +       + N+  +LDD+ YI +  ++  +     F +D+  
Sbjct: 129 ILPYTN-QLKNTFENTYVKKNDPSSKSNIHMKLDDNTYIFMDNFDNKSKTGTKFSLDNFK 187

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                K   A     D  +++  L +  +   + + +    +   S T  T   +     
Sbjct: 188 GDVLTKKLIADEIKWDSLKRSWKLTNYSIRYVNGLKETF--VSGTSLTKDT-VLDMRPDD 244

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFPVIFGLISIVAAD 294
             A D     L N   +    +  +  +        E +KR    L   +  LI +    
Sbjct: 245 FSAYDNVFENLSNKELSEKIRKERIRGSGIWNDLLFEQYKRYLHPLSAFVLTLIGVA--L 302

Query: 295 KRALVRQRKKIH-PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               VR    +   I I LS ++ VF  F+ +       P  + ++   LF     F L+
Sbjct: 303 SSRKVRGGVGLPLGIGILLSFAYIVFNQFAKMFSLKGGMPPLLAVIAPTLFFGLLGFYLL 362

Query: 354 IKK 356
            K 
Sbjct: 363 RKA 365


>gi|323345623|ref|ZP_08085846.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
           33269]
 gi|323093737|gb|EFZ36315.1| hypothetical protein HMPREF0663_12382 [Prevotella oralis ATCC
           33269]
          Length = 412

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 126/348 (36%), Gaps = 10/348 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S L I+ IA V    + ++  +     L  I+       IP 
Sbjct: 52  IKRLDRYIIKKFIGTYIFSILLIIAIAIVFDFNENLSKFTQYHAPLHAIIFDYYANFIPY 111

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   +L+S   F    
Sbjct: 112 YSNLFSPLFVFIAVIFFTSKLAGNSEIISMLAAGVSFRRLMRPYMISCVLISALSFYLSA 171

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P   + I+Q               +N+  ++   +   I  Y+  +     F +D  
Sbjct: 172 YVIPHG-TVIRQNFESLYRNNRKLTSADNVQLQVGTGIIAYIQHYDDRSKRGYGFSLDKF 230

Query: 180 DTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             +    +   +     +I   +    + + ++ +   + + I+    K   +Q E  + 
Sbjct: 231 QEKKLISHMTATEISYDTISESKYHWTVRNWKIRQLKGLREHITSGGEKDTLIQMEPTDL 290

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +        L +      +     +  Y+ E+HKR+       I  +I +  + +
Sbjct: 291 VYSKGQQETFTSPQLKDYISKQIDRGSGNVVQYQVEYHKRIAASFASFILTIIGVSLSSR 350

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +   R+      + I + +SFG +     +      N    P+L  ++
Sbjct: 351 K---RKGGMGLYLGIGMGLSFG-YILLQTVSSTFAINAGAPPMLAAWM 394


>gi|124514757|gb|EAY56269.1| putative permease, YjgP/YjgQ family [Leptospirillum rubarum]
          Length = 362

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 125/369 (33%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI   + + FL+  + +  I  VI  +++I    S   +L ++ +   Y    V
Sbjct: 1   MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSHHAALPLIGQYFFYRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L  +++N EL  I   G S +   KP L L +L+S+        
Sbjct: 61  SFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQ 120

Query: 121 IEPKCRSTIKQLSAKAQLA-----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P     +       ++           L    F   + D+Y   +  +  N L  + +
Sbjct: 121 LVPYAY-QMTDYIKDVRIDQGKSGNVTFELNNVWFRHGNQDIYGARTIRDGGNELDKVVL 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               D   H  +   + ++   +      DG + R  P    + I  F+           
Sbjct: 180 YHL-DRTFHLSWQVDAKTLRYHQGLWSFQDGHLTRFLPD-GSLKIESFQKMDTTLTRRPV 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH-KRLTQWLFPVIFGLISIVAAD 294
                K     ++ L  P  +      E     R ++   R     FP+   L+ ++A  
Sbjct: 238 DFTYEKTR---MTHLSYPELDRYIALLEKSHLPREKYEVTRDAMIAFPIAAFLMVLMAIP 294

Query: 295 KR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-----FCISS 348
                 RQ        ISL +S   +W    +   + +    +P +  +      F +S 
Sbjct: 295 FGIREGRQVGIAKGFGISLLLSMS-YWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSI 353

Query: 349 IFLLMIKKK 357
              L++ + 
Sbjct: 354 SLFLLLNRS 362


>gi|146299866|ref|YP_001194457.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
 gi|146154284|gb|ABQ05138.1| permease YjgP/YjgQ family protein [Flavobacterium johnsoniae UW101]
          Length = 486

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 99/254 (38%), Gaps = 16/254 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    +F    + + FI  +  +   I+ ++     L +++K   + +P +
Sbjct: 1   MKILDKYLLKTFLFTFTTVFVILFFIFILQTVWLFISELAGKDLDLLLVVKFLLFSMPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V P    + +     ++  N E   + ++G S    ++ ++    +LSI  F   N 
Sbjct: 61  IPLVLPLSVLLASIMTFGNLAENYEFAAMKSSGISLQRAMRVLIIFIFVLSIVAFWFANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP--NNTLQGIFIVDS 178
           + P               A     + E  F  +     IK++K +    N L G+ I + 
Sbjct: 121 VIPYAEYKFVNFRKNIAQAKPAMAIAEGQFNDVGT-YNIKVNKKSGENGNILTGVTIHEK 179

Query: 179 RDT--QTHKIYYAQSGSIDLDRQA----IILNDGEVHR-------KSPISKDISIMKFKS 225
            +   +   +  A+ G +    ++    ++LN+G  ++       +           FK 
Sbjct: 180 ANNIGENKTVIKAKDGELISSEKSSILKLVLNNGFYYQDVTPKKYEDRAKLPFIKAAFKK 239

Query: 226 YTLQTESANSSTIV 239
           + +  + +  + + 
Sbjct: 240 HIINIDLSELNKVD 253


>gi|154253776|ref|YP_001414600.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154157726|gb|ABS64943.1| permease YjgP/YjgQ family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 363

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 123/337 (36%), Gaps = 27/337 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y+ R      L++    + + ++I++++ +   +     +  +++ I+   +P + 
Sbjct: 6   TLSRYLGRQFLGVVLLTFGVFIVLIFMIELVELLRRSADKPDVTFGLVVTIALMEVPRIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF            ++RN EL++    G S    I P L +A ++  F+    N +
Sbjct: 66  AQTLPFAVLFGGMAAFLRLSRNNELVVARAAGVSVWQFIAPALAVAFVIGAFVTTVFNPV 125

Query: 122 EPKCRSTIKQLSAK--AQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGI--F 174
                +  +QL +K  ++ A   +     L+ R  D      +   + +    L+ +  F
Sbjct: 126 SATLTTRAEQLESKYLSRQASFVAVSANGLWLRQADSTGQSVVHALRMDDGFRLRRVTIF 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           + D  +  + +   A +  +           ++ DGE  R           K+ +Y  +T
Sbjct: 186 LYDQGNRFSGR-IDAATARLRPGYWELADVWVMMDGEQSR-----------KYDTYRQET 233

Query: 231 ESANSSTIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                      A ++++SF  L                Y+  FH+ L      ++  ++ 
Sbjct: 234 SLTQKQIEESFAREESISFWELPHFIATAEAAGFSARRYQIYFHQLLATP--ALLCTMVL 291

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
           I AA    + R    +  +   +   F +++  +  I
Sbjct: 292 IAAAFSLRVTRMGGLLQMVLGGIFSGFLIYFLGNLAI 328


>gi|149190545|ref|ZP_01868815.1| predicted permease [Vibrio shilonii AK1]
 gi|148835669|gb|EDL52636.1| predicted permease [Vibrio shilonii AK1]
          Length = 356

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 133/357 (37%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  ++Y+ + I  + ++     V ++ VI+ ++++  V   + ++   L      +P  +
Sbjct: 3   RILDVYVGKTIITTIILVLSVFVGLSAVIKFVEQLRSVGEGSYTMLSALYFVILGMPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       + +   L  +  ++EL+++   G S++ +   VL  A+ L + +       
Sbjct: 63  ELFFSMAALLGSLVGLGMLASSSELVVMQAAGISKLRIGLSVLKTAVPLMVVVMALGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P  +   + L  +A    +   +   ++ R  +D +I ISK N  +           + 
Sbjct: 123 APTTQQMARDLRLQATSGGSIVSVRNGVWARDAND-FIFISKVNGESVEGLNIWRFGENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
           Q  +  +A+S     D +  +        K+  +     +  + +         + + + 
Sbjct: 182 QLKETVFAESADYLGDNRWEMHRIQITDMKNDEALSKETLDKQVWETSLVPDKLAIVTVD 241

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
            N+  LS L +          +    Y   F ++ TQ +   +  L++   V    R++ 
Sbjct: 242 LNELPLSGLWDYT-QYLKDSEQDASRYELAFWRKATQPISVAVMMLMALSFVFGPLRSVT 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKI-EQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  +    +  F +   F   +  +   +P +  +    +F   ++ LL  K
Sbjct: 301 MGARILSGVIAGFT--FYISSEFFGPVSLVYGMSPLFGALGPSLVFLTIAMLLLRRK 355


>gi|146313280|ref|YP_001178354.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
 gi|145320156|gb|ABP62303.1| permease YjgP/YjgQ family protein [Enterobacter sp. 638]
          Length = 360

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 129/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   IP
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSIP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   ++ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLMSTQQGLWAKDGNN-FVYIERVKGDDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D   +   L+   E + + P     S     ++          
Sbjct: 181 NDNRRLQSVRYAATAKFDSANRVWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q +   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLMIK 355
                        IS    F V       +  +   P  I  +L    F + S++LL+ +
Sbjct: 300 LRSVAMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPLIGALLPSASFFLISLWLLLRR 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|258544322|ref|ZP_05704556.1| membrane protein [Cardiobacterium hominis ATCC 15826]
 gi|258520402|gb|EEV89261.1| membrane protein [Cardiobacterium hominis ATCC 15826]
          Length = 350

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 126/357 (35%), Gaps = 11/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+LR I  + L++  F++ + +++QI    + +     +L ILL     ++P  
Sbjct: 1   MTRFDRYLLRTILATSLIALAFLLAVDYIVQISVDADDLGQGNYTLAILLLQLLLVLPEK 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L + TP    + T   L  +    E+ ++   G SR+ L +  +  A+++ +   ++   
Sbjct: 61  LLLYTPAAVLIGTIMGLGQLAAQNEIAVVRAAGISRLRLARAGIAFALIVGVLNIVNGET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + L  +A    +    E+ ++ +   + +I I   NP+ +L  I      D
Sbjct: 121 LAPQLADRSRLLRNQALGQSSDPGREQGIWLK-QQNTHIHIGALNPDGSLARIR-SYYSD 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
             +  I  A   +       +        R     +  +   +++          S +  
Sbjct: 179 ADSITISEADRATWQAPDWQLENPRAWRTRADKTERLTAPESWQNGATPQALHALSAVKS 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               + L  L      N     +          +RL   L      L+++         R
Sbjct: 239 AETLRELYTLTRFMAANGLNHQQQSLK----LWQRLLTPLTTAAMVLLALPF--TFGNAR 292

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLLMI 354
             ++   +   + +    +     I +        P     L + +F +  + LLM 
Sbjct: 293 SGQQGTRLVTGILLGVAYYVISGVIANLALLLHWPPLLGAALPILIFTLPPLILLMR 349


>gi|301310576|ref|ZP_07216515.1| putative membrane protein [Bacteroides sp. 20_3]
 gi|300832150|gb|EFK62781.1| putative membrane protein [Bacteroides sp. 20_3]
          Length = 361

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 125/360 (34%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   +    L  I++      IP 
Sbjct: 5   LKRIDWYIIKQFLGTYVFAIALIISISVVFDINEKIDKFLNPDVPLKAIIVDYYLNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +  +G S   L+ P    A +++I  FI   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADRSEIIAMLASGMSFRRLMLPYAVSATIIAIVTFILNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P    T      K        Y++      ++  +      Y+  + +   F +   
Sbjct: 125 YIIPPANETRIDFQNKYIRNKKVDYVKNAQ-LEIEPGIIAYFDSYDARSNMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A+S   D   Q   + D  +     + + I     K  TL    ++    
Sbjct: 184 EDKKLISRLTAKSIKYDSLYQ-WTVIDYMIRDFDGMREHIFQGSRKDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V          L              ++T++ E+HKR    +   I   I   +   R +
Sbjct: 243 VNDCETMTTPELNTYINRQKKRGIGNIQTFQIEYHKRFATIMAAFILTSIG-ASLSSRKI 301

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
                    I ++LS S   +  F  +      N Y  P +  ++     + I + + +K
Sbjct: 302 KGGMGMNIGIGLALSFS---YILFMTVTSTFAINGYVSPAVAAWIPNIVYTFIAIFLYQK 358


>gi|332665471|ref|YP_004448259.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334285|gb|AEE51386.1| permease YjgP/YjgQ family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 365

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 115/357 (32%), Gaps = 6/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    +F  + L  + IA ++   +++        +   I+L+     +  +
Sbjct: 6   KILDWYIIKKFLSTFFFTVLIFLMIAVILDFSEKVEKFIEEPITTREIVLQYYPSFMLWI 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              +   C  +      + M  ++E++ I N G S   L++   F A  L++   +  + 
Sbjct: 66  GGQLWSVCTLIAVIFFTSRMAYSSEIMSIFNAGVSFNRLMRSYFFGAAFLTLLYLLCTHY 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-YNPNNTLQGIFIVDSR 179
           I P      + +  K            N+   +  +  + I      ++T +   I   +
Sbjct: 126 IMPVGEKYRQDIVHKYIDKSDDKGKTTNIHLFVAPNTKVFIGFYRKDDSTARDFRIEHFK 185

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTESANSST 237
           + Q      A       + +   L D   H  + + +D+ +   + K  TL     +   
Sbjct: 186 NQQLVSYTKADRAEYLPETRKWRLWDYSSHSFNGLKEDLKMHLAESKDTTLSLYPEDFVD 245

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              + +      L+                Y  E ++R    +   I   I +  A    
Sbjct: 246 YSSQQSMMTTPRLMKYIRQQNERGASNTRKYLFELYRRTADPVTIFILTFIGMAIA--SR 303

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            VR     H        +  VF      +  + Q        +L     + + L +I
Sbjct: 304 KVRGGFGFHLALGIGVGAIFVFLSKFTNVFALGQTIPVWLGAWLPNLVFAFVALRLI 360


>gi|94984156|ref|YP_603520.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94554437|gb|ABF44351.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 352

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 110/364 (30%), Gaps = 28/364 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +    +LR + R +       + +     +   + ++     +    L + G + P  L 
Sbjct: 7   TLTRSVLREVLRWYAAGVALFLILQLTDALSTTVGVLLLYHATPLEALSVFGAIAPDKLN 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                            +  ++EL  +   G S + L+ P+    +L+ +  F++   + 
Sbjct: 67  RSLVLAVPFAVLLTFGRLQGDSELKAMFAAGVSPLRLVWPLAVPFVLVGVLAFVNTGYVV 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-----LQGIFIVD 177
           P   +   +        +  +  ++N +            +           L G+ I  
Sbjct: 127 PGGLARWDRAWYTIYGTVPPAPSQDN-YTFAPPGALFYAGRVRNGAESGVAQLDGVLI-- 183

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSS 236
               +  +   AQSG  D   +   ++D  + R     + ++  + F       ++    
Sbjct: 184 ---ERGGETVTAQSGIWDTQARTWTVSDAWITRPGQDPRQVAGPLVF------PQTDTLR 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                A   +   L      +    PE       +   R      P++F L++ V     
Sbjct: 235 PPQPPAAQVSTPVLRARLAADEYATPEQRRVDEHQLATRYADPCTPIVFALVAGVVGLL- 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLL 352
                 +     F +  +   VF+       ++ +     P L  +L    F + +  L 
Sbjct: 294 -----LRNRAGAFAATLLVILVFYVLWTTAPQLARVGALPPTLAAWLPNIVFFLVAAALA 348

Query: 353 MIKK 356
              +
Sbjct: 349 WRLR 352


>gi|261342655|ref|ZP_05970513.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
           35316]
 gi|288315303|gb|EFC54241.1| membrane protein, YjgP/YjgQ family [Enterobacter cancerogenus ATCC
           35316]
          Length = 360

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 128/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI R I   F    + +  +  +  I++ ++ +  + +     +     +   +P
Sbjct: 5   GVLDRYIGRTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDAMGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   ++ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + +A S   D + +   L+   E +   P     +     ++          
Sbjct: 181 NNERRLQSVRHASSAKFDAEHKQWRLSQVDESNLTDPKQITGTQTVTGTWKTDLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S+++L+ +
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFLLISLWMLLRR 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|237718555|ref|ZP_04549036.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293373071|ref|ZP_06619439.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|299145713|ref|ZP_07038781.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|229452015|gb|EEO57806.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292631957|gb|EFF50567.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|298516204|gb|EFI40085.1| putative membrane protein [Bacteroides sp. 3_1_23]
          Length = 365

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 134/369 (36%), Gaps = 26/369 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +   + S ++      +D  +   I  YN        F +
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNVQ----LEVDSGVIAYIDNYNNAMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  V     + +   I K            
Sbjct: 183 DKFVDKKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEK--ITKGDRIDSIINMEP 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFGLIS 289
           S  +++K   + L+   +P  ++   + +         +  E+HKR+       I  +I 
Sbjct: 241 SDFLIMKNQQEMLT---SPELSDYIVKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIG 297

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCIS 347
           +     R           I + LS S   +  F  I      N    P + +++     +
Sbjct: 298 VS-LSSRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAVNGNVPPAVAVWIPNILYA 353

Query: 348 SIFLLMIKK 356
            I   + +K
Sbjct: 354 GIAFFLYQK 362


>gi|332829399|gb|EGK02053.1| hypothetical protein HMPREF9455_00175 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 365

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 125/363 (34%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ S + I+ IA V  I ++++        L  I+       +P 
Sbjct: 4   LSILDRYIIKKFLGTYIFSIILIISIAVVFDINEKLDKFLDKKAPLTAIIFDYYVNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ + + G S   L+KP +  A ++++F F+  +
Sbjct: 64  YTNLFSALFVFIAVIFFTSKLADNSEIIAMLSNGMSFKRLMKPYMISAGIIAVFSFVLSS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
            I P    T  +   K     +  Y    +  ++D  + + I +++        + +   
Sbjct: 124 FIIPPANVTRIKFQNKYVRDKSVEY-ASGIQLQVDKGVILYIERFDNKTKEGYNLSLDKI 182

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      AQ    D       L + ++     + + IS       TL    ++    
Sbjct: 183 EDKELKSRLTAQRIKYDSAY-HWELYNYKIRELQGMREVISNGDKIDTTLNVVPSDFLIS 241

Query: 239 VLKANDQNLSFLL-----NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           V          L        +          +  +  EFHKR        I  +I   + 
Sbjct: 242 VNDFEQMTTPVLYKYIQRQRDKGIATVGDVSITQFEIEFHKRFASVFSAFILTIIG-ASL 300

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R +         I + LS+S+ +F   S         P ++ +    L  ++    L 
Sbjct: 301 SARKVKGGMGLNIGIGLGLSVSYIMFQTVSSSFAVSGTMPAWLAVWIPNLVFMAIAAYLY 360

Query: 354 IKK 356
            + 
Sbjct: 361 SRA 363


>gi|328950000|ref|YP_004367335.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450324|gb|AEB11225.1| permease YjgP/YjgQ family protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 378

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 112/360 (31%), Gaps = 40/360 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     F    L  V +  +  +L R   +         L++   Y +P V
Sbjct: 1   MTRLDRYILREAFPPFAFGLLLYVGLILLSNLLGRAQWLV--GVEFWGLVRWLWYQVPFV 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T      ++R  ELL+I   G   +   + +   A +L          
Sbjct: 59  LNQTLPVAVLLATLLAYGRLSRENELLVIQAGGLPLLRTARWLFVAAFVLVGVSLYMSET 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P+       L      +              +                + G+ + +  
Sbjct: 119 LIPRANERAAVLWWDELTSKGNGLARLAGQDVPVGPYRLFFARYDYRTKEMVGVRL-ELW 177

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +T  + +A  G ++ +R  ++       + +     + +  F S  L+    +   +V
Sbjct: 178 QGETLAVIFADRGRLEENRLRLV----NFRQYTLDLTRLPLPDFAS--LEEAEQHLRRLV 231

Query: 240 L-----KANDQNLSFLL---------------NPNPNNPNYRPELLET----------YR 269
                 +   + L+ LL                 + N  +Y  E ++            R
Sbjct: 232 RMQNVARDPSRTLTVLLPKTRSQLLAQHGGGGFEDANPISYWYERIQKTVNSPREHLEAR 291

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
            +FH  L      ++  ++++  A ++A        + + +++        G    ++ +
Sbjct: 292 VQFHSMLAVPFANLVVLVLALPIAVRKAGSTGLAFGYSLIVTIGYYLVFTLGKLLALNGV 351


>gi|325473492|gb|EGC76687.1| membrane protein [Treponema denticola F0402]
          Length = 357

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 124/363 (34%), Gaps = 10/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+L+    +F+++ LF V +  +  +   I     +      ++K+    IP  
Sbjct: 1   MRLLQRYLLKLFIPTFVVAMLFFVLLLQLGDLFANIVAYLQNGAQFKDIVKVMWLYIPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P       +  + ++    EL  I + G S      P+L L    S+ +   E+ 
Sbjct: 61  IAYSVPLAILFAGSYTMGNLYAQNELTSIFSAGISLGRFTLPLLVLGFFFSVGMIFFEDN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           +  K      QLS K          ++ +       +      +N  N TL   +I+  R
Sbjct: 121 VVIKYFYEKTQLSKKLLQEEESLDTQDLVILSELGKIVYTADYFNAENQTLANAYII-VR 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D   +     +S  +  +      +  EV+R    +    +       + +E   +    
Sbjct: 180 DEDGNLSLVIKSSHMVWNEDRWTTDSAEVYRFDEKNSVSCLNNIPDNIILSEPPANFQKN 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L + D+                        S++H+R +      I    SI    K    
Sbjct: 240 LSSVDEMRISEAKEFIAALKKNGLPYYEALSKYHRRFSFPFTIFIVLFFSISLGGKF--- 296

Query: 300 RQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLMIKK 356
             +K I  + I  S+    +F+    +     +  Y  P+   +  +F  S + + ++KK
Sbjct: 297 --KKNILLMSILFSLGIATLFYVTEMVTMLSAKWEYISPLAGAWTPIFIFSILSVYLLKK 354

Query: 357 KYT 359
             T
Sbjct: 355 SRT 357


>gi|86133725|ref|ZP_01052307.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
 gi|85820588|gb|EAQ41735.1| predicted permease YjgP/YjgQ family [Polaribacter sp. MED152]
          Length = 363

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 131/373 (35%), Gaps = 27/373 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES--LNILLKISGYLIP 58
           MK  + YIL+    +FL + L ++ IA  I I ++I+      +   L I+ +     I 
Sbjct: 1   MKILDWYILKRFLVTFLFTLLILIPIAIAIDIAEKIDNFLEHQDLGFLQIVDEYYINFII 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
                  P    +      + ++ NTE++ I+N   S    + P    A L+++      
Sbjct: 61  YYANTFMPLALFIAVILFTSKLSNNTEIIAINNAKISFTRFLFPYFIGATLITLLSLAMN 120

Query: 119 NIIEPKCRSTIKQ----LSAKAQLALTFSYLEENLFF-RLDDDLYIKISKYNPNNTLQGI 173
           + + P      K+         +    F Y+ +  F  +L D  YI I  +N  +     
Sbjct: 121 HFVVPSSSKIRKKFELTYIKNKRQNQEFKYISD--FSLQLTDSTYIFIRNFNTQSNAGYD 178

Query: 174 FIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-E 231
           F  +  D         A +   +       L +  + +       I    F    + T  
Sbjct: 179 FTSEVYDGLTMKSKLVADNIRYNDKDSTFALQNWRLRKIYDDKDSI----FSGNKIDTVF 234

Query: 232 SANSSTIVLK---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           +     ++ K   + +     LL     +     + L  Y  EFHKR +  +   +  +I
Sbjct: 235 NFTPRDLIYKSALSQEMPSDELLKFIEISEKRGVKNLNAYLVEFHKRTSLPIASYVLTII 294

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY----YIPILYLFLF 344
           ++  A      R+R+    + +++ +     + F   I ++         +I +    +F
Sbjct: 295 AVALA-----FRKRRGGTGVNLAIGVGMMFIYVFLLKISEVLGAVAGVNSFIYVWMPNIF 349

Query: 345 CISSIFLLMIKKK 357
             S    L +  +
Sbjct: 350 FGSIALYLYLNAR 362


>gi|297184152|gb|ADI20271.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 374

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 111/332 (33%), Gaps = 20/332 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL     SF ++ + I+ IA V  I ++++   +      I+       I   
Sbjct: 1   MNKLDRYILLKFIGSFFLTMVLILSIAVVFDISEKLDDFQNGASMNEIIFDYYINFIAFY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     + T    + M  N+E++ I  +GTS   L++P    A ++        ++
Sbjct: 61  GNLFSALILFISTIWFTSRMASNSEIVAILTSGTSFRRLLRPYFIGASIICALSLTLNHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQGIFI 175
           + P+     +    +  +      + + +  ++    Y+        + +       +F 
Sbjct: 121 LVPQTNIK-RIAFEEKYVTGVNRPISQKMHRQVLPGHYVYFETFSGVRESGYQMTYEVF- 178

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS---YTLQTES 232
               D Q      A    +D       L++  +        +   + F       L   S
Sbjct: 179 ---EDHQLKSKLSADFVRLDTATGRWRLDNFRLRTLDEKGGE--QISFGRRMDTALAFTS 233

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +  +      N   L            E + +Y+ E  +R +  +   +F L+++  
Sbjct: 234 EQIAPKLNSIATMNSKELSRFIAQEELTGNENIASYQMEMQRRTSYPVSSYVFVLLAV-- 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
                  ++++    I I++ +     + F  
Sbjct: 292 ---GLASQKKRGGLGINIAIGLVLTAIYIFFM 320


>gi|150025640|ref|YP_001296466.1| hypothetical protein FP1590 [Flavobacterium psychrophilum JIP02/86]
 gi|149772181|emb|CAL43657.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 484

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 98/254 (38%), Gaps = 16/254 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    SF    + ++FI  +  +   I+ ++     L ++LK   + +P +
Sbjct: 1   MKILDKYLLKTYLTSFFGVFIILIFIFILQTVWLFISELAGKDLDLILILKFLLFKMPGL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P+V P    +        M  N E   + + G S    +K + F   LLSI  F   N 
Sbjct: 61  IPLVLPLSVLLSAIMTFGDMAENYEFAAMKSAGISFQRTMKGLTFFIFLLSIGAFFFANN 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDS 178
           + P                     + E  F  +  ++ IK++K +  N   L+G+ I   
Sbjct: 121 VIPYAEFKFNNFRKNIAQVKPAMAIAEGQFSTI-GNINIKVNKKSGTNGEFLEGVTIHKK 179

Query: 179 RD--TQTHKIYYAQSGSIDLDRQ----AIILNDGEVHR-------KSPISKDISIMKFKS 225
            D       +  ++SG +    +     ++L DG  +        +       + + FK 
Sbjct: 180 SDLGEGAKTVIKSKSGQLISSEESSLLQLVLIDGYYYEDITPKSYEDRQKMPFAKVNFKR 239

Query: 226 YTLQTESANSSTIV 239
           YT+  + +  + + 
Sbjct: 240 YTINIDLSKLNKVD 253



 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           + +Y+ + + ++    +++       ++   I    A   A++R+     PI  ++ I F
Sbjct: 351 SLDYKKKDINSFWISIYEKFVIAFACILMFFIG---APLGAIIRKGGLGLPIVFAMLI-F 406

Query: 317 GVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
             F   +    K+ Q     P L  ++  F +  + + + +K
Sbjct: 407 ITFHFLNTFGKKVAQESGMAPFLGAWISFFLLVPLAIFLTRK 448


>gi|294788100|ref|ZP_06753344.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
 gi|294484393|gb|EFG32076.1| permease, YjgP/YjgQ family [Simonsiella muelleri ATCC 29453]
          Length = 355

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 135/365 (36%), Gaps = 15/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+++ +      + L ++ +   I +L  I  V     +     K     +P  
Sbjct: 1   MKLLTKYLIKRLTVMSCYALLAVLALYSFIDLLSEIGNVGKGNYTGWTAFKYIIMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ ++ ++EL +I  +G S   +I+ +L  + + ++   +    
Sbjct: 61  AYQLMPLATLIGGLLALSQLSSSSELAVIKTSGLSTADIIRIILKFSAIFALATILLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+       +   A+ +   + +   L+ R  +++ + I+   P+NTL  I I    +
Sbjct: 121 LAPELGRRADAMKTTAKESSITASVT-GLWLRQGENI-VNIAAMLPDNTLTNIRIW-RYN 177

Query: 181 TQTHKI--YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            Q        A+   +   +   +L + ++ + +    +I  +K  ++         + +
Sbjct: 178 PQFELTEAIIAEKAQVHDGK--WVLQNAKISQLTNKHINIQHIKQMNWQTNINQNLLNVL 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V+K    + S L            +    Y   +  +L   +  ++  L+++        
Sbjct: 236 VVKPEQMSFSALTR-YIKYLKKNQQQTSAYDVVWWNKLVYPIATMVMSLVALAF--TPNS 292

Query: 299 VRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R       +F  + +    F+    F +         ++  IL    F + +++L  I 
Sbjct: 293 ARHSNMGLKLFSGICLGLLFFFTGRLFGFTTQLYGVPAFFSAILPTATFALWAVYL--IH 350

Query: 356 KKYTK 360
           K+ T+
Sbjct: 351 KQETR 355


>gi|254672902|emb|CBA07219.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 210

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 3/200 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + A A      +     ++ + + +  I + +  P++TL GI I    D
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GIWLK-EKNSIINVREMLPDHTLLGIKIWARND 178

Query: 181 TQT-HKIYYAQSGSIDLDRQ 199
                +   A S  ++ D  
Sbjct: 179 KNELAEAVEADSAVLNSDGS 198


>gi|310766280|gb|ADP11230.1| Inner membrane protein [Erwinia sp. Ejp617]
          Length = 358

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 126/362 (34%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +    +L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+  +  +    +  L+ +  D+ +I I +   +N L GI I + 
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDN-FIFIERIRDDNQLSGISIYNF 178

Query: 179 RDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
              +  K   YA S   + D++   L   +    S   +   S      +          
Sbjct: 179 DHERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L     ++S L + +        ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVALDPGALSISGLYSYSK-YLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  +  L L      +I L M+ K
Sbjct: 298 LRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGAL-LPSAAFFAISLAMLVK 356

Query: 357 KY 358
           + 
Sbjct: 357 RR 358


>gi|260754017|ref|YP_003226910.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553380|gb|ACV76326.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 364

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 18/345 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL---QRINLVSSSTESLNILLKISGYLIP 58
           +    Y+ +            ++FI   + +L    RI  V  + ++   L        P
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQA--ELFHYVLLRTP 66

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  
Sbjct: 67  QLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFN 126

Query: 119 NIIEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIF 174
           + +  +  + +    A         +    N++ R  D L I +           L GI 
Sbjct: 127 DHLVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHL-IHVDNVQGYGDNVRLSGIT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +        I  A +G        +     +V      +  ++               
Sbjct: 186 VYNRSQKTLVSILSADTGQWTGHGWHLN----KVKSFDVAADTVTEKSVLDINTDLPPER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +   +KA++  +  L        +      +  ++    R T     ++  ++  VA  
Sbjct: 242 FTLADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGF 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              L R  +    I I +S+ F  F   ++ +  +     Y P+L
Sbjct: 301 G--LARSGRLFVRIVIGMSLGFAYFVADNFAL-AMGNLGTYPPLL 342


>gi|160884582|ref|ZP_02065585.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
 gi|260174906|ref|ZP_05761318.1| hypothetical protein BacD2_23825 [Bacteroides sp. D2]
 gi|315923149|ref|ZP_07919389.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110321|gb|EDO12066.1| hypothetical protein BACOVA_02569 [Bacteroides ovatus ATCC 8483]
 gi|313697024|gb|EFS33859.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 365

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 134/369 (36%), Gaps = 26/369 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALVTFTLSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +   + S ++      +D  +   I  YN        F +
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNVQ----LEVDSGVIAYIDNYNNAMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  V     + +   I K            
Sbjct: 183 DKFVDKKLVSHLTARRITYDTTTVHKWTIHDYMVRELDGLKEK--ITKGDRIDSIINMEP 240

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-----TYRSEFHKRLTQWLFPVIFGLIS 289
           S  +++K   + L+   +P  ++   + +         +  E+HKR+       I  +I 
Sbjct: 241 SDFLIMKNQQEMLT---SPELSDYIAKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIG 297

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCIS 347
           +     R           I + LS S   +  F  I      N    P + +++     +
Sbjct: 298 VS-LSSRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAVNGNVPPAVAVWIPNILYA 353

Query: 348 SIFLLMIKK 356
            I   + +K
Sbjct: 354 GIAFFLYQK 362


>gi|270157966|ref|ZP_06186623.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
 gi|289163767|ref|YP_003453905.1| membrane protein [Legionella longbeachae NSW150]
 gi|269989991|gb|EEZ96245.1| putativeYjgP/YjgQ family permease [Legionella longbeachae D-4968]
 gi|288856940|emb|CBJ10754.1| putative membrane protein [Legionella longbeachae NSW150]
          Length = 356

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 120/361 (33%), Gaps = 11/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI + +  S  +  L ++ +   I  + +I+ +      +          +P  
Sbjct: 3   MKILDRYIAKTVIGSIGLVTLMLIGLQIFILFVDQISDLGRVDYGIVQATFFVMLQMPYQ 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    + T   L  +  ++EL+I+  +G S   +   VL  ++LL IF+ +    
Sbjct: 63  VYLFFPMASLLGTLIGLGILANHSELVIMRASGMSIGQITVAVLKASVLLIIFVTVLGET 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDS 178
           + P            A          +  + R ++D +I +     NN L  I  F  D+
Sbjct: 123 LVPYLSHYANDYKTAAISGGQTLRTSKGFWLRYNND-FISVGVVLSNNVLNNIYQFRFDN 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--S 236
           +       +  +   +       I  D  V +            F S            +
Sbjct: 182 QHHLKMSRFIRE---VRHTPTGWIAYD--VQQTEFGGDQTKAQAFASLPWDVSVKPKILT 236

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              +  ++ NL  L N          + +  Y+  F +RL Q    ++  ++SI      
Sbjct: 237 ISSIDPDEMNLREL-NRYIRAQKLNHQNIHNYQFAFLQRLIQPFTTMVMMILSIPFIFGP 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                      +  ++  SF +   F   +  + Q P  +  L   +        LM + 
Sbjct: 296 LRSTTMGSKLLVGAAVGFSFHILNRFFGPLSTVFQLPPELSALGPTVIFALLGLYLMKRV 355

Query: 357 K 357
           +
Sbjct: 356 R 356


>gi|237713241|ref|ZP_04543722.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406619|ref|ZP_06083168.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646169|ref|ZP_06723825.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294807861|ref|ZP_06766643.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298484045|ref|ZP_07002214.1| membrane protein [Bacteroides sp. D22]
 gi|229446708|gb|EEO52499.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355322|gb|EEZ04413.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638498|gb|EFF56860.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294444923|gb|EFG13608.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084257|emb|CBK65780.1| Predicted permeases [Bacteroides xylanisolvens XB1A]
 gi|298269826|gb|EFI11418.1| membrane protein [Bacteroides sp. D22]
          Length = 365

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 130/364 (35%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIALTTFTLSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K +   + S ++      +D  +   I  YN        F +
Sbjct: 127 YVIPKGSVTRLNFEDRYIKPKKQNSVSNVQ----LEVDSGVIAYIDNYNNAMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  V     + + I+        +  E ++
Sbjct: 183 DKFVDKKLVSHLTARRITYDTATVHKWTIHDYMVRELDGLKEKITKGDRIDSIINMEPSD 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +  +        L +            ++ +  E+HKR+       I  +I +    
Sbjct: 243 FLIMKNQQEMLTSPELSDYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVS-LS 301

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLL 352
            R           I + LS S   +  F  I      N    P + +++     + I   
Sbjct: 302 SRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAVNGNVPPAIAVWIPNILYAGIAFF 358

Query: 353 MIKK 356
           + +K
Sbjct: 359 LYQK 362


>gi|262045293|ref|ZP_06018318.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037349|gb|EEW38595.1| YjgP/YjgQ family membrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 360

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 125/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  S +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGSGLYTILSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++   G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQAFGFTRLQVALAVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+     +    ++ L+ +   + ++ I +   N+ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHN-FVYIERVKGNDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA S   D + +   L+   E     P     S M   ++          
Sbjct: 181 NPERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++L+M K
Sbjct: 300 LRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRK 359

Query: 356 K 356
            
Sbjct: 360 A 360


>gi|85060085|ref|YP_455787.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
 gi|84780605|dbj|BAE75382.1| putative transport protein [Sodalis glossinidius str. 'morsitans']
          Length = 356

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 118/357 (33%), Gaps = 5/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + +M+   +V ++ +I+ ++++  V     S       +   IP  +
Sbjct: 3   GVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVEQLRKVGQGGYSALGAGLFTLLSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L S+   +EL+++  +G SR+ +   V+  AI L +        +
Sbjct: 63  EIFFPMSALLGALLGLGSLATRSELVVMQASGFSRMQVAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P           +     +    +  L+ +  +D +I I +   ++ L G+ I      
Sbjct: 123 APAGEQMAYNYRTQMIYGGSMLSTQNGLWAKDGND-FIFIERVVGSDELAGVNIYHFDKA 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                + YA + +       +   D               +    +           + L
Sbjct: 182 DRLQSLRYAATATFSNGSWKLSQVDESDLTNDKQITGRQTLN-GEWKTNLTPDKLGVVAL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + N  ++S L N   N      +    Y+     ++       +  L+++          
Sbjct: 241 EPNSLSISGLYN-YVNYLKQSGQESNRYQLNMWSKIFSPFSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKK 356
                  I IS    F V       +  +    P +  +L    F I SI +L+  +
Sbjct: 300 PMGVRVVIGISFGFLFYVLDQIFGPLSLVYNMPPVFGALLPSMAFLIISIVMLLRCR 356


>gi|300718540|ref|YP_003743343.1| permease [Erwinia billingiae Eb661]
 gi|299064376|emb|CAX61496.1| putative permease [Erwinia billingiae Eb661]
          Length = 358

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 130/361 (36%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTALGAGLYTVLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD- 177
             + P+     +   A+  +  +    +  L+ +  D+ +I I +   N+ L GI I   
Sbjct: 120 EFVAPQGEQMARNYRAQQLVGGSLLSTQNGLWAKDGDN-FIFIEQIKDNSELSGISIYSF 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS-PISKDISIMKFKSYTLQTESANSS 236
           +++ +   + YA S   ++D++   L + +    + P     S      +          
Sbjct: 179 NKERRLETVRYAASAKYNVDKKRWDLAEVDQSNLTDPKQVTGSQTLSGEWKTTLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVALDPDALSISGLYN-YVKYLKQSGQVSSRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V       +  +    P    +L    F   S+++L+ +
Sbjct: 298 LRSVSMGMRVVTGISFGFIFYVLDQIFGPLSLVYNIPPIMGALLPSGAFFAISVYMLLKR 357

Query: 356 K 356
           +
Sbjct: 358 R 358


>gi|251771422|gb|EES52001.1| permease YjgP/YjgQ family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 361

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 117/354 (33%), Gaps = 7/354 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    +I+    + + +S + +  I  VI  +++I    +     +++ +   +    V
Sbjct: 1   MKILTRHIMGEYIKIYFLSLVSLEAIYLVIDSVEKIKSFLAHHAPWSLMGEFFAWRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L   ++N E+  I   G S      P++    LLS+   +    
Sbjct: 61  GFRVIPMSALLATILALGIASKNHEITAIRAAGISLGKATFPIVLFGALLSLIELLLNLW 120

Query: 121 IEPKCRSTIKQLSAKA--QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P    T   +  +   Q +     +  N++FR       +I+K     T      +  
Sbjct: 121 VVPHAYQTTDVIMEERINQGSGWSGEVRRNVWFRHGSREIFRIAKIEQGGTRLDTVTIYH 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  +    +  ++ ++  +    + +DG           +S   F +     +   +   
Sbjct: 181 KSPKADLQWTIEAKTLLYENGGWVFHDGVRTLFHKD-GTLSSESFATLPFPLDRRPADFF 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR-LTQWLFPVIFGLISIVAADKRA 297
           + K +  +L++       +      L     +      L       +  L +I       
Sbjct: 240 IRKTHLSHLTYAELSRTIDLLKANGLPHKNFTVLRDGVLAFPAASFLMVLFAIPFGI--R 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             RQ        ++L +S   +W    +   + +     P+L  +   +  + +
Sbjct: 298 EGRQVGIARGFGVALMLSLS-YWTLYSMGLALGRGGVIPPLLAAWFANLVVLAV 350


>gi|283954397|ref|ZP_06371917.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794014|gb|EFC32763.1| hypothetical protein C414_000220013 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 341

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 120/327 (36%), Gaps = 20/327 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIQISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S  + +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISALMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MIPIVF-ELQDNFVNYKSIQVKFNYKTGEFGQKFLDWMIFIEKQD-SGKYENIIMYHPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+    +
Sbjct: 179 KADDKEQLIIAKEAHVQRKDDGFAFSLNQGKMYNFDQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  +           N+ N  P+    +        T  LFP+   L ++      
Sbjct: 238 LQTKKFYEYW---------NDLNENPQRAREFVIYA----TIALFPLASTLFALCFGLVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS 323
               +      +F  ++I FG+   FS
Sbjct: 285 YRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|253686793|ref|YP_003015983.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753371|gb|ACT11447.1| permease YjgP/YjgQ family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 358

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 125/360 (34%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   ++     +    +  L+ +  +D +I I +   +  L G+ I    D+
Sbjct: 123 SPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND-FIYIERVAGDKELSGVNIYHFDDS 181

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
                  YA S   + DR    L+  +    S   +   S      +           + 
Sbjct: 182 NKLLSVRYAASAEFEDDRNVWRLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ +  ++  L N          +    Y+     ++   +   +  L+++        +
Sbjct: 242 LEPDALSIRGLHN-YAKYLKQSGQESSRYQLNMWSKIFAPVSVAVMMLMAVSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +S  F  +     F  +       P    IL   +F   S+ LL+ ++
Sbjct: 299 RSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLCISVALLLKRR 358


>gi|226227979|ref|YP_002762085.1| hypothetical protein GAU_2573 [Gemmatimonas aurantiaca T-27]
 gi|226091170|dbj|BAH39615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 362

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 120/361 (33%), Gaps = 16/361 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YI     R F ++ L    + +VI ++  +   +        +     Y IP  L M
Sbjct: 9   LDRYIATEFTRIFGVTILGFPVLVFVIDLVDNLRKYTERKLPAKAVALSYFYWIPDTLFM 68

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           V P      T   + +  R +E+     +G S    I P+L +A L          I  P
Sbjct: 69  VLPAAVLFATVFSIGTFTRYSEITAAKASGISFYRFIAPILVMATLALGLDLAFGEIAPP 128

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS-RDTQ 182
                +  L   +       Y     F      +Y   +    +  +  I I     D +
Sbjct: 129 ANAIRLDLLEGTSSSRANDRYNFA--FASDRGRIYRIYTLNVRDKAVDNIEIEARGSDKK 186

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +  A+    +  R+   L+ G VH     ++D   + F   +L     + +   L+ 
Sbjct: 187 PGMVVAARRAKWNDARRDWRLDSGVVHIIPDRTRD---IAFSFDSLIDRDFHETPAELRT 243

Query: 243 NDQNLSFLLNPNPNN----PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            +++ S +   +              + T + E   R+ +   PV   +I++  A     
Sbjct: 244 TERDPSEMRFADLTRFITVLERSGADVNTLKVE---RMLKIAIPVTCLIIALFGAPLATS 300

Query: 299 VRQRKKIHPIFISLS---ISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            ++    + I +SL+   +   +      I  K    P     +   +  + +I LL   
Sbjct: 301 SQRGGAAYGIAVSLATTVLFLLLIQLTKAIGGKGIVEPELAAWIPNAVVGLFAIVLLSRV 360

Query: 356 K 356
           +
Sbjct: 361 R 361


>gi|237710072|ref|ZP_04540553.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456165|gb|EEO61886.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 365

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 130/346 (37%), Gaps = 10/346 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  ++YI++    ++  +   I+ IA V  + + I+   ++   L  I+       IP  
Sbjct: 8   KRLDIYIIKKFLGTYFFAIALIISIAVVFDVNENIDRFINNKAPLKAIVFDYYMNFIPYF 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ + +TG S   +++P +  A ++S+  F     
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIISVVTFGLGAY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK   T      + +      Y+  N+   +D  +   I +Y   N     F +D  D
Sbjct: 128 VIPKGNVTRLDFEDRYKKKKKQEYVR-NVQLEVDSGVIAYIERYENYNKTGYRFSLDKFD 186

Query: 181 TQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +    +  A+S + D            + R+    ++  I +        +      ++
Sbjct: 187 DKKLVAHLTARSVTYDTASVHKWTIKNYMIREMEGMRE-KITRGDRLDTIIKMEPQDFLI 245

Query: 240 LKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +K   Q ++   L              ++ +  E+++R+       I   I +  + ++ 
Sbjct: 246 MKGQQQTMTSPELKEYIDKQKRRGFANIKEFEIEYYQRIAMSFAAFILTTIGVSLSSRKM 305

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              +      + + L++SF  +  F  +      N    PI+ +++
Sbjct: 306 ---KGGMGLHLGVGLALSFS-YILFQTVSATFAVNGNTPPIIAVWI 347


>gi|323496139|ref|ZP_08101199.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
           21326]
 gi|323318883|gb|EGA71834.1| lipopolysaccharide ABC transporter permease [Vibrio sinaloensis DSM
           21326]
          Length = 356

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 140/360 (38%), Gaps = 13/360 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  +LYI R I  +  M    ++ ++ +I+ ++++  V   +  L          +P  +
Sbjct: 3   KILDLYIGRTIIATTTMVLATLIGLSGIIRFVEQLRSVGRGSYDLLHAFYFVVLGVPRDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M       +     L  +  ++EL+++  +G S++ +   VL  A+ L + + +     
Sbjct: 63  EMFFAMSALLGALIGLGMLASSSELVVMQASGYSKLDIGISVLKTAVPLMLIIMLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ-GIFIVDSRD 180
            P+ +   ++L + +        +   ++ R  DD +I I K   +N     ++  D  D
Sbjct: 123 APQAQKMARELRSFSISGGQIVSVRAGVWARDADD-FIFIGKVEDDNLYGLKVWRFDE-D 180

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + +++ +A       + Q  +L D ++   +    +++    + Y   T        V+
Sbjct: 181 KKLYQVLFAPEADYQGNNQ-WLLKDTQITDMADRV-ELAKSTVREYNWHTTLVPDKLAVV 238

Query: 241 K--ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKR 296
           K    +  +S L +          +    Y     +++TQ     +  L++   V    R
Sbjct: 239 KVEPEELAMSGLYD-YVTYLKESEQDSSRYELALWRKVTQPFSIAVMMLMALSFVFGPLR 297

Query: 297 ALVRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           ++    + +  +    +      F+G   +++ I   P +  I+   +F   +I LL  K
Sbjct: 298 SVSMGARILSGVVAGFTFYISSEFFGPLTLVYGIP--PVFGAIMPSIVFLTIAILLLRRK 355


>gi|57167826|ref|ZP_00366966.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
 gi|57020948|gb|EAL57612.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter coli RM2228]
          Length = 341

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 128/361 (35%), Gaps = 23/361 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   +   LLK+ G+++P +
Sbjct: 1   MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFADLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   +
Sbjct: 61  LIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++      +        +   F +   +  I I K   +     I     R+
Sbjct: 121 MIPIVF-ELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRN 179

Query: 181 -TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                ++  A+  +   +    A  L++G+++      + + I  F    + T+  + + 
Sbjct: 180 IEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFE-NGQTLFIGNFDKLIVNTQFNDQNL 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K  +           N+ N  P+  + +        T  LFP+   L ++       
Sbjct: 239 QTKKFYEYW---------NDLNTNPKRAKEFVIYV----TIALFPLASTLFALSFGIVTY 285

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +      +F  +++ FG+   FS            I I  L        F  MI  +
Sbjct: 286 RYEKGFIYFGMFGVIAVYFGLLSSFSQPPILAC-----IGIFALSFIASIVCFKKMILSR 340

Query: 358 Y 358
           Y
Sbjct: 341 Y 341


>gi|323166626|gb|EFZ52385.1| hypothetical protein SS53G_3092 [Shigella sonnei 53G]
          Length = 360

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             +  +     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVASQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 181 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 359

Query: 356 K 356
            
Sbjct: 360 S 360


>gi|228472720|ref|ZP_04057478.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275771|gb|EEK14537.1| permease YjgP/YjgQ family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 359

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 134/370 (36%), Gaps = 24/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    ++    L  + I  ++   ++   ++ +      ++K     +   
Sbjct: 1   MKIIDRYILKRYFLTYSALFLMFIPIGILVDYAEKNQKMTDNHAPTEAIIKYYANFVVHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +   TE++ + ++G S    ++P  + A +LS+F+ +    
Sbjct: 61  ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLLMGMF 120

Query: 121 IEPKCRSTIKQLS-AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P       +         L        L+ +++ + YI +S ++ N      F+++  
Sbjct: 121 VVPYSSGVYNEFYGTYLSKDLYSKGSR--LYNQVNKNEYIYVSSFDANTNQGANFVLERF 178

Query: 180 DT-QTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D  +      A S     +   +   L +    +    +     +  K   L  ++ +  
Sbjct: 179 DGLRMTDKITANSIEWVQNDSVKTYRLYNYTHRKVGDWNDIYEKVYQKDTLLNFKTTDLL 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            I   A  +N   L              +  Y   +++R        I  +I +      
Sbjct: 239 PIEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAV---- 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYI---------IHKIEQNPYYIPILYLFLFCIS 347
           + V++R       + ++++FGV  GFSY+           K    P    I+   +F + 
Sbjct: 295 SSVKKRG-----GMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALL 349

Query: 348 SIFLLMIKKK 357
           +++++   ++
Sbjct: 350 AVYMIRKSRR 359


>gi|188532529|ref|YP_001906326.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
 gi|188027571|emb|CAO95418.1| Inner membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 358

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 127/361 (35%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +    +L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+  +  +    +  L+ +  D+ ++ I +   ++ L GI I   
Sbjct: 120 EFVAPQGEQMARNFRAQQLVGGSLLSTQSGLWAKDGDN-FVFIERIRDDSQLSGISIYSF 178

Query: 179 R-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
             D +   + YA S   + D++   L   +    +   +   S      +          
Sbjct: 179 DHDRRLQTVRYAASAKYNADKKLWELAQVDQSDLTDAQQIKGSQTLSGEWKTTLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L     ++S L + +        ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVALDPGALSISGLYSYSK-YLQQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V       +  +    P    +L    F + S+ +L+ +
Sbjct: 298 LRSVSMGMRVITGISFGFLFYVLDQIFGPLSLVYNIPPVLGALLPSAAFFVLSVAMLIKR 357

Query: 356 K 356
           +
Sbjct: 358 R 358


>gi|215488305|ref|YP_002330736.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
 gi|215266377|emb|CAS10814.1| predicted permease [Escherichia coli O127:H6 str. E2348/69]
          Length = 359

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 127/364 (34%), Gaps = 22/364 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETQETSDYLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 A-ADKRALVRQRKKIH-PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-FLFCISS 348
                    R   ++   + + L          +  +      P     L + F+    S
Sbjct: 291 FTFSAPRSPRMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALS 350

Query: 349 IFLL 352
           +   
Sbjct: 351 LVYW 354


>gi|297170682|gb|ADI21706.1| hypothetical protein [uncultured Verrucomicrobiales bacterium
           HF0130_14P10]
          Length = 392

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 113/400 (28%), Gaps = 52/400 (13%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YIL    + F +S + +  +  +                   +     +L+P+ 
Sbjct: 1   MSTLDRYILAEWLKVFGVSLIVLTGLLVLQDAADHAEDFRQGFAGAGEVATYYAWLVPSY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP + P    + T  V+ ++ RN E+ ++   G + + L + +L  A+LLS   +     
Sbjct: 61  LPWLLPIALFVSTLFVVATLRRNNEIAVLRACGVNVLRLSRSLLVTALLLSALSYGLNAK 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVDS 178
             P      + L    +          N        +  +     +   ++  G+ +   
Sbjct: 121 WSPLAMEKSQGLLEVLRGKSDHRNFVSNFDMSPPKTNRRWFFRKFFAVTSSGAGVHLYSR 180

Query: 179 RDTQTHKI-YYAQSGSIDLDRQAIILN------------------------DGEVHRKSP 213
                      A+    D D     LN                        + E   +  
Sbjct: 181 TTGGRDSFRIRAEKAFRDEDGCWRFLNGRFIGFAGPRGLPVPSESGEGLVWEAEFAEQDS 240

Query: 214 ISKDISIM-----KFKSYTLQTESANSSTI---VLKANDQNLSFL---LNPNPNNPNYRP 262
            S   S +     +F S  L     +         K ++ ++  L   ++ +        
Sbjct: 241 SSDGFSSVPILNKQFSSLRLPDVREDPEPFLLMRKKPSELSVRELKTIVDASEVTEGNAA 300

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGL-ISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
                 R   H         +   L I                   +  +L +  G +  
Sbjct: 301 VRPYAIRM-GHAFWASPGCLLAVALGIPFALVGNGRSA-----AAGVARALGLCVGYYVA 354

Query: 322 FSYIIHKIEQNPYYIPILY-----LFLFCISSIFLLMIKK 356
            +      E     IPI +     + L  I +++ L   +
Sbjct: 355 RTMGDSLGE--AGIIPIEWAAGVPVLLLGIVAVWFLWRVR 392


>gi|261345121|ref|ZP_05972765.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
           4541]
 gi|282566809|gb|EFB72344.1| membrane protein, YjgP/YjgQ family [Providencia rustigianii DSM
           4541]
          Length = 358

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 139/365 (38%), Gaps = 19/365 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S LM+   +V ++ +I+ ++++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGRTILNSILMALFLLVSLSGIIKFVEQLRKVGDGDYTAMSAGVFTLLTVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    + +   L ++   +EL+++  +G +R+ +   V+  AI L I   +    +
Sbjct: 63  DIFFPMAALLGSLLGLGALASRSELVVMQASGFTRLQIAMSVMKTAIPLVIVAMLIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +   A+  +  +    +  ++ +   D +I I      N +Q + I    D 
Sbjct: 123 APAGDQWARNYRAEKIVGNSLVATDSGMWAKDAHD-FIYIQSIKDANNIQDVSIYRFDDQ 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDG-----EVHRKSPISKDIS---IMKFKSYTLQTES 232
           +    + +A  G+ D +++  +L+          +K   S+ ++           L   S
Sbjct: 182 RKLKSVMFAARGTYDANKKLWVLSQVDESILSSQQKITGSQRLTYEWQTNLTPEKLGIVS 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            ++ ++ ++   Q +++L            +L   Y+    +++   L   +  L+++  
Sbjct: 242 LHADSLSIRGLYQYITYL--------KESGQLASVYQLSMWQKILAPLSAAVMMLMAVSF 293

Query: 293 ADKR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  V    ++    +   + + +  GF          P     L   LF   SIFL
Sbjct: 294 IFGPLRTVPMGVRVVSGIVGGFLFYILNQGFGNWSLVYSIPPVIAAALPSVLFLGVSIFL 353

Query: 352 LMIKK 356
           L+ +K
Sbjct: 354 LVKRK 358


>gi|74314741|ref|YP_313160.1| hypothetical protein SSON_4447 [Shigella sonnei Ss046]
 gi|73858218|gb|AAZ90925.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 361

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 6   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 62

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 63  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 122

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             +  +     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 123 EWVASQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELGGISIYAF 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + YA +   D + +   L+   E    +P     S     ++          
Sbjct: 182 NENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 241

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 242 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 300

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V    F  +       P    +L    F + S++LLM K
Sbjct: 301 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRK 360

Query: 356 K 356
            
Sbjct: 361 S 361


>gi|312170935|emb|CBX79194.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           ATCC BAA-2158]
          Length = 358

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +    +L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VD 177
             + P+     +   A+  +  +    +  L+ +  D+ +I I +   +N L GI I   
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDN-FIFIERVRDDNQLSGISIYHF 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
               +   + YA S   + D++   L   +    S   + + +      +          
Sbjct: 179 DPQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L     ++S L + +        ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVSLDPGALSISGLYSYSK-YLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V       +  +    P    +L    F   S+ +L+ +
Sbjct: 298 LRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKR 357

Query: 356 K 356
           +
Sbjct: 358 R 358


>gi|332520665|ref|ZP_08397127.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044018|gb|EGI80213.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 540

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 102/272 (37%), Gaps = 17/272 (6%)

Query: 25  FIAWVIQILQR-INLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
            + +V+Q +   I  ++        ++K   Y+ PT++P++ P    + +  V  +   N
Sbjct: 1   MLIFVLQAIWLYIKELAGKDLDPATIVKFLFYITPTLIPLILPLTILLASIMVFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    +  +    + LSI  F   N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMSGLSVFIVALSITTFFFSNNVIPWAEYNSFNLRKNIAKVKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIV--DSRDTQTHKIYYAQSGSIDLDRQ 199
            + E  F ++ +   IK+SK   +    L+ + I           K   A++G +    +
Sbjct: 121 AIAEGQFNQIGEGFNIKVSKKTGDRGQFLEKVVIHQGQKSKPGNFKTIIAENGELVSAEK 180

Query: 200 A----IILNDGEVHRKSPIS-------KDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           +    +IL +G  +  +P         K  +   F  YT+  + +  + + L     +  
Sbjct: 181 SDILKLILFNGYYYDDTPPKDYKERLRKPFAKSIFDKYTMNIDLSQLNAVDLDDKSTDNK 240

Query: 249 FLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           + +  N +  NY  + L T R E ++     L
Sbjct: 241 YSML-NISQLNYTTDSLHTERQEVYELFATNL 271



 Score = 43.0 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 246 NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
           + + ++     N   +   L  +    H++    L  +I      V A   AL+R+    
Sbjct: 318 STTQIIQSKEANLKTKSNWLNRHIIALHEKFALALACIILF---FVGAPLGALIRKGGLG 374

Query: 306 HPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            P+ I++ +     +   +  +   ++  + P L  +   +  +
Sbjct: 375 LPMVIAIVLFLTYHFIGIFAKNSA-KDGTFNPALATWFSTLIML 417


>gi|305432149|ref|ZP_07401315.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
 gi|304444814|gb|EFM37461.1| conserved hypothetical integral membrane protein [Campylobacter
           coli JV20]
          Length = 341

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 128/361 (35%), Gaps = 23/361 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   +   LLK+ G+++P +
Sbjct: 1   MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEINFVDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++R  E +++   G S   L K  L +A L+S  + I   +
Sbjct: 61  LIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKFFLKIAALVSALMLIIALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     ++      +        +   F +   +  I I K   +     I     R+
Sbjct: 121 MIPIVF-ELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFIEKQESDRYENIIMYHPKRN 179

Query: 181 -TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                ++  A+  +   +    A  L++G+++      + + I  F    + T+  + + 
Sbjct: 180 IEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFE-NGQTLFIGNFDKLIVNTQFNDQNL 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              K  +           N+ N  P+  + +        T  LFP+   L ++       
Sbjct: 239 QTKKFYEYW---------NDLNTNPKRAKEFVIYV----TIALFPLASTLFALSFGIVTY 285

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
              +      +F  +++ FG+   FS            I I  L        F  MI  +
Sbjct: 286 RYEKGFIYFGMFGVIAVYFGLLSSFSQPPILAC-----IGIFALSFIASIVCFKKMILSR 340

Query: 358 Y 358
           Y
Sbjct: 341 Y 341


>gi|259907067|ref|YP_002647423.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224962689|emb|CAX54144.1| Inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283476867|emb|CAY72716.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia pyrifoliae
           DSM 12163]
          Length = 358

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 125/362 (34%), Gaps = 11/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +    +L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGALAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+  +  +    +  L+ +  D+ +I I +    N L GI I + 
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDN-FIFIERIRDGNQLSGISIYNF 178

Query: 179 RDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
              +  K   YA S   + D++   L   +    S   +   S      +          
Sbjct: 179 DHERRLKTVRYAASAKYNADKKLWELAQVDQSDLSDAQQIKGSQTLSGEWNTTLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L     ++S L + +        ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVALDPGALSISGLYSYSK-YLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  +  L L      +I L M+ K
Sbjct: 298 LRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGAL-LPSAAFFAISLAMLVK 356

Query: 357 KY 358
           + 
Sbjct: 357 RR 358


>gi|148546263|ref|YP_001266365.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
 gi|148510321|gb|ABQ77181.1| permease YjgP/YjgQ family protein [Pseudomonas putida F1]
          Length = 353

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 131/361 (36%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVLEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   + AQ        +  ++ R  ++ Y+ I+   P+  L G+       
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEE-YVHINAVQPDGLLLGVTRYRFDS 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +     +A+      D    +L D           ++     + + +       +T++
Sbjct: 179 ERKIVTSSFARRAQYQNDH--WLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELLNTVI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADKRA 297
           L     +++ L +   +  + +      Y   F  ++ Q +    ++   IS +    R+
Sbjct: 237 LAPESLSITGLWD-YIHYLSDQGLNNSRYWLAFWTKVLQPMVTAALVLMAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKK 356
           +   ++    +F  + + F    G   ++    Q   + P+L  +    I ++  + + +
Sbjct: 296 VTLGQR----VFTGVLVGFVFRIGQD-LLGPSSQVFGFPPLLAVVIPAGICALAGVWLLR 350

Query: 357 K 357
           +
Sbjct: 351 R 351


>gi|319789792|ref|YP_004151425.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
 gi|317114294|gb|ADU96784.1| permease YjgP/YjgQ family protein [Thermovibrio ammonificans HB-1]
          Length = 354

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 10/355 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  + Y+     + F ++    + +  VI  +   N+VS    S           +P  
Sbjct: 2   IKKLDRYVFSEGVKFFFLTLTTFLTLFAVIDFVSHFNMVSKVGASGAA--AYILGRLPLY 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L+  +  +EL +    G S      P++ L +L S+     +  
Sbjct: 60  GVRVIPIATLIATMVTLSRFSETSELTVARALGISTYRFSAPLVILGVLASVASVAVQET 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE-ENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + P       +++ KA   +T    +   + F     D          N   + + I+  
Sbjct: 120 LLPAGLKRATEIALKAGEEVTNGPQKVPGVWFKDRAGDFVFFWELLPKNKRAERVSIIKV 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +D        A+        + ++             K++   + ++  +    +    +
Sbjct: 180 KDFSPTGRIDAEEAIYKGGGRWLL-----REVFVRDFKELKSTEKETLPINLGVSVKELL 234

Query: 239 VLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +   N + +  L L       +         R E + +L   L PVI  +I I       
Sbjct: 235 LSVNNPEAMGLLELFLTIKRLSKLNYDTNYLRVELYSKLALGLLPVITAIIGIPFGVYNP 294

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             ++   +    I +   +     F  +       P Y     L LF    +FLL
Sbjct: 295 RNKKGYTVLLAAIIVVSMWITVSLFLSLGKSEVLPPLYAAFAPLLLFGAVGLFLL 349


>gi|319779266|ref|YP_004130179.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
 gi|317109290|gb|ADU92036.1| hypothetical protein TEQUI_1112 [Taylorella equigenitalis MCE9]
          Length = 372

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 106/278 (38%), Gaps = 10/278 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+  ++  I  +  +    ++ +   + + + +   +S     +++L IS +   T 
Sbjct: 1   MILFKRSVVSEILNNAGVVFSTLLIVWLSVLLARLLAQAASGIIGPDLVLGISAFSSITA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++      +     ++   R  E+ +   TG S +  IKPVL +AI +S+ + I   +
Sbjct: 61  LPIILIVSLFISIITTVSRNYREQEMYVWFTTGVSLVDWIKPVLRIAIPVSVVIAILTIV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQGIFIVDS 178
             P     I++   +      FS + +  F   D    +   + + NN      IF  + 
Sbjct: 121 TSPWAYLQIEEYRQRYAQRSDFSKIVQGQFLETDAGARVFFIEPSENNNHEFGKIFAREV 180

Query: 179 RDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            + +   I  A  G    + +   + I L  G  +     + +    KF S T+     N
Sbjct: 181 TE-EWISILNADYGDFKTNFETGERYIELGSGTRYDIRIGTPEFRASKFSSVTMNINQKN 239

Query: 235 S---STIVLKANDQNLSFLLNPNPNNPNYRPELLETYR 269
           S     I  +A ++  +        + N R +    +R
Sbjct: 240 SYTEEQIRTRALEKIKARPFTQLIKDNNSRSDSQILWR 277


>gi|302345342|ref|YP_003813695.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
 gi|302149873|gb|ADK96135.1| permease, YjgP/YjgQ family [Prevotella melaninogenica ATCC 25845]
          Length = 405

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 128/361 (35%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ + L I+ IA V    + ++  +        I+       +P 
Sbjct: 45  IGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPY 104

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   IL++   F   +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGMSIRRLMRPYMISCILIAGLTFYLNS 164

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
            + P     R   + L   ++   +   ++  LF  +  +    I  Y+       G  +
Sbjct: 165 FVIPHGTVIRQNFESLYRNSKKNTSAENVQ--LF--VAKNTTAYIQHYDDQYKRGYGFSL 220

Query: 176 VDSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           V +++ +      A      ++   +    +++ ++     + + I     K   L  E 
Sbjct: 221 VKTKNKKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEP 280

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      +        LLN      +     +  Y  EFHKR+       I  +I +  
Sbjct: 281 TDLVYSKGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL 340

Query: 293 ADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + ++   R+      + I L++SFG +          I+ +   I   ++     + I  
Sbjct: 341 SSRK---RKGGMGLYLGIGLALSFGYIMLQTVSATFAIKDDTPPILAAWIPNIIFAIIAY 397

Query: 352 L 352
            
Sbjct: 398 F 398


>gi|218131075|ref|ZP_03459879.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
 gi|217986779|gb|EEC53112.1| hypothetical protein BACEGG_02679 [Bacteroides eggerthii DSM 20697]
          Length = 380

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 132/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++   S       I+       IP 
Sbjct: 22  LKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDRFMSHEAPWEAIIFDYYMNFIPY 81

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A ++++  F   +
Sbjct: 82  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMVSAAIIAVTTFCLGS 141

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK    R   +    K + + T   ++      +D  +   I ++   +     F +
Sbjct: 142 YVIPKGSVTRLNFEDKYYKPRKSTTARNIQ----LEVDSGVIAYIERFEDYSKTGYRFSL 197

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D  +D Q      A+S + D        + D  +     + +  SI+K +          
Sbjct: 198 DKFKDKQLVSHLTARSITYDTATVHKWTVKDYMIREMDGMRE--SIVKGEKMDTILFMEP 255

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +++K   + L+   L              ++ +  E+HKR+       I  LI +  
Sbjct: 256 ADFLIMKNQQEMLTSPQLSEYINRQRQRGFANIKEFEIEYHKRIAMSFASFILTLIGVSL 315

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  I      N    P + ++    + +   
Sbjct: 316 ----SSKKTKGGMGLHLGIGLGLSFSYILFQTIASTFAVNGNVPPFIAVWIPNLLYAFIA 371

Query: 352 LMIKKKYTK 360
             + KK  K
Sbjct: 372 FYLYKKAPK 380


>gi|307310386|ref|ZP_07590034.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|306909281|gb|EFN39776.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|315062298|gb|ADT76625.1| permease YjgP/YjgQ family protein [Escherichia coli W]
 gi|323377117|gb|ADX49385.1| permease YjgP/YjgQ family protein [Escherichia coli KO11]
          Length = 359

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VSS        + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSSGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L   
Sbjct: 181 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|317051997|ref|YP_004113113.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
 gi|316947081|gb|ADU66557.1| permease YjgP/YjgQ family protein [Desulfurispirillum indicum S5]
          Length = 356

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 141/369 (38%), Gaps = 27/369 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M    LY  R       ++   +V +  V+ I+  ++  +    S   +    G  +   
Sbjct: 1   MTLL-LYTFRQYLHIIFLAMAVLVALYGVVDIIGNLDDFA--HLSSLQIAYYVGATLLIG 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  +TP    + T   +T++  N E+ I+ + G S   +  PVL      +   F+    
Sbjct: 58  LYHLTPAIMLIATVMYITTIGVNNEMKIMLSAGISLKKISLPVLVFVSCAAGAHFLLGEQ 117

Query: 121 ----IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYN-PNNTLQGIF 174
               I+P+    +++  A+ Q     + +  NL+ R  D     +I ++N  NN L G+ 
Sbjct: 118 VFQHIKPEV-DALQKYEAR-QQRPPSAIIAGNLWVRNYDGTSFARIRRFNMENNLLLGVE 175

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDR---QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           I   R+    +   A  GS+   R   + +++ +    + S + +    ++F      T 
Sbjct: 176 IYTVREGMIQEYVSADHGSLQEGRIHLEGVVIRNFMTQQVSRLPEH--QVEF------TG 227

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
              S+   +K  ++  S  L  +             Y SE  +R++  L  ++  L++I 
Sbjct: 228 IMESTKASIKPLEEYSSRELASDIAILREAGHPSHLYVSELLRRVSYSLAIIVLSLVAIP 287

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISS 348
                   R+  KI  + + L ++   F   S  +   + +   PY  P +   +F    
Sbjct: 288 LGVTGE--RKSGKIFSVTVGLLVAMVYFIVDSLAMTLGKGDAISPYIAPFIANGVFLGLF 345

Query: 349 IFLLMIKKK 357
           +FL    + 
Sbjct: 346 VFLYSRHRN 354


>gi|283957186|ref|ZP_06374650.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791362|gb|EFC30167.1| hypothetical protein C1336_000800059 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 341

 Score = 95.0 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 121/327 (37%), Gaps = 20/327 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MIPIVF-ELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSD-KYENIIMYRPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+    +
Sbjct: 179 KTDDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  +           N+ N  P+    +        T  LFP+   L ++      
Sbjct: 238 LQTKKFYEYW---------NDLNENPQRAREFVIYT----TIALFPLASTLFALCFGLVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS 323
               +      +F  ++I FG+   FS
Sbjct: 285 YRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|162146455|ref|YP_001600914.1| hypothetical protein GDI_0631 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209543542|ref|YP_002275771.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785030|emb|CAP54574.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531219|gb|ACI51156.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 357

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YI     R+FL+  L +  +  +++ + ++  V      L      +  L P  
Sbjct: 1   MKRFDRYIQMVTLRAFLLVALGLTALFSLLEFVDQLAFVGQGHYRLADAAAYTALLGPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              VTP    +     L  + +++EL  +   G S   +I  VL L + + + LF+    
Sbjct: 61  FMQVTPIAMLLACLLGLGGLAKHSELTALQGIGLSEARIISAVLRLVVPIVMVLFLLAQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  R   ++  A A  + T    ++  F+   D  Y+ + ++        I I     
Sbjct: 121 VVPGTRQMAQEGRAAALASATQKDDQDQAFWAHGDQQYLSVRRFPSETQADDIDIYRFAA 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +   Y  A    I  D     L D          KDI   +F +  L + + ++    
Sbjct: 181 DGSMTSYLHAARAQIGADD-VWTLRDVTR-------KDIVADQFHTSQLDSMAWHAFLSS 232

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLE------TYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +    +L     P      Y  +L         Y  E   R++     +     +    
Sbjct: 233 RQIRFLSLPPESVPPIALYRYIQDLKRHHLPAMRYEQELWARISMPFAMIALIACAAPFV 292

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                 +       I ++++I F +     S +    + NP    +    L  +S+ ++ 
Sbjct: 293 FGPPRSQNVGYRMAIGVAIAIVFSLGQEITSRLGLLFDLNPALTALTPSVLLMMSAAYVF 352

Query: 353 M 353
           +
Sbjct: 353 I 353


>gi|298529509|ref|ZP_07016912.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510945|gb|EFI34848.1| permease YjgP/YjgQ family protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 355

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 131/366 (35%), Gaps = 19/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR       +       +  ++  + R+N +  +      +L+   + +P +
Sbjct: 1   MSVLNRYLLRQNLFYTAVLLFSGTMVYLIVDFVGRMNAMVEAGLGALQVLEYFVFKMPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F +     +  M+R+ EL+ ++++  S        +  A+++ + LF+    
Sbjct: 61  VAQTLPAIFMLGVLIQMAMMHRSNELVAMESSAISFRKPAVFFIGYALVVFMLLFVFSET 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           +  +     +Q  +   +         E+++ + D D  I I + +      +       
Sbjct: 121 LGVRGEQVTRQIWNQDVRDREAAVEGLEDVWVK-DRDYMIHIERAHINEGRGKDFTAYKK 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFK-SYTLQTESANSS 236
            D    +    ++   ++ +  ++L D  V +      + +  M+ +    L++ +   S
Sbjct: 180 SDPGKIQEII-KAPEFEVHKNRLLLRDVTVFKPHSLERQSLQEMEMEVKIDLRSFALVDS 238

Query: 237 TIVLKA-NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +  +A +   LS L+N    +       +E   +  H ++      V+  L+++     
Sbjct: 239 DLPYQAWSIFTLSALVNQLKESGAS----VEKISTALHSKIAYPFALVVMTLLALAL--- 291

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE---QNPYYIPILYLFLFCISSIFLL 352
               R +     + + L I F  +  + + +   E     P+         F I S+  L
Sbjct: 292 --FTRIKNIYALVTLGLVIVFFYYTVYVFGVSYAEEGVTAPFVGAWTANVFFGILSLLQL 349

Query: 353 MIKKKY 358
               + 
Sbjct: 350 FWMDRR 355


>gi|26987719|ref|NP_743144.1| permease YjgP/YjgQ family protein [Pseudomonas putida KT2440]
 gi|24982407|gb|AAN66608.1|AE016288_7 conserved hypothetical protein [Pseudomonas putida KT2440]
 gi|313497349|gb|ADR58715.1| Permease YjgP/YjgQ family protein [Pseudomonas putida BIRD-1]
          Length = 353

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 131/361 (36%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVMEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   + AQ        +  ++ R  ++ Y+ I+   P+  L G+       
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEE-YVHINAVQPDGLLLGVTRYRFDS 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           + +     +A+      D    +L D           ++     + + +       +T++
Sbjct: 179 ERKIVTSSFARRAQYQNDH--WLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELLNTVI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADKRA 297
           L     +++ L +   +  + +      Y   F  ++ Q +    ++   IS +    R+
Sbjct: 237 LAPESLSITGLWD-YIHYLSDQGLNNSRYWLAFWTKVLQPMVTAALVLMAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKK 356
           +   ++    +F  + + F    G   ++    Q   + P+L  +    I ++  + + +
Sbjct: 296 VTLGQR----VFTGVLVGFVFRIGQD-LLGPSSQVFGFPPLLAVVIPAGICALAGVWLLR 350

Query: 357 K 357
           +
Sbjct: 351 R 351


>gi|57237667|ref|YP_178915.1| hypothetical protein CJE0913 [Campylobacter jejuni RM1221]
 gi|86152068|ref|ZP_01070280.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153259|ref|ZP_01071463.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613133|ref|YP_001000511.1| hypothetical protein CJJ81176_0843 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415093|ref|YP_001482349.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005447|ref|ZP_02271205.1| hypothetical protein Cjejjejuni_04350 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315124344|ref|YP_004066348.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57166471|gb|AAW35250.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|85840853|gb|EAQ58103.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842985|gb|EAQ60196.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249473|gb|EAQ72433.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|157386057|gb|ABV52372.1| hypothetical protein C8J_0773 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747735|gb|ADN91005.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315018066|gb|ADT66159.1| hypothetical protein ICDCCJ07001_795 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315058276|gb|ADT72605.1| Predicted permease YjgP/YjgQ family [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315928910|gb|EFV08167.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
 gi|315931165|gb|EFV10138.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 341

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 121/327 (37%), Gaps = 20/327 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MIPIVF-ELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSD-KYENIIMYRPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+    +
Sbjct: 179 KADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               K  +           N+ N  P+    +        T  LFP+   L ++      
Sbjct: 238 LQTKKFYEYW---------NDLNENPQRAREFVIYT----TIALFPLASTLFALCFGLVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFS 323
               +      +F  ++I FG+   FS
Sbjct: 285 YRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|78777193|ref|YP_393508.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
 gi|78497733|gb|ABB44273.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
          Length = 339

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 137/358 (38%), Gaps = 19/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +   FL   L +  IA ++ +++     +    ++  + K+  +++P +
Sbjct: 1   MKIVQNYIRESVSILFLSIFLPLFSIASIVFLIKLATYTAVIQLTIFEMAKLFFFMLPEL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  ++ + E++++   G     +IK VL  A+ L   L  +  +
Sbjct: 61  LFYTLPISFFVAITLALFKLSNDNEIVVLFALGIRPKLIIKTVLKPALFLCAILLFNFFV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  ++      +  +    F+ L  + F     +  + I K N N T   + +  ++ 
Sbjct: 121 LFPHAKTLSSNFISYKKSEAKFN-LSASEFGHKFGEWLLYIGKDNQNETYSDVILF-NKK 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A++  I  D   + L        S   +  + + F++  +            
Sbjct: 179 QDEEVLIRAKNAQIINDSGILRLKLTSGEGYSYSDEKFTQINFETMFINDTMKTDLDKYE 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              +  L       P  P+ +   +          ++  LF + F ++SI  A    +V 
Sbjct: 239 TPMEYWL-------PEAPSSKKRKML---------ISNILFSL-FPVLSIFLAATIGIVH 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R +   I++ + +   +++  +  +  I  +   + + + +L     ++  +I  K+
Sbjct: 282 ARHQKGKIYLFMFLGIILYYTLAVTLQLIIGSYALLVLAFGWLLGTYILYKKIIVAKF 339


>gi|50119364|ref|YP_048531.1| putative permease [Pectobacterium atrosepticum SCRI1043]
 gi|49609890|emb|CAG73325.1| putative permease [Pectobacterium atrosepticum SCRI1043]
          Length = 358

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 124/360 (34%), Gaps = 9/360 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFTTIMTTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   ++     +    +  L+ +  ++ +I I +   +  L G+ I    D 
Sbjct: 123 SPQGEQMARNYRSQMISGGSMISTQGGLWAKDGNN-FIFIERVTGDKELSGVSIYRFDDQ 181

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
                  YA S   + DR    L+  +    S   +   S      +           + 
Sbjct: 182 NKLLSVRYAASAEFEDDRNVWKLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ +  ++  L N          +    Y+     ++   +   +  L+++        +
Sbjct: 242 LEPDALSIRGLHN-YAKYLKQSGQESNRYQLNMWSKIFAPVSVAVMMLMAVSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R       I I +S  F  +     F  +       P    IL   +F   S+ LL+ ++
Sbjct: 299 RSVSAGSRIVIGISFGFLFYLLNEIFRPLSLVYGIPPILGAILPSSVFLFISVALLLKRR 358


>gi|15639869|ref|NP_219319.1| hypothetical protein TP0884 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026107|ref|YP_001933879.1| hypothetical protein TPASS_0884 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323201|gb|AAC26574.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018682|gb|ACD71300.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
          Length = 362

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 143/359 (39%), Gaps = 17/359 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + +  L+  L    + +V  +L     + +   S   ++++  Y IP  L  VTP
Sbjct: 2   YVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTP 61

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   + +   L  +  N ELL +   G S   LI P+L + +  ++F+F+  +++ P   
Sbjct: 62  FAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASF 121

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             ++Q+  +   ++     E +   R  + + + + +   +  +  + IVD  D+++ K+
Sbjct: 122 IRLRQVYWRVLSSVPSLGFESHT-TRKHNGVILSVGEVFHS-VMYQLLIVDKSDSRSLKV 179

Query: 187 YYAQSGSIDLDRQ-----AIILND---GEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++   ++          I ++D     V+R  P   D+       Y + T+       
Sbjct: 180 VSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYF 239

Query: 239 V-LKANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + L     +   L          +  P  + TY+ EF K+ +  +  V+F  +S   +  
Sbjct: 240 MGLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTL 299

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  Q K        L +  G +W  S    ++      +P L L++   +  F  +I
Sbjct: 300 SNISSQGKGFVG---GLIVVLG-YWIISIGGQELALRLSIVPSLALWIPNAALFFTALI 354


>gi|187736000|ref|YP_001878112.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426052|gb|ACD05331.1| permease YjgP/YjgQ family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 396

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 126/374 (33%), Gaps = 21/374 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ R    +F+M    +  I  +      +  + +    L    +     +P +L
Sbjct: 8   SILDKYVARTWFTAFIMCTAILTLIYIIGDFADNVGDLMNLDAPLMGTFRFYLSQLPMIL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P+   + T   LT ++ ++E+  +  +G S + +  P++  A+  SI+  I     
Sbjct: 68  NLILPYTLLLGTLWALTKLSSSSEITGMLQSGRSLLRINTPIIIGAVFASIYFGIFGFHW 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK----YNPNNTLQGIFIVD 177
            P      K + +           +  ++    +     +       +P N  + + +  
Sbjct: 128 APNSALYRKLMFSSLSQNKNNHASQSTIYKNDAESRIWYLGNPPGIDSPGNPFRQVRVEQ 187

Query: 178 SRDTQTHKI-YYAQSGSIDLDRQAIILNDG----EVHRKSPISKDISIMKFKSYTLQTES 232
                  K   +A   + D   +               +     D+ +   + Y    E 
Sbjct: 188 FSAPGKMKYELFADEATWDPASRTWTFRQAIKRNYSQEEPRQLHDVPVFAGQEYQTLKEH 247

Query: 233 ANSS-----TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
              +     +  ++ + Q    L      +       L + ++E+H R+ +    +I   
Sbjct: 248 YPETPWQLISPNVRVDTQGTPAL-QELIKSGTTNARYLRSLQTEWHVRIARIFSCIILTF 306

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSIS---FGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
           I+I +A      ++R  +  I I+L ++     ++  F  +        +    +   ++
Sbjct: 307 IAIPSAI---TFQRRSAMSGIGIALFLAAAMLFLYEFFPTLASAGYLPTWLGAWMPNIIY 363

Query: 345 CISSIFLLMIKKKY 358
            I +I L   K  +
Sbjct: 364 TIIAIRLFQTKLAH 377


>gi|237745417|ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
 gi|229376768|gb|EEO26859.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS]
          Length = 382

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 128/388 (32%), Gaps = 36/388 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y    I +S +   +  + +     ++  ++ V      L+ +        P  
Sbjct: 1   MKILQRYFFSQIVKSVVFILVAFLGLFAFFDLISELSSVGRGGYQLHHVFVYILLGFPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   + T   +     N+E  I+  +  S       +  + ++  +F F+   +
Sbjct: 61  IYELMPFAVLIGTIYAMALFASNSEFTIMRVSSLSTRDACWMLAKVGLVFLVFTFLVGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-----------LDDDLYIKISKYNPNNT 169
           + P       +                 ++ +           +    ++ I    P+ T
Sbjct: 121 LTPYTSRMASEFRNNLIGRNLSDKFRTGMWSKDTIRENGREGEIIGSRFMNIKTMRPDGT 180

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF----- 223
           ++ I + + +R+ +  K   AQ+G    + +  +  +G V      S      +F     
Sbjct: 181 IEQIKLYEFNRELELVKTVTAQNGHYLGNHEWQL--NGVVESLIKSSGKSKGKRFPDSAP 238

Query: 224 ---------KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
                                S I + AN  +   L   N +      +   +Y+  F K
Sbjct: 239 VVDTEKRDSIRLVSDVTPDILSVISVDANKMSAYELAVYNRH-LVENKQDATSYQIAFWK 297

Query: 275 RLTQWLFPV-IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN- 332
           ++   ++P  +F ++++         R       IF  + I        +   H    N 
Sbjct: 298 KI---IYPFSVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVAFILINNLFSHVGLLNT 354

Query: 333 --PYYIPILYLFLFCISSIFLLMIKKKY 358
             P+   ++   LF +S++F L   +++
Sbjct: 355 WPPFLTAVIPSVLFLLSAVFALWWVERH 382


>gi|56552290|ref|YP_163129.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543864|gb|AAV90018.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 364

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 18/345 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL---QRINLVSSSTESLNILLKISGYLIP 58
           +    Y+ +            ++FI   + +L    RI  V  + ++   L        P
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQA--ELFHYVLLRTP 66

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  
Sbjct: 67  QLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFN 126

Query: 119 NIIEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIF 174
           + +  +  + +    A         +    N++ R  D L I +           L GI 
Sbjct: 127 DHLVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHL-IHVDNVQGYGDNVRLSGIT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +        I  A +G        +     +V      +  ++               
Sbjct: 186 VYNRSQKTLVSILSADTGQWTGHGWHLN----KVKSFDVAADTVTEKPVLDINTDLPPER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +   +KA++  +  L        +      +  ++    R T     ++  ++  VA  
Sbjct: 242 FTLADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGF 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              L R  +    I I +S+ F  F   ++ +  +     Y P+L
Sbjct: 301 G--LARSGRLFVRIVIGMSLGFAYFVADNFAL-AMGNLGTYPPLL 342


>gi|292486866|ref|YP_003529736.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           CFBP1430]
 gi|292900737|ref|YP_003540106.1| permease [Erwinia amylovora ATCC 49946]
 gi|291200585|emb|CBJ47716.1| putative permease [Erwinia amylovora ATCC 49946]
 gi|291552283|emb|CBA19320.1| beta-lactamase/D-alanine carboxypeptidase ampH [Erwinia amylovora
           CFBP1430]
          Length = 358

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 126/361 (34%), Gaps = 11/361 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F      +  +  +  I++ ++ +  + +    +L     +   +P
Sbjct: 3   GVLDRYIGKTI---FNTIMATLFMLVSLSGIIKFVDQLRKTGQGEYTVLGAGLYTLLSVP 59

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L ++ + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 60  KDIEIFFPMAALLGALLGLGTLAQRSELVVMQASGFTRMQIAASVMKTAIPLVLLTMAIG 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VD 177
             + P+     +   A+  +  +    +  L+ +  D+ +I I +   +N L GI I   
Sbjct: 120 EFVAPQGEQMARNYRAQQLMGGSLLSTQSGLWAKDGDN-FIFIERMRDDNQLSGISIYHF 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSS 236
               +   + YA S   + D++   L   +    S   + + +      +          
Sbjct: 179 DPQRRLKTVRYAASAKYNADKKLWELAQVDQSDLSDTQQINGNQTLSGEWKTSLTPDKLG 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L     ++S L + +        ++   Y+     ++ Q L   +  L+++      
Sbjct: 239 VVSLDPGALSISGLYSYSK-YLKQSGQMAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGP 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIFLLMIK 355
                        IS    F V       +  +    P    +L    F   S+ +L+ +
Sbjct: 298 LRSVSMGMRVVTGISFGFLFYVLDQIFGPLSLVYNIPPILGALLPSAAFFALSVAMLVKR 357

Query: 356 K 356
           +
Sbjct: 358 R 358


>gi|293393092|ref|ZP_06637407.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
 gi|291424238|gb|EFE97452.1| YjgP/YjgQ family membrane protein [Serratia odorifera DSM 4582]
          Length = 356

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 119/359 (33%), Gaps = 8/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + +M+   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGMYTLLSVPKDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DS 178
            P+     +   A+     +    +  L+ +  +D +I I +    N L G+ I    D 
Sbjct: 123 APQGEQMARNYRAQQMYGGSLLSTKNGLWAKDGND-FIYIERVAGENELSGVNIYHFNDR 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R  +   + YA + + +     +   D               +    +           +
Sbjct: 182 R--RLETVRYAATATFEDGAWQLSQVDTSDLTNEKQVTGTQTLT-GVWKTNLTPDKLGVV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L  +  ++S L N          +    Y+     ++   L   +  L+++        
Sbjct: 239 ALDPDSLSISGLHN-YVKYLKQSGQEASRYQLNMWSKIFSPLSVAVMMLMALSFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      IS    F V       +  +   P  +  L   L  +     L++K++
Sbjct: 298 SVPMGMRVVTGISFGFLFYVMDQIFGPLSLVYNMPPVLGALLPSLLFLLISVYLLLKRR 356


>gi|218516795|ref|ZP_03513635.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 102

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 61/92 (66%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YILR +G+ FL++ L ++ I W  Q+LQRINLV+ S +S+    K++  ++P++
Sbjct: 11  MKLLETYILRRVGQMFLVALLPVLAIIWTTQVLQRINLVTDSGQSIGSFAKLATMILPSI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           +P+V PF   +  T  LT+MN ++EL +ID  
Sbjct: 71  IPVVLPFALVIAITQTLTTMNNDSELTVIDAA 102


>gi|104783410|ref|YP_609908.1| hypothetical protein PSEEN4441 [Pseudomonas entomophila L48]
 gi|95112397|emb|CAK17124.1| conserved hypothetical protein, putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 353

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 130/361 (36%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++           P  
Sbjct: 1   MVKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMDAGSFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYDMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   + AQ        +  ++ R  ++ ++ I+   PN  L G+       
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEE-FVHINSVQPNGLLLGVTRYRFDE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +     +A+       +   +LND           ++     + + +       +T+V
Sbjct: 179 QRKIQTSSFARKAQYHEGK--WVLNDVATTYFRGDHTEVVKAPEEVWDVSVTPELLNTVV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW--LFPVIFGLISIVAADKRA 297
           L     +++ L +   +  + +      Y   F  ++ Q      ++   IS +    R+
Sbjct: 237 LAPESLSITGLWD-YIHYLSDQGLNNSRYWLAFWTKVLQPAVTAALVLMAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKK 356
           +   ++    +F  + + F        ++    Q   + P+L  +    I ++  L + +
Sbjct: 296 VTLGQR----VFTGVLVGFVFRIAGD-LLGPSSQVFGFPPLLAVVIPAGICALAGLWLMR 350

Query: 357 K 357
           +
Sbjct: 351 R 351


>gi|160872818|ref|ZP_02062950.1| permease [Rickettsiella grylli]
 gi|159121617|gb|EDP46955.1| permease [Rickettsiella grylli]
          Length = 355

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 118/358 (32%), Gaps = 13/358 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R I  + L     ++ +  +IQ++     + +   +L          +P+ 
Sbjct: 1   MNIIDRYLGRTIIHTTLSVLGILLILFALIQLISETRDIGTGHYTLTSAFSYVLLTLPSQ 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + +   L  +++++EL+I+   G S   +   ++   + +     +    
Sbjct: 61  FYNFFPIAILLGSILGLNVLSKHSELMILHANGVSLYQMAWSLIKATLWMVFITVLIGEG 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P      +               ++   +  D   +I I        L  +       
Sbjct: 121 LAPHAARLAESHKFFLTTKGQTLTTQQGSVWIRDGHNFIYIQSILDPTHLNHVNCYQFDD 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D    K  +A+   ++   +A    D      +        +  + +         +  +
Sbjct: 181 DNNLLKASFAK--QVNYKAKAWHAYDIATSLITLNKVKKKFIAHEIWPFSFSPKLLTISI 238

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEFHKRLTQW--LFPVIFGLISIVAAD 294
           +K  + +L  L        +YR +       Y   F KR+ +   L+ ++   I      
Sbjct: 239 IKPEEMSLRQL----HEYIHYRKKNHLNTSPYSFAFWKRIVEPISLWVMMCLAIPFSFKH 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            R L    K +  I I  S      +   + I   +  P+   +L LF+F + +I L+
Sbjct: 295 LRTLATSLKTLAGITIGFSFYLLNNFLGPFAI-VYQWPPFLAALLPLFIFMLIAILLM 351


>gi|224024955|ref|ZP_03643321.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
           18228]
 gi|224018191|gb|EEF76189.1| hypothetical protein BACCOPRO_01686 [Bacteroides coprophilus DSM
           18228]
          Length = 369

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 125/357 (35%), Gaps = 14/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  I + I+   ++   L  I+       IP 
Sbjct: 11  LKRLDKYIIIKFLGTYFFAIALIISIAVVFDINENIDDFINNKAPLKAIVFDYYLNFIPY 70

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++++  +I   
Sbjct: 71  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIIALVTYILST 130

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   +Q+    +       ++      +D  +   + +Y   N     F +
Sbjct: 131 EVIPTGSVTRLKFEQVYKNKKKVDYVRNIQ----LEVDSGVIAYMERYEDYNRTGYRFSL 186

Query: 177 DS-RDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D       I+ D  +     + + I+        +  E  +
Sbjct: 187 DKFEDHKLVSHLTARRVTYDTATVHKWIIRDYMIREMKGMRETITRGDRMDSIINMEPQD 246

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +        L              ++ +  E++KR+       I  +I +    
Sbjct: 247 FLITRGQQETMTSPQLREYIDKQKKRGFANIKIFEVEYYKRIATSFAAFILTVIGLS--- 303

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  R+      + I + +SF  +  F  I      N    P L +++  I  +F+
Sbjct: 304 LSSQKRKGGMGLHLGIGIGLSFS-YILFQTISSTFAINGNVPPNLAVWIPNILYLFI 359


>gi|283834897|ref|ZP_06354638.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
 gi|291069157|gb|EFE07266.1| membrane protein, YjgP/YjgQ family [Citrobacter youngae ATCC 29220]
          Length = 360

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 123/361 (34%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     +     +    P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAMGAGLYTLLSAP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+     +    ++ L+ + D D ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK-DGDSFVYIERVKGDAELGGISIYSF 180

Query: 179 RDTQT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +    + YA S + D +++   L+   E + + P     S     ++          
Sbjct: 181 NDKRRLQSVRYAASATFDPEQKIWRLSQVDESNLQDPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  I  L            LM++K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|241761652|ref|ZP_04759739.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373960|gb|EER63493.1| permease YjgP/YjgQ family protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 364

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 18/345 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQIL---QRINLVSSSTESLNILLKISGYLIP 58
           +    Y+ +            ++FI   + +L    RI  V  + ++   L        P
Sbjct: 9   RQIAFYLSKLFVVRCFAVLAALIFILQTLDMLGESARILAVKGNGQA--ELFHYVLLRTP 66

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++    PF   +     L+++N+N+E++ +   G S   ++ P++    L+    F+  
Sbjct: 67  QLIARFLPFAVLLGVLITLSTLNQNSEIISMKAAGISAHQILMPLIASCFLIGCVSFVFN 126

Query: 119 NIIEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIF 174
           + +  +  + +    A         +    N++ R  D L I +           L GI 
Sbjct: 127 DRLVTRATAKLDAWQAVDYGQPPPAATSGVNIWLRDGDHL-IHVDNVQGYGDNVRLSGIT 185

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           + +        I  A +G        +     +V      +  ++               
Sbjct: 186 VYNRSQKTLVSILSADTGQWTGHGWHLN----KVKSFDVAADTVTEKPVLDINTDLPPER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +   +KA++  +  L        +      +  ++    R T     ++  ++  VA  
Sbjct: 242 FTLADVKADEMEVVPLYRAIKA-LDAAGRPTDELKASLIHRFTGAFAAILMPILGSVAGF 300

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
              L R  +    I I +S+ F  F   ++ +  +     Y P+L
Sbjct: 301 G--LARSGRLFVRIVIGMSLGFAYFVADNFAL-TMGNLGTYPPLL 342


>gi|126667524|ref|ZP_01738494.1| predicted Permease [Marinobacter sp. ELB17]
 gi|126627950|gb|EAZ98577.1| predicted Permease [Marinobacter sp. ELB17]
          Length = 353

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 113/317 (35%), Gaps = 8/317 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+++ +G +  +  + ++ +  +   +  ++  +++ ++L+  L      +P  
Sbjct: 1   MHKIDRYVMKTVGGAMFLVMVVVLSLDLIFAFIAELDGTANNYQTLDA-LWYVFLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    M     L SM  ++EL +I   G S   ++   +  A+ + +        
Sbjct: 60  IYDYLPLGAFMGCLVGLGSMASSSELTVIRAAGVSIKRIVWSAMKPALFVVLLGVGIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P      +   A A  A +       L+   + +++I ++   P+  L GI     + 
Sbjct: 120 LAPPAERIAQSEKAVALGAGSNVAAASGLW-HREGNVFIHMNAVQPSGVLFGISMFRFNE 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             Q     +A+      D    IL + +    +             +      +  S ++
Sbjct: 179 QRQLLAASFAERAIYQGDH--WILENVQTTELAEQGTTRVTHNQLRWESGLSPSVLSVLI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADKRA 297
           +K  +  ++ LL       + +      Y   F K+    L    ++   IS +    R+
Sbjct: 237 VKPENLAMTGLLT-YARYLDEQGLSASRYWLAFWKKTLMPLGTAVMVLVAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSI 314
           +    +    + + LS 
Sbjct: 296 VTMGFRVFTGLLVGLSF 312


>gi|254446939|ref|ZP_05060406.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
 gi|198263078|gb|EDY87356.1| permease YjgP/YjgQ [gamma proteobacterium HTCC5015]
          Length = 347

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 121/352 (34%), Gaps = 9/352 (2%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVLPMVTP 66
           + R I  +  +  L I+F+      L     V+   + S    +      +P       P
Sbjct: 1   MARAILAATALVLLVILFLDAFFGFLGEGKYVARYADYSYWHAIGYVMLRVPGKAMEFMP 60

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L ++  N+EL  +   G S+  ++   +   +++++ + +    + P+  
Sbjct: 61  AITLIGALLGLGTLASNSELTAMRAAGLSKGRIVWGGMKTGLIIALAVALLGEYVAPQSD 120

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                  A+AQ     S L +  F+  + D ++ I +  P+  L+G+ I   ++ +  ++
Sbjct: 121 LKAAAFRAQAQGRAITSELRD--FWLKNGDEFVYIKRAEPDKRLRGVRIFQVQEGELKRL 178

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
             A S           LN    +R    +    ++   + +   +        L   +  
Sbjct: 179 LKAASAQ--HTASGWRLNQVREYRFEDDAVSRKVIGQMTKSQLVDVDLFEVAQLSPENMR 236

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           L  L N      +        YR  F K++T  L  ++  L+++         R      
Sbjct: 237 LLELDN-YIAYLDDNRLEATLYRKAFWKKVTAPLSILVMLLLAMPFIFANR--RSGNAGA 293

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI-SSIFLLMIKKK 357
            + I +      +   S I +  +     + +         +++   ++K+ 
Sbjct: 294 RLVIGILFGMSYYIISSLIENLGQVYGVPVLLGAFTPIVAFTALGFWLLKRS 345


>gi|261749332|ref|YP_003257017.1| hypothetical protein BPLAN_247 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497424|gb|ACX83874.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 361

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 130/356 (36%), Gaps = 15/356 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           MK  + YI+R I  +F+   + +  I+ +I + QR++ + ++  S+ + L+    +    
Sbjct: 1   MKILDRYIIRNILVTFIFITILLQIISVIIDLSQRMHRLENNQGSIKDALIYYYPFWSIW 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +    +P    +      + +N+++E+  I  +G S   +  P L  A L+ +   I   
Sbjct: 61  LAYTFSPISVFLSIIFFTSRLNKHSEINAILASGISFKRITIPYLISASLIGMGALIINY 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
              P       +   +  L+  +    EN   +  ++ ++ Y+ I  ++    +    I 
Sbjct: 121 SFLPLANKMKNKFHYQYLLSSRYKNKYENNQTISTQISNNEYLFIRNFSRKKNIGQDCIY 180

Query: 177 DSRDTQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
              +     IY   A++       +  IL++      +           K          
Sbjct: 181 QKFNGNK-LIYLLKAKNIFWYKKHRIYILSNYSETYLNKNKDIFFKGVHKIQNFSMTPEE 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  A    +S L              + T+ +E+++R +      I  L+ +    
Sbjct: 240 LLPEEYIAETMTISELRKFIDREKKRGNSNINTHLNEYYQRTSYPFSNFILTLLGLSI-- 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                ++ +  H   + + ++F   + F   I K+     YIP  YL ++  + IF
Sbjct: 298 ---SSKKGEPAHNFIMGIILAFI--YIFCTEISKVYSTKDYIP-SYLSVWLPNGIF 347


>gi|114797396|ref|YP_760970.1| YjgP/YjgQ permease [Hyphomonas neptunium ATCC 15444]
 gi|114737570|gb|ABI75695.1| putative permease, YjgP/YjgQ family [Hyphomonas neptunium ATCC
           15444]
          Length = 373

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 131/367 (35%), Gaps = 12/367 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTV 60
              + YILR      ++    ++    +I +++++  +    E +L   L++S   +P +
Sbjct: 5   SRIQRYILRECLSGLVLVLGILLLAILMIDVVEQMRTIGGDVEITLLDALRLSLMKLPMI 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF     T    T +NR +EL II  +G S    + PV+ L + L IF  ++ N 
Sbjct: 65  IEQTLPFALLAATMMAFTRLNRRSELSIIRASGLSAWRFLTPVIVLGVALGIFSSLALNP 124

Query: 121 IEPKCRSTIKQLSAKAQL--ALTFSYLEENLFFRLDDD---LYIKISKYNPNN-TLQGIF 174
           +  +   + +   A+            E  ++ R  DD     I   +      TL  + 
Sbjct: 125 LAARLSQSFEAERARLLDVGREVVQVAETGVWLRQGDDSSQYVIHARRVEDGGRTLLDVK 184

Query: 175 IVDSRDTQTHKIYYAQSGSI-DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           I++ +     +        +  +D +  +LN+G    ++ +    +    +  TL   ++
Sbjct: 185 IIEEQRLYNGRQPTNDFAFVRRIDAEKAVLNEGFWQLENLVENLPNQAPERRATLAIPTS 244

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR-LTQWLFPVIFGLISIVA 292
             +  +L       +      P    +         S +  R  T    PV+F  ++++ 
Sbjct: 245 LDAVRLLDEYASPNTVGFWELPR-FIFETRAAGLDTSRYTMRLFTLTATPVLFTAMALIG 303

Query: 293 ADK-RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIF 350
           A     L R       +   +  + G+++   +            +   +     +  + 
Sbjct: 304 ALACLRLQRLGGTSRLLATGVLAAIGLYFFTQFSSSLGSTGAAPAVVAAWSPPLFVLFVS 363

Query: 351 LLMIKKK 357
           L  I  +
Sbjct: 364 LAFIAYR 370


>gi|270265133|ref|ZP_06193396.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
 gi|270041067|gb|EFA14168.1| hypothetical protein SOD_k01710 [Serratia odorifera 4Rx13]
          Length = 356

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 117/359 (32%), Gaps = 8/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + +M+   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGDYSALSAGMFTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DS 178
            P+     +   A+     +    +  L+ +  +D +I I +      L G+ I    D 
Sbjct: 123 APQGDQMARNYRAQQMYGGSLLSTKNGLWAKDGND-FIYIERVAGEKELSGVNIYHFNDQ 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R  +   + YA + S +     +   D               +    +           +
Sbjct: 182 R--RLETVRYAATASFEDGVWKLSQVDTSDLTNEKQVTGTQTLT-GEWKTNLTPDKLGVV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L     ++S L N          +    Y+     ++   L   +  L+++        
Sbjct: 239 ALDPTSLSISGLHN-YVKYLKQSGQEANRYQLNMWSKVFSPLSVAVMMLMALSFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 298 SVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLLKRK 356


>gi|312968689|ref|ZP_07782898.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312286907|gb|EFR14818.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 359

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETQETSDYLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|331684625|ref|ZP_08385217.1| putative permease [Escherichia coli H299]
 gi|331078240|gb|EGI49446.1| putative permease [Escherichia coli H299]
          Length = 359

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N       + I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVDVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETQETSDNLPWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|16125407|ref|NP_419971.1| hypothetical protein CC_1155 [Caulobacter crescentus CB15]
 gi|221234150|ref|YP_002516586.1| hypothetical protein CCNA_01213 [Caulobacter crescentus NA1000]
 gi|13422473|gb|AAK23139.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963322|gb|ACL94678.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 353

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 111/340 (32%), Gaps = 7/340 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY+LR +    L + L ++ +  ++ +L   + +      +  +   +   +P +  
Sbjct: 2   KLQLYVLRTVATRILGAALILMSVLQILDLLDVTSDILDRGLGMAGVGYYAALRLPRLFE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P           + + R + ++ +  +G S   ++   +  A+ + +   +   ++ 
Sbjct: 62  QVAPIAVLAGGLFAFSQLARESAIVAMRASGISGYRIVGMAVPAAVAVMLLDALCGQVLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+   T+                    F    D L I  +      T+ G+ I   RD++
Sbjct: 122 PRADPTLADWWRNTTPVAERKEPVPRTFRAGAD-LVIGANASADGRTITGVTIF-RRDSK 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +   ++ +   D +A  L   +  R +      S     S+       +   +    
Sbjct: 180 GILVEKVEAPAARYDGKAWTLEQPKTTRFAGDLSQASTAAATSWPTALRPQDVQGLFGDD 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +    +       N  + RPE    Y +            ++  L+S   A       Q 
Sbjct: 240 SMPTAASARRALENGGSDRPESF--YATHLQAAFASPFVSLVMLLLSAPVALANFRSGQG 297

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
             +    ++  + F V  G    +    ++    P L ++
Sbjct: 298 AVLLTGGLAAGLMFLVANGMLTALG---ESGALTPFLAVW 334


>gi|207092118|ref|ZP_03239905.1| hypothetical protein HpylHP_03688 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 272

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 96/248 (38%), Gaps = 4/248 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+   + + F    L + FI+ ++ ++   ++      S   L+++  Y +P  +  
Sbjct: 2   IKHYLFMAVSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   + K  + L++L+S  L +   I+ P
Sbjct: 62  ILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSLLVSAILLVFSLILIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S       + +       +    F +   D  + + K   NN+   + +  ++    
Sbjct: 122 TSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK-AENNSYDNLVLFSNKSLSQ 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLK 241
                AQ G+I+       LN  + H        +  + F+   L  + +S NS+     
Sbjct: 180 ESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDFEELHLRNKLKSFNSNDAAYL 239

Query: 242 ANDQNLSF 249
                L +
Sbjct: 240 QGTDYLGY 247


>gi|218296305|ref|ZP_03497061.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218243377|gb|EED09907.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 347

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 118/342 (34%), Gaps = 14/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR     FL     IV +     + + +  + +       LL    Y  P  
Sbjct: 1   MKTLDRYLLREALSLFLGGLAAIVLLFLAGAVYEVLAPLVAKGADPYTLLLYLLYRAPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ M  ++EL  +   G +R  ++ P L LA+L+++ +F+    
Sbjct: 61  LVRGAPVAYLFTLLLLLSRMAEDSELKALLALGVARERVLLPFLLLALLIALAVFLLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +  + L  +  L    + L     F+      + + +   +       I   R 
Sbjct: 121 LVPKALAAGQDLLRRQVLERPRALLTPGTTFQDARGRVVYVGEVAGDR------IGKLRV 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+ G        +++ +G+           ++ +F+   +  +         
Sbjct: 175 LSQEEVLLAERGRFQEG--VLLVEEGQRVTYEGDRPR-TLTRFQKGEILLKDLTFEPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L  L                   + +H+R  +    V+F L ++  A       
Sbjct: 232 PANRMTLGEL-KKEVERLRALGVKAGLEATTYHRRYAEPASAVVFALFAVGLA----FYL 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                   ++ ++I    ++    +   + +     P+L  +
Sbjct: 287 LGGSRSLGWVGVAILTFFYYATWSVGRIMGEQNALDPLLAAW 328


>gi|260845739|ref|YP_003223517.1| hypothetical protein ECO103_3663 [Escherichia coli O103:H2 str.
           12009]
 gi|257760886|dbj|BAI32383.1| conserved predicted membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 359

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L   
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|291060243|gb|ADD72978.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 365

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 143/359 (39%), Gaps = 17/359 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+   + +  L+  L    + +V  +L     + +   S   ++++  Y IP  L  VTP
Sbjct: 5   YVCEVVFKHILVGVLCFFLVFFVNNVLLFAQTLLTKHVSAADVVRLLLYSIPAALIYVTP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
           F   + +   L  +  N ELL +   G S   LI P+L + +  ++F+F+  +++ P   
Sbjct: 65  FAVLVGSLLGLGRLRNNLELLALQVLGVSPRFLIFPLLSIGLCSALFVFVFSDVVVPASF 124

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
             ++Q+  +   ++     E +   R  + + + + +   +  +  + IVD  D+++ K+
Sbjct: 125 IRLRQVYWRVLSSVPSLGFESHT-TRKHNGVILSVGEVFHS-VMYQLLIVDKSDSRSLKV 182

Query: 187 YYAQSGSIDLDRQ-----AIILND---GEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             ++   ++          I ++D     V+R  P   D+       Y + T+       
Sbjct: 183 VSSRKSVLESSADQTVPFTIRMHDPCMLIVYRTRPRICDLIYGGRADYHVHTQQTQPEYF 242

Query: 239 V-LKANDQNLSFLLNPNPNNPNYR--PELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           + L     +   L          +  P  + TY+ EF K+ +  +  V+F  +S   +  
Sbjct: 243 MGLGPGGFSTCSLYREIQEKIKAKENPRHIATYQLEFQKKFSHPISVVLFIFLSFGLSTL 302

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             +  Q K        L +  G +W  S    ++      +P L L++   +  F  +I
Sbjct: 303 SNISSQGKGFVG---GLIVVLG-YWIISIGGQELALRLSIVPSLALWIPNAALFFTALI 357


>gi|256019097|ref|ZP_05432962.1| hypothetical protein ShiD9_09284 [Shigella sp. D9]
          Length = 359

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L   
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|237729200|ref|ZP_04559681.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908929|gb|EEH94847.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 360

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 122/361 (33%), Gaps = 10/361 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     +     +    P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDAMGAGLYTLLSAP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P+     +   A+     +    ++ L+ + D D ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAK-DGDSFVYIERVKGDAELGGISIYSF 180

Query: 179 RDTQT-HKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +    + YA S + D +++   L+   E +   P     S     ++          
Sbjct: 181 NDKRRLQSVRYAASATFDPEQKVWRLSQVDESNLTDPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q L   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKVFQPLSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                        IS    F V       +  +   P  I  L            LM++K
Sbjct: 300 LRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMLRK 359

Query: 357 K 357
            
Sbjct: 360 S 360


>gi|332524895|ref|ZP_08401082.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
 gi|332108191|gb|EGJ09415.1| hypothetical protein RBXJA2T_03768 [Rubrivivax benzoatilyticus JA2]
          Length = 370

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 134/372 (36%), Gaps = 19/372 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++    + R I  S +   L  + + + I +++++  V  +  +  + +  +   +P  
Sbjct: 1   MRTVRRLLYRDIVASVVFVALAFLSLFFFIDLVEKMGNVGRAGRTTGVAVMSALLELPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   L  + +++E  I+   G      +  +  L ++     F   + 
Sbjct: 61  FYELMPIAVLIGTIYSLARLAQSSEFTILRTGGLGPGRALSLLAVLGVVFGAITFAVGDY 120

Query: 121 IEPKCRSTIKQLSAK----AQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFI 175
           + P        + A      ++  T ++L+E       +  Y + ++   P+  L GI I
Sbjct: 121 VVPVAERKAVAVKALAAGGMRVGRTGAWLKEKRMTPEGERSYSVNLAGTTPDGRLSGIRI 180

Query: 176 VD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR------KSPISKDISIMKFKSYTL 228
            +   D +      A++G++  D     L++ EV R      + P       +    +  
Sbjct: 181 FEFDADGRLSVRIAAKTGTVAADGT-WTLSEAEVTRWPDVRLREPAGVVEQRLPELRWA- 238

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
            T +       +   +   +  L     + + + +  ++Y   F K+    L  ++   +
Sbjct: 239 STLTPEVVAAAVMPRETMTTADLWRYSVHLSDQAQATQSYEILFWKKALYPLACLVMTAL 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-----ILYLFL 343
           ++  A   A            I L ISF +    +  +  +     +I      +LYL +
Sbjct: 299 ALPFAYLHARAGSVSLKVFGGIMLGISFVLLNNLAGHVGLLRDWTPWIAAATPSLLYLLM 358

Query: 344 FCISSIFLLMIK 355
              +  +L+  +
Sbjct: 359 SLAAFTWLVRYR 370


>gi|91215236|ref|ZP_01252208.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
           700755]
 gi|91186841|gb|EAS73212.1| hypothetical protein P700755_13102 [Psychroflexus torquis ATCC
           700755]
          Length = 337

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 122/341 (35%), Gaps = 9/341 (2%)

Query: 22  FIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
             + I  ++ + ++I+ +  +   +  +L   G        ++ P    +      + + 
Sbjct: 1   MFIPIGIIVNLSEKIDDIKENEVPIEEVLVFYGNFTIYFANLLFPIFLFLSIIWFTSKLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
            NTE++ I ++G S    ++P L  A L+     +    + P       +   +      
Sbjct: 61  NNTEIIAILSSGISFSRFLRPYLIGATLVCGIALMFTMYLVPNASQGFNEFKYQYFKKGK 120

Query: 142 FSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA 200
            S   +N++ +++D+ +I  + +     T +   +      +      A     +     
Sbjct: 121 QSQETQNVYRQVNDNEFIFATNFQTSTGTARNFTLEHFEGQEMTFKISASRLKFNAKDST 180

Query: 201 IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNY 260
             LN+ E    +     I         L  E    + +   A   +   L +        
Sbjct: 181 YTLNNFEKRTINEREDVIERQSSLDTILPFEFGELTPVEYIAETLDYGELKDFITTEKRR 240

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
               + +Y+   +KR +  +   I  +I++      A+ R+      + I + I+F  F 
Sbjct: 241 GSANISSYQIVAYKRWSVPVSAFILTIIAVSV---SAMKRRGGMGANLAIGIVIAFA-FI 296

Query: 321 GFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKKK 357
               +   I +   + P++ ++    LF + +I+LL+  K+
Sbjct: 297 FLDKVFGTIAEKSTFSPLIAVWFSNILFGLLAIYLLIKAKR 337


>gi|288803319|ref|ZP_06408752.1| membrane protein [Prevotella melaninogenica D18]
 gi|288334139|gb|EFC72581.1| membrane protein [Prevotella melaninogenica D18]
          Length = 377

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 128/361 (35%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    +++ + L I+ IA V    + ++  +        I+       +P 
Sbjct: 17  IGILDWYIIKKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFVPY 76

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   +
Sbjct: 77  YSNLFSPLFVFIAVIFFTSKLAGNSEIISMMAAGVSIRRLMRPYMISCVLIAGLTFYLNS 136

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
            + P     R   + L   ++   +   ++  LF  +  +    I  Y+       G  +
Sbjct: 137 FVIPHGTVIRQNFESLYRNSKKNTSAENVQ--LF--VAKNTTAYIQHYDDQYKRGYGFSL 192

Query: 176 VDSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           V +++ +      A      ++   +    +++ ++     + + I     K   L  E 
Sbjct: 193 VKTKNKKIVSHMTAMEIQYDTVADTKYHWKVSNWKIRTLKGLKEHIQSGASKDTVLLMEP 252

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      +        LLN      +     +  Y  EFHKR+       I  +I +  
Sbjct: 253 TDLVYSKGQQETFTSPELLNYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL 312

Query: 293 ADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + ++   R+      + I L++SFG +          I+ +   I   ++     + I  
Sbjct: 313 SSRK---RKGGMGLYLGIGLALSFGYIMLQTVSATFAIQDDTPPILAAWIPNIIFAIIAY 369

Query: 352 L 352
            
Sbjct: 370 F 370


>gi|253991456|ref|YP_003042812.1| hypothetical protein PAU_03983 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782906|emb|CAQ86071.1| similar to putative membrane protein yjgq of escherichia coli
           [Photorhabdus asymbiotica]
          Length = 358

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 128/358 (35%), Gaps = 4/358 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I ++ LM+   +V ++ +I+ + ++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQGEYTTISAGLYALLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L I   I    +
Sbjct: 63  QIFFPMAALLGALLGLGALATRSELVVMQASGFTRMQVAGSVMKTAIPLVILTMIIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+     +   A+     +     + ++ +   D +I I +   +  ++G+ I   + D
Sbjct: 123 APQGEQMARNYRAQKMFGGSLVSTTKGMWAKDGAD-FIYIQRVMSDTEIKGVNIYHFNDD 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
            +   + YA S   D +     L+  E    +   K   S      +  +        + 
Sbjct: 182 KKLLSVKYADSAVYDENNDLWKLSQVEESDLTDSKKITGSQRISADWKTRLTPEQLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L     ++S L     +      +    Y+    K++   L   +  L+++         
Sbjct: 242 LDPEALSISGLY-QYISYLKQSEQESGRYQLNMWKKIFAPLSVAVMMLMALSFIFGPLRT 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     I+L   F +       +  +   P  +  L   L  ++    L++K++
Sbjct: 301 VPMGVRIITGITLGFLFYLLNEIFGPLSLVYSMPAVLAALLPSLLFLTLSIYLLLKRQ 358


>gi|332280200|ref|ZP_08392613.1| YjgP/YjgQ permease [Shigella sp. D9]
 gi|332102552|gb|EGJ05898.1| YjgP/YjgQ permease [Shigella sp. D9]
          Length = 386

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L   
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|281356604|ref|ZP_06243095.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316731|gb|EFB00754.1| permease YjgP/YjgQ family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 419

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 106/355 (29%), Gaps = 62/355 (17%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     + +  L  V +  +  + + I+    +  S   +L+  GY +P  
Sbjct: 1   MPKLDGYILREFLIKYSVLLLVFVILFILSDVYRDISDFLEAKASYRSILQYLGYKLPGN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     + +  +N E+  +  +G S       +  + ++++         
Sbjct: 61  VRFILPISMLLGCMWTMATFGKNMEITAMRASGVSLFRCGGSIFVVGLIVTAVNIYFNEA 120

Query: 121 IEPKCRSTIKQLSAKAQ---------------------------LALTFSYLEENLFFRL 153
           + P      +++ ++                                    +    F+  
Sbjct: 121 LVPYTERRAEEIRSEVADGRKYVQNLLTYRSTDQQRHWLFKTFTTDEAQQNVTVKTFWTD 180

Query: 154 D--DDLYIKISKYNPNNTLQGIF-------IVDSRDTQTHKI----------YYAQSGSI 194
              DD+ +       +  ++ +F       +  SR+ +  +I          ++A   S 
Sbjct: 181 GMIDDIVLGAGDAEFDALIRQMFRLKADRILALSREERAKEIRKELKGRKVDFFANRVSY 240

Query: 195 DLDRQAIILNDGEVHRKSPISKD----------------ISIMKFKSYTLQTESANSSTI 238
           D  ++A   +DG         +                    + F    +     +    
Sbjct: 241 DAGKKAWTFSDGNFTSYDRNDETKFEASRGTSTMHDPQPYKSIVFNEKEIPEAPDDIMNS 300

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           + + +D     + +    N N    +   Y + F+ RL       +   + I  A
Sbjct: 301 IKEKDDLPTLVIWDLVRRNDNMPDRVYSIYMTVFYYRLAFPWACFLAVFLGIPLA 355


>gi|157162459|ref|YP_001459777.1| YjgP/YjgQ permease [Escherichia coli HS]
 gi|188495921|ref|ZP_03003191.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209920455|ref|YP_002294539.1| hypothetical protein ECSE_3264 [Escherichia coli SE11]
 gi|300815539|ref|ZP_07095763.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|157068139|gb|ABV07394.1| putative permease, YjgP/YjgQ family [Escherichia coli HS]
 gi|188491120|gb|EDU66223.1| putative permease, YjgP/YjgQ family [Escherichia coli 53638]
 gi|209913714|dbj|BAG78788.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|300531468|gb|EFK52530.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|320201893|gb|EFW76468.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli EC4100B]
 gi|323183568|gb|EFZ68965.1| hypothetical protein ECOK1357_3348 [Escherichia coli 1357]
 gi|323946694|gb|EGB42715.1| YjgP/YjgQ permease [Escherichia coli H120]
 gi|324018178|gb|EGB87397.1| hypothetical protein HMPREF9542_03233 [Escherichia coli MS 117-3]
 gi|324119791|gb|EGC13671.1| YjgP/YjgQ permease [Escherichia coli E1167]
          Length = 359

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 129/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L   
Sbjct: 181 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|260891452|ref|ZP_05902715.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
 gi|260858835|gb|EEX73335.1| permease, YjgP/YjgQ family [Leptotrichia hofstadii F0254]
          Length = 153

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +    +       FI  +  I++ +  + +S      ++    Y IP V
Sbjct: 1   MKIIDRYIYNSLFLPSIFGISIFTFIMMLNVIMEVMERLFASDLPFISIIDYLFYAIPGV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +    V   ++   E++ ++ +G     +I+P     I+L++     E  
Sbjct: 61  LVQTIPMGAFLGVMLVYGGLSETNEIVAMEGSGIGLFRIIRPAFIFGIILTLIGLGLEIY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           + P+     K          T   +    FF 
Sbjct: 121 VNPRALKKYKCTDKTNSSFKTKFIVRRKSFFD 152


>gi|118594057|ref|ZP_01551404.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
           HTCC2181]
 gi|118439835|gb|EAV46462.1| hypothetical protein MB2181_00275 [Methylophilales bacterium
           HTCC2181]
          Length = 344

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 118/348 (33%), Gaps = 9/348 (2%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAME 72
                M    ++ +      +Q I  +      ++  +      IP  +    P    + 
Sbjct: 1   MIGIFMIMFGLISLFAFFDFIQEIGDLGKGGYGISHAMTFVILSIPGHIYETVPLAVLIG 60

Query: 73  TTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQL 132
           +   +  ++ N+EL +I  +G S   +   ++      +IF  +  ++I P      +Q+
Sbjct: 61  SMYTIGQLSYNSELNVIRASGFSIKKIATSLMITGGFFAIFTLLIGDLIAPNSEKNAQQM 120

Query: 133 SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQS 191
                 ++         F+  D   ++ I    P+ TL+ I I +         I  A+ 
Sbjct: 121 KIGLTNSVVGQEFSSG-FWIKDGGNFVNIENVLPDATLERINIYEFDSQFNLRTIVNAEK 179

Query: 192 GSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL 250
           G+ +     +  +    ++  S   K I +  +KS             ++ + ++  SF 
Sbjct: 180 GAYEEGEWRLENITQTILYENSVKKKSIPMGSWKS----LMRPEMMNALIISPEKMSSFN 235

Query: 251 LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFI 310
           L    +      +    Y     +++   L P++  + ++     +   R   K   +FI
Sbjct: 236 LYKFISYLKINNQKSTKYEVALWEKIIHPLMPLVMIIFAVPFGFLQE--RSGGKFFKMFI 293

Query: 311 SLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            + I        + I H    N +   I  L    I     L + K++
Sbjct: 294 GIIIGIAYQITNTLIRHLSLLNDWQPFISSLVPTLIFLCLGLYLIKRF 341


>gi|281422528|ref|ZP_06253527.1| putative membrane protein [Prevotella copri DSM 18205]
 gi|281403352|gb|EFB34032.1| putative membrane protein [Prevotella copri DSM 18205]
          Length = 413

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 131/364 (35%), Gaps = 14/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++     +  S   I+ IA V    + ++  +        I+       +P 
Sbjct: 53  IKKLDWYIIKKFLGYYFFSIALIISIAIVFDFNENLSKFTEHHAPARAIIFDYYANFVPY 112

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      T +  N+E++ I  +G S   L++P +   +LLS   F    
Sbjct: 113 FANLFSALFVFVAVILFTTKLASNSEIIAILASGVSFKRLLRPYMITCVLLSALSFGLSA 172

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---GIFIV 176
            + P   + I+Q           +   EN+  ++D  +   +  Y  +N+++   G  + 
Sbjct: 173 YVIPHG-TVIRQNFETMYKNKKKNTSAENVQLQVDKGVIAYMQHY--DNSMKRGYGFCLD 229

Query: 177 DSRDTQTHKIYYA---QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +D +      A   Q  +I   +    L++ ++ +   + + I+    K   +  E  
Sbjct: 230 KFQDKKLVSHLTAMDIQYDTISDSKYHWKLSNWKIRKLQGMKEHITSGAQKDTIIMMEPT 289

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +        L +      N     +  Y  E+HKR+       I  +I +  +
Sbjct: 290 DLVYSKGQQETFTSPELRDYISKQINRGSGNVVQYEVEYHKRIASSFASFILTIIGVSLS 349

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY-IPILYLFLFCISSIFLL 352
            ++   R+      + + L++SFG     +       Q  +  +   +L  F  + +   
Sbjct: 350 ARK---RKGGMGAALGVGLALSFGYIMLQTVSATFAIQANFPSVLAAWLPNFLFAIVAYF 406

Query: 353 MIKK 356
             +K
Sbjct: 407 CYRK 410


>gi|86150264|ref|ZP_01068491.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597526|ref|ZP_01100760.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562454|ref|YP_002344233.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839380|gb|EAQ56642.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190118|gb|EAQ94093.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360160|emb|CAL34954.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926071|gb|ADC28423.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927714|gb|EFV07043.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 341

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 24/329 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L     + L     +  I  ++  +Q   L SS   S   LLK+ G+++P +
Sbjct: 1   MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEISFLDLLKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E +++   G S + L K  L +A L+S F+ +   +
Sbjct: 61  LIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKFFLKIASLISAFMLVVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     ++      +        +   F +   D  I I K + +   + I +     
Sbjct: 121 MIPIVF-ELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFIEKQDSD-KYENIIMYRPKH 178

Query: 179 RDTQTHKIYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SAN 234
           +     ++  A+   +    D  A  LN G+++         S  +F +  + T+  + N
Sbjct: 179 KADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQSIFS-GEFDTLVVNTQFNTDN 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
             T        +L+  L        Y                T  LFP+   L ++    
Sbjct: 238 LQTKKFYEYWNDLNENLQRAREFVIYT---------------TIALFPLASTLFALCFGL 282

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFS 323
                 +      +F  ++I FG+   FS
Sbjct: 283 VTYRYEKGYVYLGMFGVIAIYFGLLSSFS 311


>gi|325983221|ref|YP_004295623.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
 gi|325532740|gb|ADZ27461.1| permease YjgP/YjgQ family protein [Nitrosomonas sp. AL212]
          Length = 352

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 122/353 (34%), Gaps = 10/353 (2%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              YI   +   FL++   I+ +     +L +++ V   T  +      +  L+P     
Sbjct: 2   IYRYISGQVLIGFLIAIAVILPLFSFFDLLDQLDDVGRGTYHITDAFLYTTMLLPRRFIQ 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + PF   + T   L  +  ++EL+ +   G S   +    L + ILL + + I E  I P
Sbjct: 62  IAPFVALLGTVTALGKLAVHSELIAMRVAGLSPWRISLAPLSVGILLLLGVAILEQFIAP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
           + +       A A            ++ R + ++ ++I +   NN    I I+   +   
Sbjct: 122 QLQQKAITYRAIALEQSAELGRNLGIWTRNEKNI-LRIGQIISNNKAAAIEILQLDEEGF 180

Query: 184 HKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                 AQ+  I  D +   L++  V   +     ++      ++      + +T+    
Sbjct: 181 LAAHVLAQTAEIV-DNETWELSNVIVRTFANNQITVAHHTTLHWSSFVSPEDIATLTKPP 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              +   L            +  ++Y     +++   L  +   L+SI          + 
Sbjct: 240 ESLSPLELFRH-VEFLRSTGQEADSYALALWRKIGSALMTIAMLLLSIPFVFG---SIRS 295

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLFLFCISSIFLL 352
              + +  +  I   V+     I +    ++ NP  I +   F   + +   L
Sbjct: 296 GLSNKLVFASLIGIAVYLLDQIIANAGLILQLNPALIALAPGFTIIMVANVWL 348


>gi|83596032|gb|ABC25390.1| predicted permease YjgP/YjgQ family superfamily [uncultured marine
           bacterium Ant39E11]
          Length = 359

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 118/365 (32%), Gaps = 14/365 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YIL     +F +    I+ IA V  + Q+++    +  +L  +L          
Sbjct: 1   MNRVDRYILSKFLGNFALFMGLIMLIAMVFDVSQKLDDFMDNDLNLATILLDYYLNFIAF 60

Query: 61  LPMVTP-FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                      + T      M    E+  +   G S   L++P L  A ++ +      +
Sbjct: 61  YGNTFSALILFLSTVFFTARMANQGEISAMLTGGLSFGRLMRPYLIGAAVICLASASLSH 120

Query: 120 IIEPKCR-STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            I P    S I    A  Q  +T   +  +L  ++    +I +  ++P+      F  + 
Sbjct: 121 FIIPGTNSSRIAFEEAYIQHRVTSRPI--HLHRQVLPGHFIYVETWSPDRMGGYNFTYEH 178

Query: 179 RDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--LQTESANS 235
            +         A     D  + +  +++    R+   +  +S+                 
Sbjct: 179 FEQGRMVDRLKASFIKYDSAKTSWHMDN-WTLRQWQSNGHMSLTSGVRLDSSFAFLPQQF 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S+            L            E +  Y  E+++R    L   I  LI+   A  
Sbjct: 238 SSNNRGIETMTSPELYKALKQVRLSGSEAVLFYEMEWYRRSAYPLSAFILVLIAAAMA-- 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               R ++      I+L +   V + F   +   +       P++ +++  I  + + M+
Sbjct: 296 ---SRSQRGGIGAQIALGLLVAVLYIFLMQLSSTLASTHVTSPLVAVWVPNILFLGVAML 352

Query: 355 KKKYT 359
             +  
Sbjct: 353 AYRRA 357


>gi|323436074|ref|ZP_01050240.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
 gi|321496389|gb|EAQ39255.2| predicted permease YjgP/YjgQ family [Dokdonia donghaensis MED134]
          Length = 358

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 128/363 (35%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++    +F+   +  + I  ++ + ++I+ + ++      +           
Sbjct: 1   MKILDWYIVKRYIGTFVTMLVLFIPIGIIVNLAEKIDKILANEVPFGEVALYYLNFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P L  A ++    F+    
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFTRFLRPYLIGATVVCAGAFVMGTY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+      +   +            +++ ++D   YI  S +NP       F  +  +
Sbjct: 121 LAPRANKGYNEFIFEYLKKKKNDRDTRDVYRQIDAGDYIYASSFNPRTKRGRNFTWEHFE 180

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTI 238
                    A     + +     L  G   R      D+ I + K   T   +  + + +
Sbjct: 181 GNKMTYKMSATQIRFNEEDTTYTLY-GFKKRIIGEDGDVLIKQAKIDTTFAFDIDDLTPV 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A   N   L              +  Y     KR +  +   I  +I++      A+
Sbjct: 240 EYIAETLNTPELREFIAKEKARGSSYISRYEVTLQKRYSLPVAAYILTIIAVAV---SAM 296

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMI 354
            R+      +   + ++F VF  F  +   + +   + P++ ++    LF I + +LL  
Sbjct: 297 KRRGGMGINLAFGIVLAF-VFIFFDKVFGTLAEQSDFPPLVAVWTPNILFAILAAYLLQN 355

Query: 355 KKK 357
            K+
Sbjct: 356 AKR 358


>gi|218555553|ref|YP_002388466.1| hypothetical protein ECIAI1_3128 [Escherichia coli IAI1]
 gi|218362321|emb|CAQ99943.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI1]
          Length = 386

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 129/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L   
Sbjct: 208 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|327402663|ref|YP_004343501.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
 gi|327318171|gb|AEA42663.1| permease YjgP/YjgQ family protein [Fluviicola taffensis DSM 16823]
          Length = 373

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 130/380 (34%), Gaps = 31/380 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+R    +F      I+ +A V  I +R++       S   I+       +  
Sbjct: 2   LKILDRYIIRKFLSTFFFMLGIIMLLAMVFDIAERLSDFIEKQASFKAIVFDYYLNFLLY 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
                +     +        M ++ E++ +  +G   I +I+P +  A +L +   +  +
Sbjct: 62  YGNTFSSMIVFIAVIWFTAKMAQDAEIIPMLFSGRPFIRIIRPYMIAATILMLLSLVLNH 121

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P+                    L EN       +  +  S YN    +   F+++  
Sbjct: 122 FVLPRANRVRLDFEESFYRD---RLLVENYNAEFPGNELVHYSTYNSEENMINDFVIERY 178

Query: 180 DTQTHKIYY--AQSGSIDLDRQAIILNDGEVHRKSPISKD----------ISIMKFKSYT 227
           D+Q   I++  A++ S+    +   L D    + S               I   +     
Sbjct: 179 DSQNRLIHFMKARTASVIPGVKRWRLTDVFERKVSYSDTSGTSKGEMESIIQKHQLTENH 238

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET-----YRSEFHKRLTQWLFP 282
           L+  +   +   +   D  +  +     ++   + +         Y  E ++R +     
Sbjct: 239 LKDTTLPYNVDDIAVRDNVVEAMTFRELSSFIAKEKAKGNPSVAMYEIELYQRSSYPFAT 298

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP---IL 339
            +  LI +         R+++    I I++ + F   + F+  I  +       P    +
Sbjct: 299 YVLTLIGVSV-----SSRKKRGGIGINIAIGLLFVFIYIFAMKITTVAATTVGFPSVAAV 353

Query: 340 YL--FLFCISSIFLLMIKKK 357
           +L   +F I ++FL  I  K
Sbjct: 354 WLPNVMFGILALFLYRIAPK 373


>gi|251791279|ref|YP_003006000.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
 gi|247539900|gb|ACT08521.1| permease YjgP/YjgQ family protein [Dickeya zeae Ech1591]
          Length = 356

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 120/357 (33%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGGYSVMGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGTLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P      +   ++     +    +  L+ +  +D ++ I +    + L G+ I    + 
Sbjct: 123 APAGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND-FVYIQRVAGESELLGVNIYHFDKQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   + YA S   +     +   +               +    +           + L
Sbjct: 182 NKLLSVRYAASAVYENGGWKLSQVEESDLSDGKQIGGSQTVS-GEWKTNLTPDKLGVVAL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           + +  ++  L +   N      +    Y+     +L   L   +  L+++          
Sbjct: 241 EPDALSIRGLYD-YINYLRQSGQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I IS    F V       +  +   P  +         +    +L++K++
Sbjct: 300 PAGMRIVIGISFGFLFYVLDQIFGPLSLVYHIPPVLGASLPSALFLFISIMLLLKRR 356


>gi|206602448|gb|EDZ38929.1| Putative permease, YjgP/YjgQ family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 362

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 126/369 (34%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI   + + FL+  + +  I  VI  +++I    S   +L ++ +   Y    V
Sbjct: 1   MRILTRYIASELFKIFLLCFISLEAIYGVIDSVEKIKDFLSHHAALPLIGQYFFYRSIEV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    + T   L  +++N EL  I   G S +   KP L L +L+S+        
Sbjct: 61  SFRVLPMSGLLATLLTLGILSKNHELTAIRAAGISLVKATKPFLALGVLISLISIAMNYQ 120

Query: 121 IEPKCRSTIKQLSAKAQLA-----LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P     +       ++           L    F   + D+Y   +  +  + L  + +
Sbjct: 121 LVPYAY-QMTDYIKDVRIDQGKTGRVTFELNNVWFRHGNQDIYGARTIRDGGSELDKVVL 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               D+  H  +   + ++   +      DG + R  P    + I  F+           
Sbjct: 180 YHL-DSTFHLSWQIDAKTLRYHQGLWSFRDGRLTRFLPD-GSLKIESFQKMDTTLTRRPV 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH-KRLTQWLFPVIFGLISIVAAD 294
                K     ++ L  P  +      E     R ++   R     FP+   L+ ++A  
Sbjct: 238 DFTYEKTR---MTHLSYPELDRYIALLEKSHLPREKYEVTRDAMIAFPIAAFLMVLMAIP 294

Query: 295 KR-ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-----FCISS 348
                 RQ        ISL +S   +W    +   + +    +P +  +      F +S 
Sbjct: 295 FGIREGRQVGIAKGFGISLLLSMS-YWTIYSLGLALGKGGVLLPWISAWFANMIVFFVSI 353

Query: 349 IFLLMIKKK 357
              L++ + 
Sbjct: 354 SLFLLLNRS 362


>gi|160898976|ref|YP_001564558.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
 gi|160364560|gb|ABX36173.1| permease YjgP/YjgQ family protein [Delftia acidovorans SPH-1]
          Length = 369

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 133/375 (35%), Gaps = 26/375 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES---LNILLKISGYLI 57
           M+     + R I  +     L  + + +   ++  +  V    ++   +   L      I
Sbjct: 1   MRVLRNLLYRDIIAAVGYVTLAFLALFFFFDLVDELRWVGRGGDNGYQITHALLFVVLRI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+    +++E  I+  +G      ++ ++ L +   +  F +
Sbjct: 61  PSHLYELMPITVLIGTIYVMARFAQSSEFTIMRTSGMGPWLALRTLMVLGLGFVLATFGT 120

Query: 118 ENIIEPKCRSTIKQL----SAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
            + + P   +  + +     A+     T ++L+E    + D  + I +           +
Sbjct: 121 GDYLAPAAENAGQNIRAIHLAQLSRGATGAWLKE---RQGDHSIAINVRAIRGPGDFSNV 177

Query: 174 FIVDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTL--- 228
            I D           +AQ+  +  D ++  L   E  R K+     + +++ K  +L   
Sbjct: 178 RIFDFDGQGRISAQIHAQAAQVSEDGESWTLQGVEASRLKAKADAGMVLLREKEDSLVWK 237

Query: 229 -QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
               +   S  +LK +  +   L      +     +  + Y  EF +++   +  ++  +
Sbjct: 238 TGISAEMVSAALLKPDRMSTISLF-QYVRHLEANGQAAQKYEIEFWRKVFYPMSCLVMVV 296

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PILY 340
           +++  A      R       +F  +      F     F YI      +P+       +LY
Sbjct: 297 LALPFA--YLHFRSGGIAAYVFGGVMAGISFFLLNNVFGYIGTLQTWSPWLTAAAPGLLY 354

Query: 341 LFLFCISSIFLLMIK 355
             L   +  +L++ +
Sbjct: 355 SLLSLTAFTWLVLRR 369


>gi|326336103|ref|ZP_08202275.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691612|gb|EGD33579.1| permease YjgP/YjgQ family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 359

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 136/369 (36%), Gaps = 22/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    ++    L  + I  ++   ++   ++ +      ++K     +   
Sbjct: 1   MKIIDRYILKRYFLTYSALFLMFIPIGILVDFAEKNQKMTDNHAPTEAIIKYYANFVIHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +   TE++ + ++G S    ++P  + A +LS+F+ I    
Sbjct: 61  ANILFPIFLFLSVIWFTSKLAEKTEIVAMLSSGISYNRFLRPYFYGATILSVFVLIMGMF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S +        L+         L+ +++ + YI +S ++ NN     F+++  D
Sbjct: 121 VVPYS-SGVYNEFYGTYLSPNLYSKGSRLYNQVNKNEYIYVSSFDANNNQGSDFVLERFD 179

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILN-DGEVHRKSPISKD-ISIMKFKSYTLQTESANSST 237
             +      A +     +            HRK     D    +  K   L  ++ +   
Sbjct: 180 GLKMTDKITASNIQWIENDSIKTYRLSYYTHRKVGEFDDIYEQVIQKDTLLNFKTTDLLP 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I   A  +N   L              +  Y   +++R        I  +I +      +
Sbjct: 240 IEYAAETKNFFELNKFIAEERQKGSPNIRIYELVYYRRWAAIFNVFILTIIGVAV----S 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYI---------IHKIEQNPYYIPILYLFLFCISS 348
            V++R       + ++++FGV  GFSY+           K    P    I+   +F + +
Sbjct: 296 SVKKRG-----GMGVNLAFGVLIGFSYVFFERIFGIMAEKSGITPLMAVIIPNAMFALLA 350

Query: 349 IFLLMIKKK 357
           ++++   ++
Sbjct: 351 VYMIRKSRR 359


>gi|298372644|ref|ZP_06982634.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275548|gb|EFI17099.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 389

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 115/346 (33%), Gaps = 12/346 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              + YI+R    +F M  + I+ I+ V    ++++  S +   +  I+       IP  
Sbjct: 34  SILDRYIMRKYLSTFFMCIIMIISISVVFDYAEKVDDFSENNAPMRAIIFDYYFNFIPYF 93

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + TP    +      + M  NTE++ + +TG S   L+ P    A L+ +  F+    
Sbjct: 94  ANLFTPLFAFISVIFFTSKMAYNTEIIAMLSTGMSFKRLLVPYFMSATLIGLMSFLLGGF 153

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P           K         +  N+   L+  +     +Y  N N      +    
Sbjct: 154 VIPASNKPRLDFEDKYYRKFRSELVT-NIQLELEPGVVAYFERYEENINRGYNFSLEKFE 212

Query: 180 DTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +      A+   ID+D      L +        + + +++       ++ +  +    
Sbjct: 213 GKKLVSRLTAE--YIDMDSLYHWHLVNYVKRDFKGMREIMTMGDGLDSVIKMDPQDFFIT 270

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A     + L               + + +E++ R       +I  LI +  A     
Sbjct: 271 GEDAPQMTNTKLYQYLRRQKERGIPGAQKFENEYNNRFAMPFAALILTLIGVSLA----- 325

Query: 299 VRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFL 343
            R+ +    + +   I+   ++  F  +      N     +L ++L
Sbjct: 326 SRKVRGGTGLHLGFGIALSAIYILFCTVSSMFAINGTMPSLLAIWL 371


>gi|206889444|ref|YP_002249741.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741382|gb|ACI20439.1| putative permease, YjgP/YjgQ family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 369

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 13/265 (4%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           ++   R+FL+    +  +  ++ ++++I+       S    ++   Y IP  +  + PF 
Sbjct: 11  IKDFVRTFLVLLFSMSCLLSIVGLIEKIDDFMPYKPSTTFFIEYGLYSIPRYIFYLIPFV 70

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             + +  + +   R+ E LI+  +G     L+KP L L I++SI  FI    ++P+    
Sbjct: 71  TLVTSLFIFSIGVRSREFLILSVSGGRLRGLLKPFLILGIVISIVGFIFGEFLQPEFTKK 130

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG-IFIVDSRDTQTHKIY 187
           +  +  +       S +++ LF R  D   IKI K++        + I   ++    K  
Sbjct: 131 LNFMIEELTQKGKSS-IQKELFVRAKDGTVIKIGKFSQQQKKADEVKIFIIKNDALIKRI 189

Query: 188 YAQSGSIDLDRQAI---ILND---GEVHRKS----PISKDISIMKFKSYTLQTESANSST 237
            +Q   I+ D+  +   I+ D   G+V +      P++  ISI  FK    + E    + 
Sbjct: 190 DSQEAEIEQDQWKLKNSIVYDFVAGKVEKYDLMDYPLNLKISIAAFKDIK-KIEEFGIAE 248

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRP 262
           ++ K  +     L NP  +      
Sbjct: 249 LIQKRKELKKVGLSNPKIDTDISSR 273


>gi|313680814|ref|YP_004058553.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153529|gb|ADR37380.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 335

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 73/202 (36%), Gaps = 8/202 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+LR I   +L+  L  + +     +     +  S   +   + ++  Y +P  L +
Sbjct: 2   LQRYLLREILTPYLLGTLLFIGLVTTDLLSSLSGVFLSRGTTWTQVGELVLYRMPYTLGV 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R++EL  +   G + + L+ PVL LA  ++   +++   ++P
Sbjct: 62  ALPLGLVFAVLVALARWIRDSELKAVYAAGIAPVRLLAPVLGLAAFVAAVAWVNAGWVKP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN----NTLQGIFIVDSR 179
           + ++    L  +       S +  N  +           +  P+      LQG+ +V   
Sbjct: 122 EAQARYDDLIYEIYYGHAPSGVLTNAAYAPQGLGVYYARRVYPDDAGGGRLQGVRVVTPD 181

Query: 180 DTQTHKIYYAQSGSIDLDRQAI 201
                 ++ A  G        +
Sbjct: 182 GA----VWSADEGVWKDANWVL 199


>gi|257487385|ref|ZP_05641426.1| hypothetical protein PsyrptA_29198 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 205

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 11/206 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+     D +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLW-HRQGDEFIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
            D R   T    +A+  +   D   +
Sbjct: 177 DDQRHMLTSS--FAKEANFKTDYWEL 200


>gi|118581151|ref|YP_902401.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
 gi|118503861|gb|ABL00344.1| permease YjgP/YjgQ family protein [Pelobacter propionicus DSM 2379]
          Length = 354

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 117/356 (32%), Gaps = 5/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+ R     +L   L +  +    ++ ++++ +      ++  L      +P  
Sbjct: 1   MKIIDRYLGRSFASCWLSVNLILAGLLSFFELAKQLDDIGKGRYDVSDALLYVSLTLPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L  + +N EL  +   G S   +    +  A+L  + L +    
Sbjct: 61  MLEMAPPSALLGSIIALGLLAKNQELTALRAGGISVQRIGWTFMKPAVLTLLVLLLGAQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           I P    T      +  L+ + + L    F+  D+  +I +     N      I+  D+R
Sbjct: 121 IIPTLEQTAWTRR-ETALSKSGTLLPRGGFWTRDERRFINLRTARDNGVQAVDIYEFDNR 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D  T  I+  +   I  +     L+       +     +  +             ++ + 
Sbjct: 180 DALTGYIH-GRETRIGANGN-WELHHVLRKEITEQGDSVRALPRLVLPHLLTPQQTAALT 237

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L     ++S L     +N   R +    Y     ++LT  +      ++S+    + A  
Sbjct: 238 LPPQTLSISELSG-TISNLQKREQNAGRYLLALWQKLTLPVITAAMIMLSLPLVCRPARS 296

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                   I     + F            I Q   +   L+  L  ++   +L  +
Sbjct: 297 ASLGWHIMIGAIFGVVFFYLNQILGYTGLILQVSPFWTTLFPALAVLAGGAILTRR 352


>gi|74316600|ref|YP_314340.1| hypothetical protein Tbd_0582 [Thiobacillus denitrificans ATCC
           25259]
 gi|74056095|gb|AAZ96535.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 356

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 115/368 (31%), Gaps = 23/368 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +  +     L ++ +     ++Q +  +  +         +    +P  
Sbjct: 1   MNLLARYLAGQVLAASGFMLLALLVLFAFFDVVQELGNL-RAGYGFGQATIVVLLNVPGH 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   L  +  N+E  ++  +G S   +      + + L++ + +    
Sbjct: 60  LYEILPVAALIGTLFALARLVGNSEYAVMRVSGLSNWRVAAYFGVIGVWLALLVLLLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      ++    A  ++        L+ + D   +I + +  P+NTL+GI I     
Sbjct: 120 VAPWSDQAAQRYKLSATRSVVAQQFRSGLWVK-DGSTFINVREVMPDNTLRGIEIYGFDQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN---------DGEVHRKSPISKDISIMKFKSYTLQTE 231
                   A   +     +   L          DG   ++S      S++          
Sbjct: 179 EGRLDWIRAAEIATWRGDKTWQLQTVVETRFSADGIRAQRSANLAWRSVLT--------- 229

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                +++L A ++  +  L     +     +    Y      +        I  LI++ 
Sbjct: 230 -PEILSVLLVAPEKMSARALWRYIAHLKANGQKASRYELALWSKFISPFVIPIMMLIAMP 288

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI--PILYLFLFCISSI 349
            A +    R         I   + F +       +  +   P ++   +  L    I+  
Sbjct: 289 FAIQSPRARGTSVKVFFGILAGLGFHLLSRLFGHLGLLNDWPAFVVSALPLLIFLGIALA 348

Query: 350 FLLMIKKK 357
            +  + ++
Sbjct: 349 GIRWVDRR 356


>gi|325297714|ref|YP_004257631.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
 gi|324317267|gb|ADY35158.1| permease YjgP/YjgQ family protein [Bacteroides salanitronis DSM
           18170]
          Length = 371

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 129/354 (36%), Gaps = 8/354 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ I+ V  I + I+   ++   L  I+       IP 
Sbjct: 13  LKRLDRYIIVKFLGTYFFAIALIISISVVFDINENIDRFINNKAPLEAIVFDYYLNFIPY 72

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++S   F+   
Sbjct: 73  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAAIISAVTFMLGT 132

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS- 178
            + PK   T  +   K +   +  Y   N+   +D  +   + +Y   N     F +D  
Sbjct: 133 EVIPKGSVTRLKFEEKYKKKKSADYAR-NIQLEVDSGVVAYMERYENYNKTGYRFSLDKF 191

Query: 179 RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            D +      A+  + D       I+ D  +     + + I+  +     ++ E  +   
Sbjct: 192 EDHKLVSHLTARRITYDTASYHKWIIRDYMIREMRGMKEVITRGERIDSIIKMEPQDFLI 251

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +        L              ++ +  E+H+R+       I   I +  + ++ 
Sbjct: 252 TRGQQETMTSPQLREYIQKQKQRGFANIKEFEVEYHRRIAMSFAAFILTAIGLSLSSRKV 311

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              +      + I L++SF  +  F  I      N    P L +++  I  +F+
Sbjct: 312 ---KGGMGLHLGIGLALSFS-YILFQTISATFAINGNMPPALAIWIPNILYLFI 361


>gi|296104923|ref|YP_003615069.1| lipopolysaccharide export system permease protein LptG
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059382|gb|ADF64120.1| lipopolysaccharide export system permease protein LptG
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 360

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 131/353 (37%), Gaps = 20/353 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-D 177
             + P+     +   A+A    +    ++ L+ +   + ++ I +   ++ L G+ I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGQN-FVYIERVKGDDELGGVSIYAF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           + + +   + +A S   D + +   L+   E    +P     S     ++          
Sbjct: 181 NDERRLQSVRHASSAKFDPEHKQWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLG 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + L  +  ++S L N          +    Y+     ++ Q +   +  L+++      
Sbjct: 241 VVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPMSVAVMMLMALSFIFGP 299

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                   +  + + + +  G+ +GF + +  ++Q    + ++Y     I ++
Sbjct: 300 --------LRSVPMGVRVVTGISFGFVFYV--LDQIFGPLTLVYGIPPIIGAL 342


>gi|213855150|ref|ZP_03383390.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 356

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 123/351 (35%), Gaps = 12/351 (3%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIPTVLPMVTPFCFA 70
             F    + +  +  +  I++ ++ +  + +     L     +   +P  + +  P    
Sbjct: 10  TIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAAL 69

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           +     L  + + +EL+++  +G +R+ +   V+  AI L +        + P+     +
Sbjct: 70  LGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMAR 129

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSRDTQTHKIY 187
              A+A    +    ++ L+ +  ++ ++ I +   +  L GI I    D R  +   + 
Sbjct: 130 NYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAFNDQR--RLQSVR 186

Query: 188 YAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
           YA S   D + +   L+   E   ++P     S     ++           + L  +  +
Sbjct: 187 YAASAKFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALS 246

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           +S L N          +    Y+     ++ Q L   +  L+++                
Sbjct: 247 ISGLHN-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRV 305

Query: 307 PIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              IS    F V    F  +       P    +L    F + S++L++ K 
Sbjct: 306 VTGISFGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRKS 356


>gi|242240954|ref|YP_002989135.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
 gi|242133011|gb|ACS87313.1| permease YjgP/YjgQ family protein [Dickeya dadantii Ech703]
          Length = 356

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 124/357 (34%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +  + YI + I  + +M+   +V ++ +I+ + ++  V   + S+      +   +P  +
Sbjct: 3   RVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGSYSVLGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGNLATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTMAIGEWL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P      +   ++     +    +  L+ +  +D ++ I +    N L G+ I      
Sbjct: 123 APPGEQMARNYRSQMMYGGSMLSTQSGLWAKDGND-FVYIQRVQGENELVGVNIYHFDNQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           ++   + YA S   +     +   +    R +        +    +           + L
Sbjct: 182 SKLLSVRYAASAVYENGVWQLSQVEESDLRSNKQISGSQTIS-GEWKTGLTPDKLGVVAL 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++  L +   N      +    Y+     +L   L   +  L+++          
Sbjct: 241 DPDALSIRGLYD-YINYLKQSDQEASRYQLNMWSKLFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  I IS    F V       +  + + P  +  L      +    +L++K++
Sbjct: 300 PAGVRIVIGISFGFLFYVLDQIFGPLSLVYRIPPVLGALLPSALFLFISIMLLLKRR 356


>gi|167032003|ref|YP_001667234.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
 gi|166858491|gb|ABY96898.1| permease YjgP/YjgQ family protein [Pseudomonas putida GB-1]
          Length = 353

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 132/361 (36%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  ++ + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLMAILAVLGIILGLASLFAFIDEMSDL-SDTYTVMEAGNFVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   +  +   + AQ        +  ++ R  ++ Y+ I+   PN  L G+      +
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEE-YVHINAVQPNGLLLGVTRYRFDN 178

Query: 181 TQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +      +A+      D    +L D           ++     + + +       +T++
Sbjct: 179 ERKIVTSSFARRAQYQDDH--WLLADVRTTYFRGDHTEVVNAPQERWDVSLTPELLNTVI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADKRA 297
           L     +++ L +   +  + +      Y   F  ++ Q +    ++   IS +    R+
Sbjct: 237 LAPESLSITGLWD-YIHYLSDQGLNNARYWLAFWTKVLQPMVTAALVLMAISFIFGPLRS 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKK 356
           +   ++    +F  + + F    G   ++    Q   + P+L  +    I ++  + + +
Sbjct: 296 VTLGQR----VFTGVLVGFVFRIGQD-LLGPSSQVFGFPPLLAVVIPAGICALAGVWLLR 350

Query: 357 K 357
           +
Sbjct: 351 R 351


>gi|294637822|ref|ZP_06716094.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
 gi|291089021|gb|EFE21582.1| membrane protein, YjgP/YjgQ family [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 124/357 (34%), Gaps = 4/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   IP  +
Sbjct: 3   GVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   A+     +    +  L+ + D + +I IS+   + TL G+ I    D 
Sbjct: 123 APQGDQAARNYRAQQMYGGSLLSTQGGLWAK-DGNQFIYISQVVNDRTLAGVSIYTLNDQ 181

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +    + YA + + D  +  +   + E +  +P     S      +           + +
Sbjct: 182 RKLTSLRYATAATFDGKQWKLTQVE-ESNLTNPEQITGSRTLTGVWKTNLTPDKLGVVAV 240

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +  ++S L +          +    Y+     ++   L   +  L+++          
Sbjct: 241 SPDSLSISGLYH-YVKYLQQSGQESNRYQLNLWSKIFAPLSVAVMMLMALSFIFGPLRSV 299

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                    I     F V       +  +   P  I  +      ++    L++++ 
Sbjct: 300 PMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLAISIYLLLRRS 356


>gi|194431684|ref|ZP_03063975.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|194420040|gb|EDX36118.1| putative permease, YjgP/YjgQ family [Shigella dysenteriae 1012]
 gi|320180990|gb|EFW55911.1| Permease Ygh-P2, YjgP/YjgQ family [Shigella boydii ATCC 9905]
 gi|332086635|gb|EGI91775.1| hypothetical protein SB521682_3569 [Shigella boydii 5216-82]
 gi|332088218|gb|EGI93339.1| hypothetical protein SD15574_3351 [Shigella dysenteriae 155-74]
          Length = 359

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 132/366 (36%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + ++   +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVALMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WVLH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|300973447|ref|ZP_07172203.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|301048206|ref|ZP_07195242.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299964|gb|EFJ56349.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300410789|gb|EFJ94327.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291259|gb|EFU50619.1| conserved hypothetical protein [Escherichia coli MS 153-1]
          Length = 359

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETQETSDYLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|325285312|ref|YP_004261102.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
 gi|324320766|gb|ADY28231.1| permease YjgP/YjgQ family protein [Cellulophaga lytica DSM 7489]
          Length = 341

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 125/343 (36%), Gaps = 8/343 (2%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L  V I  ++ + ++I  +  +      +L+     I  +  ++ P    +      + 
Sbjct: 2   LLLFVPIGVMLDLAEKIAKMVRNEAPTLEILEYYMNFIIYIGSLLFPIFLFLSIIFFTSK 61

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +  NTE++ I ++G S    ++P    A +++I +F+    I PK      +   K    
Sbjct: 62  LASNTEIVAILSSGVSFGRFLRPYFMGATIIAILMFVMAMFIVPKASLDYHEFIFKYLKK 121

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY--YAQSGSIDLD 197
                   N++ +L+++ ++ IS ++PN  L   F+++  D      Y   A S      
Sbjct: 122 GKKFQETTNIYNQLNENEFLYISSFDPNRQLGSNFVLEHFDNDDKLAYKLTASSIRWIPK 181

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
                L            + I            +  + + +   A  +N+  L     + 
Sbjct: 182 DTIYRLTGFTSRTVKGNVEVIEKKSRLDTIFDFKIDDLTPVSYVAETKNIFELNKFIEDQ 241

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                  + TY    +KR    +   I  LI++      ++ R+      +   + I+F 
Sbjct: 242 RKKGASNINTYVMAKYKRWALPVSAFILTLIAVSV---SSIKRRGGMGLNLAFGIVIAFV 298

Query: 318 VFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             +    F+ +  K   +P    I+   +F I  ++LL   K+
Sbjct: 299 YIFFDRVFAILAEKAGLSPLIAIIIPNAIFAIIGLYLLKNAKR 341


>gi|319944263|ref|ZP_08018539.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
 gi|319742558|gb|EFV94969.1| permease YjgP/YjgQ family protein [Lautropia mirabilis ATCC 51599]
          Length = 382

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 119/386 (30%), Gaps = 34/386 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+ R I    +   L  + +     ++  ++ +      L   +      +P+ 
Sbjct: 1   MKLMARYLTREIAGGIMAVLLGFLGLFAFFDLINELDDIGQGGYRLPQAVLYVLLGLPSH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L    +N+E   +   G SR   ++ VL L +LL++   ++   
Sbjct: 61  IYELMPVAALIGCIYALAQFAQNSEFTAMRAAGMSRQLALRGVLVLGVLLAVLTAVAGEW 120

Query: 121 IEPKCRSTIKQLSAKAQ-LALTFSYLEENLFFR----LDDD-----LYIKISKYNPNNTL 170
           I P      +QL                 L+ +      D       ++ I     +  L
Sbjct: 121 IAPMAEQRAQQLRMDVLGKGSGVGAFRSGLWLKDSVRGPDGQRLQTRFVNIGTLEADGGL 180

Query: 171 QGIFIVD-SRDTQTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDISIMKFKS 225
             + I +   D +   + +A+ G              L   E  R +      +   + +
Sbjct: 181 SKVAIHEFDTDFRLTAVIHAEHGRYQPAHNGQASSWRLEGVETTRFNVSR---TQTGYDA 237

Query: 226 YTLQTESANSSTIVLK-----------ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
                E    +  V             A D+  +  L    ++     +    Y     K
Sbjct: 238 LHAAVERRPETVWVSDLNPALLSVLAIAPDRMSALALWRYTSHLKENAQNANRYELALWK 297

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-- 332
           ++   L  ++  ++++        VR       +F  +S+  G +       +    N  
Sbjct: 298 KVVYPLAIIVMLMLALPFG--YLQVRAGGIGLKLFFGISLGVGFYIMNGLFSNLGLINTW 355

Query: 333 -PYYIPILYLFLFCISSIFLLMIKKK 357
            P+    +   LF   ++ +L    +
Sbjct: 356 PPWLAVSIPSILFLALALVMLNRVGR 381


>gi|157368809|ref|YP_001476798.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
 gi|157320573|gb|ABV39670.1| permease YjgP/YjgQ family protein [Serratia proteamaculans 568]
          Length = 356

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 116/359 (32%), Gaps = 8/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + +M+   +V ++ +I+ + ++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRKVGQGEYTALSAGMFTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DS 178
            P+     +   A+     +    +  L+ +   D +I I +      L G+ I    D 
Sbjct: 123 APQGDQMARNYRAQQMYGGSLLSTKNGLWAKDGTD-FIYIERVAGEKELSGVNIYHFNDQ 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R  +   + YA S S +     +   D               +    +           +
Sbjct: 182 R--RLETVRYAASASFEDGVWKLSQVDTSDLTNEKQVTGTQTLT-GEWKTNLTPDKLGVV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L     ++S L N          +    Y+     ++   L   +  L+++        
Sbjct: 239 ALDPTSLSISGLHN-YVKYLKQSGQEANRYQLNMWSKVFSPLSVAVMMLMALSFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 298 SVPMGVRVVTGISFGFLFYVLDQIFGPLSLVYNMPPVLGALLPSMLFLLISVYMLLKRK 356


>gi|71908693|ref|YP_286280.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
 gi|71848314|gb|AAZ47810.1| permease YjgP/YjgQ [Dechloromonas aromatica RCB]
          Length = 362

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 129/362 (35%), Gaps = 9/362 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  ++ Y++R    S  +     + +      +  +  V  +  S+          +P +
Sbjct: 5   LNLYQRYLIRETFASVFLVLAAFLALFAFFNFIDELRTVGKAGYSVVHAALFVALSMPGL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L+++ R++E+ ++  +G +   L+  +   A+LL++  F+    
Sbjct: 65  VYELIPIATLIGTLYALSTLARHSEITVLRASGLATSDLLMTLFRAALLLALLTFVIGEA 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      K++ AKA   +      ++  +  D   +I I K  P+  L+G+ I     
Sbjct: 125 VVPFSERLGKEIRAKALSTVIAQSGFDSGLWVKDGRSFINIRKAAPDEPLEGVRIYHFSQ 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +       +   D     L           +  +   +   +         + +++
Sbjct: 185 QNLLESVTDAQAADFEDPDLWRLRGVVRTVLEGDTSRVESTQTGEWRSTVTPTLLAALMV 244

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                +L  LLN   +    + +  E Y     K++   L  ++   +++      +  R
Sbjct: 245 SPERMSLFGLLNYTKHLTENKQKT-ERYEIALWKKVVYPLAALVMVALALPFG--YSHNR 301

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCISSIFLLMIK 355
                  IF  + +   +F+  + +   +     + PI+           +++  L  ++
Sbjct: 302 VGGVSLKIFAGVMLGI-LFYALNGLSSNLGAINSWSPIISATAPSGLFLLVATGMLWWVE 360

Query: 356 KK 357
           ++
Sbjct: 361 RR 362


>gi|226943299|ref|YP_002798372.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226718226|gb|ACO77397.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 353

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 119/365 (32%), Gaps = 20/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   +  S L     +V +A +   +  +  V      L          +P  
Sbjct: 1   MGKLDRYIGASVSLSILAVLGVLVGLALLFSFVDELGDVQGD-YDLAAAAWYVFLTVPQR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L S+  ++EL +I  +G S   ++  V+   ++L +   +    
Sbjct: 60  TYEMLPMGALIGCLIGLGSLASSSELTVIRASGISLGRIVWAVMKPMLVLMVLGGLLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---IVD 177
           + P   +  +   + AQ        +  L+     + ++ I+   P   L G+      D
Sbjct: 120 LAPWAENKAEAHRSLAQGGGEAQTAKHGLW-HRQGNEFVHINAVQPGGVLYGVTRYRFDD 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            R        +A+            L D    R    S +++    + + +        T
Sbjct: 179 QRHMLWSS--FARKAEFRGGN--WQLEDVTTTRFLERSTEVAKAATEQWDILLSPQLLGT 234

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVAADK 295
           +V+     +++ L     +    +      Y   F  ++ Q L    ++   IS +    
Sbjct: 235 VVMDPEALSVTGL-WHYIHYLAEQELNNARYWLAFWGKVLQPLVTAALVLMAISFIFGPL 293

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL---FCISSIFLL 352
           R++   ++    +         VF  F  ++    Q   + P+L + L    C      L
Sbjct: 294 RSVTLGQRLFTGVLAGF-----VFRMFQDLLGPSSQVFGFSPLLAVLLPAGLCALLGVYL 348

Query: 353 MIKKK 357
           + +  
Sbjct: 349 LRRAG 353


>gi|332885237|gb|EGK05488.1| hypothetical protein HMPREF9456_02689 [Dysgonomonas mossii DSM
           22836]
          Length = 664

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 82/205 (40%), Gaps = 4/205 (1%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           +M+    +FI  +  + + +  +        +L ++  Y I  ++P+  P    + +   
Sbjct: 1   MMTFGICLFIVLMQFLWKFVEDLVGKGLDNVVLAELFMYAILNLIPLALPLSLLLASLMA 60

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
             ++    ELL I   G S +  +KP++     +++  F  +N   P+ +  ++ L    
Sbjct: 61  FGNLGERLELLAIKAAGVSLLKTMKPLIIFISCVAVGAFFFQNEAMPRIQVKLRSLMISI 120

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDT-QTHKIYYAQSG-- 192
           +       + E  F+    +  + + K +     L+ + I D+ +      ++   S   
Sbjct: 121 RQKSPELDIPEGSFYSGITNYSLYVKKKDKETRMLKDVMIYDTSEGFDNMSVFVCDSALM 180

Query: 193 SIDLDRQAIILNDGEVHRKSPISKD 217
           SI  ++  ++LN     R +  S+ 
Sbjct: 181 SISSNKDFLLLNLYSGQRFANFSQS 205



 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 95/250 (38%), Gaps = 14/250 (5%)

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF--FRLDDDLYIKISKYNP-NNTLQGIF 174
            N   P  R   K+          F  ++E+     ++  +++   S  +  ++ L  + 
Sbjct: 213 NNQFVPYSRENFKEKKIVIPFNSGFDRMDESNLEGTQISKNIFQLGSSIDSLSSRLDSVN 272

Query: 175 IVDSR--DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           + D +     T+  Y        ++ +   L + E   +    K I+ + F S  L T S
Sbjct: 273 VHDRKVIGKNTYLTYRNSDAYKKVETEETALPNKEQAVEPLKKKTINTIDFDSL-LNTYS 331

Query: 233 AN--SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +  S  +   AN+   S              + +  ++ E+H++       +IF  I  
Sbjct: 332 NDEISRYVGFAANEAESSRFNIMETTQKINMQKNIRMHKVEWHRKFVLSFACLIFFFIG- 390

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY--IPILYLFLFCISS 348
             A   A++R+     P+ +S+ + F V++    I +K+ ++  +     ++L  F +  
Sbjct: 391 --APLGAIIRKGGLGMPVVVSV-LLFIVYYIIDNIGYKMARDGVWEVWQGMWLSSFALFP 447

Query: 349 IFLLMIKKKY 358
           + + +  K  
Sbjct: 448 LGVFLTYKAM 457


>gi|325104566|ref|YP_004274220.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
 gi|324973414|gb|ADY52398.1| permease YjgP/YjgQ family protein [Pedobacter saltans DSM 12145]
          Length = 364

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 120/358 (33%), Gaps = 5/358 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI+R    +F+ +      I+ V  I ++++    S  + + ++ +     IP 
Sbjct: 8   IKLIDWYIIRKYLGTFVFTMAIFTLISVVFDISEKLDDFLKSRATFSQVVFEYYAGFIPF 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            L  + P    +        M   TE++ I  +G S    ++P    A ++ IF      
Sbjct: 68  YLNFLNPLINFISVIFFTAKMADQTEIVPILTSGASFNRFLRPYFVAATVIFIFNIGFNL 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDS 178
            + P+    +  ++ +            N+  +LD + YI +  ++   N+     +   
Sbjct: 128 FVIPETNRLM--INFENTYTKIKDTSRNNVHLQLDSNTYIYMESFDNLRNSGYKFSLEKF 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                 +   A   S D       + +  +     + + +     K  TL  +  +    
Sbjct: 186 DKKDLKEKLMADRISWDSVSHKWKIENYTIRYVDGLKEKMENGTVKDTTLDMKPIDFDIR 245

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +  N   L             ++     E +KR T      +  LI + A   R +
Sbjct: 246 DNIYSAMNFWELNEKIEKEKIRGSGVMVNLELEKYKRWTYPFSTYVLTLIGV-ALSSRKV 304

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                    + I LS  + +F  F+ +       P  I +L   +   +    L IK 
Sbjct: 305 RGGVGLPLGLGILLSFVYILFIQFANVFALKGGLPPIIAVLIPNMLFGALGVYLAIKA 362


>gi|170681358|ref|YP_001745244.1| YjgP/YjgQ permease [Escherichia coli SMS-3-5]
 gi|170519076|gb|ACB17254.1| putative permease, YjgP/YjgQ family [Escherichia coli SMS-3-5]
          Length = 359

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 132/366 (36%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS       + + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTLAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGVGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|167761789|ref|ZP_02433916.1| hypothetical protein BACSTE_00129 [Bacteroides stercoris ATCC
           43183]
 gi|167700295|gb|EDS16874.1| hypothetical protein BACSTE_00129 [Bacteroides stercoris ATCC
           43183]
          Length = 605

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 29  VIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           ++Q L + ++ +      +N+L +   Y   T++P   P    +       +     ELL
Sbjct: 1   MMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTLVPASLPLAILLAALITFGNFGERFELL 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
            +   G S + +++P++    ++    F  +N+I PK ++ +  L    +       + E
Sbjct: 61  AMKAAGISLLKIMRPLIIFISIICCVSFYFQNVIGPKAQTKLWTLLVSMKQKSPEVDIPE 120

Query: 148 NLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQSGSID--LDRQAIIL 203
            +F+   D   + +   N     L  + I +     +  +I  + SG ++   D+Q + L
Sbjct: 121 GVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKSDSGRLEMTADKQHLYL 180

Query: 204 N 204
           +
Sbjct: 181 H 181


>gi|154492560|ref|ZP_02032186.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
           43184]
 gi|154087785|gb|EDN86830.1| hypothetical protein PARMER_02194 [Parabacteroides merdae ATCC
           43184]
          Length = 361

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 118/346 (34%), Gaps = 10/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   S    L  I+       IP 
Sbjct: 5   LKRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  +G S   L+ P    A ++++  F+   
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFVLNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P   +T      K        Y+       ++  +     +Y+  + +   F +   
Sbjct: 125 YIIPPANATRIDFQNKYIKNKKVDYVRSAQ-LEIEPGVIAYFDRYDARSGMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A S   D       L D  +     + + I+       TL    ++    
Sbjct: 184 EDKKMISRLTANSIKYDSLYN-WTLIDYMIRDFDGMREHITEGSRMDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V        S L              ++T++ E+HKR    +   I   I          
Sbjct: 243 VNDCETMTSSELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIG-----ASLS 297

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFL 343
            R+ K    + I + ++    +  F+ +      N    P +  ++
Sbjct: 298 SRKIKGGMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWI 343


>gi|323173776|gb|EFZ59405.1| hypothetical protein ECLT68_2094 [Escherichia coli LT-68]
          Length = 359

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 129/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L   
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLDEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFVLSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|265763912|ref|ZP_06092480.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256520|gb|EEZ27866.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 365

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 132/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP 
Sbjct: 7   IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  +
Sbjct: 67  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P+    R   +    K +       ++      +D  +   I  Y   N     F +
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNIQ----LEIDTGVIAYIDNYQDYNKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+S + D        + D  +     + +  +I++            
Sbjct: 183 DKFVDKKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKE--TIVRGDKMDFIIPMEP 240

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  ++++   + L+   L              ++ +  E+HKR+       I  +I +  
Sbjct: 241 ADFMIMRNQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  +      N    P++ ++    + ++  
Sbjct: 301 ----SSRKTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIA 356

Query: 352 LMIKKKYTK 360
             + +K  K
Sbjct: 357 FYLYRKAPK 365


>gi|82524032|emb|CAI78710.1| hypothetical protein [uncultured Flavobacteriaceae bacterium]
          Length = 358

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 124/361 (34%), Gaps = 6/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  L  + I   + + ++I  +  +   L  ++          
Sbjct: 1   MKILDWYILKRYLFTFFMMLLLFIPIGITVNLAEKIGKMLENEVPLKAIVIFYLNFTVHF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P +  A ++          
Sbjct: 61  AYLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGVSFSRFLRPYMIGASIIGGLALFLGMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P       +   K       +  + N+F +++D+ +I +S ++ NN L   F +    
Sbjct: 121 LTPIASKGFNEFEYKYLYPNRKTTQDVNVFRQINDNEFIYVSSFDLNNKLGINFTLEHIE 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D +      A++           L D        I  ++   + K      +  + + ++
Sbjct: 181 DNKLTYKISAKTIKYIAKDTTYRLVDYVKRTVGKIEDELVFERNKDTLFAFDVEDLTPVI 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A     + L              +  Y    +++ +  +   I  +I++      ++ 
Sbjct: 241 YIAEILPYTELTKFIEKEKTRGSSNIGRYELVLYRKWSLPVSVFILTIIAVAV---SSIK 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN--PYYIPILYLFLFCISSIFLLMIKKK 357
           R+      + I + I+    +         EQ+  P  I + +  +      F L+   K
Sbjct: 298 RRGGMGVNLAIGICIAMVFVFFDKIFGVLAEQSNFPSIIAVWFPNVVFGILAFYLLRNAK 357

Query: 358 Y 358
            
Sbjct: 358 R 358


>gi|300725025|ref|YP_003714351.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631568|emb|CBJ92277.1| putative transmembrane protein, transport [Xenorhabdus nematophila
           ATCC 19061]
          Length = 359

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 119/327 (36%), Gaps = 12/327 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I ++ LM+   +V ++ +I+ + ++  V     +       +   +P  +
Sbjct: 3   GVLDRYIGRTILQTILMTLFMLVSLSGIIKFVDQLRKVGQGEYTALSAGIYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +    +
Sbjct: 63  QIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVLLTMVIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+     +   ++     +     + L+ +   D ++ I     +N L G+ I     +
Sbjct: 123 APQGEQLARNYRSQKMFGGSLMSTTKGLWAKDGRD-FVYIQSVGKDNALNGVSIYHVDEN 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTLQTESANSSTIV 239
            +   + YA S   D D Q   L+  E    +   + I S      +  Q        + 
Sbjct: 182 RKLLSVKYAASAVYDKDNQQWKLSQVEESDLTKFGRIIGSQRVSAEWNSQLTPEKLGVVS 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L  +  ++  L +          +    Y+    K++   L   +  L+++         
Sbjct: 242 LDPDALSIRGL-HQYITYLKLGQQDAGRYQLNMWKKVFAPLSVAVMMLMALSFIFGP--- 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYII 326
                +  + +   +  G+  GF + +
Sbjct: 298 -----LRCVPMGFRVVVGISMGFLFYV 319


>gi|152990851|ref|YP_001356573.1| hypothetical protein NIS_1107 [Nitratiruptor sp. SB155-2]
 gi|151422712|dbj|BAF70216.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 338

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 140/358 (39%), Gaps = 20/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +  SFL   L +  IA +I  ++ ++L S    SL  L K+  ++ P +
Sbjct: 1   MPKLLRYLGNHLYESFLSYFLPLFGIASLIFFIKIVSLTSIVQLSLVDLAKLYIFITPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L  ++ + E +   + G S   +++ +  LA+LLS+ LFI   +
Sbjct: 61  LFFTIPVVFFIAAVTALHKLSFDYETIAFFSLGISPTKIMRYLTLLAVLLSLLLFIIAYM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+    +++   + +       L+ + +     + ++ + K + NN  + + + +  D
Sbjct: 121 LIPQG-KQLEKGFYRYKKTEANINLKPSEYGHKFGNWFVYVQKKDKNNLFENVVLYNF-D 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +  +   ++  + D  +  + L   + +  +     +  + F    L            
Sbjct: 179 NEQERFITSKKATFDNSQYGLKLTLYDGNAYTYKKGILDQITFTKMDL-----------F 227

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +       ++P     +Y  +     +  F      W+   +  ++ +  A    +  
Sbjct: 228 DTSTSYYFQYIDP----IHYWEKAFLNKQRAFDMLFFLWIA--LLPVLGMPYAGMIGIHH 281

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R     +F+ +  +  +++GF++++ K       +  + L+ F    +F   I  +Y
Sbjct: 282 PRYHKGGVFLKVLFALFIYFGFAFLLSKTLYYYSLL-FMALWFFGGIYLFHKTIMSRY 338


>gi|167753885|ref|ZP_02426012.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
 gi|167658510|gb|EDS02640.1| hypothetical protein ALIPUT_02170 [Alistipes putredinis DSM 17216]
          Length = 372

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 113/359 (31%), Gaps = 6/359 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YIL     ++  +   I+ +  +   +++I+  + +   L  I+       IP  
Sbjct: 14  KILDRYILGKFLSTYFFAIAMIIVVVVIFDYVEKIDNFTETKAPLKAIIFDYYLNFIPFF 73

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     +      + M   TE++ + + G S   L+ P    A++++         
Sbjct: 74  INQFSGLFTFIAVIFFTSKMAYQTEIVAMLSGGMSFRRLMWPYFLGALIIASLSLGLNLW 133

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P  + +      +          ++N++ +++   +  I  Y+  +     F + +  
Sbjct: 134 LIPVSQRSCVAFENQYIPRKARFQYDKNIYRQIEPGTFAYIRNYSKESNQASFFSLEEYE 193

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS-KDISIMKFKSYTLQTESANSSTI 238
                    A     + + +              +  +  +  +     +  +       
Sbjct: 194 SGAMTASLEAAEVRFNPETKRWSARRYTTRTFDSLGVETFTQHRNLDTLINLDVNELGRT 253

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  N+  L        +   + +   + E H R    +   I  LI +        
Sbjct: 254 DQLIKTMNIVELNQFLEQQRSKGSDSINIIQVEQHARYAYPVGTFILTLIGVS--LSSRK 311

Query: 299 VRQRKKIH-PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           VR    +H  I I+L  S+ +F  F     K    P +I +    +  +     L  K 
Sbjct: 312 VRGGTGLHIGIGIALCFSYILFIRFFEEFAKSGTLPPWIAVWIPNILYLCIAVYLYRKA 370


>gi|291284362|ref|YP_003501180.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764235|gb|ADD58196.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|320656363|gb|EFX24270.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661734|gb|EFX29142.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666885|gb|EFX33861.1| Permease YjgP/YjgQ family protein precursor [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 359

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|330874293|gb|EGH08442.1| hypothetical protein Pgy4_05807 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 213

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 11/206 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILLKISGYLIP 58
           M   + YI + +  + L     I+ +     +   I+ +   S T +L   L       P
Sbjct: 1   MVKLDRYIGKSVLLAILAVLGIILGLV---SLFAFIDEMGDISDTYTLADALSYVMLTAP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    P    +     L ++  ++EL I+   G S   ++  V+   +LL +   +  
Sbjct: 58  RRVYDTLPMAALIGCLIGLGTLASSSELTIMRAAGVSIGRIVWAVMKPMLLLMVAGVLVG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---I 175
             + P   +  +   + AQ +         L+ R  ++ +I I+   PN  + G+     
Sbjct: 118 EYVAPYAENQAQAARSLAQGSGDAQSARHGLWHRQGEE-FIHINTVQPNGLMLGVTRYRF 176

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
            D R   T    +A+  +   D   +
Sbjct: 177 DDQRHMLTSS--FAKEANFKTDYWEL 200


>gi|237752929|ref|ZP_04583409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375196|gb|EEO25287.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 344

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 8/227 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + ++ +   + F    L + FIA V+  ++   +      S   LL +  Y +PT+L 
Sbjct: 2   RIKNFLFQSFAQVFFPIFLVLFFIASVVIFIRIAGVTFVVKISFLELLTLYFYTLPTMLF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +     L+ ++ + EL ++   G +   ++K    +A+L S+ LF+   I+ 
Sbjct: 62  FVIPLSFFVACVLGLSRLSFDYELPVLFALGMNPKKIVKIFFPIALLASVSLFVLSLILT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +Q   + + ++  + L+   F +   +  + + K   N+T + I ++  +   
Sbjct: 122 PLSDIAYRQFLEERKSSIDVN-LQAGEFGQKLGEWLVYVQK-GKNSTYENIVLLSLQAKG 179

Query: 183 THK--IYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKS 225
           + K  + +A+  +I      +   L+DG+++RK  +S  +  + F  
Sbjct: 180 SQKDGLVFAKQANIGNVDGVMEAHLSDGKIYRK--VSDGVERISFDE 224


>gi|218701754|ref|YP_002409383.1| hypothetical protein ECIAI39_3474 [Escherichia coli IAI39]
 gi|227887686|ref|ZP_04005491.1| inner membrane protein [Escherichia coli 83972]
 gi|301019929|ref|ZP_07184064.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|218371740|emb|CAR19591.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli IAI39]
 gi|227835082|gb|EEJ45548.1| inner membrane protein [Escherichia coli 83972]
 gi|299882027|gb|EFI90238.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|307555074|gb|ADN47849.1| putative permease [Escherichia coli ABU 83972]
          Length = 359

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|320451334|ref|YP_004203430.1| hypothetical protein TSC_c22790 [Thermus scotoductus SA-01]
 gi|320151503|gb|ADW22881.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
          Length = 336

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 124/366 (33%), Gaps = 44/366 (12%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L+ +   +L+  L  V +     +     ++ S    +  + K+  Y +P  L +
Sbjct: 2   LGRYVLKEVLVPYLVGVLLFVALLTFDLLSSLSGVLLSRGAGVEAIAKLILYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G     L+KP+  LA+L+S F  ++   + P
Sbjct: 62  ALPLGLVFAILVGLARLIRQSELKAAYAAGVPPWALLKPLALLALLVSFFNLVNLAELRP 121

Query: 124 KCRSTIKQLSAKAQL--ALTFSYLEENLFFRLDDDLYIKISKYNPN---NTLQGIFIVDS 178
           K      Q  A+           L + L+      +Y    +  P    N L GI +VD 
Sbjct: 122 KALEAYDQHLARLLYGEGGLSGVLRKQLYAAEGLGVY-YAEEVRPEVGQNRLYGIRVVDE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN--SS 236
           R     +IY  Q G  D +                         F+ Y L+       + 
Sbjct: 181 R----GRIYSGQEGVWDKEGW----------------------HFRGYVLEGGKPKPFAG 214

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE------FHKRLTQWLFPVIFGLISI 290
           T+      +    L + +P +     EL E  + E       ++RL   L       + +
Sbjct: 215 TLPFPTQFRPKESLGSRDPYDSTTLRELWERSQVEPSARFALYRRLADALGGF---FLGL 271

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           VAA      R+        + L   + V W  S  + + + NP  +  L    F    ++
Sbjct: 272 VAAALGLSFREAAWAFLSIVLLIFGYYVLWTLSAQLARYDVNP-LLAFLPNAFFAALGLY 330

Query: 351 LLMIKK 356
           L    +
Sbjct: 331 LTWRLR 336


>gi|307566072|ref|ZP_07628530.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345260|gb|EFN90639.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 427

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 119/355 (33%), Gaps = 6/355 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI++    ++L + L I+ I+ V    + ++  +        I+       IP 
Sbjct: 67  IGRLDWYIIKKFIGTYLFAILLIISISIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 126

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   I++S   F   +
Sbjct: 127 YSNLFSPLFVFIAVIFFTSKLASNSEIIAMLAAGVSFKRLMRPYMISCIVISALTFYLNS 186

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDS 178
            + P   + I+Q           +   EN+  ++  +    I  ++ +     G  +   
Sbjct: 187 FVIPHG-TVIRQNFESLYRNNKKNTSAENVQLKVAKNTVAYIQYFDDHYKRGYGFSLAKF 245

Query: 179 RDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            + +      A      ++   +    +++ ++ +   + + I+    K   L  E  + 
Sbjct: 246 ENKKLVSHMTAMEIQYDTVADTKYHWKVSNYKIRQLKGLKEHITTGDEKDTILLMEPTDL 305

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +        LLN      +     +  Y  EFHKR+       I  +I +  + +
Sbjct: 306 VYSKGQQETFTSPELLNYISKQNSRGLSNVVQYEVEFHKRIAMSFSAFILTIIGLSLSAR 365

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +        +            +    +    K    P     +  F+F   + F
Sbjct: 366 KRKGGMGLYLGIGLGLSFSYILLQTVSATFAIKANTPPILAAWIPNFIFVFIAYF 420


>gi|197287278|ref|YP_002153150.1| permease [Proteus mirabilis HI4320]
 gi|227357022|ref|ZP_03841393.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|194684765|emb|CAR46795.1| putative permease [Proteus mirabilis HI4320]
 gi|227162825|gb|EEI47785.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 359

 Score = 92.3 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 138/356 (38%), Gaps = 24/356 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I +S LM+   +V ++ +I+ + ++  V     +       +   I   +
Sbjct: 3   GVLDKYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQGDFTTLDAGIYAVLNILKDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +     
Sbjct: 63  QIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +   A+  +  +       ++ + D + +I I++    N +QGI + +   +
Sbjct: 123 APQGEQYARNYRAEKIMGNSLVSTNRGMWAK-DGNQFIYINRIKSQNEMQGITLYNFDNN 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN-----DGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            +   + YA S + D D++  +L      D    +K    K +S+     +  +      
Sbjct: 182 RKLETVRYASSATYDPDKKVWLLKQVEQSDLTSPQKITGKKQVSL----EWQTRLTPEKL 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           S + L  +  ++S L            +    Y   F K++   +   +  L+++     
Sbjct: 238 SVVALDPDALSISGLY-QYVKYLKQSGQESANYELNFWKKIFAPISVAVMMLMALSFIFG 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGF-SYIIHKIEQNPYYIPILYLFLFCISSIF 350
                    +  + + L +  G+ +GF  YI++++      +   Y     ++++ 
Sbjct: 297 P--------LRTVPMGLRVVTGIAFGFLFYIVNEVSGRLSLV---YGIPAVVAALV 341


>gi|213962435|ref|ZP_03390697.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
 gi|213954761|gb|EEB66081.1| permease YjgP/YjgQ family protein [Capnocytophaga sputigena Capno]
          Length = 358

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/363 (12%), Positives = 128/363 (35%), Gaps = 9/363 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F +  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFIMIVLFIPIGIIVDLSEKVDKMIERKAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           I P   +       K  + +   S    +L+ +  D+ Y+ +S +N          +   
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESV--SDLYNQFSDNDYLYVSSFNYQEQKGYNFSVEHF 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +   A++       +   L +    +       +            +  +   +
Sbjct: 179 DGIKMKEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDILVKRDQLDTIFNFKPDDLMPM 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A ++NL  L              L  Y    ++R        I  LI +      ++
Sbjct: 239 EYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSV 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            ++      + + + + F   +         + +    P++ + L      ++ +L+++K
Sbjct: 296 KKRGGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVVLPNLIFLTLAILLLRK 355

Query: 357 KYT 359
             +
Sbjct: 356 VRS 358


>gi|117619151|ref|YP_858152.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560558|gb|ABK37506.1| putative permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 356

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 135/358 (37%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S L+  L +V +A +I+ ++++  V      +   L      +P   
Sbjct: 3   GILDRYIGRVIFMSVLLCELTLVGLAALIKYVEQLKSVGEGNYDMLSALYYVLLSMPKEA 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    +
Sbjct: 63  VLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRD 180
            P  +     + A A      +     ++ R  ++ ++ I+    +  L GI +   + +
Sbjct: 123 APIAKRMADDIKAGALSEGRLTVSAYGVWARDGNN-FVNINGVRNDGALTGITLYRFTPE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIV 239
            +   I  AQ G    ++   +L   +V R     + +S  + +  ++ +        + 
Sbjct: 182 RKLIDILQAQEG--VFEQHHWLLKQVQVTRFDDPRQIMSETQPQMEWSSELTPKQLGVVS 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +   +  ++ LL+      +   +    Y+ E  ++L   L  V   L++   +    R+
Sbjct: 240 IDPENLPVAGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +    + +  I    ++       F  I       P    I    LF   S ++L  K
Sbjct: 299 VSMGARMLMGIMTGFAVYVSDRV-FGPISLVYAVPPILAAIAPSLLFGGISFYILSRK 355


>gi|207108562|ref|ZP_03242724.1| hypothetical protein HpylH_03299 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 206

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 4/199 (2%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
            S   L+++  Y +P  +  + P  F       L+ ++ + ELL+  + G S   + K  
Sbjct: 4   VSFLDLVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAF 63

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
           + L++L+S  L +   I+ P  +S       + +       +    F +   D  + + K
Sbjct: 64  VPLSLLVSAILLVFSLILIPTSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWLVYVDK 122

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
              NN+   + +  ++         AQ G+I+       LN  + H        +  + F
Sbjct: 123 -AENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKMRKVDF 181

Query: 224 KSYTL--QTESANSSTIVL 240
           +   L  + +S NS+    
Sbjct: 182 EELHLRNKLKSFNSNDAAY 200


>gi|260857119|ref|YP_003231010.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257755768|dbj|BAI27270.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
          Length = 359

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +   VL   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVVLVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I  D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIKDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                   R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 FTFTAP--RSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|256823037|ref|YP_003147000.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
 gi|256796576|gb|ACV27232.1| permease YjgP/YjgQ family protein [Kangiella koreensis DSM 16069]
          Length = 354

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 121/362 (33%), Gaps = 13/362 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI + I  + +M+   +  I  +  ++         +      L  S  L P  
Sbjct: 1   MNILRFYIGKTILATSVMTLFTLAIIRVLFSLIDESGDFGKGSYQFVDGLAYSLLLSPQY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + +   L  +  ++EL ++   G + + ++   L   ++L  F       
Sbjct: 61  IYEFFPMAILIGSIAGLGLLASHSELTVMRAAGKTTMQIVGSALSYGLILIAFAIFLGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + PK     + +  +A L       E+ ++ +    + + I +   ++ + G+ I     
Sbjct: 121 VAPKTTRMAEDIRNRAILGEQLLKAEQGVWVKDGSKM-VHIDEMLGSDRMDGVSIYQFDS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTESANSST 237
             +   I +A S  I        L +G  ++       I+  +F    +    +  N S 
Sbjct: 180 QQKLESIIHAPSALISEG--VWRLQNG--YQSYLTDTGINRERFDAMEWRTNIQMDNLSV 235

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADK 295
           +       ++  L               ++Y   F +++ Q L   I  +++   V    
Sbjct: 236 LSDDPETLDIMSLYR-YREYLANNGLDTQSYDLAFWRKIIQPLSTAIMIVLAASFVFGPM 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R++    + +  +   ++  F V       +  +   P +   +       +  + L+ K
Sbjct: 295 RSVSMGARVLVGVLTGMAYFFAVR--TFGPVSLVFGMPAFFGAILPPAIFAAGAWYLLRK 352

Query: 356 KK 357
             
Sbjct: 353 AG 354


>gi|329956780|ref|ZP_08297349.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
 gi|328523819|gb|EGF50906.1| permease, YjgP/YjgQ family [Bacteroides clarus YIT 12056]
          Length = 605

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 29  VIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           ++Q L + ++ +      +N+L +   Y   T++P   P    +       +     ELL
Sbjct: 1   MMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTLVPASLPLAILLAALITFGNFGERFELL 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
            +   G S + +++P++    ++    F  +N+I PK ++ +  L    +       + E
Sbjct: 61  AMKAAGISLLKIMRPLIIFISIICCVSFYFQNVIGPKAQTKLWTLLISMKQKSPEVDIPE 120

Query: 148 NLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQSGSID--LDRQAIIL 203
            +F+   D   + +   N     L  + I +     +  +I  + SG ++   D+Q + L
Sbjct: 121 GVFYDEIDGYNLYVKHKNRKTGMLYDVLIYNFEKGFENAQIIKSDSGRLEMTADKQHLYL 180

Query: 204 N 204
           +
Sbjct: 181 H 181


>gi|167561902|ref|ZP_02354818.1| hypothetical protein BoklE_05005 [Burkholderia oklahomensis EO147]
 gi|167569154|ref|ZP_02362028.1| hypothetical protein BoklC_04865 [Burkholderia oklahomensis C6786]
          Length = 382

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 125/380 (32%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRVYEKYFARQIYVTFVFVLFAFSGLFFFFDLIGELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  V   M  N+E  I   +G +    ++ +L + + + I  ++    
Sbjct: 61  FYEIIPVAALISSIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ + + +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGQLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +         +  A+ G         +L D    + + +S               
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGRYQP-PGHWLLTDVTDTQLTNVSGAGGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++L
Sbjct: 240 ARQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A                I L +SF +F      I  +  N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+      CI     L   K
Sbjct: 358 PLTAALPGCIYLALGLFALK 377


>gi|323966510|gb|EGB61943.1| permease YjgP/YjgQ family protein [Escherichia coli M863]
 gi|327251763|gb|EGE63449.1| hypothetical protein ECSTEC7V_3615 [Escherichia coli STEC_7v]
          Length = 359

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGTIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRFALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWSSYQIMVNLGLLFALSAPVTALGLPIAFMLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|323978946|gb|EGB74026.1| permease YjgP/YjgQ family protein [Escherichia coli TW10509]
          Length = 359

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|189461313|ref|ZP_03010098.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
 gi|189431842|gb|EDV00827.1| hypothetical protein BACCOP_01963 [Bacteroides coprocola DSM 17136]
          Length = 378

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 122/357 (34%), Gaps = 14/357 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+     ++  +   I+ IA V  + + I+   ++   L  I+       IP 
Sbjct: 20  LKRLDRYIIVKFLGTYFFAIALIISIAVVFDVNENIDHFINNKAPLKAIVFDYYLNFIPY 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   L+ P +  A ++S   F+   
Sbjct: 80  YTNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRLMVPYMISAGIISAVTFVLGT 139

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   ++   K + A     ++      +D  +   + +Y+  +     F +
Sbjct: 140 EVIPTGSVTRLKFEERYKKKKSADYARNIQ----LEVDSGVVAYMERYDAYSKSGYHFSL 195

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D       I+ D  +     + + I+        ++ E  +
Sbjct: 196 DKFEDHKLVSHLTARRATYDTTMYHRWIIRDYMIREMRGMREYITRGDRLDSIIKMEPQD 255

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +        L              ++ +  E+H+R+       I   I +    
Sbjct: 256 FLITRGQQETMTSPQLKEYISKQKQRGFANIKEFEVEYHRRIAMSFAAFILTSIGLSL-- 313

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             +  + +  +             +  F  I      N   +P + +++  I  +F+
Sbjct: 314 --SSRKVKGGMGLHLGIGLGLSFSYILFQTISSTFAINGNMMPAIAVWIPNILYLFI 368


>gi|261819787|ref|YP_003257893.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
 gi|261603800|gb|ACX86286.1| permease YjgP/YjgQ family protein [Pectobacterium wasabiae WPP163]
          Length = 358

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 123/354 (34%), Gaps = 11/354 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + + +   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGKTIFTTIITTLFMLVSLSGIIKFVDQLRKVGQGEYSALGAGLYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  ETFFPMAALLGALLGLGQLATRSELVVMQASGFTRLQIATAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDSRD 180
            P+     +   ++     +    +  L+ +  +D +I I +   +  L G+ I      
Sbjct: 123 SPQGEQMARNYRSQMISGGSMISTQGGLWAKDGND-FIYIERIVGDKELSGVNIYHFDEQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
            +   + YA S   D DR    L+  +    S   +   S      +           + 
Sbjct: 182 NKLLSVRYAASAEFDKDRNVWNLSQVDESDLSDGKQIGGSQTLSGEWKTNLTPDKLGVVA 241

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L+ N  ++  L +          +    Y+     ++   +   +  L+++        +
Sbjct: 242 LEPNALSIRGL-HDYAKYLKQSGQESGRYQLNMWSKIFAPVSVAVMMLMAVSFIFGP--L 298

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           R       I I +S  F     F Y++++I +    +  +   L  +    + +
Sbjct: 299 RSVSAGSRIVIGISFGF-----FFYLLNEIFRPLSLVYGIPPILGAVLPSSVFL 347


>gi|218132104|ref|ZP_03460908.1| hypothetical protein BACEGG_03732 [Bacteroides eggerthii DSM 20697]
 gi|217985754|gb|EEC52095.1| hypothetical protein BACEGG_03732 [Bacteroides eggerthii DSM 20697]
          Length = 605

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 76/181 (41%), Gaps = 5/181 (2%)

Query: 29  VIQIL-QRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           ++Q L + ++ +      +N+L +   Y   T++P   P    +       +     ELL
Sbjct: 1   MMQFLWKYVDEMVGKGLEMNVLAQFFFYSALTLVPASLPLAILLAALITFGNFGERFELL 60

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
            +   G S + +++P++F   L+    F  +N+I PK ++ +  L    +       + E
Sbjct: 61  AMKAAGISLLKIMRPLIFFISLICCVSFYFQNVIGPKAQTKLWTLLVSMKQKSPEVDIPE 120

Query: 148 NLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRDT-QTHKIYYAQSGSID--LDRQAIIL 203
            +F+   D   + +   N     L  + I +     +  +I  + SG ++   D+Q + L
Sbjct: 121 GVFYDEIDGYNLYVKHKNRETGMLYDVLIYNFEKGFENAQIIKSDSGRLEMTADKQHLYL 180

Query: 204 N 204
           +
Sbjct: 181 H 181


>gi|118602882|ref|YP_904097.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567821|gb|ABL02626.1| permease YjgP/YjgQ family protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 360

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 118/365 (32%), Gaps = 19/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI++ +        L  + I      L+ +  +  +  ++  + K     IP V
Sbjct: 1   MKILDRYIVKTMAFYTSAVMLVWLGIYAFFNFLEEVTFIGQANYTVFEVTKYVISDIPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     + +   L  +   ++L++I + G S + +   V+  A++    +     +
Sbjct: 61  VYSYSSVIILLGSLLALGHLASTSQLVVIRSAGVSIMQISNIVVRAALMFIAIVIFIGEL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + L AKA         ++  + +  + L+I + K     + Q + ++  R 
Sbjct: 121 VTPITIEYAESLRAKALGENITFKNQQGFWLKDSE-LFIHVKKNFDGKSFQDVTLIKLRA 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANS--S 236
             T       S S   +   + L+    ++          S   F+ Y++Q         
Sbjct: 180 PDTLDSIV-HSDSAISNGDNLELSQSIHYQFGKDGNLTTFSENNFEKYSVQVSFNKKLIE 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAAD 294
            +     + +   L               + +  E +KRL + +  +   L S   V   
Sbjct: 239 NLKKDPRELSTWHLYQQ-IRFLTINHLAADIFEVEIYKRLMKPITLIAMILFSMLFVFGS 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            R     +     + +SL        G    +             Y      S   LLM+
Sbjct: 298 LRDASLGKNIFLGLMMSLFFELASRIGGVLSLR----------FDYNHFLSASIPTLLML 347

Query: 355 KKKYT 359
              + 
Sbjct: 348 VFVWA 352


>gi|222034702|emb|CAP77444.1| hypothetical protein LF82_487 [Escherichia coli LF82]
 gi|312947540|gb|ADR28367.1| hypothetical protein NRG857_14785 [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 359

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|242279363|ref|YP_002991492.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242122257|gb|ACS79953.1| permease YjgP/YjgQ family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 376

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 115/360 (31%), Gaps = 13/360 (3%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L+       +       I  +  +  R++    +   +  +LK     +P +   
Sbjct: 10  LASYVLKQNIFLMCVCLGVGTGIYLLSDLFDRLDDFIEAGLGMGTILKYFLVKMPLIFSQ 69

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F +     L  M R+ ELL +   G S I  ++  +  A++ S    +   +I  
Sbjct: 70  ILPAVFLISMIVQLCVMARSKELLALRTGGLSLIWFLRFFVIYAVIWSFGQLLFSQVIGV 129

Query: 124 KC-RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVD--SR 179
              +   +      + ++    + +N++ + +    ++  +  P  N  + I + +    
Sbjct: 130 YGEQEAYRIWKEDVRKSMLDKRVLKNIWLK-EGRFVVEAKEVMPFGNRAKDITVYEFAEG 188

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           +    ++  ++S  +   +    L +         +     +      L           
Sbjct: 189 NGGIKRVITSESAEV-SSKYGWKLENAVELSPDKFASQKHPIFTMPIKLNLNVFKVVDPD 247

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +      L  L +            ++   + +H   ++W +   F L+++       + 
Sbjct: 248 IDPAQLPLWQL-DQVIEQLKLSGSSVDRLITAWH---SKWAY--AFSLLTMALVSLALVT 301

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
                   I + L+I F  +  F              PI+  +L  I    L + +  + 
Sbjct: 302 ITENIYLNIGLGLAIIFTYYALFMVGAS-AGDTGALPPIVAAWLGNILVSSLALGRIAWV 360


>gi|192358887|ref|YP_001981939.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
 gi|190685052|gb|ACE82730.1| putative permease, YjgP/YjgQ family [Cellvibrio japonicus Ueda107]
          Length = 352

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 119/358 (33%), Gaps = 8/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI R +  +  ++ L  + + ++   + ++  +     S    + +S   +P  
Sbjct: 1   MRKITGYISRTVFSAIALTLLVFISLDFIFSFIDQLGKIRGGYTSREAFIYMS-LTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P+   + +   L  +  ++EL +I   G S   +    L  A +  +   I    
Sbjct: 60  LYELIPYSCLIGSLVGLGLLANSSELTVIRAAGVSVKRIAWMALRPAFVFIVAAVILGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P             +     +    N++ R + + Y+ +    P+  + G+      +
Sbjct: 120 VAPYTEQMADNRRLLVRDNWVRT--TTNMWNR-EGNEYMHVQAVLPSGVIYGLTRYQFDE 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +          +I  +       D  V R         ++  + +    +    + +V+
Sbjct: 177 QRRLVAASYTKQAIYQEEGYWQEEDVAVTRIGEQGVSNDLLPSRRWETPLKPNLLNILVM 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRAL 298
              D ++S L N   N    +      Y   F ++  Q L  +   LI+   +    R++
Sbjct: 237 DPEDMSISNL-NYYSNYLKEQNLRPGNYALAFWQKTLQPLATMSLVLIAISFIFGPLRSV 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              ++    I   +                    P +  ++ + +  +  +FLL   +
Sbjct: 296 TMGQRIFTGIVFGVGFQLLQKLMGP-ASMVFGFAPVFAVLIPIVICILVGVFLLSRAR 352


>gi|293416424|ref|ZP_06659063.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
 gi|291431780|gb|EFF04763.1| hypothetical protein ECDG_03180 [Escherichia coli B185]
          Length = 359

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQAMQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRK--------SPISKDISIMKFKSYTLQTE 231
                   YA+S +I  D +  IL+ G  H+K                   F S  L+  
Sbjct: 181 DLSLESYIYARSATI-KDDKMWILH-GVNHKKWLNGKETLDTSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|284037837|ref|YP_003387767.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
 gi|283817130|gb|ADB38968.1| permease YjgP/YjgQ family protein [Spirosoma linguale DSM 74]
          Length = 358

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 131/346 (37%), Gaps = 9/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV-SSSTESLNILLKISGYLIPT 59
           MK  + YIL+   ++++   + IV +  +I   ++++    +      IL       IP 
Sbjct: 1   MKLLDAYILKRFLQTYIFVVMVIVLVVVMIDYTEKVDNFHKTHAPGNEILFNYYLNFIPY 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               ++P    + T  + + +   TE++ I ++G S + L+ P +  A +L++  +   N
Sbjct: 61  WANYISPLMVFIATVFLTSRLAARTEIIAILSSGVSFVRLLLPYVLGATVLAVATYFMVN 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
            + PK   T      K            N+  ++  + Y  +  YN  +NT     +   
Sbjct: 121 YVIPKANKTRIAFEIKYINDAYNFSGR-NVHLKIAPNTYAYLESYNNQSNTGYKFTMERV 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              Q  +   A     D  ++   + D ++   +   + ++       TL  +  + S+ 
Sbjct: 180 EGNQLKQKLSADHIEWDAKKKKWTVFDYKIRTINGPQETLTPGAKIDTTLNLKPDDFSSD 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                      L +      +   + +ETY  E + R T+    +I  +I ++       
Sbjct: 240 FNLYETLTRPELNDHIELLQSRGADGVETYLLEKYSRDTRPFAIIILTVIGVI-----MS 294

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFL 343
            R+ ++     ++L       +  F  +   I ++    PI+ ++L
Sbjct: 295 ARKSRRGVGWQVALGFFLAFTYLLFFMLAKGIAESGNLNPIVAVWL 340


>gi|78486087|ref|YP_392012.1| permease YjgP/YjgQ [Thiomicrospira crunogena XCL-2]
 gi|78364373|gb|ABB42338.1| YjgP/YjgQ family protein [Thiomicrospira crunogena XCL-2]
          Length = 370

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 133/374 (35%), Gaps = 22/374 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   E Y+ R +    L+  + ++ I    + + +I  VS    ++      +   +P  
Sbjct: 2   MNLIERYLGRVLVSHTLLVLMVLLIILGFSEFMIQIGKVSDD-YTVAKGAMYTVLKLPVY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + T   L S+  + EL I+  TG S   +   V+  A +L +   +    
Sbjct: 61  GYEIFPVALLIGTLIGLGSLANHAELTILRVTGWSIRRIFFAVMKSAFILWVCAAVIGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K++  +A          ++ F+  D + YI + +   +     + I    D
Sbjct: 121 VAPASESYAKKMRGEALHKNFSIGSTDD-FWMRDGERYIHVGRVISDTQFYDVTIYSLED 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVH--------RKSPISKDISIMKFKSY------ 226
            Q  +  +A +          +L                SP  K    ++FK Y      
Sbjct: 180 GQLSEQVHANTARYSEKEGQWVLYSLNRKVLDWQKMPALSPDRKTWKKLQFKQYDEVEGA 239

Query: 227 -TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
             L        T+ ++     ++ L +   +         E Y+  F ++L      VI 
Sbjct: 240 VDLPVSPTLLQTLHVETRYMGITDLFS-YISFLEENGLDAEAYKLAFWRKLAMPF--VIL 296

Query: 286 GLISIVAADKRALVRQRKKIHPIFIS--LSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           G+I++V        RQ      IF+   + +SF +       +  + Q P  +      +
Sbjct: 297 GMIALVFPLIFGSQRQVSIGQRIFVGIMIGMSFHLLNQIFGNLSVVYQLPAIMGAFLPSI 356

Query: 344 FCISSIFLLMIKKK 357
             +S+ FLLM + +
Sbjct: 357 VLMSAAFLLMRRLR 370


>gi|325971216|ref|YP_004247407.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
 gi|324026454|gb|ADY13213.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
          Length = 420

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 79/193 (40%), Gaps = 2/193 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                +I R    SFL++  F  FI ++ QIL     +         +L++    IP  L
Sbjct: 8   SLVYRHIGREYLLSFLVAFFFFFFIFFINQILLIAQRILLKQVDYFSVLQLVLLSIPQFL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF     ++ V+  ++ N E+L I ++G S   +  P++ +++  S+  F++ +  
Sbjct: 68  LYTFPFSSLTASSMVIGDLSGNNEILAIRSSGISLKHVFIPIIIISLAFSMLTFLTADKA 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      ++L       L    L  N    + +   + ++K    NT+  I + ++   
Sbjct: 128 LPWSTKKYRELYTDLMRDLPTLELMANSTNTIAN--TVMVNKGVEGNTVHDIILFETSSV 185

Query: 182 QTHKIYYAQSGSI 194
           +  +I  A    +
Sbjct: 186 RGGQILSAPKAEV 198


>gi|293412357|ref|ZP_06655080.1| predicted protein [Escherichia coli B354]
 gi|291469128|gb|EFF11619.1| predicted protein [Escherichia coli B354]
          Length = 359

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 129/369 (34%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    +   L          +  +      P     L +    ++  
Sbjct: 291 FTFSAPRSPGMGSRLAVGVIAGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALS 350

Query: 350 FLLMIKKKY 358
            +    +++
Sbjct: 351 LVYWYDRQH 359


>gi|94311741|ref|YP_584951.1| permease YjgP/YjgQ [Cupriavidus metallidurans CH34]
 gi|93355593|gb|ABF09682.1| predicted permease [Cupriavidus metallidurans CH34]
          Length = 387

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 130/377 (34%), Gaps = 39/377 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  +E Y  R I   F      ++ +     +L  +  V     SL     +     PT 
Sbjct: 4   LSVYERYFARLIYGVFAFILFAVLALFVFFDMLSELESVQGKYTSLIAFFHVM-LEAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI    
Sbjct: 63  IYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALATFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD-----------LYIKISKYNPNNT 169
           I P      +++  +A  A   S     ++ +  D             ++ +    P+ +
Sbjct: 123 IGPAAEQYAQKIKLEAIGATVSSGFRSGVWVKDRDREPEEKGAGEITRFVNVQGLRPDQS 182

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQ----------AIILNDGE-VHRKSPISKD 217
           + G+ I +  +D +   I  A+ G     +            I L DG+    +  ++ D
Sbjct: 183 ITGVTIYEFDKDYRLRVIRVAKEGKYQGGQSWQLNDVNETRFIELRDGQPAANRDALAPD 242

Query: 218 IS--IMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
                ++F +  + +E      S ++++  + +   L      +     +  + Y   F 
Sbjct: 243 FRGEQVQFPNILMHSELTPQILSVLLVQPENMSTVNLFR-YIRHLRDNKQDTQRYEIAFW 301

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           K++   L   +   +++  A                + + +  G+  G S+  H      
Sbjct: 302 KKVVYPLTLFVMVALALPFAYL--------HARAGAVGVKVFGGIMLGLSF--HLSNTLF 351

Query: 334 YYIPILYLFLFCISSIF 350
            ++ +L+ +   +S++ 
Sbjct: 352 SHVGLLHTWPPIVSALV 368


>gi|317486218|ref|ZP_07945052.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
 gi|316922517|gb|EFV43769.1| permease YjgP/YjgQ family protein [Bilophila wadsworthia 3_1_6]
          Length = 357

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 112/356 (31%), Gaps = 9/356 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ +      L +    + +  +  + +R++    +  S+ ++L      +P V
Sbjct: 1   MSLLFRYLTKNNAMILLPTLAVGIGLYVLTDLFERLDNFIEAGLSVGMVLTYFVVKMPLV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F + T   L  M R+ EL  +   G S   +   ++   I            
Sbjct: 61  ISQILPVIFLLSTVIQLCIMARSRELTALQAGGISLGVVANSMILCGIFWGGVQLGFSEY 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +         +    + +     + + ++++F  D D  + +   +P     G    +  
Sbjct: 121 LGVAGERESARIWQEEVRKKNLAATVLKDVWFT-DGDWIVSLGTLDPQAHGTGFSGYELS 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D         Q+ +   +     L D  V+     +++             E+    +  
Sbjct: 180 DDGLSIKRIVQASTFTAEPNHWALQDVRVYTPDTFTQEQEPDFVLPLRQDPETFRLVSTG 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            K     L  L +   +        +E  R+ +H +L      ++   ++          
Sbjct: 240 TKPQQLPLWQLGD-AISQLKSSGSNVEALRTAWHAKLAYAASILVMAFVATAIV-----S 293

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            +      + ++L  +F  F     +   + Q     P L  +   + ++F    +
Sbjct: 294 WKDNIYIAVTVALLCTFLYFAV-YTLGTTLGQRGILHPFLAAWTANLIALFFAFWR 348


>gi|320195129|gb|EFW69758.1| Permease Ygh-P2, YjgP/YjgQ family [Escherichia coli WV_060327]
          Length = 359

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 132/366 (36%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|331654590|ref|ZP_08355590.1| putative permease [Escherichia coli M718]
 gi|331047972|gb|EGI20049.1| putative permease [Escherichia coli M718]
          Length = 386

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|91977435|ref|YP_570094.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
 gi|91683891|gb|ABE40193.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB5]
          Length = 361

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 14/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y       S L     +  +   +  +  +        S  ++ + S Y +P +
Sbjct: 3   MNTLGRYFAARFVTSALGVFFGLFVLLVFVDYIDLLRRAGGLAVSALVIAQASFYRVPQL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R+ EL+I    G S    + P L+ A+ L +F     N 
Sbjct: 63  LERLMPFCILIGGMTCYLALSRSLELVIARAAGLSAWEFVSPALWSALALGVFASAVFNP 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQGIFI 175
           +    +   KQ+ A+     + S  + + F       +    I  ++       L GI +
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDASGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182

Query: 176 V-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                D Q      A+   ++      +L D  V R +  S  +    F         A 
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPGH--WLLRD--VRRYTLDSAPVQEDTF-RLPTALTLAQ 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L +    + +        YR ++HK L +    ++  ++ + A+ 
Sbjct: 238 VRNSFATPESVSFWQLPSYIRASESS-GFATSGYRLQYHKLLAKPF--LLAAMVMLAASV 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +   +   F ++          +    +         C+  +   +
Sbjct: 295 SLRFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|73542370|ref|YP_296890.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
 gi|72119783|gb|AAZ62046.1| permease YjgP/YjgQ [Ralstonia eutropha JMP134]
          Length = 383

 Score = 91.9 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 135/373 (36%), Gaps = 35/373 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ +E Y  R +   F+     ++ +     +L  +  V+    SL   + +     PT 
Sbjct: 4   LRVYERYFARQVYGVFVFILFAVLSLFVFFDLLSELENVNGKYTSLIAFVHVL-LQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI    
Sbjct: 63  IYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALITFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--------LYIKISKYNPNNTLQG 172
           I P+     +++  +A  A   S     ++ +  D          ++ ++   P+ T+ G
Sbjct: 123 IGPRAEQFAQKIKLEAIGATVSSGFRSGVWVKDRDKDPAGGEITRFVNVAGLRPDQTITG 182

Query: 173 IFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------DI 218
           I + +     +   I   + G      Q+ +L+D    R S + +               
Sbjct: 183 ITVYEFDAQYRLRVIRVVKEGRYQ-GAQSWLLSDVNETRFSELRQPGTASRDGLAPEFRA 241

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             ++F S T+ +E +    +++L   ++  +  L     +     +  + Y   F K++ 
Sbjct: 242 EQVRFPSVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQRYEIAFWKKVV 301

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
             L   +   +++  A                + + +  G+  G S+  H       ++ 
Sbjct: 302 YPLTLFVMMALALPFAYL--------HARAGAVGVKVFGGIMLGLSF--HLSNTLFSHVG 351

Query: 338 ILYLFLFCISSIF 350
           +L+ +   +S++ 
Sbjct: 352 LLHTWPPIVSALV 364


>gi|261416540|ref|YP_003250223.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372996|gb|ACX75741.1| permease YjgP/YjgQ family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327353|gb|ADL26554.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 366

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 124/373 (33%), Gaps = 24/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y++    + FL+     V I  VI  +  I    S    +  +       +P +
Sbjct: 1   MK-FSRYLIWNFLKMFLIVVCGAVLIFVVIDFVGNIKTWLSR--DMKAVTDYYLSYLPYI 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L ++TP    +     + +M R+ E+  + ++G S    + P+ FL +L+SI  +     
Sbjct: 58  LYLITPVALFIAVLASVGNMARHLEMSAMQSSGQSPFKTLLPIFFLGVLMSIGSYEMSEH 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
             P       ++            ++E     F   + + +     Y+  N L    ++ 
Sbjct: 118 WLPDANHKRFEIMETNAQKRKNPRIKEKQDFTFIDSEKNSWFF-KHYSGKNKLGRDVVLL 176

Query: 178 SRDTQT-------HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ- 229
            R+            I + +  S+  D       +G  HR       + +   +  +++ 
Sbjct: 177 VRERGRLVERYDVRSIRWIEKDSVTKDG-FWRFENG-FHRVFKKDGSVDVFPVRQKSMKG 234

Query: 230 --TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                 N      +  D+  S ++    +      E      +    + +     +I  L
Sbjct: 235 KVNTHPNDLINERQLPDEMDSKMVKARIDVLRRSGEDTRAMETALQFKYSAHWMNLIVLL 294

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FC 345
           I   AA      R         + L + F  +     I  K+ +N    P    +   F 
Sbjct: 295 IG--AALCHRYSRSGGLSQKFGVGLLLVFSYYILER-IGLKMGENGALSPFWAAWNSHFI 351

Query: 346 ISSIFLLMIKKKY 358
            + +  +M+ + +
Sbjct: 352 YAGLAFVMLYRSF 364


>gi|53718605|ref|YP_107591.1| putative permease [Burkholderia pseudomallei K96243]
 gi|167814687|ref|ZP_02446367.1| putative permease protein [Burkholderia pseudomallei 91]
 gi|167909936|ref|ZP_02497027.1| putative permease protein [Burkholderia pseudomallei 112]
 gi|52209019|emb|CAH34959.1| putative permease protein [Burkholderia pseudomallei K96243]
          Length = 383

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 124/381 (32%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+ G         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQP-PGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|305664654|ref|YP_003860941.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
 gi|88707355|gb|EAQ99601.1| hypothetical protein FB2170_00060 [Maribacter sp. HTCC2170]
          Length = 341

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 122/346 (35%), Gaps = 14/346 (4%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L  + I  +  + ++I  +  +    N ++         +  ++ P    +      + 
Sbjct: 2   LLLFIPIGIMANLAEQIGKMIDNDAPTNEIIIYYVNFTIYIGSLLFPIFLFLSIIFFTSK 61

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +  NTE++ I ++G S    ++P L  A ++++ + +    I P       +   K    
Sbjct: 62  LASNTEIVAILSSGVSYNRFLRPYLIGASIVALIMLVMAMFIVPNASIGYNEFKFKYLKK 121

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS--RDTQTHKIYYAQSGSIDLD 197
                +  N+F +L++  +I +  ++P       F  +    D        A S      
Sbjct: 122 GKQDRVTSNIFNQLNESDFIYVKSFDPARQNANQFTFERFNEDNTLDFKISANSIRWIEK 181

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFK---SYTLQTESANSSTIVLKANDQNLSFLLNPN 254
                L     ++K  +  D +I++ K         +  + + +   A  +NL  L    
Sbjct: 182 DSTYRLTK---YKKRKMVGDSAIIETKNRLDTLFTFKIDDLTPVSYIAETKNLFELNRFI 238

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            N        +  Y    ++R    L   I  +I++      ++ R+      +   + +
Sbjct: 239 ENQRRKGASNINNYVLVKYRRWALPLTAFILTIIAVAV---SSVKRRGGMGINLAFGIGV 295

Query: 315 SFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           +F   +    F  +  +   +P    I+   +F + + +LL   K+
Sbjct: 296 AFIYIFFDKVFGTLAEQAGFSPLLAVIIPNVVFGVLAFYLLQNAKR 341


>gi|307139669|ref|ZP_07499025.1| hypothetical protein EcolH7_16278 [Escherichia coli H736]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|304311790|ref|YP_003811388.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
 gi|301797523|emb|CBL45743.1| Predicted permease YjgP/YjgQ [gamma proteobacterium HdN1]
          Length = 352

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 117/357 (32%), Gaps = 8/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI   +  S     L IV +  V   +  +  + +  + +   L+     IP  
Sbjct: 1   MRLLDRYIGVSVLTSVAGMLLLIVGLDVVFSFIGELEDLKNQYQ-MPQALQYILLTIPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L  +   +EL +I   G S + ++   +   +L+ +   +    
Sbjct: 60  VYDYVPVATLIGCLIGLGMLANTSELTVIRAAGVSVMRIVWSAVKPVLLVVVGALVLGQY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDS 178
           + PK      Q      +  + +    N F+  + D +  ++    +  + G+  ++ D 
Sbjct: 120 VVPKT-EQYAQGLRTLWIDGSDTISSRNGFWYREGDEFFHVNAIQTDGVVYGLARYVFDG 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +  +  YA+ G  + D     L +    R        + M+  ++  Q      S +
Sbjct: 179 -DQRLLEAEYAERGVFEGDH--WRLENVRRTRFDQDHTQYATMESSTWRSQITPQLMSLV 235

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           VLK    +L+ L               + Y + F K+  Q    ++   I+I        
Sbjct: 236 VLKPTALSLTDLYTFARYRDQQSISSGQFYYA-FWKKTLQPATTIVMVFIAISFIFGPLR 294

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                +     I + + F         I  +   P  I         +     L+ +
Sbjct: 295 SVTMGQRLITGIIVGLVFTYAQDMLGHISVVYNVPPLIAAGLPIAIFLGVGIKLLRR 351


>gi|301325677|ref|ZP_07219138.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|300847532|gb|EFK75292.1| conserved hypothetical protein [Escherichia coli MS 78-1]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  + +N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLAKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFMLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|120434961|ref|YP_860647.1| hypothetical protein GFO_0597 [Gramella forsetii KT0803]
 gi|117577111|emb|CAL65580.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
          Length = 341

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 119/345 (34%), Gaps = 9/345 (2%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M  +  + I   + + ++I+ +  +      +             ++ P    +      
Sbjct: 1   MMLVLFIPIGITVNLAEKIDKILENEVPFIEVAYYYLDFTIYFANLLFPIFLFLSVIWFT 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
           + +  NTE++   ++G S    ++P L  A ++ I   +    + P+      +   +  
Sbjct: 61  SKLAMNTEIVAFLSSGVSFYRFLRPYLIGATIVCISALVLAMYLAPQASKGFNEFKYQYL 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSRDTQTHKIYYAQSGSIDL 196
                +    +++ +++D+ YI  S + P +     F +      +      A +     
Sbjct: 121 KRGEQTQETSDVYRQINDNEYIYASHFQPKSKSARNFTLEHFEGNELKFKISASNLRYSE 180

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
           +     L+  +          I  M+     L  E    +     A   N + L      
Sbjct: 181 EDSLYKLSRVDKRIIGKEEDSIMFMRSLDTILPFEFDELTPESYIAETLNYTELNEFIEK 240

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
                   +  Y    +KR +  +   I  +I++  A   +  R+      + + ++++F
Sbjct: 241 ERRRGSGNINRYLVVAYKRWSIPISAFILTIIAVAVA---SFKRRGGMGVNLAVGITLAF 297

Query: 317 GVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKK 357
            +F  F  +   + +   + P++ ++     F + ++ LL   K+
Sbjct: 298 -IFIFFDKVFGTMAEQSTFSPLIAVWFPNIVFGVLAVVLLFRAKR 341


>gi|126441903|ref|YP_001058063.1| hypothetical protein BURPS668_1013 [Burkholderia pseudomallei 668]
 gi|126221396|gb|ABN84902.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 383

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 124/381 (32%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYERYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+ G         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQP-PGHWLLTDVTDTQLTSLAGNGAASPVDTLNPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|300931863|ref|ZP_07147160.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331664593|ref|ZP_08365499.1| putative permease [Escherichia coli TA143]
 gi|300460286|gb|EFK23779.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|331058524|gb|EGI30505.1| putative permease [Escherichia coli TA143]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|306816678|ref|ZP_07450810.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|331659261|ref|ZP_08360203.1| putative permease [Escherichia coli TA206]
 gi|305850243|gb|EFM50702.1| hypothetical protein ECNC101_08669 [Escherichia coli NC101]
 gi|315297644|gb|EFU56921.1| conserved hypothetical protein [Escherichia coli MS 16-3]
 gi|331053843|gb|EGI25872.1| putative permease [Escherichia coli TA206]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|121591646|ref|ZP_01678888.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121546494|gb|EAX56709.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 338

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 124/341 (36%), Gaps = 6/341 (1%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M  +  V ++ +I+ ++++  V   +  L   L      IP  + M  P    +     L
Sbjct: 1   MVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDVEMFFPMAALLGALIGL 60

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
            ++  ++EL+++   G S++ +   VL  AI L I + +      P+ +   + + A A 
Sbjct: 61  GALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQKMARDMRAFAT 120

Query: 138 LALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLD 197
                  +   ++ R  +D +I I+K    +           + +   + +++      +
Sbjct: 121 SGGAIMSVRTGVWARDAND-FIFIAKVENEHLYGLNLWRFDENKKLSTVIFSEQVDYVAN 179

Query: 198 RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNP 255
            +  ++ D  + R      +IS      Y  +T  A    + + +K  + +L+ L +   
Sbjct: 180 NE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVTVKPEELSLTGLSD-YV 236

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
           +      +    Y     +++TQ +   +  L+++                   +    S
Sbjct: 237 HYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGARILSGVIAGFS 296

Query: 316 FGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 297 FYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 337


>gi|189485655|ref|YP_001956596.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287614|dbj|BAG14135.1| permease YjgP/YjgQ family protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 361

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 127/371 (34%), Gaps = 24/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI +   + FL +   I  +  + ++ ++ NL   +     ++L      +P  
Sbjct: 1   MKILYKYITKIFVKIFLFTTAVIALVGIISELFRQTNLYIDNKTPFYLILIHLLSDMPWW 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +++N E+  I   G +   +I     +  ++    F  +  
Sbjct: 61  LIQALPISALLALLFALGDLSKNNEITAIKAAGINISRIIILFFIMGFVIGTGDFAIKEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYN-PNNTLQGIFI 175
           I PK     K +  +       +   E  F+ L      +  I I   N   N ++ I +
Sbjct: 121 IVPKTSLYNKAIEKEKIQKEKINIKTE--FYSLIVPALSNTRITIDHLNTEENVMKNIAV 178

Query: 176 VDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
               D  +   +  A+ G  + D  + +L +G +   +    +     F+ Y        
Sbjct: 179 EKYSDKFKIEHLILAEVGIWEND--SWLLKNGIIRNFNANFWN--ETYFEQYNSNIHIKP 234

Query: 235 S----STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +   +     N+  L     N      +     R   + R       ++  +I I
Sbjct: 235 EHMAMAIQDVNYETMNMHAL-KKYINQLRLFGQTTVRERIILNIRFAAVYAYIVVMMIGI 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCI 346
             A       +  KI    ++++ +  ++WG   I   + +N    P +  +L    F  
Sbjct: 294 PFAIGFEN--KLGKILSSTLAMTAAL-IYWGTQAITKSLGENLILSPFIAAWLPNLIFSA 350

Query: 347 SSIFLLMIKKK 357
             I+LL+  KK
Sbjct: 351 IGIYLLIKVKK 361


>gi|145300688|ref|YP_001143529.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853460|gb|ABO91781.1| predicted permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 356

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 135/358 (37%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S L+  L +V +A +I+ ++++  V      +   L      +P   
Sbjct: 3   GILDRYIGRVIFMSILLCELTLVGLAALIKYVEQLKSVGEGNYDMINALYYVLLSMPKEA 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    +
Sbjct: 63  VQFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMILVGLMGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRD 180
            P  +     + A A      +     ++ R  ++ ++ I+    +  L GI +   + +
Sbjct: 123 APIAKRMADDVKAGALSEGRLTVSAYGVWARDGNN-FVNINGVRNDGALTGITLYRFTPE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK-SYTLQTESANSSTIV 239
            +   I  A+ G    ++   +L   ++ R    ++ +S  + +  ++ +        + 
Sbjct: 182 RKLIDILQAREG--VFEQHHWLLKQVQITRFDDPAQILSETQAQMEWSSELTPKQLGVVS 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +   +  ++ LL+      +   +    Y+ E  ++L   L  V   L++   +    R+
Sbjct: 240 IDPENLPVAGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +    + +  I    ++       F  I       P    I    LF   S ++L  K
Sbjct: 299 VSMGARMLMGIMTGFAVYVSDRV-FGPISLVYAVPPILAAIAPSLLFGGISFYILSRK 355


>gi|157155522|ref|YP_001464443.1| YjgP/YjgQ permease [Escherichia coli E24377A]
 gi|193067447|ref|ZP_03048415.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|260869741|ref|YP_003236143.1| hypothetical protein ECO111_3808 [Escherichia coli O111:H- str.
           11128]
 gi|157077552|gb|ABV17260.1| putative permease, YjgP/YjgQ family [Escherichia coli E24377A]
 gi|192959404|gb|EDV89839.1| putative permease, YjgP/YjgQ family [Escherichia coli E110019]
 gi|257766097|dbj|BAI37592.1| conserved predicted membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323178688|gb|EFZ64264.1| hypothetical protein ECOK1180_2420 [Escherichia coli 1180]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 129/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I  D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIKDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                   R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 FTFTAP--RSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|317402625|gb|EFV83184.1| membrane protein [Achromobacter xylosoxidans C54]
          Length = 392

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 122/346 (35%), Gaps = 25/346 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  + ++ +     ++  ++ V     S+  LL +    IPT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNV-GDKFSMMALLYMQALAIPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWIVTIPLMIGAALLSEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNNTLQGIFIV 176
           + P       + +   +       L    +F+          I I+    +  + G+ + 
Sbjct: 120 VTPWAEMKSGEANLMFRGKAGGDRLNSGYWFKEPTANGGTRIINIAALQGDGQVTGVTLY 179

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS------------PISKDISIMKF 223
           +  +D     +  A +G        ++L D    R              P +    ++K 
Sbjct: 180 EFKKDLTLSVLSTAPNGLFAHGD--LVLKDVSETRLDDNAAETLADARPPKNPPAVVVKV 237

Query: 224 KSYTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
              T+ T  +       VL     ++  LL+      N + +      +   ++L     
Sbjct: 238 PERTVDTTLSAERLLARVLTPERMSIVTLLDYVDYLRNNQLQYGRQVVA-LWRKLAYPFT 296

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
            ++  +I+I A       R+      +FI + +  G F      ++
Sbjct: 297 LLV--MITIAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALN 340


>gi|313203772|ref|YP_004042429.1| permease yjgp/yjgq family protein [Paludibacter propionicigenes
           WB4]
 gi|312443088|gb|ADQ79444.1| permease YjgP/YjgQ family protein [Paludibacter propionicigenes
           WB4]
          Length = 367

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 127/349 (36%), Gaps = 16/349 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    ++  S + I+ I+ V  I ++++   S    L  I+L      IP 
Sbjct: 11  LKRIDTYIIKKFLGTYFFSIVLILSISVVFDITEKLDNFVSHNAPLKAIVLDYYLNFIPF 70

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M +P    +      + M  NTE++ I ++G S   L+ P +  A +++   F    
Sbjct: 71  YMNMFSPLFTFIAVIFFTSKMATNTEIIAILSSGVSFRRLMLPYMISAAVIATISFTLGG 130

Query: 120 IIEPKCRSTI----KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
            + P     +     +   + + +   +   E     +   + + I ++  +N     F 
Sbjct: 131 FVIPHGTKKMLDFEDKYVRQIKQSNATNLQME-----VAKGVIMYIGRFEVSNNTGYQFS 185

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           ++  + +T                +  +++      + + + I+    K  T+  +    
Sbjct: 186 LEKFEGKTLASRLTAETITWDSLYSWKISNYLQRDFNGMREQITKGISKDTTIMVQPEEF 245

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +A   ++  L +            ++ +  +++KR +  L   I  LI +     
Sbjct: 246 YITAAEAPQMSIVKLGSYLKRQRERGVGNIKLFEDDYYKRFSMPLAAFIMTLIGVSL--- 302

Query: 296 RALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPILYLFL 343
               R+ +    + + + ++   ++  FS +      N        +++
Sbjct: 303 --SSRKVRGGMGLHLGVGLALSAIYILFSAMSTSFSVNGSMSAFAAVWI 349


>gi|170018762|ref|YP_001723716.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|297517383|ref|ZP_06935769.1| hypothetical protein EcolOP_07055 [Escherichia coli OP50]
 gi|300916914|ref|ZP_07133617.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300923636|ref|ZP_07139664.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300950817|ref|ZP_07164703.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|300958360|ref|ZP_07170501.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|312972760|ref|ZP_07786933.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|169753690|gb|ACA76389.1| permease YjgP/YjgQ family protein [Escherichia coli ATCC 8739]
 gi|242378535|emb|CAQ33321.1| ybl135 [Escherichia coli BL21(DE3)]
 gi|284923006|emb|CBG36098.1| putative permease [Escherichia coli 042]
 gi|300314944|gb|EFJ64728.1| hypothetical protein HMPREF9547_04074 [Escherichia coli MS 175-1]
 gi|300415884|gb|EFJ99194.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300420077|gb|EFK03388.1| hypothetical protein HMPREF9548_01829 [Escherichia coli MS 182-1]
 gi|300449912|gb|EFK13532.1| conserved hypothetical protein [Escherichia coli MS 116-1]
 gi|310332702|gb|EFP99915.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323936016|gb|EGB32311.1| permease YjgP/YjgQ family protein [Escherichia coli E1520]
 gi|323941919|gb|EGB38098.1| permease YjgP/YjgQ family protein [Escherichia coli E482]
 gi|332344938|gb|AEE58272.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|325269119|ref|ZP_08135739.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
           16608]
 gi|324988506|gb|EGC20469.1| hypothetical protein HMPREF9141_0948 [Prevotella multiformis DSM
           16608]
          Length = 405

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 123/361 (34%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + YI+R    +++ + L I+ IA V    + ++  +        I+       IP 
Sbjct: 45  IGILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPY 104

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIKRLMRPYMISCVLIAGLTFYLNS 164

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
            + P     R   + L   ++   +   ++      +  +    I  Y+       G  +
Sbjct: 165 FVIPHGTVIRQNFESLYRNSKKNTSAENVQ----LYVSKNTTAYIQHYDNQYKRGYGFSL 220

Query: 176 VDSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           V  +D +      A      ++   +    L++ +      + + I     K   L  E 
Sbjct: 221 VKIKDKKIVSHMTAMEIQYDTVADTKFHWRLSNWKTRTLKGLKEHIQSGASKDTVLLMEP 280

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      +        LL+      +     +  Y  EFHKR+       I  +I +  
Sbjct: 281 TDLVYSKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSL 340

Query: 293 ADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + ++   R+      + I L++SF  +          I+ +   +   ++     + I  
Sbjct: 341 SSRK---RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQSDTPPLLAAWIPNIIFAVIAY 397

Query: 352 L 352
            
Sbjct: 398 F 398


>gi|331643680|ref|ZP_08344811.1| putative permease [Escherichia coli H736]
 gi|331037151|gb|EGI09375.1| putative permease [Escherichia coli H736]
          Length = 386

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFVALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|237747611|ref|ZP_04578091.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378973|gb|EEO29064.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 381

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 129/385 (33%), Gaps = 31/385 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y L  I RS L      + +     ++  ++ V      L  +L       P  
Sbjct: 1   MKILQRYFLSQILRSVLFVLFAFLGLFAFFDLIGELSSVGRGGYQLQHVLIYILLGFPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF   + T   L     N+E  I+  +  S +     +  + ++  +F F+   +
Sbjct: 61  IYELMPFAVLIGTIYALAMFASNSEYTIMRVSSLSTLDACWMLAKVGLVFLVFTFLVGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD---DDL--------YIKISKYNPNNT 169
           I P       +                 ++ +     D +        ++ + K  P+ T
Sbjct: 121 ITPVSARVATEFRNNLIGRAVGDGFRTGMWSKDTIRKDGIDGPVIGSRFMNVKKMQPDGT 180

Query: 170 LQGIFIVDSRDT-QTHKIYYAQSGSIDLD---------RQAIILNDGEVHRKSPISKDIS 219
           L+ I + +  D  +  K   A++     +            +   + +  +    +  ++
Sbjct: 181 LEQIRLYEFNDNLELTKTVSAKNARYLGNHEWQLNEVVESHLTAANTKNKKFPDSAPSLN 240

Query: 220 IMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             K  S  +         S I + AN  +   L   N  +     +   +Y+  F K++ 
Sbjct: 241 TKKLDSLIMVSDITPDILSVISVDANKMSAYELAIYN-QHLVENKQDATSYQMAFWKKI- 298

Query: 278 QWLFPV-IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---P 333
             ++P  +F ++++         R       IF  + I        +   H    N   P
Sbjct: 299 --IYPFSVFVMMALALPFAYLHFRSGGVSLKIFSGIMIGVAFILINNLFSHVGLLNTWPP 356

Query: 334 YYIPILYLFLFCISSIFLLMIKKKY 358
           +   ++   LF +S++  L   +++
Sbjct: 357 FLTAVIPSALFFLSAVIALWWVERH 381


>gi|26249547|ref|NP_755587.1| hypothetical protein c3716 [Escherichia coli CFT073]
 gi|254162933|ref|YP_003046041.1| hypothetical protein ECB_02855 [Escherichia coli B str. REL606]
 gi|26109955|gb|AAN82160.1|AE016766_248 Hypothetical protein c3716 [Escherichia coli CFT073]
 gi|253974834|gb|ACT40505.1| conserved hypothetical protein [Escherichia coli B str. REL606]
 gi|253978989|gb|ACT44659.1| conserved hypothetical protein [Escherichia coli BL21(DE3)]
 gi|309703415|emb|CBJ02754.1| putative permease [Escherichia coli ETEC H10407]
          Length = 386

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|317493504|ref|ZP_07951925.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918447|gb|EFV39785.1| YjgP/YjgQ permease [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 137/364 (37%), Gaps = 24/364 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y++R I   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MKIFSRYLIRNIFIGFAAAAGLLIPLFTTFNLMNELDDVSPGGYHWTQAVVVVLMTLPRS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PF   +     L  ++++ EL  I  TG S   +    L   ++L++ L   +  
Sbjct: 61  LIDLGPFIALLGGIVGLGQLSKSMELTAIRTTGFSIFRISIVALCAGLMLTVSLGAIDEW 120

Query: 121 IE-PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I  P  +  ++  +A   L  +   +  N+ +    + ++ +   + +N   G+ I   R
Sbjct: 121 IASPLEQRALQMKNAAIALDESNDSVG-NILWARQGNEFVTVKSLSEDNQPVGVEIFYYR 179

Query: 180 -DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTE 231
            D       YAQ  +I LD    +L+     R     + +   +       F   TL+  
Sbjct: 180 PDRSLESYIYAQKATI-LDGNIWMLSGINEKRWVSGKETVETKESLQWKSIFTGMTLKEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +  SST  +K  +Q +++L N +        +    ++    ++L + +  +   L++I 
Sbjct: 239 TMPSSTFSIKQLNQYITYLQNTD--------QPSIEFKIALWQKLGRAILTLAMILLAIP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH---KIEQNPYYIPILYLFLFCISS 348
                ++ R       + I + +    +  +  +++       N   + +         +
Sbjct: 291 F--TFSVPRSPGLGSRLAIGVIVGLFTYISYQIVVNVGLLFSLNAAIVTLTPPAFILAIA 348

Query: 349 IFLL 352
           + L+
Sbjct: 349 LVLV 352


>gi|24213174|ref|NP_710655.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45656313|ref|YP_000399.1| hypothetical protein LIC10413 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193889|gb|AAN47673.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45599547|gb|AAS69036.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 386

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 117/363 (32%), Gaps = 11/363 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  + Y+     + F+ + + +  I  +  +   +   +++      +     Y IP +
Sbjct: 25  LRILDKYLFGEFFKIFIGTVILLTGIMLLSLVNDNLRNFTATKAPRYHVALFLVYSIPKI 84

Query: 61  LPM-VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +   V            +   + N EL+ +   G S   ++ P++   IL+ I + ++  
Sbjct: 85  ISTTVVSMSLMFSICFTVGQFSVNKELVSMMAAGVSFFRIVTPLILFGILMWIIMLLATE 144

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIF--IV 176
           +I        K         +         F     + +  +  Y+P+   + G F  I 
Sbjct: 145 LIVRPVNKLAKIEHDTLTEGMGTLANSVYQFHVKGKEGFYYLYFYDPDKDEINGGFNYIR 204

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDG-EVHRKSPISKDISIMKFKSYTLQTESANS 235
              D     +  +     + + +   +    E H  + +         +      E  + 
Sbjct: 205 LRPDGSPETVISSLKAKYNYETKLWKMKKVEEWHFDNDLKLSSQETYEEKEYELPEEPSY 264

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +   + ++   F L         +        +E H      +  +I  LI  +A   
Sbjct: 265 FKVPAGSVEEMNLFQLKEEEKRRIQKGLAYGDVLTEKHSVFALPMMTIIVTLIGTIA--- 321

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI--LYLFLFCISSIFLLM 353
               ++   +  + I++ +   +++ F+     + +N    P   +++       +   M
Sbjct: 322 GYFTKKTAGVASLGITIGVVL-IYYIFNSAGKSLGENGVIPPFAGVWITPSLFLGLCFWM 380

Query: 354 IKK 356
            ++
Sbjct: 381 FRR 383


>gi|114326914|ref|YP_744071.1| hypothetical protein GbCGDNIH1_0250 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315088|gb|ABI61148.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 355

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 127/360 (35%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E Y      ++  +S + +  +  +++ +Q++  V      +          IP  
Sbjct: 1   MKK-ERYAAMAALKAVGLSAIALTALFSLLEFVQQLASVGQGRYGMLDAAIYVALTIPYR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T   L  + RN EL  +   G S   +I  V+  +I L + LF+    
Sbjct: 60  LLQVFPVSMLIGTLLGLGGLARNGELTALRGLGMSERRIILSVIAFSIPLMVILFLMAQF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           + P  +   +   + A    T    ++  F+   D  ++ I  +  ++    I I   + 
Sbjct: 120 VIPPAQREAQTWRSNALPDTTALRSQD-SFWAYGDRHFLNIQHFEHHDEPYNIDIFSFAP 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D + H+  +AQS  I  + +  +L+D  V  ++ +   +                  T  
Sbjct: 179 DGELHRYLHAQSADILPNDR-WVLHD--VLSRTLVDGQLRKAHLDRLDWTPFLTPQQTQF 235

Query: 240 LKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           L+     +  L L    ++   R      Y  E   +++  L  +   + +         
Sbjct: 236 LRLRPDAMPPLALWRYVHSLKQRGLQAIRYEQELWAKISIPLTMMAMVIAATPFVFGGGR 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           V+       +  ++ + F +    S ++   +  NP    +    L     I L   +++
Sbjct: 296 VQNTGAFIALGAAIGVVFTLVQQISGHLDVLLNLNPAVTALTPPVLLMWLGIDLFYRRQR 355


>gi|297623245|ref|YP_003704679.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297164425|gb|ADI14136.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 374

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 110/366 (30%), Gaps = 38/366 (10%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR    + L S L    +A       R+  +      L  +L      +PT + 
Sbjct: 2   RLDRYLLRECLPALLFSLLLYSGLAVTSANFPRLQWII--GTPLWGMLGWLALQLPTAIV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +        +    ELL +   G +   L  P+L L +L +         + 
Sbjct: 60  QTLPIALLLAVLLTFGRLAAANELLAVQAGGVALRRLSAPMLALGLLAAGCALAMNQWVL 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFIVDSRDT 181
           P+    +  L  +     +  +  E     L +  L    +    +  L G+ +   R  
Sbjct: 120 PRANVRVGALWWELTSGGSGLFRLERQSIPLGEFSLSFAATDRRTD-DLFGVRLEAWRGR 178

Query: 182 QTHKIYYAQSGSIDLDRQAII-----------LNDG------------EVHRKSPISKDI 218
           Q   +  A+          +            L DG             +H ++P     
Sbjct: 179 QL-SVVLAERARFVEGGLELYGYQNAVLDVGSLRDGAGTPEAQLQALVRLHNRAPSPDAP 237

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             + F    +       S    +        L   + N+P+            FH++L +
Sbjct: 238 LRITFAE-DVDELITRFSGGGFEDTRSVTRTL--RDANDPSLSAAERRAAAVLFHRKLAE 294

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               +    +++  A          +   +   LS++  + W     + ++      +P+
Sbjct: 295 PFANLTLLAVALPLAVL------HARSRSVAFGLSLAVTLAWYLLLTLGQLLAQAGVLPV 348

Query: 339 LYLFLF 344
            +L L+
Sbjct: 349 -WLGLW 353


>gi|163785437|ref|ZP_02180046.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879293|gb|EDP73188.1| hypothetical protein HG1285_10847 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 313

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 108/331 (32%), Gaps = 19/331 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+ +     FL     I  +    Q+L   +++      +    +    +  + 
Sbjct: 1   MKLFYKYLAKKFFYYFLTFLGIISLLIISSQMLNLPSIL--YHLDIFKFFQSILLINISF 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +   F +A+    +   +  N E+  I + G S+   +K ++ L I+  +        
Sbjct: 59  LKLQFLFAYALSFLFLGYYLRENREIYAIYSAGISKNNFLKFIIGLNIIAVVVGLFISLY 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK      +             L+   F  L  D  + +S  +    ++ + I    +
Sbjct: 119 VVPKANRERIKFITVNVKKYFLEALQPKNFTTLPGDYIVYVSDKDKE-KMKNVVIY---N 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A+          +IL +G +    P     + + +K Y              
Sbjct: 175 QKNGFLITAKKAFFK--GTNLILYEGMLQ--VPSKHGFNALIYKRYIFDLNI--EYEKKY 228

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D  L  LL    ++ N          SE   R+    + + F  I  +       + 
Sbjct: 229 SIEDFRLKDLLTIAVSSNNSEKLKAIAVLSE---RIA---YVLPFLFIPTMFFFIGLNIS 282

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           + +    + ++L I         Y+I  IE+
Sbjct: 283 KDRDF-ILSVALGILVIYISINYYLIKLIEK 312


>gi|194436708|ref|ZP_03068808.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
 gi|256024435|ref|ZP_05438300.1| hypothetical protein E4_13754 [Escherichia sp. 4_1_40B]
 gi|194424190|gb|EDX40177.1| putative permease, YjgP/YjgQ family [Escherichia coli 101-1]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 133/369 (36%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                +  R       + + + +    +  +  +++         P+  L L     +  
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMA 348

Query: 352 LMIKKKYTK 360
           L +   Y +
Sbjct: 349 LSLVYWYDR 357


>gi|218691270|ref|YP_002399482.1| hypothetical protein ECED1_3629 [Escherichia coli ED1a]
 gi|218428834|emb|CAR09635.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli ED1a]
          Length = 386

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|307824319|ref|ZP_07654545.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
 gi|307734699|gb|EFO05550.1| permease YjgP/YjgQ family protein [Methylobacter tundripaludum
           SV96]
          Length = 357

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 3/201 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R I +  L++ L ++ +  +     ++  +      L  +        P+V
Sbjct: 1   MNVLTGYIVREILKGSLVATLLLLTLFNLFTFSDQLKDLGKGHYGLTEIFYYLALTSPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  +L +M  N EL+ +   G S + +I+ V+   ++L +   +    
Sbjct: 61  FYELMPASALLGSLFILGAMGNNRELIAMRAAGLSILGIIRAVMLAGLILVVVSILVGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLA-LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P      + +   A         ++  L+ R     +I + K   +  L  I I +  
Sbjct: 121 VAPVAERAAQMIKVNAVDEGRVVMNVKYGLWLREGKK-FINVRKMQDDGNLADISIYELD 179

Query: 180 DTQT-HKIYYAQSGSIDLDRQ 199
           D +      +A+      ++Q
Sbjct: 180 DQRRLRYSIHAEKAVFQGNQQ 200


>gi|15836744|ref|NP_297432.1| hypothetical protein XF0139 [Xylella fastidiosa 9a5c]
 gi|9104925|gb|AAF82952.1|AE003867_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 361

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 93/233 (39%), Gaps = 7/233 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T L  +F+   +
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYT 227
           D +   +  A+ G +       + + L DG+           +  ++ F    
Sbjct: 181 DGRIA-VVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARND 232


>gi|291296584|ref|YP_003507982.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471543|gb|ADD28962.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 377

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 116/367 (31%), Gaps = 51/367 (13%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YILR     FL      V    +  +L R   +   T  L+ +LK     +P  
Sbjct: 1   MTRLDRYILREAWPVFLFGLALYVGFGLISNLLPRAQWM--GTAELSSILKWLALQVPYA 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +        + R  ELL++   G S +   +P L   +LLS F       
Sbjct: 59  TVQAMPIAGLLAVMLAFGRLARENELLVMQAGGISVLRTARPFLLGGLLLSGFSLALSEW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL--FFRLDDDLYI------KISKYNPNNTLQG 172
           + P              L      + E    F  +  +L +              +  Q 
Sbjct: 119 VVPWANRA-------TALVYWNELIPERTPQFNLVGRELTVGEYILRYEGFDPAKDEFQR 171

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS------PISKDISIMK---- 222
           + + +    QT  +  AQ+  +    Q I+L D  V          P    +   +    
Sbjct: 172 VRL-ERWQNQTMTVILAQTARLQ--GQRIVLRDYRVFTLDFAQLPLPEFASLEQAEAGLQ 228

Query: 223 --FKSYTLQTESANSSTIVLKANDQ--------------NLSFLLNPNPNNPNYRPELLE 266
             F++  +    A  +  + ++ +                LS        +P   P  L 
Sbjct: 229 QIFRAQNIGQPGAELTVRLSRSREDLEVQYAGGGFEVPVPLSE-WWRKLQDPRTPPRELR 287

Query: 267 TYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
             ++++H  +   L  ++  ++++  A +RA          + ++L ++   +  FS   
Sbjct: 288 EAKAQWHAAIALALANLMVLVLALPVAVRRATS----PGTALGLALVLTIAYYVAFSAGK 343

Query: 327 HKIEQNP 333
                 P
Sbjct: 344 VLALSGP 350


>gi|255020900|ref|ZP_05292956.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
 gi|254969691|gb|EET27197.1| hypothetical protein ACA_1122 [Acidithiobacillus caldus ATCC 51756]
          Length = 357

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 115/359 (32%), Gaps = 4/359 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  + R +     +    ++ + +V  ++ +       +  +  L+      +P +
Sbjct: 1   MKRADRLLFRGMLGYSTLVLFVLLALMFVANLIAKSGGPGHGSWDMGKLVTYISLQLPDL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     ++ +N ++EL+ +  +G S   L +P+L++ +  ++  F     
Sbjct: 61  AYNLIPLALLLGALIWVSLLNSHSELVALRMSGWSLWRLQRPLLWVGLWGALLTFALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
           + P      + + A       F  L +   +    D  I+I     +   L+G+ IV + 
Sbjct: 121 VVPYTAPAAEAIWANGGQGSGFQALPDGGVWLRQGDQLIQIRAIAADGRRLEGLRIVITT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            +         +        A  L   + H         + +  + + ++ +     +  
Sbjct: 181 PSLDAVTRMLDAREALYRDGAWQLQGVQSHVLGAQRIVSTTLVQQPWDVRLDPGTLRSFS 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                  L  L   +  N       +  +   F KR+T     ++  +I +V        
Sbjct: 241 HPTRTMTLPAL-WESYQNLQGSVLSMNRFALAFWKRVTYPWVGLV--MIWLVVPLVTRNP 297

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           R       I + L +     +                    +F   + +     +++ Y
Sbjct: 298 RGGGLAGRILMGLVLGLAFHFLTEMSGFISISGGIPPVFATVFPLALFASIAWGLQRYY 356


>gi|300993118|ref|ZP_07180204.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
 gi|300305133|gb|EFJ59653.1| hypothetical protein HMPREF9553_04258 [Escherichia coli MS 200-1]
          Length = 359

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|330827963|ref|YP_004390915.1| putative permease [Aeromonas veronii B565]
 gi|328803099|gb|AEB48298.1| Predicted permease [Aeromonas veronii B565]
          Length = 356

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 132/358 (36%), Gaps = 9/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  S L+  + +V +A +I+ ++++  V      +   L      +P   
Sbjct: 3   GILDRYIGRVIFMSILLCEITLVGLAGLIKYVEQLKSVGDGNYDMINALYYVLLSMPKEA 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  ++EL+++   G S+I+++   L  AI L I + +    +
Sbjct: 63  VLFFPLAALLGGLIGLGQLATSSELVVMQAAGRSKISIVMAALKTAIPLMIMVGLMGEYV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRD 180
            P  +     + A A      +     ++ R  ++ ++ I+    +  L GI +   + +
Sbjct: 123 APIAKRMADDIKAGALSEGRLTVSAYGVWARDGNN-FVNINGVRNDGALTGITLYRFTPE 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESANSSTIV 239
            +   +  AQ G    +R   +L   +V R   P            ++ +        + 
Sbjct: 182 RKLIDVVQAQEG--VFERHHWLLKQTQVTRFDDPAQIRSEQHDKMEWSSELTPKQLGVVS 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           +   + ++S LL+      +   +    Y+ E  ++L   L  V   L++   +    R+
Sbjct: 240 IDPENLSVSGLLD-YIGYLDANKQDAGRYKLEMWRKLLSPLSVVAMILLASSFIFGPLRS 298

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           +    + +  I    ++       F  I       P    I    LF   S ++L  K
Sbjct: 299 VSMGARMLMGIMTGFAVYVSDRV-FGPISLVYAVPPILAAIAPSLLFGGISFYILSRK 355


>gi|167835783|ref|ZP_02462666.1| hypothetical protein Bpse38_04778 [Burkholderia thailandensis
           MSMB43]
          Length = 383

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 126/381 (33%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ + K +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGKLSPDSTIS 180

Query: 172 GIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+SG         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSRFNLQNVRIAKSGRYQP-PGHWLLTDVTDTQLTSLAGNGATSPADTLSPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|110833358|ref|YP_692217.1| hypothetical protein ABO_0497 [Alcanivorax borkumensis SK2]
 gi|110646469|emb|CAL15945.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 353

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 114/365 (31%), Gaps = 21/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y  R +    L     IV +  +   +  +  +  + + +   L+      P  
Sbjct: 1   MKLLKRYFWRAVMIPTLAILFIIVGLDCLFGFIYELEFLRGNYQVMEA-LQFILTTTPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L+ +  + EL +I   G S + +   VL   ++L I        
Sbjct: 60  FYEYMPMAILLGTLIGLSLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + A+        +   + R   + +I I+   PN  L G+      D
Sbjct: 120 LTPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPE-FIHINAVQPNGVLHGLTRYRFSD 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGE------VHRKSPISKDISIMKFKSYTLQTESA 233
            Q   +  Y        +  ++    G       V        +           +    
Sbjct: 179 GQKLTETQYVNRAIYQGESWSLEGIQGTRLFADHVETYQKDQGEWQT--------ELTPQ 230

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IV 291
             S +VLK ++  L  LL         +      Y   F ++L   L  +   LI+   V
Sbjct: 231 LLSIVVLKPDNLALVKLLEYT-RYLKRQGLETADYMLSFWQKLFMPLATIGMVLIAISFV 289

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R +    +    I   L   +G  + F  +      +P    IL   L  +  I+L
Sbjct: 290 FGPLREVTMGLRLTAGIVAGLIFHYGQQF-FGQLSLVFHTDPLLAAILPPSLCLVLGIWL 348

Query: 352 LMIKK 356
           L   +
Sbjct: 349 LQRVR 353


>gi|315223961|ref|ZP_07865805.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
 gi|314946065|gb|EFS98070.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea F0287]
          Length = 358

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 128/360 (35%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQKGAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           I P   +       K  + +   S    +L+ +  D+ Y+ +S +N  +       +   
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESV--SDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHF 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +   A++       +   L +    +       I            +  +   +
Sbjct: 179 DGIKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPM 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A ++NL  L              L  Y    ++R        I  LI +      ++
Sbjct: 239 EYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSV 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            ++      + + + + F   +         + +    P++ + L      ++ +L+++K
Sbjct: 296 KKRGGMGINLMVGVVVGFSFVFFDRVFGTLAQSSGGLSPLMAVLLPNLIFLTLAILLLRK 355


>gi|281180020|dbj|BAI56350.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330909040|gb|EGH37554.1| permease Ygh-P2, YjgP/YjgQ family [Escherichia coli AA86]
          Length = 359

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|323188591|gb|EFZ73876.1| hypothetical protein ECRN5871_3010 [Escherichia coli RN587/1]
          Length = 359

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLEQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|269140437|ref|YP_003297138.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
 gi|267986098|gb|ACY85927.1| hypothetical protein ETAE_3096 [Edwardsiella tarda EIB202]
 gi|304560230|gb|ADM42894.1| Putative inner membrane protein [Edwardsiella tarda FL6-60]
          Length = 356

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 121/362 (33%), Gaps = 14/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   IP  +
Sbjct: 3   GVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSIPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +   A+     +    +  L+ + D + ++ I++   + TL G+ I   +  
Sbjct: 123 APQGDQAARNYRAQQMYGGSLLSTQGGLWAK-DGNQFVYIAQVVNDRTLGGVSIYTLNAQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-----YTLQTESANS 235
            +   + YA S + D  +  +         +     D  ++         +         
Sbjct: 182 RKLTSLRYAASATFDGKQWKL------AQVEESNLTDPKMITGSRTLSGVWKTNLTPDKL 235

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             + +  +  ++S L +          +    Y+     ++   L   +  L+++     
Sbjct: 236 GVVAVSPDSLSISGLYH-YVKYLKQSGQESSRYQLNLWSKIFAPLSVAVMMLMALSFIFG 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                         I     F V       +  +   P  I  +      +     L+++
Sbjct: 295 PLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLLR 354

Query: 356 KK 357
           + 
Sbjct: 355 RS 356


>gi|153827727|ref|ZP_01980394.1| conserved permease [Vibrio cholerae MZO-2]
 gi|149737798|gb|EDM52703.1| conserved permease [Vibrio cholerae MZO-2]
          Length = 256

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 99/251 (39%), Gaps = 5/251 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K                + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEQLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIV 239
           +   + +++      + +  ++ D  + R      +IS      Y  +T  A    + + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVT 239

Query: 240 LKANDQNLSFL 250
           +K  + +L+ L
Sbjct: 240 VKPEELSLTGL 250


>gi|218261075|ref|ZP_03476041.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224239|gb|EEC96889.1| hypothetical protein PRABACTJOHN_01705 [Parabacteroides johnsonii
           DSM 18315]
          Length = 361

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 116/346 (33%), Gaps = 10/346 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ I+ V  I ++I+   S    L  I+       IP 
Sbjct: 5   LKRIDWYIIKQFLGTYIFAIALIIAISVVFDINEKIDKFLSPDVPLKAIVFDYYMNFIPY 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  +G S   L+ P    A ++++  F    
Sbjct: 65  FANLFSPLFTFIAVIFFTSKLADNSEVIAMLASGMSFRRLMLPYAISAGIIALSTFALNA 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            I P   +T      K        Y+       ++  +     +Y+  + +   F +   
Sbjct: 125 YIIPPANATRIDFQNKYIKNKKVDYVRSAQ-LEIEPGVIAYFDRYDARSGMGYRFSLEHF 183

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D +      A S   D       L D  +     + + I+       TL    ++    
Sbjct: 184 EDKKMISRLTANSIKYDSLYN-WTLIDYMIRDFDGMREHITEGSRLDTTLTIVPSDFLIS 242

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
           V          L              ++T++ E+HKR    +   I   I          
Sbjct: 243 VNDCETMTSPELSTYIDRQKKRGIGNIQTFQIEYHKRFAAIMAAFILTSIG-----ASLS 297

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFL 343
            R+ K    + I + ++    +  F+ +      N    P +  ++
Sbjct: 298 SRKIKGGMGLNIGIGLALSFSYILFTTVTSTFAINGNLSPAMAAWI 343


>gi|191172563|ref|ZP_03034103.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|190907231|gb|EDV66830.1| putative permease, YjgP/YjgQ family [Escherichia coli F11]
 gi|324011926|gb|EGB81145.1| hypothetical protein HMPREF9533_04084 [Escherichia coli MS 60-1]
          Length = 359

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|167621692|ref|YP_001672200.1| hypothetical protein Caul_5426 [Caulobacter sp. K31]
 gi|167351815|gb|ABZ74541.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 230

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 4/175 (2%)

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
           ++  L+P  L +  P  F +    V+T+++ ++E+  +   G S   ++ P + + +LL 
Sbjct: 1   MAANLLPHYLGLALPVAFFIALFIVITTLSDSSEIDALLAGGRSLTRIVAPFVVIGVLLG 60

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           +F  I    ++P  R   + +   A  A     L    F    + L            L 
Sbjct: 61  LFSVIVFGYLQPYSRYAFRSVMHAAITAGWNGRLPGRAFVEDGEQLITADESVAAGQALM 120

Query: 172 GIFIVDSRDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMK 222
           GIFI      +  ++  A S S+    D ++ A++L DG    +    +D+++  
Sbjct: 121 GIFIKRPDANKREEVIAASSASLVAEPDGEKVALMLTDGRRTAQDGQGEDLALAT 175


>gi|51245020|ref|YP_064904.1| hypothetical protein DP1168 [Desulfotalea psychrophila LSv54]
 gi|50876057|emb|CAG35897.1| unknown protein [Desulfotalea psychrophila LSv54]
          Length = 362

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 8/263 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L    + FL      + +  +I   ++ +  + + + L++++K   + IP +
Sbjct: 1   MHLLNRYLLGQFFKFFLTVAAGFIALYLLIDFFEKFDNFTEAGKPLSVVIKYFLFSIPAI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +N + EL  +   G     +I+P++     +++    S   
Sbjct: 61  VDQLGPILILLSGVISLGVLNSSNELTALKAGGLPLRAIIRPIIIGGGAVTLLFMASAQW 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           I P   +          Q       +  N  ++   +  Y    K N        F   S
Sbjct: 121 ILPSTVAVTNDIWIEGVQGKTPVGIVRNNRYYYHGQEGFYSFAWKNNKEYLFAN-FSYSS 179

Query: 179 RDTQTHK--IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D +     +  A S S D  + + +L  G + ++       +   F S          +
Sbjct: 180 WDKEYGLKEMISATSASWDAKQNSWLLKGGVLQQQE-SRGSYTTTTFTSRKFHFPETPEA 238

Query: 237 --TIVLKANDQNLSFLLNPNPNN 257
             T     ++++LS LL    NN
Sbjct: 239 FRTPQHAESERSLSALLKGALNN 261


>gi|332753041|gb|EGJ83425.1| hypothetical protein SF434370_3220 [Shigella flexneri 4343-70]
 gi|332998924|gb|EGK18515.1| hypothetical protein SFVA6_3889 [Shigella flexneri VA-6]
 gi|333000167|gb|EGK19750.1| hypothetical protein SFK218_4002 [Shigella flexneri K-218]
          Length = 359

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|188995335|ref|YP_001929587.1| hypothetical protein PGN_1471 [Porphyromonas gingivalis ATCC 33277]
 gi|188595015|dbj|BAG33990.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 363

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 123/360 (34%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + Y+++    +F+ S + I+ ++ V  I ++I+       SL +I+       +P 
Sbjct: 7   LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ + + G S   L+ P +  A +++I  F+  +
Sbjct: 67  YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 126

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            + P   +T      K        Y  E++   +   ++     Y+        F + + 
Sbjct: 127 FVIPPGNATRIDFQNKYIKNKKVQY-AESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEF 185

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  Q      A     D       + +  +       + +         +    A+    
Sbjct: 186 KGKQLVSRLTADRIQYDSLYN-WRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADFLVA 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    + L     +        ++ +  E HKR        I  +I   A+     
Sbjct: 245 EDDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIG--ASLSSRK 302

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           V+    I+ I I L +SF  +  F  +      +    P +  +L  F  + I + + KK
Sbjct: 303 VKGGMGIN-IAIGLGLSFA-YILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVFLYKK 360


>gi|145629199|ref|ZP_01784998.1| predicted permease [Haemophilus influenzae 22.1-21]
 gi|144978702|gb|EDJ88425.1| predicted permease [Haemophilus influenzae 22.1-21]
          Length = 270

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 85/260 (32%), Gaps = 17/260 (6%)

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           ++K  L +++L +     +   + P        +   A+   T   L    F   +++  
Sbjct: 1   MVKVALIMSLLTAGIAAYNALWLSPWAIQKQVNMVEDAKANPTVGVLSSGQFISTNNNNV 60

Query: 159 IKISKYNPNNTLQGIFIVDS--RDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSP 213
           +       +N ++ +++     +      +  A+ G +       Q + L + +    + 
Sbjct: 61  VLFIDKIKDNQIRNVYLFQMTPQKQTKPSVITAEKGELIALPNGDQVLNLKNTKRVEGTS 120

Query: 214 ISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
              D  I  F  Y       ++     +  +  LS L++ + ++           ++E H
Sbjct: 121 ALPDFRITHFDEYHAYLGYQSAENTNDEVAELTLSQLIDLDSSSA----------KAELH 170

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
            R+T  L   +  LI++     R   RQ +    +   L          S+         
Sbjct: 171 WRITLILAVPLMALIAVP--LSRVNPRQGRFAKILPALLLYLIYFLLQSSFKSAGSAGKL 228

Query: 334 YYIPILYLFLFCISSIFLLM 353
               ++ L       + +++
Sbjct: 229 EAELLMPLVNIGFFLLAVVL 248


>gi|331648770|ref|ZP_08349858.1| putative permease [Escherichia coli M605]
 gi|331042517|gb|EGI14659.1| putative permease [Escherichia coli M605]
          Length = 386

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 GASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSTFTSMNLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 318 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 375

Query: 347 SSIFLL 352
            S+   
Sbjct: 376 LSLVYW 381


>gi|270340118|ref|ZP_06007105.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332630|gb|EFA43416.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 395

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 132/366 (36%), Gaps = 14/366 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S L I+ I+ V  + + +   S     L  I+       +P 
Sbjct: 35  IKRIDWYIIKKFIGTYIFSILLIISISIVFDVNENLAKFSQYHAPLEAIVFDYYANFVPY 94

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ +  TG S   L++P +   +LL+   +    
Sbjct: 95  FANLFSALFVFISVIFFTSKLAGNSEIIAMLATGMSFKRLLRPYMITCVLLAGLSYYLSA 154

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---GIFIV 176
            + P   + I+Q           +   EN+  ++   +   I  Y  +NT++   G  + 
Sbjct: 155 YVIPHG-TVIRQNFETMYKNKHKNTSAENVQLQVGRGVIAYIQHY--DNTMKKGYGFCLD 211

Query: 177 DSRDTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
              + +      A     D     +    L + ++ R   + + I+    K   +  E  
Sbjct: 212 KFENKKLVSHLTAMEVQYDTISDSKYHWKLTNWKIRRLKGLREHITSGAEKDSVIMMEPT 271

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +        L +      +     +  Y+ E+HKR+       I  +I    A
Sbjct: 272 DLVYSKGQQETFTSPELKDYISKQIDRGSGNVVQYQVEYHKRIASSFASFILTIIG---A 328

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              +  R+      + I L++SF  +     +      N Y+ P+L  ++  I    +  
Sbjct: 329 SLSSRKRKGGMGMYLGIGLALSF-TYIMMQTVSATFAINAYFPPMLAAWIPNIVFAVIAF 387

Query: 354 IKKKYT 359
           +  ++ 
Sbjct: 388 VCYRHA 393


>gi|316933707|ref|YP_004108689.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
 gi|315601421|gb|ADU43956.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris DX-1]
          Length = 361

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 108/358 (30%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 4   NTLGRYFARRFVVASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + I      N +
Sbjct: 64  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIVATTIFNPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQGIFIV 176
               +   KQ+ A+     T    + N F       D    I  ++       L GI I 
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVNPDGQAIINAARSQQQGAVLTGITIF 183

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               + Q      A+   ++      +L     +       D   M+          A  
Sbjct: 184 RFDPNFQFRDRIEAREAVLEPGH--WLLKSVRRYTLDSAPTDQDTME---LPTSLTLAQV 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     +   L     ++ N        YR ++HK L +    ++  ++ + A+  
Sbjct: 239 RNSFATPESVSFWQLPAYIKSSENSGFATAG-YRLQYHKLLAKPF--LLAAMVMLAASVS 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               R       +   ++  F ++          +    +         C+  +   +
Sbjct: 296 LRFFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|53725612|ref|YP_102445.1| hypothetical protein BMA0670 [Burkholderia mallei ATCC 23344]
 gi|67640814|ref|ZP_00439608.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|76811145|ref|YP_332584.1| hypothetical protein BURPS1710b_1173 [Burkholderia pseudomallei
           1710b]
 gi|121600496|ref|YP_993650.1| hypothetical protein BMASAVP1_A2341 [Burkholderia mallei SAVP1]
 gi|124384824|ref|YP_001028888.1| hypothetical protein BMA10229_A2944 [Burkholderia mallei NCTC
           10229]
 gi|126449595|ref|YP_001081199.1| hypothetical protein BMA10247_1655 [Burkholderia mallei NCTC 10247]
 gi|126453481|ref|YP_001065300.1| hypothetical protein BURPS1106A_1020 [Burkholderia pseudomallei
           1106a]
 gi|134281127|ref|ZP_01767836.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167003638|ref|ZP_02269424.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167718521|ref|ZP_02401757.1| hypothetical protein BpseD_05832 [Burkholderia pseudomallei DM98]
 gi|167737553|ref|ZP_02410327.1| hypothetical protein Bpse14_05780 [Burkholderia pseudomallei 14]
 gi|167823141|ref|ZP_02454612.1| hypothetical protein Bpseu9_05658 [Burkholderia pseudomallei 9]
 gi|167844705|ref|ZP_02470213.1| hypothetical protein BpseB_05393 [Burkholderia pseudomallei B7210]
 gi|167893240|ref|ZP_02480642.1| hypothetical protein Bpse7_05710 [Burkholderia pseudomallei 7894]
 gi|167901697|ref|ZP_02488902.1| hypothetical protein BpseN_05420 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917973|ref|ZP_02505064.1| hypothetical protein BpseBC_05418 [Burkholderia pseudomallei
           BCC215]
 gi|217419559|ref|ZP_03451065.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226194459|ref|ZP_03790057.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237811280|ref|YP_002895731.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|242314384|ref|ZP_04813400.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177658|ref|ZP_04884313.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254181441|ref|ZP_04888038.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254190840|ref|ZP_04897347.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196385|ref|ZP_04902809.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254199347|ref|ZP_04905713.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254205663|ref|ZP_04912015.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254259902|ref|ZP_04950956.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254357821|ref|ZP_04974094.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52429035|gb|AAU49628.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
 gi|76580598|gb|ABA50073.1| membrane protein, putative [Burkholderia pseudomallei 1710b]
 gi|121229306|gb|ABM51824.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124292844|gb|ABN02113.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126227123|gb|ABN90663.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126242465|gb|ABO05558.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134247433|gb|EBA47518.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147748943|gb|EDK56017.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147753106|gb|EDK60171.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148026948|gb|EDK84969.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|157938515|gb|EDO94185.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698697|gb|EDP88667.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169653128|gb|EDS85821.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184211979|gb|EDU09022.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217396863|gb|EEC36879.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225933544|gb|EEH29533.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237504053|gb|ACQ96371.1| permease YjgP/YjgQ family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238521609|gb|EEP85059.1| permease YjgP/YjgQ family protein [Burkholderia mallei GB8 horse 4]
 gi|242137623|gb|EES24025.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243060864|gb|EES43050.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254218591|gb|EET07975.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 383

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 124/381 (32%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+ G         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKRGHYQP-PGHWLLTDVTDTQLTSLAGNGTASPVDTLNPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|213583965|ref|ZP_03365791.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 342

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 122/346 (35%), Gaps = 12/346 (3%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIPTVLPMVTPFCFAMETTN 75
             + +  +  +  I++ ++ +  + +     L     +   +P  + +  P    +    
Sbjct: 1   IMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAALLGALL 60

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
            L  + + +EL+++  +G +R+ +   V+  AI L +        + P+     +   A+
Sbjct: 61  GLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQ 120

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSRDTQTHKIYYAQSG 192
           A    +    ++ L+ +  ++ ++ I +   +  L GI I    D R  +   + YA S 
Sbjct: 121 AMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAFNDQR--RLQSVRYAASA 177

Query: 193 SIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL 251
             D + +   L+   E   ++P     S     ++           + L  +  ++S L 
Sbjct: 178 KFDPEHKVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLH 237

Query: 252 NPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFIS 311
           N          +    Y+     ++ Q L   +  L+++                   IS
Sbjct: 238 N-YVKYLKSSGQDAGRYQFNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGIS 296

Query: 312 LSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               F V    F  +       P    +L    F + S++L++ K 
Sbjct: 297 FGFVFYVLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRKS 342


>gi|256820810|ref|YP_003142089.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582393|gb|ACU93528.1| permease YjgP/YjgQ family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 358

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 128/360 (35%), Gaps = 9/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F M  +  + I  ++ + ++++ +      +N +L      I   
Sbjct: 1   MKILDWYILKRYLLTFFMMIILFIPIGIIVDLSEKVDKMIQKGAPMNEILWYYLSFIVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S +  ++P +  A ++S+ +F     
Sbjct: 61  ANILFPILLFLSIIWFTSKLANNTEIIAIQSSGVSYMRFLRPYIVGASIISVIVFFMGMF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           I P   +       K  + +   S    +L+ +  D+ Y+ +S +N  +       +   
Sbjct: 121 IVPAASTVYNDFWNKYIRSSKVESV--SDLYNQFSDNDYLYVSSFNYQDKRGYNFSVEHF 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +   A++       +   L +    +       I            +  +   +
Sbjct: 179 NGIKMTEKINAETIQWIDSTKTYRLTNYSKRKIGEGDDVIVKRDQLDTIFNFKPDDLMPM 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              A ++NL  L              L  Y    ++R        I  LI +      ++
Sbjct: 239 EYTAENKNLFELNKFIEREKMKGSPNLNMYLLVKYRRWGAISTAFILTLIGVAV---SSV 295

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLMIKK 356
            ++      + + + + F   +         + +    P++ + L      ++ +L+++K
Sbjct: 296 KKRGGMGINLMVGVVVGFSFVFFDRVFGTLAQTSGGLSPLMAVLLPNLIFLTLAILLLRK 355


>gi|39936125|ref|NP_948401.1| permease YjgP/YjgQ [Rhodopseudomonas palustris CGA009]
 gi|39649979|emb|CAE28503.1| predicted permease [Rhodopseudomonas palustris CGA009]
          Length = 361

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 110/358 (30%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 4   NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + IF     N +
Sbjct: 64  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQGIFIV 176
               +   KQ+ A+     T    + N F       D    I  ++       L GI + 
Sbjct: 124 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 183

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               D Q      A+   ++      +L +   +       D   ++          A  
Sbjct: 184 RFEPDFQFKDRIEAREAVLEPGH--WLLKNVRRYTMDGAPVDQDTLE---LPTSLTLAQV 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     +   L     ++ N        YR ++HK L +    ++  ++ + A+  
Sbjct: 239 RNSFATPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPF--LLAAMVMLAASVS 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               R       +   ++  F ++          +    +         C+  +   +
Sbjct: 296 LRFFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|288928388|ref|ZP_06422235.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331222|gb|EFC69806.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 390

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+R    +++ S L I+ IA V  + + +   +     L  I+       +P 
Sbjct: 30  LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 89

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +   G S   L++P +   +L+S   F    
Sbjct: 90  FANLFSPLFVFIAVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISCLSFYLSG 149

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   + +   ++   +   ++     ++D  +   I  Y+        F +
Sbjct: 150 YVIPHGTVIRQNFESMYKNSKKNTSAENVQ----LQVDRGVIAYIQHYDDKTKRGYGFSL 205

Query: 177 DSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           D  + +    +   S     +I   +    +++  +     + + I+    +   +  E 
Sbjct: 206 DKFENKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDKRDTLIMMEP 265

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A+      +        L +            +  Y  E+HKR+       I   I +  
Sbjct: 266 ADLVFSKGQQETFTNPELSSYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSL 325

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSI 349
           + ++   R+      + I L++SFG        +         P     +   LF + + 
Sbjct: 326 SSRK---RKGGMGLYLGIGLALSFGYILLQTVSATFAVNANTPPMLAAWIPNLLFAVVAY 382

Query: 350 F 350
           F
Sbjct: 383 F 383


>gi|325860534|ref|ZP_08173638.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|327313657|ref|YP_004329094.1| permease [Prevotella denticola F0289]
 gi|325481919|gb|EGC84948.1| permease, YjgP/YjgQ family [Prevotella denticola CRIS 18C-A]
 gi|326944618|gb|AEA20503.1| permease, YjgP/YjgQ family [Prevotella denticola F0289]
          Length = 405

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 124/360 (34%), Gaps = 18/360 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
              + YI+R    +++ + L I+ IA V    + ++  +        I+       IP  
Sbjct: 46  GILDWYIIRKFIGTYIYAILLIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 105

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L++   F   + 
Sbjct: 106 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSIRRLMRPYMISCVLIAGLTFYLNSF 165

Query: 121 IEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIV 176
           + P     R   + L   ++   +   ++      +  +    I  Y+       G  +V
Sbjct: 166 VIPHGTVIRQNFESLYRNSKKNTSAENVQ----LYVAKNTTAYIQHYDNQYKRGYGFSLV 221

Query: 177 DSRDTQTHKIYYAQS---GSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +D +      A      ++   +    L++ ++     + + I     K   L  E  
Sbjct: 222 KIKDKKIVSHMTAMEIQYDTVADTKFHWRLSNWKMRTLKGLKEHIQSGASKDTVLLMEPT 281

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +        LL+      +     +  Y  EFHKR+       I  +I +  +
Sbjct: 282 DLVYSKGQQETFTSPELLDYISKQTSRGSGNVVQYEVEFHKRIAMSFSSFILTIIGLSLS 341

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            ++   R+      + I L++SF         S    + +  P     +   +F + + F
Sbjct: 342 SRK---RKGGMGLYLGIGLALSFSYIMLQTVSSTFAIQADTPPLLAAWIPNIIFAVIAYF 398


>gi|325282729|ref|YP_004255270.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314538|gb|ADY25653.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 347

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 99/362 (27%), Gaps = 21/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  + + ++M  L  V +     +            +    L    Y +PT+
Sbjct: 1   MSRLTRYILLDVLKWYVMGFLLFVVLQMTDVLSLTAGAFLDYNATPQQALSTLLYNLPTL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L                  M  ++E+  +   G   ++L+ P+    +L+    F +   
Sbjct: 61  LNRSLVLAVPFAVLLSFGRMQGDSEIKAMYAAGVRPLSLVWPLALPFLLVGALTFWNSGW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-----LQGIFI 175
           + P   +                   E ++   + +      +           L G+ +
Sbjct: 121 VAPWANARWYDAWYDIYGMTPEPPTRE-MYAYSEGETLFYAGRVASGEEPQQALLSGVMV 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTLQTESAN 234
                 +  ++  A SG+ +   Q   L    V R           + F       +   
Sbjct: 180 Q-----RGGEVITADSGTWNTATQTWTLTGAWVTRPGETPQPSAEPLTF------VQKDT 228

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +    +A+  + + L      +P  +     T   +   R       VIF L +     
Sbjct: 229 LAPPRPEADQLSRAEL-RAELADPTLQGAERRTLEHQLAGRTADSFTAVIFAL-AAGLLG 286

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
                R       + + +        G           P  +  L   +F + +  L   
Sbjct: 287 LLMPGRAWAFAAVLLVVVVYYVPWTLGPQLAAGGALT-PALVAWLPNLIFIVLAAALAWR 345

Query: 355 KK 356
            +
Sbjct: 346 LR 347


>gi|289209273|ref|YP_003461339.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
 gi|288944904|gb|ADC72603.1| permease YjgP/YjgQ family protein [Thioalkalivibrio sp. K90mix]
          Length = 357

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 115/360 (31%), Gaps = 7/360 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y++R +     ++ + +V +  V  ++  +    +    +   +      +P  +
Sbjct: 3   TVLGRYVIRQVLIGTTLAVVLLVALDAVFAMIDELRDTGAGNYGVTEAMLYVALTLPRRM 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     L ++  N+EL  +   G +    I  VL   +++ + + I     
Sbjct: 63  YEMLPPAALVGGLLWLGNLAANSELTAMRAAGMTLGRFIVWVLQAGLVVVMVMLIIGEFF 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P   +  + L A A            L+ R D    I        N L G+ I++    
Sbjct: 123 APASETRAQALKASAFDEEISVGSM-GLWAR-DGQRMIHAESVLAGNQLVGVRIIEFTGD 180

Query: 182 QTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           +    I  A             L D E    S   + ++  + +    +  +     +++
Sbjct: 181 REPSWITRAARARFVDGD--WRLEDVERSLLSHD-RVVAEHRAEETIDRLIAPEYFDVLV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               Q  +  L+   +           Y   F +R T      +  L++I          
Sbjct: 238 VEPSQMAALDLSRYIDYLRENQLDAAPYEVAFWQRFTLPASTFVMLLLAIPFLFGSQREG 297

Query: 301 QRKKIHPIFISLSISFGVFW-GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYT 359
              +   I I++ +SF +     +++       P     L + LF   ++F L      T
Sbjct: 298 GAGQRLFIGIAIGVSFVIVMRAITHLGLVYNLPPLLAACLPVLLFLAIALFALRRMAVRT 357


>gi|192291843|ref|YP_001992448.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192285592|gb|ACF01973.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 362

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 110/358 (30%), Gaps = 14/358 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y  R    + L     +  +   +  +  +        S   + + S   +P +L
Sbjct: 5   NTLGRYFARRFVIASLGVFFGLFVLLVFVDYVDLLRRAGGLAVSAFYVAQASFCRVPQLL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R+ EL++    G S    I P L+ AI + IF     N +
Sbjct: 65  ERLLPFCILIGGMTCYLALSRSLELVVARAAGLSAWEFISPALWSAIAIGIFATTVFNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQGIFIV 176
               +   KQ+ A+     T    + N F       D    I  ++       L GI + 
Sbjct: 125 SAHMQERAKQMEAEMFGENTGGLQDANGFWMNQVSPDGQAIINAARSQQQGAVLTGITVF 184

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               D Q      A+   ++      +L +   +       D   ++          A  
Sbjct: 185 RFEPDFQFKDRIEAREAVLEPGH--WLLKNVRRYTMDGAPVDQDTLE---LPTSLTLAQV 239

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                     +   L     ++ N        YR ++HK L +    ++  ++ + A+  
Sbjct: 240 RNSFATPESVSFWQLPTYIKSSENSGFATAG-YRLQYHKLLAKPF--LLAAMVMLAASVS 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               R       +   ++  F ++          +    +         C+  +   +
Sbjct: 297 LRFFRFGGVQKMVLSGVAAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 354


>gi|83720791|ref|YP_441377.1| hypothetical protein BTH_I0821 [Burkholderia thailandensis E264]
 gi|167618241|ref|ZP_02386872.1| hypothetical protein BthaB_18181 [Burkholderia thailandensis Bt4]
 gi|257139950|ref|ZP_05588212.1| hypothetical protein BthaA_12230 [Burkholderia thailandensis E264]
 gi|83654616|gb|ABC38679.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 383

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 125/381 (32%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+SG         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKSGRYQP-PGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|258593792|emb|CBE70133.1| putative Inner membrane protein yjgQ [NC10 bacterium 'Dutch
           sediment']
          Length = 362

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 120/357 (33%), Gaps = 7/357 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            + + +I   + R + +    ++ +  ++ ++  ++ V   T +L          IP+ +
Sbjct: 9   STIDRHIWFRVIRGYALVMAVLLSVFSLMALVNELDSVGRGTYTLGDAFLNVILTIPSRM 68

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +   L  +  + EL+ +   GTS + +   V    ILL I +   +  I
Sbjct: 69  IELAPTTAVLGSIIGLGELASSHELIAMQTLGTSPLRIGASVTVTGILLMIAVIGVQEWI 128

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P           +A       +  +  F+  D   +I++ +  P   L  + I +  D 
Sbjct: 129 APSADQLAYMRRIQAISKPEALHTRQG-FWSRDGRQFIRVYQVLPGRILSNVEIYEFDDN 187

Query: 182 QT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTIV 239
                + +A            +L D  V R        S  +   S+        +  +V
Sbjct: 188 HRLRLVTWAARAE-PEGSHRWVLID-VVQRMVDGGGVASKQLASLSWAGSLTPTQAELLV 245

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L A   + S L +          + +        +++T  L  ++  L++I         
Sbjct: 246 LPAEILSRSTL-SQYIAFLKKTGQDVARLEIRLWQQMTMPLSTLMMVLVAIPFVLGPLRK 304

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               K       +  +F +   F   +  I      + +L   L  +  + + + ++
Sbjct: 305 ATAGKRILHGSLIGAAFHLGSHFIAHLGAILHLNAALTVL-SPLAVLGGVTVWVYRR 360


>gi|257454351|ref|ZP_05619614.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
 gi|257448254|gb|EEV23234.1| permease YjgP/YjgQ family protein [Enhydrobacter aerosaccus SK60]
          Length = 357

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 118/358 (32%), Gaps = 16/358 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ +    +   + + +  +  V   L  +  + +   +    L+   Y  P  L 
Sbjct: 2   ILSRYVKKQALFAMTGAIIGLWLLKVVFDYLAELQDL-NDHYNYLDALRFIAYSAPRDLL 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF   +     L  +   +EL +I   G SR  ++  V+  AI+  I   +    + 
Sbjct: 61  DYMPFGTLLGAVVGLGLLANTSELTVIQAAGISRFKIVGWVMQPAIIFVIIRLLLGQYVV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD-T 181
           P       QL+ + +          N ++    +  I I   N    L+ I +    D  
Sbjct: 121 PTSN----QLAHQVKHDKPLLSSAINGYWDKQANRIINIDHANTKGELKNIKVWQLDDNA 176

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKFKSYTLQTESANS 235
              ++  A +GS      A   +  ++ +       +     ++ +   +  L  E +  
Sbjct: 177 HIQQVLQADTGSFVSQNTADKTSGWQLQQIKQLTIAADGHSQLTTIPTMTLQLPIEPSAI 236

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAA 293
             +    ++ +++ L          +   LE   + F K+L      +   L++   V  
Sbjct: 237 YLLTRSPDNMSVTELWQHQQLLAKDKRRSLEHEVA-FWKKLLAPFAMLSLVLVACSFVFG 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R      + +  +   L  S+         +     +P+++ +L +       ++L
Sbjct: 296 SLRNQSLGYRIVIALLFGLVFSYLQDLVGFVSLST-GFSPFFMVLLPIIASAALGVYL 352


>gi|167580135|ref|ZP_02373009.1| hypothetical protein BthaT_18420 [Burkholderia thailandensis TXDOH]
          Length = 383

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 126/381 (33%), Gaps = 28/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFVLFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQAPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ ++ + + + I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLVKIGVPIVIATYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYSDQLSERVRLEALGSSVSTNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +         +  A+SG         +L D    + + ++ +             
Sbjct: 181 DVRIYEFDSKFNLQNVRIAKSGRYQP-PGHWLLTDVTDTQLTNLAGNGATAPNDTLNPVY 239

Query: 218 -ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
               +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++
Sbjct: 240 RAQQVTLPQYSLRSDLTPQILSVLLVSPERMSLFNLFRYIQHLKENQQDTQRYDIALWRK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L      ++  ++S+  A                I L +SF +F      I  +  N + 
Sbjct: 300 LLYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWP 357

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+      CI     L   K
Sbjct: 358 APLTAALPGCIYLALGLFALK 378


>gi|256829582|ref|YP_003158310.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578758|gb|ACU89894.1| permease YjgP/YjgQ family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 360

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 122/365 (33%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YILR      L+ C   + I   I +  R++    +   L+ +     Y  P +
Sbjct: 1   MNLLTRYILRQNLFLLLLVCGIGLGIYVFIDLFDRLDNFLEAGVGLSSVGAYFLYRTPFI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F +     +  M R+ ELL ++    S   + K V++ A+ L +        
Sbjct: 61  LAQIFPAVFLIALMVQMGLMLRSRELLALEACSVSPGAVAKSVIWYALALCVAQLFFSEA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP----NNTLQGIFIV 176
           +        +++  +          + +  +  + +  + +    P       L    + 
Sbjct: 121 LGVSGHRAAERIWNEEVRDRQIEKRQLSDLWFREGNRIVHMGSVTPAAGRGLELTVHVLE 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D       +I  AQ        +  +L+   V R  P + ++         L+T+ ++  
Sbjct: 181 DDDAGSIREIIRAQE--FTSAPEGWLLS--GVTRTLPATFEVQKAAQMELDLRTDVSSFL 236

Query: 237 TIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +  K   ++L  L L             +E  ++ +H +L      ++  LI++     
Sbjct: 237 IVDPKTRLESLPLLQLGAEIKRLRDSGSNIERLQTAWHMKLAYAGSVLVMALIALAVVSF 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF---LFCISSIFLL 352
                    +  I     ++   ++G   +     +     P+L  +    F  +     
Sbjct: 297 F------GSLFVIIPLGLVATFCYYGLFVLCASAGEKGLVPPVLAAWAANAFFTAVAGGW 350

Query: 353 MIKKK 357
           +++ +
Sbjct: 351 LLRGR 355


>gi|300727713|ref|ZP_07061099.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
 gi|299775001|gb|EFI71607.1| permease, YjgP/YjgQ family [Prevotella bryantii B14]
          Length = 409

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 128/367 (34%), Gaps = 16/367 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    ++  S + I+ I+ V+ I + +   +     L  I+       IP 
Sbjct: 49  IKRLDWYIIKKFIGTYFFSIILIISISIVVDINENLAKFTEYHAPLKAIVFDYYANFIPY 108

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +     +      + +  N+E++ I   G S   L++P +   +L+S+  +    
Sbjct: 109 FANLFSALFVFIAVIFFTSKLAGNSEVIAILAAGVSFKRLMRPYMISCVLISMLNYYLSA 168

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P     ++Q               +N+  ++D  + + I  Y+    L+  F     
Sbjct: 169 YVIPHGNV-VRQNFESLYKNKKKITSADNVMLQIDKGVIVYIQHYDD--RLKKGFGFSLD 225

Query: 180 DTQTHKIYYAQSG------SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             +  K+    +       +I   +    +++ +      + + I+    K  TL  E  
Sbjct: 226 KFENKKLVDHMTAMEIQYDTISDSKYHWRMSNWKERHLRGLREHITNGNQKDTTLYMEPT 285

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           +      +        L        N     +  Y  E+HKR+       I  +I +  +
Sbjct: 286 DLVYSKGQQETFTSPQLKEYISKQKNRGSGNVVQYEVEYHKRIASSFASFILTIIGLSLS 345

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            ++   R+      + + L++SF         S    + +  P     +   +F I ++F
Sbjct: 346 SRK---RKGGMGMYLGVGLALSFAYIMLQTVSSTFAIQADAPPMLAAWIPNMIFAIIALF 402

Query: 351 LLMIKKK 357
                 +
Sbjct: 403 CYKRAPR 409


>gi|255009350|ref|ZP_05281476.1| hypothetical protein Bfra3_09423 [Bacteroides fragilis 3_1_12]
 gi|313147107|ref|ZP_07809300.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135874|gb|EFR53234.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 365

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 132/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP 
Sbjct: 7   IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  +
Sbjct: 67  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P+    R   +    K +       ++      +D  +   I  Y   N     F +
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNIQ----LEIDTGVIAYIDNYQDYNKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+S + D        + D  +     + +  +I++            
Sbjct: 183 DKFVDKKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKE--TIIRGDKLDSIIPMEP 240

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  ++++   + L+   L              ++ +  E+HKR+       I  +I +  
Sbjct: 241 ADFMIMRNQQEMLTSPQLSAYIDKQRQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  +      N    P++ ++    + ++  
Sbjct: 301 ----SSRKTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPVIAMWIPNLLYALIA 356

Query: 352 LMIKKKYTK 360
             + +K  K
Sbjct: 357 FYLYRKAPK 365


>gi|330818020|ref|YP_004361725.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
 gi|327370413|gb|AEA61769.1| hypothetical protein bgla_1g31620 [Burkholderia gladioli BSR3]
          Length = 382

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 134/383 (34%), Gaps = 26/383 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V   + +    +   G   P+ 
Sbjct: 1   MRLYEKYFARQIYLTFVFVLFAFSGLFFFFDLISELNSVGHGSYNFGYAVLRVGLQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DD-----LYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +      D+      ++ +   +P++T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS----------- 219
            + I +     Q   +  A+SG         +L D    + SPI    +           
Sbjct: 181 NVRIYEFDSKFQLQNVRIAKSGRYAP-PGHWLLTDVTDTQLSPIVPAPNTPKDALNPVYR 239

Query: 220 --IMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y+L+++ +    +++L + ++   F L     +     +  + Y     ++L
Sbjct: 240 SEQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-Y 335
                  +  ++S+  A                I L +SF +F      I  +   P   
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPL 359

Query: 336 IPILYLFLFCISSIFLLMIKKKY 358
              L   ++    +F L    ++
Sbjct: 360 TAALPGLIYLALGLFGLKWVDRH 382


>gi|152993423|ref|YP_001359144.1| hypothetical protein SUN_1840 [Sulfurovum sp. NBC37-1]
 gi|151425284|dbj|BAF72787.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 341

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 136/363 (37%), Gaps = 27/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + YI     ++FL   +    I  ++ +++  +L +    +   LL +  Y +P +
Sbjct: 1   MVNVKGYISSNFTKAFLTIFIPFFLIISLVYLVKISSLTAQIQINFLELLLLYSYSLPNI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F    TN L  ++++ EL+ +   G     +++ +L L IL S+ L     +
Sbjct: 61  IFYTIPLSFIAAVTNTLMKLSQDNELIALYALGLKAKKVLRSILLLGILFSVLLSTLSFL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
             P  +        K +   T + +      +   D YI + + +  + L   + I +  
Sbjct: 121 GIPISKQLYNAFKEKKKTEATLNII-PGKLGQKFGDYYIYVKEKDEKSKLFHDMVIYNRT 179

Query: 180 DTQTHKIYYAQSGSIDLDR--QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                + + ++ G ++ D+   +++L +G  +  +     +   K+KS  L+   +    
Sbjct: 180 KKDAEQFFSSKQGQLNRDKLVASLLLKEGYGYTYTKNK--LQQAKYKS--LEVFDSKQKY 235

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                +  +   L+  + +                  R+ + LF +   LI I++    A
Sbjct: 236 RFHFQDIVSYWALIKTDKH------------------RMGRALFYLFVSLIPILSVYLVA 277

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                   +    S  I F +      I   +E+    IP L L    I     ++ +K+
Sbjct: 278 AFAMINPRYQANYSFIIIFSITLSLYLIASSLEKWGD-IPALILTAIVIFIFGRVIFEKR 336

Query: 358 YTK 360
             +
Sbjct: 337 VAR 339


>gi|301017326|ref|ZP_07182090.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300400299|gb|EFJ83837.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 359

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 131/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVMMA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|330751983|emb|CBL80496.1| predicted permease YjgP/YjgQ [uncultured Polaribacter sp.]
          Length = 363

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 134/370 (36%), Gaps = 20/370 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILL-KISGYLIP 58
           MK  + YIL+    +FL + L ++ IA  I + ++I+         LN +L       I 
Sbjct: 1   MKIIDWYILKRFLVTFLFTLLILIPIAIAIDVSEKIDNFLEHPNLGLNEVLNDYYLNFII 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
                  P    +      + ++ NTE++ I N   S    + P    A L++I      
Sbjct: 61  YYTNTFMPLALFIAVILFTSKLSNNTEIIAITNAKVSFTRFMYPYFIGATLITILSLGMN 120

Query: 119 NIIEPKCRSTIKQLSAK-AQLALTFSYLEE-NLFF-RLDDDLYIKISKYNPNNTLQGIFI 175
           + + P      K    K    +   + L+  + F  +L D  YI I  +N  N +   F 
Sbjct: 121 HYVVPNSSKVRKAFEKKYINNSKQKNALKYVSDFSLQLTDSTYIFIRSFNTENNVGNDFN 180

Query: 176 VDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK--SYTLQTES 232
            ++ +  +      A   S +       LN     R     +D SI              
Sbjct: 181 SETYNGLELISKLSADRLSYNNKDSIFTLNR-WRKRLVYKDRD-SIFSGSKMDTVFNFAP 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +       A +   + L+     +     + L  Y  E +KR +  +   I  +I++  
Sbjct: 239 KDLIYKSAFAQEMPSNELVAFINISKKRGVKNLNAYLVELYKRSSLPIASYILTIIAVAL 298

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLF----LFCIS 347
           A      R+R+    + +++ +     + F   + ++  +   +  + Y++    LF + 
Sbjct: 299 A-----FRKRRGGTGVNLAVGVGIMFLYVFFMKVGEVLGSVAGVNSLAYVWIPNILFGLI 353

Query: 348 SIFLLMIKKK 357
           +I+L    +K
Sbjct: 354 AIYLYFHARK 363


>gi|90021021|ref|YP_526848.1| SecD export membrane protein [Saccharophagus degradans 2-40]
 gi|89950621|gb|ABD80636.1| permease YjgP/YjgQ [Saccharophagus degradans 2-40]
          Length = 352

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 123/365 (33%), Gaps = 22/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI   I  +     L I+ +  +  ++ +++ +S    + +  +      IP+ 
Sbjct: 1   MTKLKRYIGHTIAAAVATVLLVILSLDAISDLVDQLSNLSGD-YTFSEAIIFVLLYIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     L  +  ++EL+++   G S + L+  V+    +      +    
Sbjct: 60  AYDYLPLSALVGCLIGLGVLASSSELVVMRAAGVSVLQLVWAVMRPVCVFIGVGVLVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDS 178
           + P          A A+        E  ++ R + + Y+  +   PN  L GI  +I D 
Sbjct: 120 VAPYSDQYADSRRALAKGHDRALQAERGVWNR-EGNEYMHFNAVLPNGKLYGITRYIFDE 178

Query: 179 RDTQ-----THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +             Y      + D +     DG + +    +++           +    
Sbjct: 179 KGQLLEASFVDSAIYQGEFWFEQDGEVTSFEDGRIEKFGFATREWRT--------EVSPD 230

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             + +VL A++  +  L +      + +      Y+  F  +  Q L      +I+I   
Sbjct: 231 LLNVLVLDADELPMKRLYD-YSTYLDKQGLDSSEYKLAFWHKAFQPLAVASLVMIAISFI 289

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLL 352
                +RQ      +FI + +   VF     ++        + P+   L    +  +  +
Sbjct: 290 LGP--LRQTTMGFRVFIGVIVGL-VFQTSQKMLGPASIIMGFSPMFAVLIPIVVCLVLGV 346

Query: 353 MIKKK 357
            + ++
Sbjct: 347 FLIRR 351


>gi|78356992|ref|YP_388441.1| permease [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219397|gb|ABB38746.1| permease, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 359

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 120/365 (32%), Gaps = 18/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+LR      +++      I  +  +  R++    +   L ++L      IP +
Sbjct: 1   MSILSRYLLRTNLFLTMLTLTIGTGIYLLSDLFDRLDDFLGAGLGLKVILTYFAVKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  M R+ EL+ +   G S + L +  +  A++ S        +
Sbjct: 61  ISQILPAVFLLSAVIQLCVMARDRELVALQAGGISFLRLARFFIIYALIWSAVQLGFSQV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           +         ++  +         ++    +  +    I +   +P      GI + +  
Sbjct: 121 LGIYGEREASRIWKEQVRNREIDEVQLTNLWFTEHGRIIHLETLHPAAQKGSGITVYELT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             +       +  S   D     L+  ++     I     +   +S  L  E    +  +
Sbjct: 181 PDELSVQRVIRGKSFRADSSGWTLDGCDI----LIPGSYEVATSESIVLPIEQDVKAFSI 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPE---LLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           +          L    +      E    +E  R+ +H +L+     V   L+++      
Sbjct: 237 VDPRGDPSRLPLWQLQDAIARLTESGSNVEALRTAWHMKLSYAFSLVTMALLALALI--- 293

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLL 352
               +      +  SL + F VF+    +   + +N    P+   +     F +S+I  L
Sbjct: 294 --TWRDSIYINVGTSLLLVF-VFYTLFTVGGSLGENGIVPPLFAAWTANAFFSLSAIARL 350

Query: 353 MIKKK 357
           +   +
Sbjct: 351 IYVSR 355


>gi|53713591|ref|YP_099583.1| hypothetical protein BF2302 [Bacteroides fragilis YCH46]
 gi|60681871|ref|YP_212015.1| hypothetical protein BF2391 [Bacteroides fragilis NCTC 9343]
 gi|253565580|ref|ZP_04843035.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52216456|dbj|BAD49049.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60493305|emb|CAH08089.1| putative membrane protein [Bacteroides fragilis NCTC 9343]
 gi|251945859|gb|EES86266.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301163363|emb|CBW22913.1| putative membrane protein [Bacteroides fragilis 638R]
          Length = 365

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 132/369 (35%), Gaps = 19/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  +LYI++    +++ +   I+ IA V    ++++     +   + I+       IP 
Sbjct: 7   IKRLDLYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKFMERSAPWSAIIFDYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++I  FI  +
Sbjct: 67  FANLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMLRPYMISAGIIAISTFILGS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P+    R   +    K +       ++      +D  +   I  Y   N     F +
Sbjct: 127 YVIPRGSVTRLDFEDKYVKKKKTTYVHNIQ----LEIDTGVIAYIDNYQDYNKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+S + D        + D  +     + +  +I++            
Sbjct: 183 DKFVDKKLVSHLTARSITYDTTAVNKWTIKDYMIRNLDGLKE--TIVRGDKMDSIIPMEP 240

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  ++++   + L+   L              ++ +  E+HKR+       I  +I +  
Sbjct: 241 ADFMIMRNQQEMLTSPQLSAYIDKQKQRGIANIKEFEIEYHKRIAMSFASFILTVIGVSL 300

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFL 351
               +  + +  +             +  F  +      N    P++ ++    + ++  
Sbjct: 301 ----SSRKTKGGMGLHLGIGLGLSFSYILFQTVASTFAVNGNMPPMIAMWIPNLLYALIA 356

Query: 352 LMIKKKYTK 360
             + +K  K
Sbjct: 357 FYLYRKAPK 365


>gi|254473284|ref|ZP_05086681.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
 gi|211957400|gb|EEA92603.1| permease YjgP/YjgQ [Pseudovibrio sp. JE062]
          Length = 363

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 22/366 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  LYI +   +S L   LF   +  +  +L+ +         SL  +  IS   +P +
Sbjct: 4   RTLSLYISKRFLKSILALFLFAAVLILLFDVLELVRRGGDREGFSLLRIAAISALRVPLL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF     +     +++R+ EL++    G S      P L   + + I   I  N 
Sbjct: 64  LEQVIPFAVLFGSIWAFVTLSRSLELVVARAAGISVWQFTAPALLTGLFIGIASVIGYNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDD-LYIKISKYNPNN-TLQGI 173
                +    ++ A+   ++  +YL E            D    +          TL G+
Sbjct: 124 GAVYLQQKSDEV-AEGLFSVEQTYLLEGSGEVWLRQNGTDGESVLHARHIGGQGATLNGV 182

Query: 174 FIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            I    R  +  +   A+   +        L D  V+      +      + +Y++ T  
Sbjct: 183 TIFSFDRQGEFSERIEARRAVLAEG--MWRLTDAVVYALDTDPQ-----HYDNYSVSTFL 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFGLISIV 291
             +       + +++SF   P     + R  L    Y  ++   L + L  ++  +I I 
Sbjct: 236 TPTEVKESIGSPESISFWSLPRFIELSQRAGLPAYRYSLQYQTLLAKPL--LLVAMIVIA 293

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYI--IHKIEQNPYYIPILYLFLFCISSI 349
           AA    + R       I   +   F ++        +      P  +      +F +   
Sbjct: 294 AAVSLRVSRFGGIGRLIIWGIIAGFVLYAVSEISKDLGGAGIVPTAVAAWAPGVFGVLMG 353

Query: 350 FLLMIK 355
           F +++ 
Sbjct: 354 FTILLN 359


>gi|320539288|ref|ZP_08038958.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
 gi|320030680|gb|EFW12689.1| putative conserved inner membrane protein [Serratia symbiotica str.
           Tucson]
          Length = 356

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 118/359 (32%), Gaps = 8/359 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + I  + +M+   +V ++ +I+ + ++  V     ++      +   +P  +
Sbjct: 3   GVLDRYIGKTIFNTIIMTLFMLVSLSGIIKFVDQLRRVGQGDYTVLGAGMFTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +   +EL+++  +G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGQLATRSELVVMQASGFTRMQIAGSVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DS 178
            P+         A+     +    +  L+ +  +D +I I + +    L G+ I    D 
Sbjct: 123 APQGDQMAHDFRAQQMYGGSLLSTKSGLWAKDGND-FIYIERVSGEKELAGVNIYHFNDR 181

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R  +   + YA + S +     +   D        +      +    +           +
Sbjct: 182 R--RLETVRYAATASFEDGVWKLSQVDTSDLTNEELVTGTQTLT-GEWKTNLTPEKLGVV 238

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L     ++  L N          +    Y+     ++   L   +  L+++        
Sbjct: 239 ALDPTSLSIKGLHN-YVKYLKQSGQEANRYQLNMWNKIFSPLSVAVMMLMALSFIFGPLR 297

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                      IS    F V       +  +   P  +  L   +  +     +++K+K
Sbjct: 298 SVPMGIRVVTGISFGFLFYVLDQIFGQLSLVYNMPPVLGALLPSMMFLLISMYMLLKRK 356


>gi|311103830|ref|YP_003976683.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
 gi|310758519|gb|ADP13968.1| hypothetical protein AXYL_00610 [Achromobacter xylosoxidans A8]
          Length = 392

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 127/371 (34%), Gaps = 25/371 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  + ++ +     ++  ++ V     S+  LL +    IPT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLMALLGLFTFFALVDDLDNV-GDKFSMMALLYMQALAIPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLRMLWIVTIPLMIGAGLLSEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPNNTLQGIFIV 176
           + P       + +   +       L    +F+          I I +   +  +  + + 
Sbjct: 120 VTPWAEIKSGEANLLFRGKAGGDRLNSGYWFKEPTADGGTRIINIGELKGDGQVSAVTLY 179

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS------------PISKDISIMKF 223
           +  +D     +  A +G        ++L D    R              P     +++K 
Sbjct: 180 EFKKDQTLSALSTAPTGLFTQGD--LLLKDVTETRLDDEAAEALANARPPKHPPATVVKL 237

Query: 224 KSYTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
               + T  +       VL     +++ LL+      N + +      +   ++L     
Sbjct: 238 PERNIDTTLSAERLLARVLTPERMSIATLLDYVDYLRNNQLQYGRQVVA-LWRKLAYPFT 296

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
            ++  +I+I A       R+      +FI + +  G F      ++      +   +  L
Sbjct: 297 LLV--MITIAAPIGLMQTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLGKWPAWLTAL 354

Query: 342 FLFCISSIFLL 352
                + I  L
Sbjct: 355 GPNIGAMIVAL 365


>gi|198283962|ref|YP_002220283.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667335|ref|YP_002426598.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248483|gb|ACH84076.1| permease YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519548|gb|ACK80134.1| YjgP/YjgQ family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 357

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 122/364 (33%), Gaps = 24/364 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +  + R +     +    ++ + ++ QI+ + +       S+  LL  +   +P V
Sbjct: 1   MKRADRLLFRGMLLYSSLVLAMLLTLVYIAQIIAKSSGPGHGVWSMTRLLSYAALQLPDV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     ++ ++ ++E++ +  +G S   L +P+L + +L +  +F     
Sbjct: 61  AYDVIPLALLLGALVWMSILSGHSEVIALRMSGWSVWRLEQPLLLVGLLGAGLMFALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD--DLY-------IKISKYNPNN-TL 170
           + P        ++A A  A+  +  E    F       L+       I++         L
Sbjct: 121 VIP--------VTAPAAEAMWANAGEPGAGFHNMGPRGLWLRYGTQIIQVGTVGDGGKIL 172

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           Q + I D R           +           L+D  + R +P    ++ +    + +  
Sbjct: 173 QNLHIADVRQGMVGINAMTTAAEAVFQGGHWYLHDVRLFRITPDQIQMTAVTETPWPVAL 232

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             A  S+         L  L   +          +  +   F +R++     ++  L+++
Sbjct: 233 HPATLSSFAHPTRTMTLPTL-WQSYQALQSGALNMNRFALAFWRRVSYPWVGLVMILLAV 291

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFS---YIIHKIEQNPYYIPILYLFLFCIS 347
                    R       +   L +  G  +      YI       P    +L + LF   
Sbjct: 292 PFV--TRNPRGGGLAARVMAGLVLGLGFHFLTEMSGYISVSGGIPPLAATLLPIALFAAV 349

Query: 348 SIFL 351
           +  L
Sbjct: 350 AGAL 353


>gi|110643218|ref|YP_670948.1| putative permease [Escherichia coli 536]
 gi|47155053|emb|CAE85252.1| putative permease [Escherichia coli]
 gi|110344810|gb|ABG71047.1| putative permease [Escherichia coli 536]
          Length = 359

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 133/369 (36%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSHYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK--------FKSYTLQTE 231
                   +A+S SI+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIFARSASIEDDKT-WILH-GVNHKKWLNGKETLETSDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSDYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                +  R       + + + +    +  +  +++         P+  L L     +  
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLMA 348

Query: 352 LMIKKKYTK 360
           L +   Y +
Sbjct: 349 LSLVYWYDR 357


>gi|290473525|ref|YP_003466395.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
 gi|289172828|emb|CBJ79599.1| putative transmembrane protein, transport [Xenorhabdus bovienii
           SS-2004]
          Length = 358

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 127/334 (38%), Gaps = 26/334 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I ++ LM+   +V ++ +I+ + ++  V     S       +   +P  +
Sbjct: 3   GVLDRYIGRTILQTILMTLFTLVSLSGIIKFVDQLRKVGQGEYSAFAAGIYTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L     +    +
Sbjct: 63  QIFFPMAALLGGLLGLGALATRSELVVMQASGFTRLQVAGSVMKTAIPLVFLTMVIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +   ++     +     + ++ +  +D ++ I   + +N L+ + I    D 
Sbjct: 123 APQGEQIARNYRSQKMFGGSLMSTAKGMWAKDGND-FVYIKSVDKDNALRDVSIYHFDDN 181

Query: 182 QTHKIY-YAQSGSIDLDRQAIIL---NDGEVHRKSPISKDISI-MKFKSY----TLQTES 232
           +      YA +   D + +   L    + ++ +   I+    I  ++KS      L   +
Sbjct: 182 KKLLSVKYAATAVYDQNNRQWKLSQVEESDLRQIGRITGSQRISAEWKSLLTPEKLGVVA 241

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +   + ++   Q +++L            +    Y+    K++   L   +  L+++  
Sbjct: 242 LDPDALSIRGLQQYITYLKQ--------GQQDAGRYQLNMWKKVFAPLSVAVMMLMALSF 293

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
                       +  + + + +  G+  GF + +
Sbjct: 294 IFGP--------LRSVAMGVRVIAGISTGFIFYV 319


>gi|89900898|ref|YP_523369.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
 gi|89345635|gb|ABD69838.1| permease YjgP/YjgQ [Rhodoferax ferrireducens T118]
          Length = 368

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 138/376 (36%), Gaps = 27/376 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLI 57
           MK+    I   +  +     L  + + +    ++ I  V   S +   L   L     +I
Sbjct: 1   MKTLRRLIYGEVLYAVAFVTLGFLSLFFFFDFVEEIQAVGRYSEAGYRLVHALTFVALMI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    + T  V+  + +++E  I+  +G      +K +L L +   +  F  
Sbjct: 61  PSHLYELLPIAVLIGTIFVMARLAQSSEFTILRTSGLGPWRALKALLLLGLGFVVLTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTF----SYLEENLFFRLDDDLYIKISKYNPNNTLQGI 173
            + I P      + L A+ Q ++T     ++L+E    + +    + +S   P+ +++G+
Sbjct: 121 GDYISPPADRAGQLLKARYQGSITVGQTGAWLKE---QQTNAQYAVNVSAMAPDGSMRGV 177

Query: 174 FIVDSRDTQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM------KFKSY 226
            + +  +         A+S     D  A  L+        P   D + +       F  +
Sbjct: 178 RVFEFDNQGFLMSTLQAESAQFGADD-AWNLSRVSRTEFPPRDADTARIDRAQLDSF-RW 235

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
             Q  +   +  +LK    +   L      +     ++ + Y  EF K++   L  ++  
Sbjct: 236 PNQISAEMVAAALLKPERMSTIDLF-QYIQHLRANSQVAQRYEIEFWKKVFYPLSCLVMV 294

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFL 343
           ++++  A      R       +F  +      F     F Y+ +     P+    L   +
Sbjct: 295 VLALPFA--YLHFRSGGIATYVFGGVMAGISFFLLNNVFGYMGNLQNWQPWLTAALPGMI 352

Query: 344 FCISSI--FLLMIKKK 357
           + + S+  F  ++ ++
Sbjct: 353 YLVLSLTAFGWLVLRR 368


>gi|300870020|ref|YP_003784891.1| putative permease [Brachyspira pilosicoli 95/1000]
 gi|300687719|gb|ADK30390.1| putative permease, YjgP/YjgQ family [Brachyspira pilosicoli
           95/1000]
          Length = 356

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 132/365 (36%), Gaps = 16/365 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F+ S +  V +  +  +  +++  +   E++   +       P  
Sbjct: 1   MKKLNSYLLKEFLSMFVGSLILFVILVTIADLSSKLSYYTEHPENMKYFITYHAARTPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP--VLFLAILLSIFLFISE 118
           L  + P      +T VL +  +N E+L + N+G S      P  ++ +A+ L +  F  +
Sbjct: 61  LYYLFPIALMFSSTYVLGTFVKNKEMLAVQNSGISLFKFSSPIFIIVIALCLGLIGFW-Q 119

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQG-IFIV 176
            +  P  + + +                 N+F    ++    I  +N  +N L   + + 
Sbjct: 120 FVAAPMNKISFEANDLGRGHKKGEYTGSLNIF--GANNYIYFIENFNFNDNYLTNTVIVK 177

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              D        + S   + + +      G +   +   K+IS+ +  +Y L        
Sbjct: 178 LKEDGAIDMRISSPSVRWNDNEKKWYAETGILAEFT-DKKNISVKEITNYPLDVLERPEH 236

Query: 237 TIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +   A D  +L+  ++              T  ++FH R++   +     +I ++A+  
Sbjct: 237 FMNRPALDSMSLTEEMH-WIKLRKEVNLNTNTLETDFHYRIS---YCFSGFIIVLLASLF 292

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL--FCISSIFLLM 353
                Q   +  + + + ++  V++    +   +       P +  ++     + +  L 
Sbjct: 293 SKFSTQSVLVVSLVMVIMVAL-VYYSILMMFRSMGDGGNMNPFIAAWMPNIIFAGLCFLA 351

Query: 354 IKKKY 358
            KK Y
Sbjct: 352 FKKFY 356


>gi|153820564|ref|ZP_01973231.1| conserved permease [Vibrio cholerae NCTC 8457]
 gi|126508893|gb|EAZ71487.1| conserved permease [Vibrio cholerae NCTC 8457]
          Length = 236

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 87/218 (39%), Gaps = 2/218 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+ +   + + A A        +   ++ R  +D +I I+K    +           + 
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEHLYGLNLWRFDENK 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
           +   + +++      + +  ++ D  + R    S+ + 
Sbjct: 182 KLSTVIFSEQVDYVANNE-WLMKDAVLTRLVMTSRSVK 218


>gi|114704780|ref|ZP_01437688.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
 gi|114539565|gb|EAU42685.1| hypothetical protein FP2506_07586 [Fulvimarina pelagi HTCC2506]
          Length = 360

 Score = 89.6 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 114/359 (31%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R    +F  + + +  +  +I +++       + +SL +LL  S   +P  + 
Sbjct: 5   TLNRYFFRLYLVNFFSTVVAVSALVLLIDLVELGRRSVLADQSLGVLLLFSALRVPAFME 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF     +   L S+NR  EL++    G S   ++ P +  ++ L +    + N + 
Sbjct: 65  QAFPFIILFSSIFTLISLNRRLELVVARAAGVSAWQILMPFIAGSLFLGLLATFAYNPLS 124

Query: 123 PKCRSTIKQLSAKAQ-LALTFSYLEENLFFRLDDDL--YIKISKYNPNNT-LQGI--FIV 176
              ++    + + A+   +  S L+     +  D +   +  ++   N   L  +  F++
Sbjct: 125 AYTKAQAANIESAAEGREVASSALQTPWLRQNADGVRSIMGATQVAENGRVLSNVSAFVM 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + D        A    +      ++       R + I      +               
Sbjct: 185 -ADDGSVETRIDAPRAELGNQEWILL-----RPRVTRIGYTPRDLVEYRLPTSLRPEYIE 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             +      ++  L     +           +  ++H  + Q    V   L++  A    
Sbjct: 239 QRLADPETISIWEL-GSKIDVAASLGFNSMAFSMQYHTLIAQPALFVAMTLLA--ATVAT 295

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN------PYYIPILYLFLFCISSI 349
              R  +        +   F ++            +        + P+L   LF ++ +
Sbjct: 296 RFSRTGQPGRIFVGGVLAGFVLYVVTFLAKALGSNDVVPPIVAAWFPVLAAGLFGVTIL 354


>gi|300900316|ref|ZP_07118495.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300356206|gb|EFJ72076.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 315

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 117/324 (36%), Gaps = 19/324 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSIS 315
                           + + + + 
Sbjct: 291 FTFSAPRSPGMGSRLAVGVIVGLL 314


>gi|291296717|ref|YP_003508115.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471676|gb|ADD29095.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 338

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 110/356 (30%), Gaps = 33/356 (9%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR     +L+  L  V +     +         +   +  ++++  Y +P  L +
Sbjct: 2   LPRYLLRETLSLYLLGVLLFVGLITFDLLSSLSGAFLRARTPVGEIVQMVAYRVPHTLGI 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L    R +EL      G      I PVL LA+ +   + ++E  ++P
Sbjct: 62  ALPLGLVFALLVALARWIRQSELKAAYAAGIPPRVFIGPVLLLALAVGAVVLLNEGWLKP 121

Query: 124 KCRSTIKQLSAKAQL-ALTFSYLEENLFFRLDDDLYIKISKYNP------NNTLQGIFIV 176
             +   + L  K    +     L E  +      +Y    +  P       + L+G+ +V
Sbjct: 122 IAQERFEALQYKIYYGSEPSGVLTERTYTPQGLGIY-YAQRIYPPPEGQTGSRLEGVRVV 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           +S       ++ A+ G        +       +R  P  +            + E     
Sbjct: 181 ES----GGSVWSAERGVWVSGAWRLQ----NAYRVDPSGQIFQ---------EAEHPLPF 223

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            + ++    +   L  P  +         +   +   +R    +  V+   ++IV     
Sbjct: 224 PVGVQPKAVSYEALRMPELHAVASADPAAQFPLA---RRYANAVGTVVLAWLAIVIGLS- 279

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                R+        + + FG +  F+        +       +L       + LL
Sbjct: 280 ----LRESAWAFIAVVGLIFGYWTLFTLSAQFARFDLLGAYGAWLPNIVYGGLALL 331


>gi|282892298|ref|ZP_06300694.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497889|gb|EFB40240.1| hypothetical protein pah_c221o032 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 361

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 122/336 (36%), Gaps = 24/336 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
             +E Y  R + + F +       +  +I         S+  +  + +     Y +   L
Sbjct: 9   SIWERYFFREVVKLFCVFIGSFYGLYVLIDFSSHTTQFSTHFQ-WSEIFSYYFYELIRRL 67

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ PF   + T   L S++ N EL+ +  +G S  +L++P + + +  ++ ++ +   +
Sbjct: 68  DVILPFALMLATIKTLCSLSTNNELVALMASGMSLKSLLRPFIIIGLFFTVLMYGNAEFL 127

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNTLQGIFIVDS 178
            PK +  +KQ+    +     + LE   F +   LDD   I    Y+        F  DS
Sbjct: 128 LPKAQKGLKQIHD--RHTSLKNKLENRGFVQHIILDDQTQILFQYYDEERQ----FFFDS 181

Query: 179 R-----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                 D      Y      + L R    L     ++   + +  S ++ +   +     
Sbjct: 182 YWIKSADDIFRIKYLFPHLEVPLGRYVHHL---TRNQNDELVESASFVEKEFPQIYFNQK 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                +    +Q+L+ L+   P+N     E      S F+ ++      + F +I+    
Sbjct: 239 KLQETLSLPEEQSLTDLVQQLPHNNRISHEKEAQVVSHFYHKMALPWLCL-FAVIA---- 293

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
                VR  + + P+F+  + S      F   +   
Sbjct: 294 PAPFCVRFSRGL-PVFMIYACSIFGLITFYLTMDAA 328


>gi|34540317|ref|NP_904796.1| hypothetical protein PG0501 [Porphyromonas gingivalis W83]
 gi|34396629|gb|AAQ65695.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 360

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 123/360 (34%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +   + Y+++    +F+ S + I+ ++ V  I ++I+       SL +I+       +P 
Sbjct: 4   LNRLDKYLIKQFLGTFVFSIILIISVSVVFDINEKIDDFMKPEVSLRSIIFDYYFNFVPY 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ + + G S   L+ P +  A +++I  F+  +
Sbjct: 64  YANLFSPLFVFISVIFFTSKLAEKSEIIAMLSAGVSFKRLMVPYMLSATVIAILTFLLNS 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDS 178
            + P   +T      K        Y  E++   +   ++     Y+        F + + 
Sbjct: 124 FVIPPGNATRIDFQNKYIKNKKVQY-AESVQLEVKKGVFAFFGSYSDAMRTGYQFSLEEF 182

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           +  Q      A     D       + +  +       + +         +    A+    
Sbjct: 183 KGKQLVSRLTADRIQYDSLYN-WRIFNYRIRHFGKYKETVESGSEMDTVIAVRPADFLVA 241

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                    + L     +        ++ +  E HKR        I  +I   A+     
Sbjct: 242 EDDVETMTTTDLHTYISHQKQRGVGNVKLFEIELHKRYAAIFSAFILTIIG--ASLSSRK 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           V+    I+ I I L +SF  +  F  +      +    P +  +L  F  + I + + KK
Sbjct: 300 VKGGMGIN-IAIGLGLSFA-YILFMTVAGTFAISGSLPPFMAAWLPNFVFTVIAVSLYKK 357


>gi|114319721|ref|YP_741404.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226115|gb|ABI55914.1| permease YjgP/YjgQ family protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 7/361 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++  + Y++  +  S L++ + I+ +  V   +     + ++       L       P+ 
Sbjct: 2   IRLLDRYLIITVVASALVALVVIMSLDLVFSFVDEGGDIGTADYGPLSALAYVLLSSPSR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   +     L ++    EL ++   G S + + + V    ++L++        
Sbjct: 62  AYEAFPFATLIGALMGLGALAARNELTVMRAAGVSVLQIARAVAAGGLVLALIAMAMGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P       +L A A            L+ R D   +I++ +      L+G+ I   + 
Sbjct: 122 VVPPAERAATELRASAMARDVGISGAGGLWAR-DGGQFIEVRRARSPAHLEGLTIYHFEE 180

Query: 179 RD--TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           RD    T +   + S ++  D + I+   GEVH  +       +   K +      A   
Sbjct: 181 RDGEPMTLRRVLSGSEALFRDGRWILREPGEVHLHADGISVADLGDEKVWESALSPAVLD 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +V+     +++ L                 +R  F  ++   +  +   L++I      
Sbjct: 241 VVVVDPESLSMADL-RTYIGYLEANELDSGEWRLAFWVKVATPISTLAMLLLTIPLVFGA 299

Query: 297 ALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                  +   I + + ++F +     ++        P    +L  F F  + I  ++  
Sbjct: 300 VRSTGAGQRIFIGVLIGVAFFLVNRMLNHAGVVFGLPPSASALLPAFAFLAAGILGILKV 359

Query: 356 K 356
           +
Sbjct: 360 R 360


>gi|301643655|ref|ZP_07243696.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|301078039|gb|EFK92845.1| conserved hypothetical protein [Escherichia coli MS 146-1]
          Length = 349

 Score = 89.6 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 129/361 (35%), Gaps = 21/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMDLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                +  R       + + + +    +  +  +++         P+  L L     +  
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPIAFVLVA 348

Query: 352 L 352
           L
Sbjct: 349 L 349


>gi|299065987|emb|CBJ37168.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CMR15]
          Length = 401

 Score = 89.2 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 94/284 (33%), Gaps = 29/284 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 7   MQVYEKYFARQIYGVFVFILFAVLALFVFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  +I    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   S     ++ +       D        ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVGTLQPDQT 185

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +QG+ I +   D +   I  AQ               G  H +     +   ++F  +  
Sbjct: 186 IQGLRIYEFDTDYRLSSIRVAQQARY----------QGHQHWELNDVTETRFIEFPRHAG 235

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
                +S   V  A D      L P+      R    +  RSE 
Sbjct: 236 GATPQDSKQAVPGAPD-----ALAPDFRGEQTRL-PKQDMRSEL 273


>gi|325282782|ref|YP_004255323.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
 gi|324314591|gb|ADY25706.1| permease YjgP/YjgQ family protein [Deinococcus proteolyticus MRP]
          Length = 402

 Score = 89.2 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 6/200 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  +    L   L    +            +     +  ++ +  GY +P  
Sbjct: 1   MSRINRYILSELIPPLLAGVLLFTALLSFGYFFVSSQWL--QGVAPGLVAQWIGYQVPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      +N   EL+ + + G       +PV  + +LL++        
Sbjct: 59  LVKVLPMAAVLMTIVAFGRLNTERELVALQSGGIGLGQAGRPVALIGLLLALLSLWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIV--D 177
           + PK     + L          S +       L   L +  + Y+P    LQ +      
Sbjct: 119 VAPKANVETRSLYWDVMTGSGLSSM-AGRTLDLGGGLNVYWAGYDPATRKLQNVRAERWS 177

Query: 178 SRDTQTHKIYYAQSGSIDLD 197
             D +  ++ +A+ G+ + +
Sbjct: 178 KDDPKRVELVFAREGTFEDN 197


>gi|170729351|ref|YP_001774784.1| hypothetical protein Xfasm12_0115 [Xylella fastidiosa M12]
 gi|167964144|gb|ACA11154.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 361

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 102/281 (36%), Gaps = 17/281 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 1   MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 61  LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T L  +F+   +
Sbjct: 121 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 180

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D     +  A+ G +       + + L DG+           +  ++ F          +
Sbjct: 181 D-DRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELS 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                   +      L+           +     +++ H R
Sbjct: 240 VVYDSNHPDILPTFNLI----------GDPRREAQAQLHAR 270


>gi|293406596|ref|ZP_06650522.1| predicted protein [Escherichia coli FVEC1412]
 gi|298382335|ref|ZP_06991932.1| predicted protein [Escherichia coli FVEC1302]
 gi|291426602|gb|EFE99634.1| predicted protein [Escherichia coli FVEC1412]
 gi|298277475|gb|EFI18991.1| predicted protein [Escherichia coli FVEC1302]
          Length = 342

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 117/324 (36%), Gaps = 19/324 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+             F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    YR    ++L Q +  +   L+++ 
Sbjct: 266 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYRLALWEKLGQPILTLAMILLAVP 317

Query: 292 AADKRALVRQRKKIHPIFISLSIS 315
                           + + + + 
Sbjct: 318 FTFSAPRSPGMGSRLAVGVIVGLL 341


>gi|297171530|gb|ADI22528.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF0500_09M11]
 gi|297182284|gb|ADI18453.1| predicted permeases [uncultured Oceanospirillales bacterium
           HF4000_13G19]
          Length = 353

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 9/359 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  R +    L     IV +  +   +  +  +    + +   L+     +P  
Sbjct: 1   MTLLKRYFWRSVLLPSLAIVAIIVGLDCLFSFIYELEFLRGGYQVMQA-LQFVLTTVPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L  M  + EL +I   G S + +   VL   I L +        
Sbjct: 60  FHEYLPMAILLGTLIGLGLMANSGELSVIRAAGVSTLQVSWMVLRPVIFLMLLSIPVGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P     + Q +   Q     +   E  F+  + D +I I+   PN  L G+     + 
Sbjct: 120 LAPYT-EQVAQSNRSLQEGGGEALRSEYGFWHREGDEFIHINTVQPNGVLYGLTRYRFND 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D Q  +  + +      D   +    G   R      +        +         S +V
Sbjct: 179 DHQLEESQFVERALYQGDHWTLQNIQGT--RFGDDRTETYTEGGGRWDTSLTPQLLSIVV 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRA 297
           L+     ++ L N          +  +   + F ++L      +   LI+   +    R 
Sbjct: 237 LEPRRLAMAKLWNYTRYMKEQGLQSADYMLA-FWQKLLMPAATIGMVLIAISFIFGPLRE 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +    +    I   L+ ++G  + F ++       P     L   L  +  I+LL+  +
Sbjct: 296 VTMGLRMAAGIVAGLTFNYGQQF-FGHLSLVFRTEPLLAAGLPPLLCLVLGIWLLLRVR 353


>gi|126736392|ref|ZP_01752134.1| putative permease [Roseobacter sp. CCS2]
 gi|126714213|gb|EBA11082.1| putative permease [Roseobacter sp. CCS2]
          Length = 364

 Score = 89.2 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 115/364 (31%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y      RSFL   +    I   + ++ ++    S   +   LL +S   IP    
Sbjct: 2   ILHRYFASRFLRSFLGVGMVFFLIMLFVDLVDQLRRFGSKDATFVDLLMLSLLNIPQAFY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  S++R++E+++    G S +  +   L +A+L+ IF     N I 
Sbjct: 62  AILPLIMILATIALFLSLSRSSEMVVTRAAGRSALHSLLAPLTVALLVGIFAVGVMNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF-------SYLEENLFFRLDDDLYIKISKYNPNNT-LQGI- 173
                  +  S   +   +         +L +           I+    N + T L  + 
Sbjct: 122 AGTSKEFEARSDALRGDSSVLSFGSSGLWLRQG---NATGQTVIRAQSANLDGTLLTDVT 178

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG-EVHRKSPISKDIS-IMKFKSYTLQTE 231
           F+  + D        A S  +     A +L D          + + S  +  +     T 
Sbjct: 179 FLTFAPDGNPITRISAASAELTTG--AWVLRDAKSWQLAGVTTPEASAQLDAERTVQSTL 236

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           + +              + L    +         + +   FH  L   +F V   LI   
Sbjct: 237 TPDQIRDSFGTPSSIPIWELPAFIDRLQTAGFSAQRHLVWFHTELALPIFLVSMVLIGAS 296

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIF 350
                   R  +    +  ++ ++F  ++  ++     E     + +  +   F    I 
Sbjct: 297 FTL--RHQRGGRTGMMVMFAVLLAFVTYFIRNFAQVLGENGQLPVLLAAWAPPFAAIGIS 354

Query: 351 LLMI 354
           +  +
Sbjct: 355 MGFL 358


>gi|94985285|ref|YP_604649.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
 gi|94555566|gb|ABF45480.1| permease YjgP/YjgQ [Deinococcus geothermalis DSM 11300]
          Length = 381

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 6/204 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R +    +   L    I            +      + ++ +  GY +P  
Sbjct: 1   MTRLTRYVTRELLPPLVAGTLLFTAILSFGYFFISSQWL--RGVPVGLIGQWIGYQLPDT 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V P    + T      +    EL+ + + G     + +PV  +A L++         
Sbjct: 59  LVKVLPMAVVLMTVVAFGRLATERELVAVQSGGIGLGQVARPVAVVAALVTALAVWLSLW 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVD-- 177
           + P+     + L          S +       L D+L + +  Y+     LQ + +    
Sbjct: 119 VAPRANVETRGLYWDVLTGAGLSQVV-GKTVDLGDNLTLWLGGYDAAGRKLQNVRVERWA 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI 201
             D Q   + +A SG+ + +R ++
Sbjct: 178 KDDPQRTTVIFADSGTFENNRLSL 201


>gi|24114287|ref|NP_708797.1| hypothetical protein SF3026 [Shigella flexneri 2a str. 301]
 gi|30064334|ref|NP_838505.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|24053443|gb|AAN44504.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30042591|gb|AAP18315.1| hypothetical protein S3227 [Shigella flexneri 2a str. 2457T]
 gi|281602370|gb|ADA75354.1| putative permease, YjgP/YjgQ family [Shigella flexneri 2002017]
 gi|313648097|gb|EFS12543.1| hypothetical protein SF2457T_3697 [Shigella flexneri 2a str. 2457T]
 gi|332752655|gb|EGJ83040.1| hypothetical protein SFK671_3613 [Shigella flexneri K-671]
 gi|332754439|gb|EGJ84805.1| hypothetical protein SF274771_3586 [Shigella flexneri 2747-71]
 gi|332765461|gb|EGJ95679.1| hypothetical protein SF293071_3543 [Shigella flexneri 2930-71]
 gi|333014735|gb|EGK34080.1| hypothetical protein SFK304_3819 [Shigella flexneri K-304]
          Length = 359

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 130/366 (35%), Gaps = 26/366 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD--------ISIMKFKSYTLQTE 231
                   YA+S +I+ D+   +L+ G  H+K    K+             F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WVLH-GVNHKKWLNGKETLETLDNLAWQSAFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   +T  ++  +  + +L            +    Y     ++L Q +  +   L+++ 
Sbjct: 239 SMPGNTFSVRQLNHYIHYL--------QETGQPSSEYHLALWEKLGQPILTLAMILLAVP 290

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCI 346
                +  R       + + + +    +  +  +++         P+  L     F+   
Sbjct: 291 F--TFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVA 348

Query: 347 SSIFLL 352
            S+   
Sbjct: 349 LSLVYW 354


>gi|297565136|ref|YP_003684108.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
 gi|296849585|gb|ADH62600.1| permease YjgP/YjgQ family protein [Meiothermus silvanus DSM 9946]
          Length = 346

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+ R +G + L     IV       + + +  +        ++ +   + +P  
Sbjct: 1   MSPLDRYLWREVGAAVLGGLAVIVLAFIGGYLYEVLAPLLQRGADPWVVAQYLAFRVPDA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P         VL+ M   +EL      G S + ++ P+L LA +L I   +    
Sbjct: 61  LVRGLPIAMLFALLLVLSRMGEESELKAFLAGGISPLRVLFPLLLLAAVLFISGVLIGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I PK   + + L  +A      + L     F       + + + +    + G+ ++ + +
Sbjct: 121 IAPKATQSGQSLLRQAVFQKPRALLAPGSTFTDAYGRILYVGQADEGG-IGGVRVITAEE 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                I  ++    +  +  ++L  G     +      ++ +F+  T+      +     
Sbjct: 180 -----ILLSERAHFEGGQ--LVLEGGSRVTYAGSRPR-TVARFERGTVPLVEL-AQDAPG 230

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +   L+ L +          +    Y +E      +W  P      ++ A      + 
Sbjct: 231 GLSALTLAELHSRIRQY----RQSGLPYHAELTAYYRKWAEPAAAFAFTVFAVGLSFFLL 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKK 356
              +   +   + ++F  +  +S +   + +     P+L  +    L+ ++   LL + +
Sbjct: 287 GGSRNLGMVGVVVLTFFYYATWS-VGRIMGEAGALPPLLAAWGPGTLYAVAGAVLLGVGR 345

Query: 357 K 357
           +
Sbjct: 346 R 346


>gi|193062018|ref|ZP_03043114.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300824069|ref|ZP_07104190.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331669796|ref|ZP_08370641.1| putative permease [Escherichia coli TA271]
 gi|192932238|gb|EDV84836.1| putative permease, YjgP/YjgQ family [Escherichia coli E22]
 gi|300523459|gb|EFK44528.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331062709|gb|EGI34623.1| putative permease [Escherichia coli TA271]
          Length = 359

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 132/369 (35%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   ++  ++  +  +++L            +    YR    ++L   +  +   L+++ 
Sbjct: 239 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPILTLAMILLAVP 290

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    + + L          +  +      P     L +     + I
Sbjct: 291 FTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALI 350

Query: 350 FLLMIKKKY 358
            + +  +++
Sbjct: 351 LVYLFDRQH 359


>gi|331679053|ref|ZP_08379725.1| putative permease [Escherichia coli H591]
 gi|331073118|gb|EGI44441.1| putative permease [Escherichia coli H591]
          Length = 386

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 132/369 (35%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   ++  ++  +  +++L            +    YR    ++L   +  +   L+++ 
Sbjct: 266 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPILTLAMILLAVP 317

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    + + L          +  +      P     L +     + I
Sbjct: 318 FTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALI 377

Query: 350 FLLMIKKKY 358
            + +  +++
Sbjct: 378 LVYLFDRQH 386


>gi|146328919|ref|YP_001210037.1| hypothetical protein DNO_1153 [Dichelobacter nodosus VCS1703A]
 gi|146232389|gb|ABQ13367.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 349

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 122/358 (34%), Gaps = 15/358 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  ++ +I R I    ++  +F++ I +++Q  +  + +        ++L I    +P  
Sbjct: 2   ITLYDRHIARIITAHIIIVLIFLLGIDFLVQSAEESDNIGRGNYHFWLMLSILLLNVPAR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    + T   L  +N+  EL +I  +G SR+ L    L +A  L   L +    
Sbjct: 62  IVEFMPAAVLVGTITALGQLNKQQELTVIRTSGISRLRLSLSGLMIAFFLGCALIVLAEY 121

Query: 121 -IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P       Q      L  T    +  ++ R  D++ + I  +  + +L+ I      
Sbjct: 122 GVAPAQNRA--QWLHHHALNTTAPQTDHGIWLRDGDNI-VYIGAFQADGSLEKIRFY-RP 177

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                +I  +Q  +       +   D            + I     +  +   A  + ++
Sbjct: 178 HEHDLEIQESQRATFMQTHWQL---DDNRALCIGSQSSMPITPTTHWQNRILPATIAQLM 234

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              N   L  L         ++    +    +  +R+   +  +   ++++         
Sbjct: 235 QLKNAYTLRELYTITGFLRAHQLND-QQMSLKLWQRIFLPITTITMVILALPCV---FNT 290

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIH---KIEQNPYYIPILYLFLFCISSIFLLMI 354
           R+      + I + +    +     +      +  +     +L + +F +  +FLL  
Sbjct: 291 RRDGNGARLVIGILLGASYYVVQGIVTKLGLLLHWSTALSALLPILIFALPPLFLLTR 348


>gi|321222550|gb|EFX47622.1| putative Permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 336

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 120/340 (35%), Gaps = 12/340 (3%)

Query: 25  FIAWVIQILQRINLVSSSTESLNILLK---ISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
            +  +  I++ ++ +  + +     L     +   +P  + +  P    +     L  + 
Sbjct: 1   MLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGMLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           + +EL+++  +G +R+ +   V+  AI L +        + P+     +   A+A    +
Sbjct: 61  QRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGS 120

Query: 142 FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSRDTQTHKIYYAQSGSIDLDR 198
               ++ L+ +  ++ ++ I +   +  L GI I    D R  +   + YA S   D + 
Sbjct: 121 LLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAFNDQR--RLQSVRYAASAKFDPEH 177

Query: 199 QAIILND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNN 257
           +   L+   E   ++P     S     ++           + L  +  ++S L N     
Sbjct: 178 KVWRLSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHN-YVKY 236

Query: 258 PNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFG 317
                +    Y+     ++ Q L   +  L+++                   IS    F 
Sbjct: 237 LKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFY 296

Query: 318 VF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           V    F  +       P    +L    F + S++L++ K 
Sbjct: 297 VLDQIFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRKS 336


>gi|260912301|ref|ZP_05918852.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633602|gb|EEX51741.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 402

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 124/361 (34%), Gaps = 18/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+R    +++ S L I+ IA V  + + +   +     L  I+       +P 
Sbjct: 42  LKILDWYIIRKFIGTYVFSILLIISIAIVFDVNENLAKFTQFHAPLKAIVFDYYANFVPY 101

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +   +E++ +   G S   L++P +   +L+S   F    
Sbjct: 102 FANLFSPLFVFISVIFFTSKLAGTSEIISMLAAGVSFNRLMRPYMVSCLLISGLSFYLSG 161

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     +   + +   ++   +   ++     ++D  +   I  Y+        F +
Sbjct: 162 YVIPHGTVIKQNFESMYKNSKKNTSAENVQ----LQVDRGVIAYIQHYDDKAKRGYGFSL 217

Query: 177 DSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           D  + +    +   S     +I   +    +++  +     + + I+    K   +  E 
Sbjct: 218 DKFENKKLVSHMTASEIQYDTISDSKYHWQVSNWRIREMKALREKITYGDRKDTLIMMEP 277

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A+      +        L              +  Y  E+HKR+       I   I +  
Sbjct: 278 ADLVFSKGQQETFTNPELSAYISKQIGRGSSNVVQYEVEYHKRIAASFASFILTTIGLSL 337

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSI 349
           + ++   R+      + I L++SFG        +      +  P     +   LF + + 
Sbjct: 338 SSRK---RKGGMGLYLGIGLALSFGYILLQTVSATFAVNADTPPMLAAWIPNLLFAVVAY 394

Query: 350 F 350
           F
Sbjct: 395 F 395


>gi|294012649|ref|YP_003546109.1| putative permease [Sphingobium japonicum UT26S]
 gi|292675979|dbj|BAI97497.1| putative permease [Sphingobium japonicum UT26S]
          Length = 367

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 123/357 (34%), Gaps = 11/357 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ R            +V +   + +L    ++++ +      L        P +
Sbjct: 10  RQLGWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L S+N+N+E++ +   G S   ++ P+L  A+ +++  +     
Sbjct: 70  VARFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNER 129

Query: 121 IEPKCRSTIKQLSAKAQLAL-TFSYLEENLFFRLDDDLYI--KISKYNPNNTLQGIFIVD 177
           I  +  + +    A     L   + ++ + + R  ++L     ++       L+ + I +
Sbjct: 130 IVARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFN 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +     I  A  G  D   ++ +L D    +          +    +         + 
Sbjct: 190 RINNTLTTIVQAPRGHYDASTRSWVLED--ARQFDVARGTERQIGTVRFGRDIRPDQFTL 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +    S L     ++ +               +L+  L  ++  ++  VAA   A
Sbjct: 248 AKVDPDALTFSQL-QAAISDLHDAGRPTAELEGSLWHKLSGPLSALLMPILGSVAAFGLA 306

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP----YYIPILYLFLFCISSIF 350
              Q      + ++L  ++ V   FS  +  +   P     + P L   L   + +F
Sbjct: 307 RSGQLFVRAVLGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLF 363


>gi|330752461|emb|CBL87411.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
          Length = 357

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 128/361 (35%), Gaps = 8/361 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YIL+    +F +  L  + I   + + ++I+ +  +    + +           
Sbjct: 1   MKIFDWYILKRYLLTFFLMLLLFIPIGITVNLAEKIDRILENKVPFDEVAAYYFDFTIYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++   ++G S    ++P      +++I        
Sbjct: 61  ANLLFPLFLFLSVIWFTSKLANNTEVIAFLSSGISFFRFLRPYFIGGTVIAIVALFLGMY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             PK      + + K          +  ++ +++DD YI +S ++ N+     F ++  D
Sbjct: 121 WAPKASKGYNEFTYKYLSNKKAVQSQY-IYQQINDDEYIYVSNFDSNSMRGNNFTLEHFD 179

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   +A +           L++  +         I   +     L  +  + +   
Sbjct: 180 GNKLEYKIHASAIRFIEKDSNYRLSNYYLRYIGKDHDSIIFKRRIDTLLGFDLLDLTPPK 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
             A    +  L +            +  Y+   +K   +W  PV   +++I+A    ++ 
Sbjct: 240 YVAETLTVHELSDFIKREEARGSSNINRYKVVQYK---KWSLPVSVYILTIIAVAVSSIK 296

Query: 300 RQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+      +   + I+    +    F  +  + +  P        F+F I +I+LL   K
Sbjct: 297 RRGGMGVNLAFGIVIAMVYVFFDKVFGVMAEQSDFPPVVAVWFPNFIFGILAIYLLFNAK 356

Query: 357 K 357
           +
Sbjct: 357 R 357


>gi|238028371|ref|YP_002912602.1| hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
 gi|237877565|gb|ACR29898.1| Hypothetical protein bglu_1g28320 [Burkholderia glumae BGR1]
          Length = 382

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 127/380 (33%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V     +    +       P+ 
Sbjct: 1   MRLYEKYFARQIYLTFIFVLFAFSGLFFFFDLISELNSVGHGAYNFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKC-----RSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQ 171
           I P       R  ++ L +            ++     D+      ++ +   +P++T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFASGVWVKDTLTARDNGEPVTRFVNVGTLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD------------- 217
            + I +     Q   +  A+SG         +L D    + +PI  D             
Sbjct: 181 NVRIYEFDSKFQLQNVRIAKSGRYAP-PGHWLLTDVTDTQLTPIPPDSHAPKDALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y+L+++ +    +++L + ++   F L     +     +  +TY     ++L
Sbjct: 240 SEQVSMPQYSLRSDLTPQILSVLLVSPERMSIFNLFRYIQHLRENQQDTQTYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A                I L +SF +F      I  +  N +  
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAALPALIYLALGLFALK 377


>gi|329907054|ref|ZP_08274546.1| putative Membrane protein; putative permease [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547111|gb|EGF31985.1| putative Membrane protein; putative permease [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 378

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 125/382 (32%), Gaps = 28/382 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  + I R+ L   L  + +     ++  +  V      +          +P  
Sbjct: 1   MTVLQKYFGKEILRAVLFVLLAFLALFAFFDLINELPAVGRGGYKIQHAFLYIALGLPGY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +  VL  M  N+E  I+  +G S       +  + ++  +  F+   +
Sbjct: 61  TYELMPIAALIGSIYVLAQMASNSEFTIMRVSGLSTRQAGFMLAKIGLIFVLITFLFGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR---------LDDDLYIKISKYNPNNTLQ 171
           I P      ++L  +AQ   T       L+ +         +    ++ + +  PN  L+
Sbjct: 121 ISPLTAERAERLKQQAQGT-TSKEFRSGLWTKDQIRDGSGAMIGSRFVNVGELLPNGQLK 179

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-----------SPISKDIS 219
            + + +   + +   +  A +     DR+  +L+D    R               S   +
Sbjct: 180 DVKLYEFDSELRLTSMVTASTADFQGDRR-WLLSDVATTRFALTVFNLAVLPDAPSGIAT 238

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
                   +   + +  ++     D+  +  L     +     ++ E Y   F K++   
Sbjct: 239 TTAPTRELISDITPDILSVTFADPDRMSALDLATYTRHLAENRQVTERYDIAFWKKIIYP 298

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF---GVFWGFSYIIHKIEQNPYYI 336
               +F ++++         R       IF+ + I      +   FS+I       P   
Sbjct: 299 FA--VFVMMALALPFAYLHARSGGVSLKIFMGIMIGVSFKLINSLFSHIGLLNTWPPLAT 356

Query: 337 PILYLFLFCISSIFLLMIKKKY 358
            I    LF   ++  L   +++
Sbjct: 357 AIAPSLLFLAGALGALWWVERH 378


>gi|238897462|ref|YP_002923139.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465217|gb|ACQ66991.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 367

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 124/355 (34%), Gaps = 7/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ ++++  V     S+      +   +P  +
Sbjct: 4   GILDRYIGRSILNTIIMTLFMLVSLSGIIKFIEQLRKVGEGNYSVFAAAIYTLLSVPNDI 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G S + ++  V+  AI+L +   I    +
Sbjct: 64  MIFFPMAALIGGILGLGALATRSELVVVQASGFSHMQIVLSVMKTAIILFLLSIIIGEWL 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P    T      K     +    +  ++ +   D +I I++   ++ L G+ I      
Sbjct: 124 APLADQTASHYRTKMIYGGSVISTQSGIWAKDKSD-FIYINQVINHHELSGVHIYHFDAH 182

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                  YA +   +     +   D      +   +    +  + +           + +
Sbjct: 183 DRLISIRYAATAIFEKGAWQLSQIDESNLSDTKKIQGSQTLS-EKWETSLTPYKLGIVAM 241

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL--ISIVAADKRAL 298
             +  ++  L +          +  + Y  +  +++       +  L  +S +    R+ 
Sbjct: 242 DPDSLSIMGLYD-YVKYLKQVGQDSDRYELKMWQKIFSPFSITVMILLSLSFIFGPLRST 300

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
               + +  I         +   F  +    + +P     L   LF   S++LL+
Sbjct: 301 ATGLRIVTGICFGFVFYL-LDKIFGPLSLLYQFSPILGAALPSVLFFSISLYLLL 354


>gi|293449327|ref|ZP_06663748.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
 gi|291322417|gb|EFE61846.1| hypothetical protein ECCG_02358 [Escherichia coli B088]
          Length = 359

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 132/369 (35%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ V+         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVNPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   ++  ++  +  +++L            +    YR    ++L   +  +   L+++ 
Sbjct: 239 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPILTLAMILLAVP 290

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    + + L          +  +      P     L +     + I
Sbjct: 291 FTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALI 350

Query: 350 FLLMIKKKY 358
            + +  +++
Sbjct: 351 LVYLFDRQH 359


>gi|218696688|ref|YP_002404355.1| hypothetical protein EC55989_3395 [Escherichia coli 55989]
 gi|218353420|emb|CAU99485.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli 55989]
          Length = 386

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 132/369 (35%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ V+         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVNPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 265

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   ++  ++  +  +++L            +    YR    ++L   +  +   L+++ 
Sbjct: 266 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPILTLAMILLAVP 317

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    + + L          +  +      P     L +     + I
Sbjct: 318 FTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALI 377

Query: 350 FLLMIKKKY 358
            + +  +++
Sbjct: 378 LVYLFDRQH 386


>gi|241663807|ref|YP_002982167.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
 gi|240865834|gb|ACS63495.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12D]
          Length = 397

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 122/398 (30%), Gaps = 43/398 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 3   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGRYTTLVAFFHVM-LQAPTR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  +I    
Sbjct: 62  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYIFGEF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ +
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKADGTGGEVTRFVNVGALQPDQS 181

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK----------------- 211
           ++G+ I +   D +   I  A+        Q   LND    R                  
Sbjct: 182 IKGLRIYEFDSDYRLSSIRVAEQARYQ-GHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQ 240

Query: 212 -SPISKDISIMKFKSYTLQTE--------SANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             P + D     F+    +          +    ++++   D+  +  L     +     
Sbjct: 241 AVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNK 300

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 301 QDTQRYEIALWKKVVYPFTVLVMMALALPFA--YLHARAGAVGLKVFGGIMLGLSFQLVN 358

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +   H    N +      +       + L +I  ++ +
Sbjct: 359 NLFSHVGLLNTWPAIFTAIVP-GALYLALALISLRWVE 395


>gi|171463872|ref|YP_001797985.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193410|gb|ACB44371.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 386

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 128/380 (33%), Gaps = 37/380 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +E Y+ + I  +F      +V +     IL  + LV   T +L + L  +    P+ + 
Sbjct: 8   IYERYLAKQIYAAFGFILFALVALFLFFDILSELGLV-QGTYTLPLALLHALLKAPSRIS 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  V   +   +E  I+   G      +  +  ++I L     I    I 
Sbjct: 67  EIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLIALTKISIPLIALTLIMSEWIG 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----------LDDDL-YIKISKYNPNNTL 170
           P   +   Q+  KA  +   S     ++ +           +   + Y+ + K + +N +
Sbjct: 127 PYTEAKSDQIRMKAMGSAYSSQFRTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVDKDNEI 186

Query: 171 QGIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKF 223
           + I + +  DT     I  A SG  D      +LND    R        P++   S   F
Sbjct: 187 RNIRMYEFDDTYHLLSIRSAVSGQFDETG-VWVLNDVTETRFKETKQSDPLNPVFSAQTF 245

Query: 224 KSYTLQTESANSSTI-------VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
               +  ES  +  I         K +  +L   ++    N     +    +   F K++
Sbjct: 246 TRPIVTLESEVTPQILSVLLISPEKMSIMSLGRFISHLREN----KQDAHRHSIAFWKKV 301

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +   +++  A  +             I L +SF +F      +  +   P  I
Sbjct: 302 VYPFTIFVMLTLALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGLLGSWPALI 361

Query: 337 -----PILYLFLFCISSIFL 351
                P+LY  L      ++
Sbjct: 362 TALTPPLLYFLLALAGLRWV 381


>gi|296274436|ref|YP_003657067.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296098610|gb|ADG94560.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 339

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 93/207 (44%), Gaps = 4/207 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+L     +F    L + FI  +I +++  ++ S  T ++  L  +  Y +P ++ 
Sbjct: 2   KLKQYLLSQFSNTFFPIFLVLFFITSIIFLVRIASITSVITLNIFELGTLYAYNLPNIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL+++ + G +   ++K  L +  L+S+ L I    + 
Sbjct: 62  YTMPISFFVAMVITLSKLSSEYELIVVTSFGLNPSNILKVFLPITFLISLSLLILSIGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK +   +Q+  +         ++ + F +   D  I ISK + +   + + +  + +  
Sbjct: 122 PKTKYLSQQMINQKTKE-ANFNIKASEFGQKFGDWLIYISKKD-DKLYEEVKLFKTENKG 179

Query: 183 THKIYYAQSGSIDLDRQAI--ILNDGE 207
           T +   A++  ++ D   +  IL DG+
Sbjct: 180 TDQFIIAKNARLNNDAGNLSFILKDGK 206


>gi|296137010|ref|YP_003644252.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
 gi|295797132|gb|ADG31922.1| permease YjgP/YjgQ family protein [Thiomonas intermedia K12]
          Length = 365

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 128/360 (35%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   ++L  +  +  +  L  + + + I +L  ++ +     SL+  L      +P+ 
Sbjct: 1   MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGKPGFSLSGTLLHVALSMPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L S+  ++E  I+  +G S    +  +L LA  L + LF+    
Sbjct: 61  AYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----YIKISKYNPNNTLQGIFIV 176
           + P     +         +   + L   ++ R D D      + I   N    L  I I 
Sbjct: 121 LAPAA-GQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHIY 179

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESAN 234
             +   Q     +A SG  +      +L +         +   + +++  SY  +T  + 
Sbjct: 180 VLNAQAQIAAELHAPSGQYEGGGT-WMLQNVTRTELPQQTGAALKVIQLPSYRWRTSLSP 238

Query: 235 SS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           S   ++L + D+  +  L     +     +  E Y  +  K+L      V+  L+++  A
Sbjct: 239 SVLGVLLLSPDKMSAIDLWRYIQHLRANHQAAERYEIQLWKKLFYPFSAVVMLLLALPFA 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                 +         I L I+F +    FS +       P     + + LF    + + 
Sbjct: 299 YLHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIVF 358


>gi|323144744|ref|ZP_08079321.1| lipopolysaccharide export system permease protein LptG
           [Succinatimonas hippei YIT 12066]
 gi|322415495|gb|EFY06252.1| lipopolysaccharide export system permease protein LptG
           [Succinatimonas hippei YIT 12066]
          Length = 355

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 123/356 (34%), Gaps = 7/356 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI + +  + L+    +  +  +I  + ++  +   +     L+      +P ++
Sbjct: 4   GILDRYIGKNVFFTILLVTFCLTLLTTLITFVDQMRYIGRGSVDFLFLVSHVALEVPGIV 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++ R +EL+++ + G SR  ++   L   I L + +      +
Sbjct: 64  VLFFPVAVLLGGVIALGNLARTSELIVMQSIGISRTGIVLSALKTVIPLILVIVCLGEFV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P+     +     A      S   + L+ R +   +I I     + +L  I   +    
Sbjct: 124 VPRVEQYAENRLNFASSNGNLSVTNDGLWLR-EGHSFIGIRYTMSDGSLLDIVRYEVEGK 182

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                  A+SG     +   ++ D      +      + +  + ++L         + +K
Sbjct: 183 NLKAFSRAKSGVYSDGK--WVMRDVRKTVFAENKVIRTSLAEEKWSLNLTPERVEVVGVK 240

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALV 299
             +     L++   N      +   +YR E + +    L  ++  L++   V    R++ 
Sbjct: 241 GYNLTARGLID-YINYLEENNQDASSYRLELYNKFMSPLTMIVMLLLAASTVFGPLRSMT 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
              + +  I +          G  + +      P     L   +F + +I LL  K
Sbjct: 300 MGARVLAGIALGFGFYLANQIGAPFAL-VYGIPPILGASLPTLVFMLLAIALLRRK 354


>gi|294341187|emb|CAZ89588.1| putative permease YjgP/YjgQ [Thiomonas sp. 3As]
          Length = 365

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 128/360 (35%), Gaps = 10/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   ++L  +  +  +  L  + + + I +L  ++ +     SL+  L      +P+ 
Sbjct: 1   MRTVRRFLLLHVLSAVGLVTLAFLALLFFIDMLNDLSNLGKPGFSLSGTLLHVALSMPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              V P    +     L S+  ++E  I+  +G S    +  +L LA  L + LF+    
Sbjct: 61  AYEVLPIATLVGGVFALASLAASSEFTILRISGLSPRAALGLLLQLAAALVVTLFLLGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL----YIKISKYNPNNTLQGIFIV 176
           + P     +         +   + L   ++ R D D      + I   N    L  I I 
Sbjct: 121 LAPAA-GQLSARLQAGGGSGIGTQLASGVWLRNDSDRSGNQTVNIKAINTRGDLTDIHIY 179

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESAN 234
             +   Q     +A SG  +      +L++         +   + + +  SY  +T  + 
Sbjct: 180 VLNAQAQIAAELHAPSGQYEGGGT-WMLHNVTRTELPQQTGAALKVTQLPSYRWRTSLSP 238

Query: 235 SS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           S   ++L + D+  +  L     +     +  E Y  +  K+L      V+  L+++  A
Sbjct: 239 SVLGVLLLSPDKMSAIDLWRYIQHLRANHQAAERYEIQLWKKLFYPFSAVVMLLLALPFA 298

Query: 294 DKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
                 +         I L I+F +    FS +       P     + + LF    + + 
Sbjct: 299 YLHTRSKGVSGKVLAGIVLGIAFILLNTLFSSLGILGTWPPAITAAMPMLLFGGLGLIVF 358


>gi|289678194|ref|ZP_06499084.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 284

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 99/272 (36%), Gaps = 31/272 (11%)

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR 152
           G S+  L+   +  A L+ + +      + P+  +    L  +      F  L    F  
Sbjct: 1   GRSQQRLLAITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQA 60

Query: 153 LDDDLYI-KISKYNPNNT-LQGIFI------VDSRDTQTHKIYYAQSGSIDLDRQA---I 201
           L D   I    + + + + L G+FI       D        +  A+ G  ++       +
Sbjct: 61  LRDGTRITYTKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGHQEVRPNGSRFL 120

Query: 202 ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL-NPNPNNPNY 260
           IL +G  +  +P + D  ++K+ +Y         S  +        S L+ NP P +   
Sbjct: 121 ILENGYRYDGNPGAADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGNPAPRS--- 177

Query: 261 RPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
                    +E   R++  L   I  L++I     R   RQ + +      L  +  ++ 
Sbjct: 178 --------VAELQWRISLPLSVFIVTLMAIP--LSRVNPRQGRYLK-----LLPAILLYM 222

Query: 321 GFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
            +  I+  +  +     + L L ++ + +I+L
Sbjct: 223 SYLAILISVRSSLEKGKLPLSLGMWWVHAIYL 254


>gi|294673581|ref|YP_003574197.1| hypothetical protein PRU_0844 [Prevotella ruminicola 23]
 gi|294471872|gb|ADE81261.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 393

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 123/361 (34%), Gaps = 16/361 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI+     +++ S + I+ I+ V  + + +   S+    L  I+       +P 
Sbjct: 33  LKRLDRYIIAKFIGTYIFSIILIISISIVFDVNENLAKFSTYNAPLKAIVFDYYANFVPY 92

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +  A L++   F    
Sbjct: 93  FANLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLLRPYMISAALIAAVNFYLGG 152

Query: 120 IIEPKCRSTIKQLSAKAQL---ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + PK         AK +     L+ S ++      +   +   + +Y+        F +
Sbjct: 153 YVIPKGNQVKMDFEAKYKNKERNLSASNVQ----LMVQPGVIAYLQQYDDVTKTGYGFSL 208

Query: 177 DSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           D  + +    +   S     SI   R        ++     + ++I         +Q E 
Sbjct: 209 DKFENKKLVSHMTASVIRYDSISDSRYHWKAQSYKIRTLKGLREEIESGAVIDTLIQMEP 268

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      +      + L +            +  Y  E+HKR+       I  +I +  
Sbjct: 269 MDLVFSKGQQETLTSTELSDYISKQVERGSVNVVQYEVEYHKRIATSFASFILTMIGVSL 328

Query: 293 ADKRALVRQRKKIHPIFISLSISFG-VFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + ++   R+      + I L++SFG +          I  +   +   ++       I  
Sbjct: 329 SSRK---RKGGMGMYLGIGLALSFGYILLQTISATFAINADTPALLAAWIPNLLYVIIAY 385

Query: 352 L 352
            
Sbjct: 386 F 386


>gi|288926740|ref|ZP_06420651.1| membrane protein [Prevotella buccae D17]
 gi|288336470|gb|EFC74845.1| membrane protein [Prevotella buccae D17]
          Length = 367

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 126/365 (34%), Gaps = 11/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    ++  S   I+ IA V    + ++  +        I+       IP  
Sbjct: 8   KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIVFDYYANFIPYY 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L++   +     
Sbjct: 68  SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 127

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
             P   + I+Q         T +   +N+  ++D  +   I  Y+ N     G  +    
Sbjct: 128 EIPHG-TVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFE 186

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D +      A     D     +    + + +  +   + + I+    K   +  E  +  
Sbjct: 187 DKKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLV 246

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +        L        +     +  Y+ E+HKR+       I  +I +  + ++
Sbjct: 247 YSKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSLSSRK 306

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIK 355
              R+      + + L++SFG +     +      N    P+L  +    + +I    + 
Sbjct: 307 ---RKGGMGLYLGLGLALSFG-YIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFLY 362

Query: 356 KKYTK 360
           +K  K
Sbjct: 363 RKAPK 367


>gi|238921309|ref|YP_002934824.1| hypothetical protein NT01EI_3453 [Edwardsiella ictaluri 93-146]
 gi|238870878|gb|ACR70589.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 356

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 120/362 (33%), Gaps = 14/362 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I  + +M+   +V ++ +I+ + ++  V     S+      +   +P  +
Sbjct: 3   GVLDRYIGRTIFNTIMMTLFMLVSLSGIIKFVDQLRKVGQGDYSVAGAGLFTLLSVPKDI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  + + +EL+++   G +R+ +   V+  AI L +        +
Sbjct: 63  EIFFPMAALLGALLGLGMLAQRSELVVMQAAGFTRMQVASAVMKTAIPLVLLTMAIGEWV 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-D 180
            P+     +   A+     +    +  L+ + D + ++ IS+   + TL G+ I      
Sbjct: 123 APQGDQAARNYRAQQMYGGSLLSTQGGLWAK-DGNQFVYISQVVNDRTLGGVSIYTLDAQ 181

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS-----YTLQTESANS 235
            +   + YA S + D  +  +         +     D  ++         +         
Sbjct: 182 RKLTSLRYAASATFDGKQWKL------AQVEESNLSDPKMITGSRTLSGVWKTNLTPDKL 235

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             + +  +  ++S L            +    Y+     ++   L   +  L+++     
Sbjct: 236 GVVAVSPDSLSISGLYY-YVKYLKQSGQESSRYQLNLWIKVFAPLSVAVMMLMALSFIFG 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                         I     F V       +  +   P  I  +      +     L+++
Sbjct: 295 PLRSVPMGVRVLTGICFGFVFYVLDQIFGPMSLVYNVPPVIGAVLPSALFLGLSVYLLLR 354

Query: 356 KK 357
           ++
Sbjct: 355 RR 356


>gi|71275899|ref|ZP_00652182.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|71899263|ref|ZP_00681425.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71163276|gb|EAO12995.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|71730996|gb|EAO33065.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 408

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 102/281 (36%), Gaps = 17/281 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SF+ + + ++ +     ++  +  ++       +LL   G    + 
Sbjct: 48  MPKLDRYLLSDFTQSFIATLIVLMLVGVGGVLVDILGSIADGHFPAKLLLSQLGLRFISY 107

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I + G     ++  +L L + + + + +    
Sbjct: 108 LPLLLPLALMLGLLLSLGRLYRDSEMAVITSIGVGPGRMLPSILGLVLPVVVLIGVCSLW 167

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
           + P    T   L  +A  ++  + LE   F  + D   + +S  + + T L  +F+   +
Sbjct: 168 LAPWANRTANDLLEQANRSIIMAGLEAGTFTPMPDGGVVYLSSLSSDGTKLNAVFMQSQK 227

Query: 180 DTQTHKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESAN 234
           D     +  A+ G +       + + L DG+           +  ++ F          +
Sbjct: 228 D-DRIAVVTAKRGEMYVQGDKGRYLRLEDGQRVDGPADGAALNYRVLTFARNDALLPELS 286

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                   +      L+           +     +++ H R
Sbjct: 287 VVYDSNHPDILPTFNLI----------GDPRREAQAQLHAR 317


>gi|91212393|ref|YP_542379.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218560054|ref|YP_002392967.1| hypothetical protein ECS88_3361 [Escherichia coli S88]
 gi|237706274|ref|ZP_04536755.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073967|gb|ABE08848.1| hypothetical protein UTI89_C3401 [Escherichia coli UTI89]
 gi|218366823|emb|CAR04593.1| conserved hypothetical protein; putative membrane protein
           [Escherichia coli S88]
 gi|226899314|gb|EEH85573.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 386

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 130/365 (35%), Gaps = 24/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 28  MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 87

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 88  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 147

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 148 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 207

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTES 232
                   YA+S +I+ D+   IL+     +     + +  +        F S  L+  S
Sbjct: 208 DLSLESYIYARSATIEDDKT-WILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 266

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +T  ++  +  + +L            +    Y     ++L Q +  +   L+++  
Sbjct: 267 MPGNTFSVRQLNHYIHYL--------QDTGQPSSEYHLALWEKLGQPILTLAMILLAVPF 318

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCIS 347
               ++ R       + + + +    +  +  +++         P+  L     F+    
Sbjct: 319 --TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVAL 376

Query: 348 SIFLL 352
           S+   
Sbjct: 377 SLVYW 381


>gi|257462588|ref|ZP_05626998.1| hypothetical protein FuD12_01969 [Fusobacterium sp. D12]
          Length = 270

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 94/265 (35%), Gaps = 4/265 (1%)

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
           +++ G     ++KP+L+L      F+   +  I P+    ++ LS+K         L+E 
Sbjct: 1   MNSIGMDIRAILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKER 60

Query: 149 LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
            F    ++  + I K   +   +GI I ++    T  +      +   D  +I+L     
Sbjct: 61  TFMNNLENYSLYIDKVGRDKHAKGILIFENDKKSTFPVVLVGHEAYWRD-SSIVLEKANF 119

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                         F+   ++ ++   S + +K  +  +  +            E    Y
Sbjct: 120 ISFDEKGVRKLTGSFEDKRVELQAY-FSDLKIKVKETEMMSIATLLQEMKGKTKEEKLIY 178

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
           + E H++L      V+  ++ +         R  KK   +   L+I F +      I+  
Sbjct: 179 KVEIHRKLALPFSSVMLSMLGV--FLSIGHQRSGKKAGILVGILTIFFYISLLNIGIVLA 236

Query: 329 IEQNPYYIPILYLFLFCISSIFLLM 353
                  +  ++L    ++++   +
Sbjct: 237 NVGKIPILLGVWLPNLLLAALTYRL 261


>gi|117625285|ref|YP_854457.1| putative permease [Escherichia coli APEC O1]
 gi|115514409|gb|ABJ02484.1| putative permease [Escherichia coli APEC O1]
 gi|294491111|gb|ADE89867.1| putative permease, YjgP/YjgQ family [Escherichia coli IHE3034]
 gi|307625417|gb|ADN69721.1| hypothetical protein UM146_01460 [Escherichia coli UM146]
 gi|315288788|gb|EFU48186.1| conserved hypothetical protein [Escherichia coli MS 110-3]
 gi|323951498|gb|EGB47373.1| YjgP/YjgQ permease [Escherichia coli H252]
 gi|323957870|gb|EGB53584.1| YjgP/YjgQ permease [Escherichia coli H263]
          Length = 359

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 130/365 (35%), Gaps = 24/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTES 232
                   YA+S +I+ D+   IL+     +     + +  +        F S  L+  S
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +T  ++  +  + +L            +    Y     ++L Q +  +   L+++  
Sbjct: 240 MPGNTFSVRQLNHYIHYL--------QDTGQPSSEYHLALWEKLGQPILTLAMILLAVPF 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCIS 347
               ++ R       + + + +    +  +  +++         P+  L     F+    
Sbjct: 292 --TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVAL 349

Query: 348 SIFLL 352
           S+   
Sbjct: 350 SLVYW 354


>gi|29346244|ref|NP_809747.1| hypothetical protein BT_0834 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253568323|ref|ZP_04845734.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385619|ref|ZP_06995177.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|29338139|gb|AAO75941.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842396|gb|EES70476.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298261760|gb|EFI04626.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 365

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 125/351 (35%), Gaps = 18/351 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPT 59
           +K  + YI++    +++ +   I+ IA V    ++++ +       + I+ +     IP 
Sbjct: 7   IKRLDWYIIKKFLGTYVFAIALIISIAVVFDFNEKMDKLMEHEAPWDKIIFEYYMNFIPY 66

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ + +TG S   +++P +  A +++   F+  +
Sbjct: 67  FSNLFSPLFVFIAVIFFTSKLAENSEIIAMFSTGMSFKRMMRPYMISAAIIAAATFMMSS 126

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            I PK    R   +    K +   +   ++      +D  +   I  YN        F +
Sbjct: 127 FIIPKGSVTRLNFEDKYIKPKKVNSVRNVQ----LEVDSGVIAYIDNYNDGMKTGNRFSL 182

Query: 177 DS-RDTQTHKIYYAQSGSIDLDR-QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           D   D +      A+  + D        ++D  V     + +   I K            
Sbjct: 183 DKFVDKKLVSHLTARRITYDTTTVNKWTIHDYMVRELDGLKEK--ITKGDRIDSIINMDP 240

Query: 235 SSTIVLKANDQNLS--FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           S  +++K   + L+   L              ++ +  E+HKR+       I  +I +  
Sbjct: 241 SDFLIMKNQQEMLTSPELSEYIEKQKRRGFANIKEFEIEYHKRIAMSFASFILTIIGVS- 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
              R           I + LS S   +  F  I      N    P + +++
Sbjct: 300 LSSRKTKGGMGLHLGIGLGLSFS---YILFQTITSTFAINGNVPPAIAVWI 347


>gi|88703587|ref|ZP_01101303.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
 gi|88702301|gb|EAQ99404.1| Predicted permease YjgP/YjgQ family protein [Congregibacter
           litoralis KT71]
          Length = 352

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES--LNILLKISGYLIP 58
           M+    Y+ R +  S L+  L IV    +  +   I+   S + S     + +     +P
Sbjct: 1   MRKLNRYVARTVWLSILLVLLVIVG---IDGLSAFIDESDSRSASYGFAEIGRYVMLTMP 57

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             +    PF   +     L  +   +EL+++   G S   L   VL  A+++++F F+  
Sbjct: 58  RRVYEFIPFAALIGALIGLGQLASTSELVVMRAAGISNGRLAWMVLKQALVIAVFGFLLG 117

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD- 177
             I PK     +   A A+ A      E+ ++ R D  ++  +    P+N + G+   + 
Sbjct: 118 EYIAPKAEQQAQSGRAIARYAGRQVDTEQGIWRR-DGAVFFHVQAIAPDNEVFGVTAYEF 176

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI 201
             D    +  +A SG  D +   +
Sbjct: 177 EEDGWMQRALFADSGRYDGEGWRL 200


>gi|187929752|ref|YP_001900239.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|309781532|ref|ZP_07676268.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|187726642|gb|ACD27807.1| permease YjgP/YjgQ family protein [Ralstonia pickettii 12J]
 gi|308919945|gb|EFP65606.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 397

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 121/398 (30%), Gaps = 43/398 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 3   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLGELGSVVGRYTTLVAFFHVM-LQAPTR 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 62  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYLFGEF 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ +
Sbjct: 122 IGPKAEEYAQKVRLEALGATVSAGFRSGVWVKDRGPAKPDGTGGEVTRFVNVGALQPDQS 181

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK----------------- 211
           ++G+ I +   D +   I  A         Q   LND    R                  
Sbjct: 182 IKGLRIYEFDSDYRLSSIRVADQARYQ-GHQNWQLNDVTETRFVEFPRKPGTVAPQDTVQ 240

Query: 212 -SPISKDISIMKFKSYTLQTE--------SANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             P + D     F+    +          +    ++++   D+  +  L     +     
Sbjct: 241 AVPGAPDALAPDFRGEQTKLPHQEMRSELTPQILSVLMVTPDRMATLDLFQYIRHLRDNK 300

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 301 QDTQRYEIALWKKVVYPFTVLVMMALALPFA--YLHARAGAVGLKVFGGIMLGLSFQLVN 358

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTK 360
           +   H    N +      +       + L ++  ++ +
Sbjct: 359 NLFSHVGLLNTWPAIFTAIVP-GALYLALALVSLRWVE 395


>gi|301058948|ref|ZP_07199917.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
 gi|300446944|gb|EFK10740.1| permease, YjgP/YjgQ family [delta proteobacterium NaphS2]
          Length = 355

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 17/362 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++YI     + FL+  L +  +  +I+ L +++ V      +   L +    +P  
Sbjct: 1   MKLLDIYIGSRFLKCFLLVILILAVLFSLIEFLSQLDDVGKGMYRVENALLLVMLTLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  +  + ELL + N G S   +  PV    +L+ +   I    
Sbjct: 61  LLDLLPISALLGGVISLGLLADHGELLAMQNAGISAPRVCAPVFATLMLVIMTSGIMAET 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P      ++   +A      +      F+    + YI + K        G+ I +   
Sbjct: 121 IIPDMEQMARKSRTRALYGAGVNVTRHG-FWARRQNAYIHVHKILDEGVAAGVDIFEFDP 179

Query: 181 TQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
               K +  A S  I L  Q   L    + +     + ++I    S+TL+   +     +
Sbjct: 180 RGRLKTFTHALSARI-LGHQQWSLT--GIRQTVFKDRGVAIKGAASWTLEPFLSPDQVAL 236

Query: 240 LKANDQNLSFLLNPN----PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           L   + +   L  P+            +  + YR    ++L   L   +  L S+     
Sbjct: 237 L---ELSPYCLSTPDLIGYIKALEDGGQNADPYRLALWRKLGVPLTTGVMVLFSVTFVLG 293

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHK---IEQNPYYIPILYLFLFCISSIFLL 352
               R+ +    I ++  I   +++    I+H    +  NP    +L +      +++ L
Sbjct: 294 A--NRKVRAGSRITMASLIGLLLYFADQLIMHTGLLLNLNPPITAMLPVVFISGLAVWRL 351

Query: 353 MI 354
            +
Sbjct: 352 RL 353


>gi|325971215|ref|YP_004247406.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
 gi|324026453|gb|ADY13212.1| permease YjgP/YjgQ family protein [Spirochaeta sp. Buddy]
          Length = 361

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 116/362 (32%), Gaps = 19/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI+R I     ++ +    +   + +   ++   +   S  ++ K++    P  
Sbjct: 1   MKVIDRYIIRSIASVAFVTLMLCTLMLLSVDLFANLDSYLTRKVSYLMIAKLTLLYTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +            +  L+ +  N EL+ +  +G S   ++ P+L   + LS F F     
Sbjct: 61  VLFALGPALLFSASFFLSQLQANNELICLMGSGLSYRRIVIPILMFGLALSTFQFGFSEY 120

Query: 121 I-EPKCRST--IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY-NPNNTLQGIFIV 176
           +  P  +     +      +       +        +    +   +Y +    L  + +V
Sbjct: 121 VHIPLSKEREVQEDSLFGLRSTYDNRNI---TLRDPEGAYVVHARQYSDREKRLAQVMLV 177

Query: 177 DSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-----SIMKFKSYTLQT 230
              +  +      A     + ++    L      +       +      ++   S+TLQ 
Sbjct: 178 LIDEKGSLKSRIDAPWAYWEEEKGIWRLEQARNQQVDSSLLVLHQTEEQVLYVDSFTLQP 237

Query: 231 ESANSSTIVLKANDQNL--SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
               + +  +K  +      +L      +PN  P+L   +     KRL   L P++   I
Sbjct: 238 SFFRNVSNDIKTMELRTAYHYLQRIAELDPNRYPQLATDFA----KRLLDSLNPLVMLFI 293

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +   + K         I        I + V      +  +    P +   + + +    +
Sbjct: 294 ACAISYKYKKNVLLFSIITSLGIAVIYYVVQMVTLIMAKQAVIGPLWGMAIPMIVIVCIA 353

Query: 349 IF 350
           + 
Sbjct: 354 LA 355


>gi|71899265|ref|ZP_00681427.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71730998|gb|EAO33067.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 385

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 129/377 (34%), Gaps = 29/377 (7%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 18  MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 77

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 78  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMAL 137

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQ 171
           +   + P  ++    L A A+     +    + F+  + ++++        + +    + 
Sbjct: 138 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIM- 196

Query: 172 GIFIVDSR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + + D R              ++  ++  +   IL   +V R +   + +    F S  
Sbjct: 197 -LILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQ--QVQRDTFSERGVQRETFHSLP 253

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVI 284
            ++    ++     A  +NLS  ++    +  YR         +  ++  R   W +P+ 
Sbjct: 254 WRSRLDPAALAAGLAKPRNLS--VHELVQSIEYRRRNHLDARDFEGQYWSR---WFYPIN 308

Query: 285 FGLISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYL 341
              + + A      L+R        F+ +  +   FW       +I       Y     L
Sbjct: 309 VLALCLAAIPFSFGLLRSGGMGKRTFLGILFALS-FWMLQMFFERIASVLKLNYQIFYLL 367

Query: 342 FLFCISSIFLLMIKKKY 358
               +      + ++++
Sbjct: 368 PPMVMLCGSYWLFRRQH 384


>gi|282860071|ref|ZP_06269152.1| putative membrane protein [Prevotella bivia JCVIHMP010]
 gi|282587159|gb|EFB92383.1| putative membrane protein [Prevotella bivia JCVIHMP010]
          Length = 405

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 110/302 (36%), Gaps = 6/302 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           + + + YI++    +++ + L I+ IA V    + ++  +        I+       IP 
Sbjct: 45  IGTLDWYIIKKFIGTYIFAILLIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPY 104

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +   G S   L++P +   IL+S+  F   +
Sbjct: 105 YSNLFSPLFVFIAVIFFTSKLAGNSEVIAMLAAGVSFKRLMRPYMISCILISVLTFYLNS 164

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIFIV 176
            + P   + I+Q           +   EN+  ++  +    I  Y+          +   
Sbjct: 165 FVIPHG-TVIRQNFESLYRNNKKNTSAENVQLQVAKNTVAYIQHYDDHYKRGYGFSLVKF 223

Query: 177 DSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +++   +H      Q  ++   +    +++ ++     + + I+    K   L  E  + 
Sbjct: 224 ENKKIVSHMTAMEIQYDTVADTKYHWKVSNYKIRILRGLKEHITTGTEKDTMLLMEPTDL 283

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                +        LLN      +     +  Y  EFHKR+       I  +I +  + +
Sbjct: 284 VYSKGQQETFTSPELLNYISKQTSRGASNVVQYEIEFHKRIAMSFSAFILTIIGLSLSAR 343

Query: 296 RA 297
           + 
Sbjct: 344 KR 345


>gi|325267812|ref|ZP_08134462.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
 gi|324980693|gb|EGC16355.1| YjgP/YjgQ family permease [Kingella denitrificans ATCC 33394]
          Length = 353

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 124/361 (34%), Gaps = 11/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPT 59
           MK    Y+   I R  +MS   ++ +  +   +  ++  +     +    ++ +    P 
Sbjct: 1   MKLLSRYL---IIRLTVMSAYALLALLALYNFIDLLSEKTGIGNYTFWHAVQFTLLQTPA 57

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              ++ P    +     L+ ++ N+EL ++  +G      I  ++  + + ++   +   
Sbjct: 58  RAYLLMPLATLIGGLLALSQLSSNSELAVMKTSGWHISRFIGTIVQFSFIFAVITVLLGE 117

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDS 178
            I P+  S    + + A+     S     ++ +   D  + I    P+ TL  I I   +
Sbjct: 118 WIAPQLSSYADNMKSTARSGQLSST-RNGVWIK-QPDSMVYIGSMLPDKTLLDISIWHYT 175

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +  +A+   +    Q   L + +  + +     +     + + + T +     +
Sbjct: 176 PQFRLTEAIHAEKAVMR--DQTWQLQNVQSSKITEERVIVQKQPARDWHMNTTNQLMDVL 233

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD-KRA 297
           ++K    + S L            +    Y   +  +L   +  ++  L+++        
Sbjct: 234 LVKPEQMSFSAL-TQYIGYLKKNNQQTLAYDVAWWNKLVYPVATMVMALVALAFTPVSGR 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                 K+        + F     F +         +   +L   LF   ++FL+  ++K
Sbjct: 293 NHNLGLKLFGGIGLGLLFFFTGRLFGFSAQLYGVPAFLSAVLPTALFACLAVFLIYRQEK 352

Query: 358 Y 358
            
Sbjct: 353 R 353


>gi|17547136|ref|NP_520538.1| hypothetical protein RSc2417 [Ralstonia solanacearum GMI1000]
 gi|17429438|emb|CAD16124.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 401

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 94/284 (33%), Gaps = 29/284 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 7   MQVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   S     ++ +       D        ++ +    PN T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSSGFRSGVWVKDRGPARPDGSGGEVTRFVNVGTLQPNQT 185

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +QG+ I +   + +   I  AQ               G  H +     +   ++F  +  
Sbjct: 186 IQGLRIYEFDANYRLSSIRVAQQARY----------QGHQHWELNDVTETRFIEFPRHAG 235

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
                +S   V  A D      L P+      R    +  RSE 
Sbjct: 236 AATPQDSKQAVPGAPD-----ALAPDFRGEQTRL-PKQDMRSEL 273


>gi|302879721|ref|YP_003848285.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
 gi|302582510|gb|ADL56521.1| permease YjgP/YjgQ family protein [Gallionella capsiferriformans
           ES-2]
          Length = 358

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 124/369 (33%), Gaps = 22/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R I  S  +    ++ +   +  + ++  +     SL  ++      IP  
Sbjct: 1   MNLLTRYLAREIYASIALVFAALIMLFAFLDFIGQLGTMGYGQYSLGYVVLFVLLTIPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + T   L  M   +EL I   +G S   ++  +  +A+ + +  FI   +
Sbjct: 61  IYELFPVAVLIGTIVALVQMAARSELTIYRASGASTGQMLGALSKIAVPMILLSFICGEL 120

Query: 121 IEPKCRSTIKQLSAKA-QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I P      ++L  KA    ++       ++ + DD  ++ +    P+ +L  I I    
Sbjct: 121 IAPPSERLAQKLRLKALNTQVSLQAFRSGVWVK-DDASFVNVRSVMPDTSLSDIDIYTFD 179

Query: 180 DT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL------QTES 232
            +   + +  A+  S         L  G       +    +     + ++         +
Sbjct: 180 KSFHMNSVIRAKRASY--------LEPGVWQLHDVLETSFAARGVSTKSMPVREWQSALT 231

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
               +++L   +Q  +  L    ++     +    Y      +L      ++  ++++  
Sbjct: 232 PGILSVMLVVPEQMSALDLYKYASHLKENKQQSARYEIAMWNKLVYPFALLVMMVLALPF 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN---PYYIPILYLFLFCISSI 349
           A  +   R       +F+ + +     +    +      N   P +       +F +   
Sbjct: 292 ASYQR--RAGGVSILVFMGIVLGLVFHFAGRLVGSLGSLNDWQPLFSATAMTGVFLLIGA 349

Query: 350 FLLMIKKKY 358
           F+L   ++ 
Sbjct: 350 FMLWRVERR 358


>gi|191169423|ref|ZP_03031162.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
 gi|309794090|ref|ZP_07688515.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|190900537|gb|EDV60347.1| putative permease, YjgP/YjgQ family [Escherichia coli B7A]
 gi|308122497|gb|EFO59759.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 359

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 130/369 (35%), Gaps = 21/369 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I + G S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSMGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I  D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 181 DLSLESYIYARSATIKDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S   ++  ++  +  +++L            +    YR    ++L   +  +   L+++ 
Sbjct: 239 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPILTLAMILLAVP 290

Query: 292 AADK--RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+     +    + + L          +  +      P     L +     + I
Sbjct: 291 FTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVAALGLPMAFVLAALI 350

Query: 350 FLLMIKKKY 358
            + +  +++
Sbjct: 351 LVYLFDRQH 359


>gi|254418566|ref|ZP_05032290.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
 gi|196184743|gb|EDX79719.1| putative permease, YjgP/YjgQ family [Brevundimonas sp. BAL3]
          Length = 378

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 133/368 (36%), Gaps = 25/368 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPT 59
           +   E Y+L    RS  ++   I  +  +I  ++    V S    S   +L +     P+
Sbjct: 16  LGRIERYVLIQQLRSLGVALAVISALVMLIDFVEVSRGVGSDQDLSALRILGLVALKSPS 75

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+  + PF F   T      +NR +EL+ +   G S    + P   +A++L +       
Sbjct: 76  VIVQLLPFVFLFGTLAAYIGLNRRSELVAMRAAGVSAWRFVLPAAGMALVLGVLTVTVLG 135

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYN-PNNTLQGI-- 173
            +        ++  A+       +   + ++ R  DD   + I+  + +  N  L  +  
Sbjct: 136 PLASAGDGLWQRERARISGTAPGASSNDAIWLREGDDQRQMIIRAGRQDRANARLLDVTF 195

Query: 174 FIVDSR---DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           FI  +    +    +   A+S ++   R  +             S     + + S  L +
Sbjct: 196 FIYTTDAEGNRDFSERIDARSAALSAGRWRLT-------DAVGASIGQRAVTYSSLDLLS 248

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL-FPVIFGLIS 289
             A+       A  Q+  F   PN      R E      + +  R  Q L  P++F  +S
Sbjct: 249 SLADEEAFERFARPQSTPFWSLPNQ---IKRIEDAGFASTAYRLRFQQLLVTPLVFAAMS 305

Query: 290 -IVAADKRALVRQR--KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFC 345
            + AA    L+R     K+    + L  +F     FS  +   E  P ++   L   L  
Sbjct: 306 ILAAAFSLRLMRLGDLAKMSVAAVVLGFAFFFLNQFSSAMGSAEVVPPFVAAWLPPILTA 365

Query: 346 ISSIFLLM 353
           +++  LL 
Sbjct: 366 LAAFTLLF 373


>gi|85716330|ref|ZP_01047303.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
 gi|85696846|gb|EAQ34731.1| permease YjgP/YjgQ [Nitrobacter sp. Nb-311A]
          Length = 365

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 128/365 (35%), Gaps = 24/365 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y         + +    V I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 6   NTLGRYFAGRFL---VAALGVFVSIFLLLVLVDYIEMVRRTSGLASASALVVAETSLFRV 62

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  +TPFC  +       +++R  EL++    G S    I P L  AI+L       
Sbjct: 63  PQLLEKLTPFCVLIGAMTCYLALSRQLELVVARAAGVSAWQFISPALACAIVLGALATTV 122

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEE--NLFFR--LDDDLYIKISKYNPNN--TLQ 171
            N +    R   K++ A+    ++   L++    +     DD   I  +  +      L 
Sbjct: 123 YNPLSANLRELSKRMEAELFGGVSGGGLQDASGFWINQVTDDGQAIINAARSEQQGVRLT 182

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ +   +  ++  +   A+  +++  R    L  G   R +  +  +    F   +   
Sbjct: 183 GLTVFRFNPHSRFEERIEAREAALEDGRW---LFKGVR-RFTLDNPPVEQETFV-LSTSL 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
             A            +   L     ++ +        YR ++HK + Q    ++  ++ +
Sbjct: 238 TPAQVQNSFSTPETVSFWQLPGYIKSSESSGFATAG-YRLQYHKLIAQPF--LLAAMVML 294

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSI 349
            A+      R       +   +   F ++   S +   + +     PI   +   C+  +
Sbjct: 295 AASVSLRFFRFGGVQKMVLSGVGSGFLLYV-LSKVTEDLSKAELMNPIAAAWLPVCVGGL 353

Query: 350 FLLMI 354
              ++
Sbjct: 354 TGFLV 358


>gi|209519257|ref|ZP_03268059.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
 gi|209500337|gb|EEA00391.1| permease YjgP/YjgQ family protein [Burkholderia sp. H160]
          Length = 382

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 132/379 (34%), Gaps = 28/379 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGIPLVIVTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   +  +  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSTNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  AQSG        ++  + D ++   +P               
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGRYQPPGHWLLTGVTDTQLLDVAPAPGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           + +    Y+L++E +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 TQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI- 336
                 +  ++S+  A                I L +SF +F      I  +   P  + 
Sbjct: 301 YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLT 360

Query: 337 ----PILYLFLFCISSIFL 351
                ++YL L  +   ++
Sbjct: 361 AATPGLVYLVLGLVGLKWV 379


>gi|254251664|ref|ZP_04944982.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
 gi|124894273|gb|EAY68153.1| hypothetical protein BDAG_00856 [Burkholderia dolosa AUO158]
          Length = 382

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/381 (13%), Positives = 118/381 (30%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVATLISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++ +      ++      ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEHVTRFVNVGSPSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQSG  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLRNVRIAQSGRYEP-PGHWLLTGVTETELTPIKPVAGQPADALSPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     ++  L      +     +  + Y     ++
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIVNLFR-YIQHLRENQQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I     L   K
Sbjct: 357 APLTAATPGLIYLALGLFALK 377


>gi|86142618|ref|ZP_01061057.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830650|gb|EAQ49108.1| hypothetical protein MED217_06881 [Leeuwenhoekiella blandensis
           MED217]
          Length = 514

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 17/236 (7%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           +FI  +  +   I  ++     L I++K   Y  P ++ +V P    + +     +   N
Sbjct: 1   MFIFVLQTVWLYIKELAGKDLDLVIIVKFLLYFSPRLVTLVLPLTVLLTSIMTFGNFAEN 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFS 143
            E   + +TG S    ++ +    + L++  F+  N + P        L           
Sbjct: 61  YEFAAMKSTGISLQRAMRSLTVFILGLAVTSFLFANYVIPAAEFESLNLRRNIAQVKPAM 120

Query: 144 YLEENLFFRLDDDLYIKISKY--NPNNTLQGIFIV--DSRDTQTHKIYYAQSGSIDLDRQ 199
            + +  +  + +D  +K++         L+ + I   D      + +  A+ G +     
Sbjct: 121 AITKGQYNTIGEDYVMKVADKQGEKGQFLKDVIIYQKDPSRVGNYTVIKAREGELISAEG 180

Query: 200 ----AIILNDGEVHRKSPISKDISIMK--------FKSYTLQTESANSSTIVLKAN 243
               ++ L DG  +      KD    K        F++YT+  + +    + ++  
Sbjct: 181 DNVLSLKLIDGNYYD-EVEQKDFRKQKREPFVKSYFETYTINIDLSELDNVDMEEK 235



 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 257 NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +   + + L  Y    H++       +I      V A   A++R+     PI I + +  
Sbjct: 333 DNGIKVKTLSKYEIALHEKFVLAFGCIILF---FVGAPLGAIIRKGGLGLPIVIGVVLFL 389

Query: 317 GVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIKKKYT 359
              +   +  +  E  +       +L    +  + + +  +  T
Sbjct: 390 TYHFIGIFAKNSAEDGSVAAWLASWLSTLILFPLGVYLTYRATT 433


>gi|320451335|ref|YP_004203431.1| hypothetical protein TSC_c22800 [Thermus scotoductus SA-01]
 gi|320151504|gb|ADW22882.1| hypothetical membrane spanning protein [Thermus scotoductus SA-01]
          Length = 347

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 110/342 (32%), Gaps = 14/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ + Y+LR +   F +    IV +     + + +  + +       LL    Y  P  
Sbjct: 1   MKTLDRYLLREVLAHFSLGLAVIVLLFLAGAVYEVLAPLVAKGADPYTLLLYLFYRTPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  +      +L+ +  ++EL  +   G  R  ++ P+L L  LL++  F+    
Sbjct: 61  LVRGAPVAYLFALLFLLSRLGEDSELKALLALGIRRERVLLPLLGLGALLALLGFLLGES 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK  +  + L  +  L    + L     F+      + + +   +       I   R 
Sbjct: 121 LVPKALAQGQDLLRRQVLERPRALLTPGTTFQDARGRVVYVGEVARDR------IGKLRI 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               ++  A+ G        + +  G            ++ +F+   L            
Sbjct: 175 LSQEEVVLAEEGRFQGG--VLQVEKGLRVTYEGDRPR-TLTRFQEGELVLRDLTFEPWQN 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
            AN   L  L                   + +++R  +    ++F L     A   A   
Sbjct: 232 PANRMTLKEL-KEEVERLRKSGVKAGLEATTYYRRYAEPAASLVFAL----FATGLAFYL 286

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                    + +++    ++    +   + +     PIL  +
Sbjct: 287 LGGSRSLGLVGVAVLTFFYYATWSVGRIMGEQNALDPILAAW 328


>gi|71275897|ref|ZP_00652180.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|170729352|ref|YP_001774785.1| hypothetical protein Xfasm12_0116 [Xylella fastidiosa M12]
 gi|71163274|gb|EAO12993.1| permease YjgP/YjgQ [Xylella fastidiosa Dixon]
 gi|167964145|gb|ACA11155.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 368

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 129/377 (34%), Gaps = 29/377 (7%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMVIGMGTGLMAL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQ 171
           +   + P  ++    L A A+     +    + F+  + ++++        + +    + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIM- 179

Query: 172 GIFIVDSR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + + D R              ++  ++  +   IL   +V R +   + +    F S  
Sbjct: 180 -LILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQ--QVQRDTFSERGVQRETFHSLP 236

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVI 284
            ++    ++     A  +NLS  ++    +  YR         +  ++  R   W +P+ 
Sbjct: 237 WRSRLDPAALAAGLAKPRNLS--VHELVQSIEYRRRNHLDARDFEGQYWSR---WFYPIN 291

Query: 285 FGLISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYL 341
              + + A      L+R        F+ +  +   FW       +I       Y     L
Sbjct: 292 VLALCLAAIPFSFGLLRSGGMGKRTFLGILFALS-FWMLQMFFERIASVLKLNYQIFYLL 350

Query: 342 FLFCISSIFLLMIKKKY 358
               +      + ++++
Sbjct: 351 PPMVMLCGSYWLFRRQH 367


>gi|86749599|ref|YP_486095.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
 gi|86572627|gb|ABD07184.1| permease YjgP/YjgQ [Rhodopseudomonas palustris HaA2]
          Length = 361

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 113/359 (31%), Gaps = 14/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + +   Y       S L     +  +   +  +  +      + S  ++ + S + +P +
Sbjct: 3   LNTLGRYFAARFVSSALGVFFGLFVLLVFVDYIDLLRRAGGLSVSAFVIAQASFFRVPQL 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PFC  +       +++R  EL+I    G S    I P L+ A+ L +F     N 
Sbjct: 63  LERLLPFCILIGGMTCYLALSRRLELVIARAAGLSAWQFIAPALWSALALGVFASAVFNP 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQGIFI 175
           +    +   KQ+ A+     + S  + N F       +    I  ++       L GI +
Sbjct: 123 MSAYMQERAKQMEAELFGQGSGSLQDANGFWMNQVSPEGQSIINAARSQQQGAVLSGISV 182

Query: 176 V-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                D Q      A+   ++      +L D   +      ++ + +           A 
Sbjct: 183 FRFEPDFQFKDRIEAREAVLEPG--YWLLKDVRKYTLDSAPEEQATL---RLPTALTLAQ 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                      +   L +    + +        YR ++HK L +    ++  ++ + A+ 
Sbjct: 238 VRNSFATPESVSFWQLPSYIKASESSGFATAG-YRLQYHKLLAKPF--LLAAMVMLAASV 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +   +   F ++          +    +         C+  +   +
Sbjct: 295 SLRFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGGLAGFL 353


>gi|115352568|ref|YP_774407.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|172061427|ref|YP_001809079.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
 gi|115282556|gb|ABI88073.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria AMMD]
 gi|171993944|gb|ACB64863.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MC40-6]
          Length = 382

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 116/381 (30%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLTGVTETELTPIKPISGAPADALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     +L  L      +     +  + Y     ++
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLRENQQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I     L   K
Sbjct: 357 APLTAATPGLIYLALGLFALK 377


>gi|171316729|ref|ZP_02905941.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
 gi|171098079|gb|EDT42894.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria MEX-5]
          Length = 382

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 122/380 (32%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR-------LDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++ +         + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAAHENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLTGVTETELTPIKPISGAPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|325527103|gb|EGD04518.1| putative permease [Burkholderia sp. TJI49]
          Length = 382

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ GS +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQKGSYEP-PGHWLLKGVTETELTPIKPIAGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|332286756|ref|YP_004418667.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
 gi|330430709|gb|AEC22043.1| hypothetical protein PT7_3503 [Pusillimonas sp. T7-7]
          Length = 392

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 129/348 (37%), Gaps = 29/348 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ + I RS ++  + ++ +     +++ ++ +S+   +L  L  +    +PT 
Sbjct: 1   MRTARRYLAKEIYRSTIVVLMALIGLFTFFALIEELDNLSNQ-FTLLNLFYMQALALPTT 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L    F+   I
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMKLLTMLWIVTIPLVFGAFLLSEI 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----LYIKISKYNPNNTLQGIFIV 176
           I P       + S           L    +F+  D+      I I +   +  +  I + 
Sbjct: 120 ITPAAEIKSSEASLTLLGKAGGGRLNSGYWFKESDEQGGTRIINIGQLKSSGNVADITLY 179

Query: 177 DSRDTQTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + ++ Q    +  A+ G        ++L  G+V + S  +  +S +   +    T     
Sbjct: 180 EFKNGQELATFSTAKQGQFADG--TLVL--GDVKQTSINADSLSTLA-NAVQPDTPLTRL 234

Query: 236 STIVLK------ANDQNLSFLLNPNPNNPNYRPELLETY----------RSEFHKRLTQW 279
            T+  +        ++ ++ +L P   +     + ++                 +++   
Sbjct: 235 ETLPERTLKTSLTPERLIARILTPERMSIRVLLDYIDYLENNNLQTDRQIVALWRKMAYP 294

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
              ++  +I+I A       R+      +F+ + +  G F      ++
Sbjct: 295 FTLLV--MITIAAPISFMQTRRGGVGSKVFVGILLGVGFFMLNQLALN 340


>gi|307294586|ref|ZP_07574428.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306879060|gb|EFN10278.1| permease YjgP/YjgQ family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 367

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 121/357 (33%), Gaps = 11/357 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI-NLVSSSTESLNILLKISGYLIPTV 60
           +    Y+ R            +V +   + +L    ++++ +      L        P +
Sbjct: 10  RQISWYMARLFLTRTFAVLAMLVAVLQTLDLLGESGDILAYAGNGDAQLWHYVALRAPQI 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   + T  +L S+N+N+E++ +   G S   ++ P+L  A+ +++  +     
Sbjct: 70  VARFLPFSVLLGTLIMLASLNQNSEIISMKAAGLSAHQILAPLLAAALGVALISYAFNER 129

Query: 121 IEPKCRSTIKQLSAKAQLAL-TFSYLEENLFFRLDDDLYI--KISKYNPNNTLQGIFIVD 177
           I  +  + +    A     L   + ++ + + R  ++L     ++       L+ + I +
Sbjct: 130 IVARSTARLSAWQAVDYGPLPPETGVKASPWVRDGNNLVTAAIVAGRGTAVQLRKVEIFN 189

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             +     I  A  G  D   ++ +L   E  +          +    +         + 
Sbjct: 190 RVNNMLTTIVQAPKGHYDPVAKSWVLE--EARQFDVARGTERQVGTVRFGRDIRPDQFTL 247

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             +  +    S L      +                 +L+  L  ++  ++  VAA   A
Sbjct: 248 AKVDPDALTFSQL-QAAIGDLRDAGRPTSELEGSLWHKLSGPLSALLMPILGSVAAFGLA 306

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP----YYIPILYLFLFCISSIF 350
              Q      + ++L  ++ V   FS  +  +   P     + P L   L   + +F
Sbjct: 307 RSGQLFVRAVMGMALGFAYFVADNFSLAMGNLGAYPPFLAAWAPFLLFLLVGETVLF 363


>gi|107023406|ref|YP_621733.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
 gi|105893595|gb|ABF76760.1| permease YjgP/YjgQ [Burkholderia cenocepacia AU 1054]
          Length = 382

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 116/381 (30%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPITGQPADALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     ++  L      +     +  + Y     ++
Sbjct: 240 SQQVSLPEYRLHSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENQQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I     L   K
Sbjct: 357 APLTAATPGLIYLALGLFALK 377


>gi|295675784|ref|YP_003604308.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
 gi|295435627|gb|ADG14797.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1002]
          Length = 382

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 130/379 (34%), Gaps = 28/379 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNRALRSLLKIGVPLVIVTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  +  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTERADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAII-------LNDGEVHRKSPISK-----DI 218
            + I +     +   I  AQSG        ++       L D      +P          
Sbjct: 181 NVRIYEFDSKFRLSNIRIAQSGRYQPPGHWLLTGVTDTQLLDVARAPGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
           + +    Y+L++E +    +++L + D+   F L     +     +  + Y     K++ 
Sbjct: 241 NQVTLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWKKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI- 336
                 +  ++S+  A                I L +SF +F      I  +   P  + 
Sbjct: 301 YPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAPLT 360

Query: 337 ----PILYLFLFCISSIFL 351
                ++YL L  +   ++
Sbjct: 361 AATPGLIYLVLGLVGLKWV 379


>gi|78067268|ref|YP_370037.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
 gi|77968013|gb|ABB09393.1| YjgP/YjgQ like transporter [Burkholderia sp. 383]
          Length = 382

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLRNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPISGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|32473921|ref|NP_866915.1| permease [Rhodopirellula baltica SH 1]
 gi|32444458|emb|CAD74456.1| conserved hypothetical protein-putative permease [Rhodopirellula
           baltica SH 1]
 gi|327542994|gb|EGF29442.1| permease YjgP/YjgQ family protein [Rhodopirellula baltica WH47]
          Length = 398

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/397 (13%), Positives = 125/397 (31%), Gaps = 48/397 (12%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                 IL  I R F+++ + +  +  +I + +    +         +L++  + IP  L
Sbjct: 4   TRLTRTILFEILRIFVVALVVLTLLILLIAVGR---ELFRKGLGAMAVLQLLPFAIPISL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P         V   M  + E+  +  +G S + L++P +  A LLS       ++ 
Sbjct: 61  QHAVPATALFSVCCVYGRMAADGEISTVKASGISPLRLLQPAIVFAALLSPVAVYCSDMA 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
               +  +K++   +   + +  LE +  +  D    I + + +    +    +      
Sbjct: 121 VSWGKPGVKRVVLLSIEDIAYRLLERDHSYTSDHGFSIHVREID-GRRMISPRVTVRGKG 179

Query: 182 QTHKIYYAQSGSIDLDRQA----IILNDGEVHRKSPISKDIS-IMKF--------KSYTL 228
                  A  G + +D ++    + L D +V R   +  D     +F        +   +
Sbjct: 180 DDAFTVTASEGQLMMDEESLSLVLKLVDSQVIRGKGLQGDFYGEHQFEIPIGNALEETDV 239

Query: 229 QTESANSSTIVLKANDQNLSF-----------------LLNPNPN------------NPN 259
            T S +   + L  N++                     LL   P             +  
Sbjct: 240 STRSPSELPLRLIRNERLRQRERTHAKIGELAAFTGFSLLTSRPAEIGGEKSSAIQSSLQ 299

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
                L   ++E  +R  +      F L+    A               F  L      +
Sbjct: 300 SSRHRLTRLQTEPWRRWAEGFTCFFFVLVGAPLAIVAKTSDYWTTFGMCF--LPTILVYY 357

Query: 320 WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             +   + + +        +++    +S + +++I +
Sbjct: 358 PLYLLGLDQAKAGDMPPYGVWIGNVVLSGVGMMLIAR 394


>gi|167585748|ref|ZP_02378136.1| permease YjgP/YjgQ family protein [Burkholderia ubonensis Bu]
          Length = 382

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 115/363 (31%), Gaps = 29/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ FE Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLFEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DD-----LYIKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++ +      D+      ++ +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARDNGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEA-PGHWLLTGVTETELTPIKPIGGQPADALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    + L         S +++     +L  L      +     +  + Y     ++
Sbjct: 240 SQQVTLPEFRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLKENQQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPI 338
            P+
Sbjct: 357 APL 359


>gi|83594405|ref|YP_428157.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
 gi|83577319|gb|ABC23870.1| permease YjgP/YjgQ [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 114/331 (34%), Gaps = 24/331 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++   YI R    + + + L +  +  +  +++      S    ++++L+++ Y +P  L
Sbjct: 5   RTLTTYIARTYLTALVGATLVVGALLMLFDVIEITRRSGSKAIGIDVVLEMALYHLPMSL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF F      +   + R++EL++I   G S    + PV+ + ++L I      N +
Sbjct: 65  QSALPFVFMGGAVMIFWKLARSSELVVIRAAGLSVWQFLAPVIAVVVVLGIANVTLLNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSY--------LEENLFFRLDDDLYIK---ISKYNPNNTL 170
                +  +++ A     +            L EN     +  + +    + + +    +
Sbjct: 125 AAHLYTKYERMDAGMDSGVANPLALSDGGLWLREN---NPEGQVVMHAQGVRQVDNALRM 181

Query: 171 QGIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
            G+ I     D +      A++  +     A++L          + +    ++  S    
Sbjct: 182 TGVTIFRYGPDRRFESRIDAETAGLREG--ALVLTSVVTTYPGRVGERAETLEVPS---N 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLI 288
                           +   L  P               +R  +H  +   L  +   L+
Sbjct: 237 LTLPKIQDSFSPPETVSFWEL--PAFITFFEAAGFSAHAHRLHWHSLIASPLLLIAMVLM 294

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVF 319
             V + K +  R    +  I  +++  FGVF
Sbjct: 295 GAVFSLKPSQ-RSVNWLFRIVGAVAAGFGVF 324


>gi|315500013|ref|YP_004088816.1| permease yjgp/yjgq family protein [Asticcacaulis excentricus CB 48]
 gi|315418025|gb|ADU14665.1| permease YjgP/YjgQ family protein [Asticcacaulis excentricus CB 48]
          Length = 379

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 116/368 (31%), Gaps = 31/368 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
               YI+     +   + + +  I ++I  ++    +      S   ++ +     P ++
Sbjct: 21  RLTTYIITRCLMAIGTALVVVSSIIFLIDYVEISKSLGQRGDLSSLQIVGLLMLKSPNII 80

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ PF F   T +    +NR +EL+ +   G S    + P   +A +L         ++
Sbjct: 81  LVLLPFAFLFGTLSAFVGLNRRSELIAMRAAGMSAWRFVLPAAGMAAILGALT---VTVL 137

Query: 122 EPKC--------RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG- 172
            P          R   +Q  +  +      YL +           I   + + +  L   
Sbjct: 138 SPAATVLADQYDRFAAQQSQSDTRAKTGEIYLRQG---DGKQQTVIHAREQSEDGRLIDA 194

Query: 173 -IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP--ISKDISIMKFKSYTLQ 229
             +     + +  +          +D    +L  G    KS        + + + + ++ 
Sbjct: 195 SFWTFSLDEAEIPRFLT------RIDASEAVLRPGTWQLKSARVSKPGETTLYYNTLSIG 248

Query: 230 TESANSSTIVLKANDQNLSFLLNP-NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           +  +        A  Q+ +F   P               Y    ++ L   L  +   + 
Sbjct: 249 SNLSPERAFNRFAAPQSTNFWQLPGTIAQIESSGFSAAGYVLRLNQLLATPL--MFAAMT 306

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWG--FSYIIHKIEQNPYYIPILYLFLFCI 346
           ++ AA    L+R           + + F VF+       + K E  P ++   +   F  
Sbjct: 307 ALGAAFSLRLMRIGGLARLTLSGIVLGFMVFFLNQLCGSLGKAEVIPAFLAG-WATPFAA 365

Query: 347 SSIFLLMI 354
               + ++
Sbjct: 366 FLTAMTLL 373


>gi|239815706|ref|YP_002944616.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
 gi|239802283|gb|ACS19350.1| permease YjgP/YjgQ family protein [Variovorax paradoxus S110]
          Length = 369

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 132/377 (35%), Gaps = 30/377 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS---SSTESLNILLKISGYLI 57
           MK+    I     ++     L  + + +    +  +  +    S        L     LI
Sbjct: 1   MKTIRRLIYVEALKAVAFVTLGFLSLFFFFDFVDELQSIGRPESLAYGPAQALIYVTLLI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    +    V+  + +++E  I+  +G      ++ +L L +      F  
Sbjct: 61  PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVFLTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLYIKISKYNPNNTLQG 172
            + I P    T + L ++ Q +      T ++L+E    R +    + +     + +L+ 
Sbjct: 121 GDYIAPASERTGQLLKSRYQGSYSLVGNTGAWLKEK---RENVSYAVNVLSIARDGSLKN 177

Query: 173 IFIVDSRDTQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSP--ISKDISIMKFKSYTLQ 229
             I +        K   A S  I  D     L+D E+        ++   I+  K   L 
Sbjct: 178 ARIFEFDANGYVRKQLVASSARIFDDH--WQLSDVELQDYETRISAEKARIVTTKVPQLD 235

Query: 230 ----TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
                 S   S  +L+ +      L +    +     +  + Y  +F +++   L  ++ 
Sbjct: 236 WPTTLTSEMVSVALLRPDRMGTLDLFD-YIRHLEANGQTAQRYEIQFWRKVFYPLSCLVM 294

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PI 338
            ++++  A      RQ      +F  + I    F     F Y+ +    +P+       +
Sbjct: 295 VVLALPFA--YLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGL 352

Query: 339 LYLFLFCISSIFLLMIK 355
           +Y  +   +  +L++ +
Sbjct: 353 IYSVMSLAAFSWLVLRR 369


>gi|330752041|emb|CBL80552.1| predicted permease YjgP/YjgQ [uncultured Flavobacteria bacterium]
          Length = 374

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 122/332 (36%), Gaps = 10/332 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YILR    SF ++ + I+ IA V  I ++I+   +      I+       I   
Sbjct: 1   MQKLDWYILRKFMGSFFLTMILILAIAIVFDISEKIDDFQNGATMNEIVFDYYINFIAFY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +     + T    + +  N+E++ +  +GTS    ++P    A ++ +      ++
Sbjct: 61  GNLFSALILFISTIWFTSRITSNSEVVAVLTSGTSFNRFLRPYFIGATIICLLSLTLNHL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +    +  +      + + +  ++    Y+    Y+        F  +  D
Sbjct: 121 LVPHTNIK-RIAFEEKYITGVSRPINQKVHRQVLPGHYVYFETYSGQRQSGYQFTYEVFD 179

Query: 181 TQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSST 237
           +        A    +D       L++  +     ++ ++ I+  +    TL   S   + 
Sbjct: 180 SHRLASKLSADFVRLDTATGQWRLDNFRLRTLDSLNNEV-ILTGRRMDTTLAFTSEQIAP 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +      N + L            E + +Y+ E  +R +  +   +F L+++  A    
Sbjct: 239 KLSSIATMNSNELSRFIEQEEVTGNENIASYQMEMQRRTSYPVSSYVFVLLAVSLA---- 294

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
             ++R+    I I++ +     + F+  I + 
Sbjct: 295 -TQKRRGGLGINIAIGLILCAVYVFAMQISQT 325


>gi|121595376|ref|YP_987272.1| permease [Acidovorax sp. JS42]
 gi|120607456|gb|ABM43196.1| permease YjgP/YjgQ family protein [Acidovorax sp. JS42]
          Length = 355

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 110/333 (33%), Gaps = 11/333 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +G   L+  L I  +  V+++L     V    +    ++      +P  L M  P
Sbjct: 8   YLRRRVGTQILVLLLVITALMQVLELLDVTTDVLKRDQGFIGIVYYGLLRLPAELVMALP 67

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + T   L +M RN E+  +   G S + L+  +L LA +L++  F+  + + P   
Sbjct: 68  PAVLLGTLMALANMARNLEIATMRTAGLSMMRLLGYLLPLAAVLAVAQFVLSDHVLPPAE 127

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQ-TH 184
           + +K+  +    +          +        + +   +P+   L  + +    D     
Sbjct: 128 NGLKEWWS---ASAPADDTPTKRWAHTSGG-TVSMESTSPDGRRLIDVRLYVRDDRGLIQ 183

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
               A     D     +    G V+      + +  ++       T       + L    
Sbjct: 184 SRLTATEAQWDG---QVWRFKG-VNEFVYGDRRVERIQVAERAWDTNLRPEDVLRLDVAR 239

Query: 245 QNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
            NLS  +L           +    Y+S  ++     L   +  L+++  A          
Sbjct: 240 PNLSTAMLAEVIAGTRTGTQPHRYYQSVLYRSYAAPLAIFVMLLLALPTAVSLPRGTGGG 299

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
               + + L + F +  G    +    + P  +
Sbjct: 300 SRMAMALILGLGFLLCDGIVAALGLAARWPPLV 332


>gi|182677644|ref|YP_001831790.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633527|gb|ACB94301.1| permease YjgP/YjgQ family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 362

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 106/353 (30%), Gaps = 14/353 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y+        L     I  + +VI +++ +    +    + +++  +S    P+V 
Sbjct: 6   TLGRYLSSRFLFMILAVFGTIFSMIYVIDLVEMLRRAGNRPGATASLIAFLSFLRAPSVS 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC    T     ++ R  ELL+    G S   L+ P L +A+ + IF     N I
Sbjct: 66  EQILPFCVLFGTMATFINLTRRLELLVARAAGISIWQLMMPPLGIALAIGIFSVTLYNPI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF---FRLDDDLYIKISKYNPNN-TLQGIFIVD 177
               +     +  +    +     +  L+     +D    I+          L G+ +  
Sbjct: 126 SAMMKHRADGIETELFGGIGGQETKGGLWIRQNSVDGQAIIRAETVEAGGSRLGGVTLYT 185

Query: 178 -SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
             +D        A+   +        + +    R     ++I                 S
Sbjct: 186 YGKDGSFEARIEARHAKLVPG--VWQMTEA---RIIVPGEEIQEAGLYLLATNLTPGEVS 240

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             ++         L +               YR +F   L + LF +   LI+  AA   
Sbjct: 241 ENIVTPESVPFWELQSFRAATEL-AGLDSTRYRLQFQLLLARPLFFIAMVLIA--AAFSL 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
              R       +       F ++    +            PI       ++S+
Sbjct: 298 RFFRFGGITKMVCGGAGAGFVLYIVSKFTGDLGTSGLLSAPIAAWSPAVVASM 350


>gi|116690488|ref|YP_836111.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|170733809|ref|YP_001765756.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
 gi|116648577|gb|ABK09218.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia HI2424]
 gi|169817051|gb|ACA91634.1| permease YjgP/YjgQ family protein [Burkholderia cenocepacia MC0-3]
          Length = 382

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPITGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|320335816|ref|YP_004172527.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
 gi|319757105|gb|ADV68862.1| permease YjgP/YjgQ family protein [Deinococcus maricopensis DSM
           21211]
          Length = 371

 Score = 86.9 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 99/324 (30%), Gaps = 18/324 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+LR +   +++  L  + +     I   + ++ S   +      +    +P +
Sbjct: 25  LKKLAPYVLREVLPLYVVGALVFLLLTTTDLISGVVGILLSYHPTPRQAWLLYVTQVPRL 84

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L                  + +++EL      G   + L  P+L  A L+  F+F +   
Sbjct: 85  LNQSLILAIPFAVLVGFGRLAKDSELKATAAGGVRPLNLAWPLLLPAALIGAFVFYNGAY 144

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN----TLQGIFIV 176
           + P+ ++                 +     +  D  L+       P       L G+ + 
Sbjct: 145 LTPQAQAQWNTAWFSVYRQAPPPPVTTTYTYAQDGTLFSASRVETPQGATVANLTGVLVQ 204

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
              +        A +GS D   +   L  G V R      D    +F +     +    +
Sbjct: 205 TPTE-----TITASTGSWDARAKTWTLPGGWVVR-----GDARPAEFHTPRTFPQRDEIA 254

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                  +  L  L      +     +   TY+    +R       + F      A+   
Sbjct: 255 RPTPPPAESTLPEL-RAELASGRLNVQERRTYQFNIARRYADAFTALGFA---FAASALG 310

Query: 297 ALVRQRKKIHPIFISLSISFGVFW 320
            +VR R       + L + F + W
Sbjct: 311 LMVRNRAWAVTNVVFLILGFYIVW 334


>gi|254521231|ref|ZP_05133286.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
 gi|219718822|gb|EED37347.1| putative YjgP/YjgQ family permease [Stenotrophomonas sp. SKA14]
          Length = 363

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 116/366 (31%), Gaps = 17/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+LY+ R +  + L++   +V +  V+        +  +  +L        Y +P    
Sbjct: 2   RFDLYLGRTVFTTVLLTWAVLVGLDVVMAFSGEFKDIGKNGYTLGHAAAWVLYTVPRRAY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  +   +EL  +   G SR  L   V     LL+  +  S   + 
Sbjct: 62  TMFPTAAVIGALMGLGQLAATSELTALRALGLSRRRLSVSVAIALSLLTAVMVFSAETLG 121

Query: 123 PKCRSTIKQLSAKAQ-------LALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIF 174
           P  +     L A A+          +  +  E   F          +        L+ + 
Sbjct: 122 PWGQDRADALKASAKWGRDIATTRYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILRDVR 181

Query: 175 IV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +   + D Q   I +A +     DR   +L           S     +  + +  + ++ 
Sbjct: 182 LYRIAEDGQIASITHAATAE--HDRDGWVLTGVRRDTFGERSATRQEVAREPWNSRLDAG 239

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +  + K  +  ++ L   +             +   +  R   W +P+    + + A 
Sbjct: 240 ALAAGIAKPRNLRITEL-RASIEYRERNGLDARDFEDIYWSR---WFYPLNVLALCLAAV 295

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFL 351
                 +R       +F+ +  + G +    +         +   I Y L    + ++  
Sbjct: 296 PFAFGSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAVSG 355

Query: 352 LMIKKK 357
           L+ ++K
Sbjct: 356 LLFRRK 361


>gi|163746449|ref|ZP_02153807.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
 gi|161380334|gb|EDQ04745.1| permease YjgP/YjgQ family, putative [Oceanibulbus indolifex HEL-45]
          Length = 365

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 126/365 (34%), Gaps = 24/365 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    SF++    +  +  ++  + +    +      + +L ++   +P  + 
Sbjct: 2   ILHFYFARRFFTSFMVITAVLAALVMLVDGVDQARRFADDDVGWDQVLGMTLLNMPQTIN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M+ P    + T  +   + R++E+++    G S +  +   + +A+++        N I 
Sbjct: 62  MILPLIMILATVALFIGLARSSEMVVTRAAGRSALRALVAPVVVALIIGTLAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLE--ENLFFR---LDDDLYIKI-SKYNPNNTLQGIFIV 176
                  +QL+ K +   + +     E L+ R    +    I+     +  + L  + I+
Sbjct: 122 AATSERSEQLTQKYRSNGSSALSVSDEGLWLRQGTEEGQSVIRAWRTNSDASVLYNVTII 181

Query: 177 DSRDTQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                +   +   A+S  +      +    G          +      +  TL   S+ +
Sbjct: 182 SYDAEKGPIRRIEAESAQLSGGDWQLT---GAKIWPLEAGVNAEGAAEEHETLTIPSSLT 238

Query: 236 STIVLKANDQ-------NLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
              + ++  +        L   +           +     ++E    L +  F  +  ++
Sbjct: 239 VERIRESIARVAAVSIYELPEFIRQLEQAGFSTRQHEVWLQAE----LARPFF--LVAMV 292

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            + +A      R       +  S+ + FG+++  S+    + +N      L  +   +++
Sbjct: 293 LVASAFTMRHTRFGGTGVAVLASILLGFGLYFIRSF-AQILGENGQIPVTLAAWAPPVAA 351

Query: 349 IFLLM 353
           IFL +
Sbjct: 352 IFLAL 356


>gi|145588806|ref|YP_001155403.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047212|gb|ABP33839.1| permease YjgP/YjgQ family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 384

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 132/378 (34%), Gaps = 26/378 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            +E Y+ R I  +F      +V +     IL  +  V     +L + L       P+ + 
Sbjct: 8   IYERYLARQIYAAFGFILFALVALFLFFDILSELGSVQGQ-YTLALALLHVLLKAPSRIS 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  V   +   +E  I+   G      +  +  +++ L +   +      
Sbjct: 67  EIIPIAGLIGSIYVFAMLASQSEFTILRIAGLDVKRGLITLGKISLPLIVLTLVMSEWAG 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFR-----------LDDDL-YIKISKYNPNNTL 170
           P   +  +Q+  KA  +   S  +  ++ +           +   + Y+ + K   +N +
Sbjct: 127 PYTEAKSEQIRMKALGSSYSSQFKTGVWVKDRLRDEDGSGPVRPGVRYVNVGKVEKDNEI 186

Query: 171 QGIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDG------EVHRKSPISKDISIMKF 223
           + I + +  D      I  A SG  D      +LND       E+ +  P++   S    
Sbjct: 187 RDIRMYEFNDVYNLLSIRSAVSGHFDETG-IWVLNDVTETRFKEIKQTDPLNPVFSAQTL 245

Query: 224 KSYTLQTES---ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
               L  ES       +++L + ++     L    ++     + ++ +   F K++    
Sbjct: 246 THPILTLESEVTPQILSVLLISPEKMSILSLGRFIDHLQENKQDVQRHSIAFWKKVVYPF 305

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL- 339
              +   +++  A  +             I L +SF +F      +  +   P ++  L 
Sbjct: 306 TIFVMLALALPFAYLKVRAGSVGIKVFGGIMLGMSFQLFNSLFSNVGMLSAWPAFMTALT 365

Query: 340 -YLFLFCISSIFLLMIKK 356
             L  F ++ + L  + K
Sbjct: 366 PPLLYFLLALMGLRWVSK 383


>gi|33519519|ref|NP_878351.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
 gi|33517182|emb|CAD83564.1| putative inner membrane protein; predicted permease [Candidatus
           Blochmannia floridanus]
          Length = 370

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 133/359 (37%), Gaps = 19/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++ I ++ L+  + ++   +  + ++ ++L  S+   +  +       IP +  
Sbjct: 2   ILIKYIMKEICKNQLIILILLLLACFCQKSIKVLSL--SNNIPIYWIFLYLFLSIPDLGK 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ PF   +        ++ + E+L + +   ++  LI+ +   + +++I   I+   + 
Sbjct: 60  LIIPFSLFLSVLISCYRLHMHNEILAMYSCAVNKYVLIQSICMYSTVIAILSLINLAYLA 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD-DLYIKISKYNPNNTLQGIFI---VDS 178
           P C    + +  K +    F  L E  F+ L D  L + I     N  L  +FI   V +
Sbjct: 120 PHCEQYKENIFFKMKKNTYFIELIEKKFYLLFDEHLVLFIDNI-KNGMLNHVFILKRVQN 178

Query: 179 RDTQTHKIYYAQSGSI----DLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            D     I  A  GSI    +   Q IIL  G  +     ++ + I +F +Y        
Sbjct: 179 IDKNVFSIITADQGSIHYNFNDKSQLIILQSGMYYEI-HNTQLLCIPRFVTY-FNQYRTL 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    D N S + + N N      EL      E + RLT ++   I  +I++    
Sbjct: 237 VHDKYQFLRDVNKS-VKHMNINQLLISSELESYI--ELNWRLTLFISVFIMPMIALFVMM 293

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             A        + +   +   F            +      I ++++       I LLM
Sbjct: 294 NIAY---GYLSNFLLAVVLYVFFYMLHIMLYTCSVLNYMNIIILMWIINCIYLIILLLM 349


>gi|254247470|ref|ZP_04940791.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
 gi|124872246|gb|EAY63962.1| hypothetical protein BCPG_02268 [Burkholderia cenocepacia PC184]
          Length = 382

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLAANQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPITGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|220925666|ref|YP_002500968.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
 gi|219950273|gb|ACL60665.1| permease YjgP/YjgQ family protein [Methylobacterium nodulans ORS
           2060]
          Length = 362

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 116/356 (32%), Gaps = 18/356 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   YI   + R      L +  + + +  ++ +             + ++S    P++
Sbjct: 5   TTLGRYIAGRLLRMIAGVFLTVFALVYTLDFVELMRRAGETQGIGALTVARLSLLRTPSI 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF         L  ++R  EL++    G S    ++P +F+A+ +   +  + N 
Sbjct: 65  AEQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVFVALAVGALMVGAYN- 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   + +KQ S + +  +               DL+I+    +    ++    ++   
Sbjct: 124 --PMA-AALKQHSTEIEARIFSRSNRGGS----GKDLWIRQRSVDGQAIVRAETAIEGTT 176

Query: 181 TQTHKIYYA--QSGSI--DLDRQAIILNDG--EVHRKSPISKDISIMKFKSYTLQTESAN 234
           T      +A    G+    ++ +   L+DG  E+     ++KD     + +Y + +    
Sbjct: 177 TLAGVSVFAFDDQGTFTQQIEARQATLHDGYWELQDARVLAKDSQPESYDTYLVASNLVP 236

Query: 235 SSTI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           S         D    + L                YR +    L + +  +   ++ + A+
Sbjct: 237 SQVRQRFTPPDSVPFWQLGDTIARSERAGLDATRYRLQRAVLLARPM--LFVAMVLVAAS 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R           ++  F ++     +           P+   F   + S+
Sbjct: 295 VSLRFFRFGGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSL 350


>gi|319793490|ref|YP_004155130.1| permease yjgp/yjgq family protein [Variovorax paradoxus EPS]
 gi|315595953|gb|ADU37019.1| permease YjgP/YjgQ family protein [Variovorax paradoxus EPS]
          Length = 369

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 134/377 (35%), Gaps = 30/377 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS---SSTESLNILLKISGYLI 57
           MK+    I     ++     L  + + +    +  +  V    S        L     L+
Sbjct: 1   MKTIRRLIYVEALKAVAFVTLGFLCLFFFFDFVDELQSVGKPESLAYGPMQALIYVTLLV 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P+ L  + P    +    V+  + +++E  I+  +G      ++ +L L +   I  F  
Sbjct: 61  PSHLYELLPITVLIGCIFVMARLAQSSEYTILRTSGLGPWRALRTLLLLGVGFVILTFAI 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLAL-----TFSYLEENLFFRLDDDLY--IKISKYNPNNTL 170
            + I P    T + L ++ Q        T ++L+E       D++   + +   + + +L
Sbjct: 121 GDYIAPLSERTGQLLKSRYQGTYSLVGNTGAWLKEKR-----DNVSYAVNVLSISRDGSL 175

Query: 171 QGIFIVDSRDTQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK----S 225
           +   I +        K    +S  I     A+   + + +     +    I+  +     
Sbjct: 176 KNARIFEFDANGYVSKQLVVKSARILDGHWALADIEKQDYDTRSAADKARIVTTEIPQMD 235

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           +     +   S  +L+ +  +   L +    + +   +  + Y  EF +++   L  ++ 
Sbjct: 236 WPTSLTAEMVSVALLRPDRMSTIDLFD-YIRHLDANGQTAQRYEIEFWRKVFYPLSCLVM 294

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYI----PI 338
            ++++  A      RQ      +F  + I    F     F Y+ +    +P+       +
Sbjct: 295 VVLALPFA--YLHFRQAGITTYVFGGVMIGISFFLLNNVFGYLGNLSNWSPWLTAAAPGL 352

Query: 339 LYLFLFCISSIFLLMIK 355
           +Y  +   +  +L++ +
Sbjct: 353 IYSVMSLTAFSWLVLRR 369


>gi|295690098|ref|YP_003593791.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295432001|gb|ADG11173.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 353

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 104/340 (30%), Gaps = 7/340 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY+LR +    L + L ++ I  ++ +L     +      +  +   +   +P +  
Sbjct: 2   KLQLYVLRTVATRILGAALILMSILQILDLLDVTTDILDRGLGMAGVAYYAALRLPRLFE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P           + + R + ++ +  +G S   ++   +   I + +   +   ++ 
Sbjct: 62  QVAPIAVLAGGLFAFSQLARESAVVAMRASGISGYRIVGMAMPAVIAVMLLDALCGQVLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+   T+                    F    D L I          +  + I   R+ +
Sbjct: 122 PRSDPTLADWWRNTTPVAERKAPSPRTFRAGSD-LVIGADASADGREITSLTIF-RRNAK 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +   ++     D +   L   +  R +      S     ++       +   +    
Sbjct: 180 GILVEKVEASKALYDGRRWTLQSPKTTRFAGDLAQTSTAASINWPTALRPQDVQGLFGDD 239

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
           +    +       N  + RPE    Y + F          ++  L+S   A       Q 
Sbjct: 240 SAPTAATARRALENGGSDRPESF--YATHFQSAFASPFVSLVMLLLSAPVALANFRSGQG 297

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
             +    +   + F V  G    +    ++    P+L ++
Sbjct: 298 AVLLTAGLGAGLLFLVANGMLTALG---ESGALSPLLAVW 334


>gi|134296647|ref|YP_001120382.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
 gi|134139804|gb|ABO55547.1| permease YjgP/YjgQ family protein [Burkholderia vietnamiensis G4]
          Length = 382

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 116/381 (30%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  ++E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLATNQALRSLLKIGVPLVIITYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPIAGQPADALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     +L  L      +     +  + Y     ++
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSLINLFR-YIQHLRENQQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I     L   K
Sbjct: 357 APLTAATPGLIYLALGLFALK 377


>gi|148244590|ref|YP_001219284.1| hypothetical protein COSY_0441 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326417|dbj|BAF61560.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA]
          Length = 357

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 134/359 (37%), Gaps = 30/359 (8%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R          + I  + +  Q++  +         +  LL + G+ +   +  +    
Sbjct: 1   MRNTLVILSAVFIVISLVVFGNQLVVVVKESLEEGIPVKDLLPLVGFNMIRDIVPILSLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     +  + +N+E +I+++ G +    +  +  L I++ I + I   ++ P  +  
Sbjct: 61  LLLAIILSINKLYKNSEAVIMNSLGLNNKHFMVFIQPLVIVIVIVIVILTTVVVPWSKQQ 120

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY------NPNNTLQGIFIVDSRDTQ 182
              +   ++    FS+++E  F    +   I  +        +    ++GIFI    +  
Sbjct: 121 KDLIINHSKNISKFSFIKEREFQEFKNGDIIFFASKVSNFNNSKEQNMEGIFIYTFIN-N 179

Query: 183 THKIYYAQSGS----IDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS-- 236
              I  A+       ++ +   + L +G  +    +     I+ F  Y +Q    N    
Sbjct: 180 EPVIILAKQAKKYTNLNTNSVYLRLKNGTNYHGFILDTKKKILNFNLYDIQIIDGNMKKL 239

Query: 237 -TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            + V+K   ++   L         +  +L E   +EF  R++Q L  +I   + ++    
Sbjct: 240 ISKVIKVESKSTFELF--------FSRKLTE--IAEFQWRISQPLSILILSALGVL---L 286

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
               +   +   + I + + F ++     I   + +    +PI+   L+ +  + LL+I
Sbjct: 287 GRTSQNGGRNLGVLIGVVV-FILYNNALLISKSVLERGESLPII--GLWWVHLVMLLLI 342


>gi|222085452|ref|YP_002543982.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722900|gb|ACM26056.1| permease protein [Agrobacterium radiobacter K84]
          Length = 361

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 118/359 (32%), Gaps = 21/359 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y       + L   L +  + ++I   +    ++     ++ I L ++   +P +
Sbjct: 4   STLGRYFFTRYIITTLWFFLGVTSLVYLIDFSETAGRLAGLPGYTVKIGLLMTAVRLPFI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF        VL ++NR  EL+I    G S    + P +  A  + +   ++ N 
Sbjct: 64  MQQTVPFIALFVGMTVLIALNRRRELVIARAAGISVWQFMTPFVVGAFCVGLLTMLALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNT--LQGIFI 175
           +    +   + + A  +   ++       + R  D    + I       N T  +  +FI
Sbjct: 124 VAAWGQRQAETMEADLRGDPSYRNTLSIPWLRQSDGKSDIIIGAKAVLDNGTTLMNVVFI 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS---PISKDISIMKFKSYTLQTES 232
                        AQS  +        L +  V R     P  K  + ++        + 
Sbjct: 184 HFDSQGNIILRQDAQSAKL---ENGYWLLNSVVERAPGEIPAHKSTTQVR-----TNLKQ 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              S  + +        L N             +   ++FH  L+Q    V   LI+   
Sbjct: 236 DFVSERLAQPETIAFYDLSNR-IAIAKSFGISTKALETQFHSLLSQPFLLVAMTLIAATV 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           + K +   Q + +  I   +   F ++   + ++     +    P +  ++  I ++  
Sbjct: 295 SLKFSRFNQSRSV--ILGGILSGFVLYVV-TVLVKAFGSSGVVPPFVATWIPVIVALAF 350


>gi|206561016|ref|YP_002231781.1| putative permease [Burkholderia cenocepacia J2315]
 gi|198037058|emb|CAR52979.1| putative permease protein [Burkholderia cenocepacia J2315]
          Length = 382

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYITFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPISGQPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|329894347|ref|ZP_08270217.1| putative permease [gamma proteobacterium IMCC3088]
 gi|328923143|gb|EGG30466.1| putative permease [gamma proteobacterium IMCC3088]
          Length = 353

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 102/317 (32%), Gaps = 8/317 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+   +  +  +  L +V +  +  ++  +  + ++  + +  L      +P  
Sbjct: 1   MRLLDRYVGMQVIYATCLVLLVLVGLDALSALIDELQDLKAN-YTFSKALLYVAASVPAR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +   +EL++I   G S   L++ ++   ++ +  + I    
Sbjct: 60  IVELAPIGILIGVLVALGQLASTSELVVIRGAGLSSWHLLRILMKPVLVFAGLMLIMGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + PK     +   A A            ++ R +   +I  +       + G+ +    D
Sbjct: 120 VVPKSEQFGEAERALALSNKGSITGRYGMWNR-EGRHFIHFNAVQAGGVIYGVTLFTFDD 178

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
             + H+   A   +    R   +L + +  + +      S      +         +   
Sbjct: 179 NWRLHESMSANRATFQ--RAGWLLENVQRTQVNSWGSQTSEHTTLLWETDLTPDLLAMES 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL--ISIVAADKRA 297
           L     +++ L          +      Y     ++LTQ L   +  L  +  +    R 
Sbjct: 237 LSPERLSINGLF-QYSQYLKQQGLESADYEVAAWRKLTQPLAIFVLVLVAMGFIFGPLRD 295

Query: 298 LVRQRKKIHPIFISLSI 314
                +      + L  
Sbjct: 296 GTLGLRVFIGTLVGLVF 312


>gi|255263663|ref|ZP_05343005.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
 gi|255105998|gb|EET48672.1| permease YjgP/YjgQ family protein [Thalassiobium sp. R2A62]
          Length = 363

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 104/337 (30%), Gaps = 13/337 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +FL   +    I   + +++++   S    S    + ++    P  L 
Sbjct: 2   ILHRYFARRFFLAFLGVFVIFFAILGFLDMVEQLGKFSGDDVSFTQTVGLTLLNTPQALY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  S+ R++E+++    G S I  +   +F+A+L+ +F     N I 
Sbjct: 62  RILPLVMILSTIALFLSLARSSEMVVTRAAGRSAIRALSAPIFVAVLIGLFAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALT--FSYLEENLFFRLDDD---LYIKISKYNPNNT-LQGIFIV 176
                  ++ ++  +       S   E L+ R  D+     I+        T L  +  +
Sbjct: 122 AATSQEYEKRASDYRSDDAQVLSVSAEGLWLRQGDNTQQTVIRAEAATLEGTELSRVTFL 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QTESAN 234
              D        A S  +     A  L + +       + + S  K     +        
Sbjct: 182 SFTDAGPITRIEADSARLTPG--AWELTNAKSWPLDAPNPEASSTKHDVLRVPSTLTRDQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +   +  L                 +   F+  L       +  ++ + A  
Sbjct: 240 IRDGFGTPSAIPIWELPA-FIKQLETAGFSARRHAVWFNMELALP--AFMVSMVMVAAGL 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                R  +    +  ++ + F  ++  ++     E 
Sbjct: 297 TMRHQRGGRVGLSVLAAIMLGFAFYFLRNFAQILGEN 333


>gi|226329628|ref|ZP_03805146.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
 gi|225202814|gb|EEG85168.1| hypothetical protein PROPEN_03538 [Proteus penneri ATCC 35198]
          Length = 232

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 88/201 (43%), Gaps = 2/201 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YI R I +S LM+   +V ++ +I+ + ++  V     +       +   I   +
Sbjct: 3   GVLDRYIGRTILQSILMTLFLLVSLSGIIKFVDQLRKVGQGDFTTLDAGIYAILNILKDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L ++   +EL+++  +G +R+ +   V+  AI L +   +     
Sbjct: 63  QIFFPMAALLGALLGLGALATRSELVVMQASGFTRLQIAGSVMKTAIPLVLLTVLIGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P+     +   A+  +  +       ++ + D + +I I++    N +QGI + D + D
Sbjct: 123 APQGEQYARNYRAEKIMGNSLVSTNRGMWAK-DGNQFIHINRIKSQNEMQGITLYDFNND 181

Query: 181 TQTHKIYYAQSGSIDLDRQAI 201
            +   + YA S + D+D++ +
Sbjct: 182 RKLETVRYASSATYDVDKKNV 202


>gi|182413838|ref|YP_001818904.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
 gi|177841052|gb|ACB75304.1| permease YjgP/YjgQ family protein [Opitutus terrae PB90-1]
          Length = 369

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 107/373 (28%), Gaps = 23/373 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ ++LR       +     V +  V  +      +         L       +P  
Sbjct: 1   MNLYDRHLLREWLAILGLVLCATVGLLLVQVLYDDFRDLRELGARGLDLWMYLFVTVPMY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +V P    +    VL  ++R  E   +   G S + +  PV  + +      +     
Sbjct: 61  LALVLPLALLVSLMFVLGKLHRANEFTALRAAGVSLLRITAPVWIVGMFACGLSWWLNTT 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL--------FFRL-DDDLYIKISKYNPNNTLQ 171
           + P        L    +     + +  +         F     D ++             
Sbjct: 121 VVPWSVDESAALRDTMRFRKESNLMPPDRVSAVYSVGFDNPRADRMWFFNRYSKWTQKAY 180

Query: 172 GIFIVDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI-SIMKFKSYTLQ 229
           G+ +    + +       A+    + +R      +G      P + ++ S + F      
Sbjct: 181 GVTVSIMDEHRRELQRIVAEQAWFEAER-GWTFRNGRELTFRPDTGELESTVPFTERVEA 239

Query: 230 TESANSS---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
               +      I  K  D +L  L                 Y   +   +   L P+I  
Sbjct: 240 QFREDPKLMLLIDRKPTDLSLPQLRRLIDYYAIEENPKGTPYAVRYFGLVADTLAPLIVI 299

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSIS-FGVFWGFSYIIHKIEQNPYYIPI--LYLFL 343
            I+I  A         +    I +S SI  F +++ FS I   +       P+   ++  
Sbjct: 300 AIAIPFAVTGV-----RVNAAIGVSKSIGLFMLYYIFSNIASALAAKQLVDPMTAAWVPN 354

Query: 344 FCISSIFLLMIKK 356
             ++ +      +
Sbjct: 355 IGMALVAGWFFVR 367


>gi|149196258|ref|ZP_01873313.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
 gi|149140519|gb|EDM28917.1| permease YjgP/YjgQ [Lentisphaera araneosa HTCC2155]
          Length = 358

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 121/342 (35%), Gaps = 11/342 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI+R +   F+      +FI ++  +   ++ +     + +I++     LIP   
Sbjct: 4   SILSRYIMRSMLLPFVCCICGFIFIFFIANVQDDLSDMLKLDNTKDIIIYY-FLLIPDKF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + T    +S+NRN E++ + + G S   L  P+   ++L+ I L++S   +
Sbjct: 63  TYIAPMSLLLATIYCFSSLNRNHEVIAMRSAGLSLTKLSAPIYLFSVLVGISLYLSSQYL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNNTLQGIFIVDS 178
           EP CR  +K      +        E ++F   D      +   S  + N +   I   D 
Sbjct: 123 EPYCR--LKTFELNTRAESMDRSHEFHIFTAFDGKQKRKWAVSSDEDNNFSAIQILEYDE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +    +   A SG  +         +  +   S   +   I K  +Y L+ +  +   I
Sbjct: 181 -NNNLTREIEALSGEFNS-EIGWNFKNVSIAEFSEDHRIKKIEKHDNY-LRNDIKDDPII 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR-LTQWLFPVIFGLISIVAADKRA 297
           +   ++   +  +    +  N    +    ++    R  +    P    +  ++      
Sbjct: 238 LSNIDELKGTPSIAQIKSELNSGRPVDTKRKAFLETRQYSLIFSPFSCLIGVLLGIPLAT 297

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
             ++   +     ++ I    +   S   +    +    P++
Sbjct: 298 SSQRSPGMSAASRAIGIMLVYYIINSAFTNLGRNDI-LPPMM 338


>gi|317494175|ref|ZP_07952591.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917948|gb|EFV39291.1| inner membrane protein yjgQ [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 356

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 121/364 (33%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R I  + + +   +V ++ +I+ + ++  V     S       +   +P  
Sbjct: 2   LGVLDRYIGRTIFSTIMATLFMLVSLSGIIKFVDQLRKVGQGDYSAAGAGLYTLLSVPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P    +     L  + + +EL+++   G +R+ +   V+  AI L I        
Sbjct: 62  IEVFFPMAALLGALLGLGMLAQRSELVVMQAAGYTRMQIASSVMKTAIPLVILTMAIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     +   A+     +    +  L+ +   D +I I +     ++QG+ I    +
Sbjct: 122 VAPQGEQAARNYRAQQMYGGSLLSTQTGLWAKDGTD-FIFIQRVTGEKSIQGVSIYSFDN 180

Query: 181 TQ-THKIYYAQSGSIDLDRQAI------ILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            +   K+ YA S + +  +  +       L D +    S     +               
Sbjct: 181 ERHLQKLRYANSATFEGHQWKLSQVEESNLTDSKRITGSQTLNGVWKT-------NLTPD 233

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
               + +  +  ++S L +          +    Y+     ++   L   +  L+++   
Sbjct: 234 KLGVVAMSPDSLSISGLYH-YVKYLKQSGQESSRYQLNMWSKIFAPLSVAVMMLMALSFI 292

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                           IS    F V       +  +   P  +  +   L  +     ++
Sbjct: 293 FGPLRSVPMGVRVLTGISFGFFFYVLDEIFGPLSLVYSVPPVLGAILPSLLFLLISVYML 352

Query: 354 IKKK 357
           ++K 
Sbjct: 353 LRKS 356


>gi|297620918|ref|YP_003709055.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
 gi|297376219|gb|ADI38049.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
          Length = 371

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 99/360 (27%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+L    +   +     + +    + L  I   +  + +  +  +     IP +LP
Sbjct: 4   IIWRYLLSQYFKVMGLCVAAFIAVLLTSR-LDEIAHFAVLSPTPALAAQFILLQIPYILP 62

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V P    + +  ++  ++++ EL    + G S    + P+LF ++L++   F   + + 
Sbjct: 63  IVIPVSCLISSILLVQRLSKSHELTAFRSCGISLKDFLTPILFSSVLVAFINFYIISELS 122

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
                       + +       L            +  +           + +      Q
Sbjct: 123 TYSHYQTIIWKEELRSTNPLHLLRNKHLMGAKGGFFNSLGDSKLGKNAGEVILALPNKNQ 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
           +    +     I  D       +G                F    ++  +   +     +
Sbjct: 183 SRITLFLAKELISDDN----FFEGTDVTMITAMPSGDPDSFDHLLVENAAKTKTLTDDFS 238

Query: 243 NDQ------------NLSFLLNP--NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                           +  LL          +    +    SE  +R +       F L+
Sbjct: 239 QLMKQKQWKIGNDYLTMEQLLAKLYEEQANGFSVNDINCCYSEIIRRFSLGFSAFSFTLM 298

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            +      +     KKI    + + +  G +    +I     QN      LY     +  
Sbjct: 299 GLAFGISISRTHSLKKI----LWVVLLAGGYITTLFIGKSAGQNLSLSLALYTIPHLLII 354


>gi|324005416|gb|EGB74635.1| hypothetical protein HMPREF9532_04926 [Escherichia coli MS 57-2]
          Length = 359

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 129/365 (35%), Gaps = 24/365 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                +    Q+ + A      + +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 GASPLQQQALQIKSTATALGEDNDIIGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTES 232
                   YA+S +I+ D+   IL+     +     + +  +        F S  L+  S
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILHGVNYKKWLNGKETLETLDNLAWQSAFTSMNLEELS 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +T  ++  +  + +L            +    Y     ++L Q +  +   L+++  
Sbjct: 240 MPGNTFSVRQLNHYIHYL--------QDTGQPSSEYHLALWEKLGQPILTLAMILLAVPF 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCIS 347
               ++ R       + + + +    +  +  +++         P+  L     F+    
Sbjct: 292 --TFSVPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVAL 349

Query: 348 SIFLL 352
           S+   
Sbjct: 350 SLVYW 354


>gi|330720162|gb|EGG98555.1| putative Permease [gamma proteobacterium IMCC2047]
          Length = 323

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 12/272 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           +L      +P  + ++TP    + +   L  +  N+EL ++   G S   +    +  A+
Sbjct: 19  VLMYVLMTVPKRIYVITPLAVLIGSLLGLGMLANNSELTVMRAVGMSVARISWAAIKPAL 78

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN 168
           L      +    + P   +  +   A A+        +   ++    D ++  +   P  
Sbjct: 79  LFVAAALLIGEFVVPHSENYAQSQRALAESRGEAVSSKYG-YWHRGGDTFMHFNAVLPGG 137

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
            L G+   +  D +  +  +A+      D   +         K     D  +   +  TL
Sbjct: 138 VLYGVTQYEYDDKKLTRSLFAEKAIFQGDHWVLK------QIKHSYLSDTQVEAGEDLTL 191

Query: 229 ----QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
               +        +V+   D ++  L +   N    +    + Y   F K++ Q    V+
Sbjct: 192 RWDTELTPEVLKVVVVDPADLSIMGL-HTYTNYLKEQELDAKRYLLAFWKKVLQPFAIVV 250

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISF 316
             L+++                   I L + F
Sbjct: 251 MVLVALSCIFGPLRSVTMGYRVFAGIILGVVF 282


>gi|170697654|ref|ZP_02888742.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
 gi|170137402|gb|EDT05642.1| permease YjgP/YjgQ family protein [Burkholderia ambifaria IOP40-10]
          Length = 382

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/380 (13%), Positives = 121/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGIPLVIITYMIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +   +P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGNLSPDSTIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDSKFQLQNVRIAQTGRYEP-PGHWLLKGVTETELTPIKPISGAPADALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVTLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENQQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|315608793|ref|ZP_07883769.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315249487|gb|EFU29500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 416

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 126/365 (34%), Gaps = 11/365 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPTV 60
           K  + YI++    ++  S   I+ IA V    + ++  +        I+       IP  
Sbjct: 57  KILDWYIIKKFIGTYFFSIALIISIAIVFDFNENLSKFTQYHAPWRAIIFDYYANFIPYY 116

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             + +P    +      + +  N+E++ +   G S   L++P +   +L++   +     
Sbjct: 117 SNLFSPLFVFIAVIFFTSKLAGNSEIIAMLAAGVSFKRLMRPYMISCVLIAALTYYLGAY 176

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
             P   + I+Q         T +   +N+  ++D  +   I  Y+ N     G  +    
Sbjct: 177 EIPHG-TVIRQDFEALYRNNTKNTAADNVQLQVDKGVIAYIQHYDNNTKKGYGFKLNKFE 235

Query: 180 DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D +      A     D     +    + + +  +   + + I+    K   +  E  +  
Sbjct: 236 DKKLVSDLTAMEVQYDTISDTKFHWRMRNWKQRKLQGLKEHITSGAEKDTVILMEPTDLV 295

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
               +        L        +     +  Y+ E+HKR+       I  +I +  + ++
Sbjct: 296 YSKGQQETFTSPELREYISKQIDRGSSNVVQYQVEYHKRIATSFASFILTVIGLSLSSRK 355

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIK 355
              R+      + + L++SFG +     +      N    P+L  +    + +I    + 
Sbjct: 356 ---RKGGMGLYLGLGLALSFG-YIMLQTVSATFAINAGAPPMLAAWTPNMVFAIVAYFLY 411

Query: 356 KKYTK 360
           +K  K
Sbjct: 412 RKAPK 416


>gi|254669826|emb|CBA04196.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 182

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 2/175 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +IL     +   +  +  +L  +   +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEILYETGNLGKGSYGIWEMLGYTALKMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +     + +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGFIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           + P      + + A A      +     L+ + + +  I + +  P++TL GI I
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNT-GLWLK-EKNSIINVREMLPDHTLLGIKI 173


>gi|313144652|ref|ZP_07806845.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129683|gb|EFR47300.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 341

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 129/358 (36%), Gaps = 17/358 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+     + F    L + FIA V+ ++           S   L  +  YLIP+ 
Sbjct: 1   MAMLKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRTYVVKMSFLDLGTLFMYLIPSS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F       ++ +  + EL++  + G+  + +++  L + +L ++ LF+   I
Sbjct: 61  LFFIIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K   A+ +  +  + ++   F +   D  + +   + N   Q + +     
Sbjct: 121 LLPLTTSASKNFVAQKKADIDVN-IKPGEFGQKLGDWLVYVDSVD-NRKYQNLVLFSENG 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      AQSG  + ++    LN           ++I  + + + +++   +       
Sbjct: 179 FEGDTFIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSEPQLSGY 238

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                              +  E  +  R     +L Q +   +F L+SI       +  
Sbjct: 239 DLIAYWK----------EAFSLESRQKLR-----KLAQAVMVSLFPLVSIFLIPLFGIAN 283

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R + +  +  +  S  +++   YI          I I  L+ F    ++   I + Y
Sbjct: 284 PRFRSNMSYFYVIGSVALYFVLMYIASDNFALVGMISIPILWFFGGFFLYKKFIARFY 341


>gi|282880317|ref|ZP_06289031.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305819|gb|EFA97865.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1]
          Length = 391

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 117/362 (32%), Gaps = 20/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K  + YI++    +++ S   I+ IA V    + ++  +     +  I+       IP 
Sbjct: 31  IKRIDWYIIKKFIGTYIFSIALIIAIAIVFDFNENLSKFTEYKAPVRAIIFDYYANFIPY 90

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  TG S   L++P +   IL++   F    
Sbjct: 91  FSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLATGISFKRLMRPYMISCILIASVSFFLSA 150

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
            + P   + ++Q               +N+  ++D      I  Y+       G  +   
Sbjct: 151 YVIPHG-TVVRQNFDNLYKNNKKRSAADNVQLQVDKGTIAYIQHYDNKTKRGYGFSLDKF 209

Query: 179 RDTQTHKIYYAQSGSIDL----------DRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           +D +      A     D               I    G     +  ++  +++  +   L
Sbjct: 210 KDKKLVSHLTAMEIQYDTIADAKYHWTVTGWKIRELKGLREHITSGAERDTVIMMEPMDL 269

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                   T       + +S  +N    N       +  Y+ E+HKR+       I  +I
Sbjct: 270 VYSKGQQETFTSPELREYISKQVNRGSGN-------VVQYQVEYHKRIASSFASFILTII 322

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
            +  + ++        +        +   +    +      +  P     +   LF + +
Sbjct: 323 GLSLSARKRKGGMGLYLGLGLALSFLYILLQTISATFAINADAPPMLAAWVPNILFSVVA 382

Query: 349 IF 350
            F
Sbjct: 383 YF 384


>gi|186476978|ref|YP_001858448.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
 gi|184193437|gb|ACC71402.1| permease YjgP/YjgQ family protein [Burkholderia phymatum STM815]
          Length = 382

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 132/381 (34%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYEKYFARQVYLTFVFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGQLQPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS----------- 219
            + I +     +   +  A+SG         +L D    +   +++D S           
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGKYQP-PGHWLLTDVTDTQLIDVAQDASKPADALNPVYR 239

Query: 220 --IMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
                   Y+L++E +    +++L A ++   F L     +     +  + Y     ++L
Sbjct: 240 AKQAALPEYSLRSELTPQILSVLLVAPERMSMFNLFRYIQHLTENHQDTQRYEIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYY 335
                  +  ++S+  A                I L +SF +F   FS+I +    N + 
Sbjct: 300 LYPFAVFVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGNL---NTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I  +  L+  K
Sbjct: 357 APLTAATPALIYLVLGLVGLK 377


>gi|149193964|ref|ZP_01871062.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
 gi|149135917|gb|EDM24395.1| hypothetical protein CMTB2_02728 [Caminibacter mediatlanticus TB-2]
          Length = 323

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 129/357 (36%), Gaps = 36/357 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+   +YIL      FL     I  I  +I I+   N+ S    +   LLK     +P +
Sbjct: 1   MRKISVYILNQFLPLFLTIFFVISAIISLIYIITISNITSKIQITFIELLKFYILSMPQI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +     F +   N+ + ++   EL+ + + G    TL+ P+L LAILL+        I
Sbjct: 61  LLITLAISFFISAINLYSKLSETQELIALFSLGFKPKTLLNPILLLAILLTFINLFILFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +     L  + +    F++ + +   +   D  I  +K   NN+   I++     
Sbjct: 121 SIPYAKMNFNNLKNEKKQEAKFNF-QSSQVSQQFGDWVIFANK-GKNNSFTKIYLY---S 175

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + +K   +Q+  +      +               + ++     Y             +
Sbjct: 176 PKENKFIISQNAQLQNKNSVL---------------NFALTIGNIYDFNKSMQ------I 214

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI-FGLISIVAADKRALV 299
           K N   ++ L+     +     +  +  + EF K L   L P+  F  I +++     L 
Sbjct: 215 KFNKMEINQLIPKVKISIFNFKDYFKYNKKEFAKYLPIALLPITLFFFIPLISFFHPRLN 274

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +     HP+F +++I          I+    +N     ++ +  F I  I      K
Sbjct: 275 K----SHPLFYAITI-----LSIYSIVSLSNKNFILSILISVLFFIIGGILYKWKVK 322


>gi|15836745|ref|NP_297433.1| hypothetical protein XF0140 [Xylella fastidiosa 9a5c]
 gi|9104926|gb|AAF82953.1|AE003867_7 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 368

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 128/377 (33%), Gaps = 29/377 (7%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNAFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRKRLSLSVMMMIGMGTGLMAL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQ 171
           +   + P  ++    L A A+     +    + F+  + ++++        + +    + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYQSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIM- 179

Query: 172 GIFIVDSR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + + D R              ++  ++  +   IL   +V R +   + +    F S  
Sbjct: 180 -LILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQ--QVQRDTFSERGVQRETFHSLP 236

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVI 284
            ++    ++     A  +NLS   +    +  YR         +  ++  R   W +PV 
Sbjct: 237 WRSRLDPAALAAGLAKPRNLSA--HELVQSIEYRRRNHLDARDFEGQYWSR---WFYPVN 291

Query: 285 FGLISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYL 341
              + + A      L+R        F+ +  +   FW       +I       Y     L
Sbjct: 292 VLALCLAAIPFSFGLLRSGGMGKRTFLGILFALS-FWMLQMFFERIASVLKLNYQIFYLL 350

Query: 342 FLFCISSIFLLMIKKKY 358
               +      + ++++
Sbjct: 351 PPMVMLGGSYWLFRRQH 367


>gi|154148987|ref|YP_001406533.1| YjgP/YjgQ permease [Campylobacter hominis ATCC BAA-381]
 gi|153804996|gb|ABS52003.1| putative permease, YjgP/YjgQ family [Campylobacter hominis ATCC
           BAA-381]
          Length = 340

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 139/367 (37%), Gaps = 37/367 (10%)

Query: 1   MKSFELYILRCIGRSF--LMSCLFIVF-IAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M   E Y+      +F  L S LF++  I + +QI +  + V     +L  L K+  +++
Sbjct: 1   MYRAEKYLFSNFLSTFASLFSTLFLIMSIIFFLQIARITSFVE---INLYELTKLYLFML 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L    P  F +     L  +++  E +++   G S   + +  LFLA ++S+ + + 
Sbjct: 58  PRILIFTIPISFFVALAMSLFRLSKENETIVLFTLGYSSEKIARFFLFLAFIVSVSMLLI 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS---KYNPNNTLQGIF 174
              + P     +K      +       ++ + F +   D  + I    + N  +  + + 
Sbjct: 118 SLFMMPLA-ENLKDNFVSYKKISANLNIKSSEFGQKFSDWLVFIDDQKETNTGSIYENLI 176

Query: 175 IVDSRDTQTH-KIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           +   ++  +  +I  A SG I  +    ++ L +G+ +        IS   F    ++T 
Sbjct: 177 LYHPKNKTSDERIILASSGEIANENSNFSLKLKNGKAYTNDEKKWHISY--FDELIIRTV 234

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
             +      K  +         N  N + +              L+ ++   +F L SI 
Sbjct: 235 QKD------KIKENGGILGYWKNEKNASKQ--------------LSIYVLVSLFPLASIY 274

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            A    +V  R +   I+I +      +  F+ I+   +Q    IP+ +     +S IF 
Sbjct: 275 FAVSFGIVTYRYEKGFIYIGIFGVLFCY--FAMIMIFAKQPLLAIPLTFFIFLILSYIFY 332

Query: 352 LMIKKKY 358
                + 
Sbjct: 333 RQKIARR 339


>gi|259419234|ref|ZP_05743151.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
 gi|259345456|gb|EEW57310.1| permease YjgP/YjgQ [Silicibacter sp. TrichCH4B]
          Length = 368

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 128/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  +   + FL+    ++ +  +I + ++             LL+++    P  L 
Sbjct: 2   ILDLYYAKRFFQWFLVIAAVLMSLVMLIDLSEQFRRFDGQDLQFGQLLELTLLNTPAALN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   M R++EL++    G S I  + P + +A++L      + N I 
Sbjct: 62  EFLPLIMILTTIVLYVGMARSSELVVTRALGRSGIRALLPPVVVALILGGLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLA---LTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVD 177
               +    LS   +        S   E L+ R    +   + I   N     + +F+ D
Sbjct: 122 AATTNRFDSLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSV-IHAANYRGDAENLFLYD 180

Query: 178 ------SRDTQTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQT 230
                 + D    +   A    +D +    +L D +V      ++ + S   +    L T
Sbjct: 181 VSILTYTPDGGPTRRTIAAEARLDGED--WVLRDAKVWQLIVGVNPERSAKSYDELRLPT 238

Query: 231 ESANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              N          + +S + L     + +        ++      L + LF V   L+ 
Sbjct: 239 TLTNERIRDTLGYAEGISIYELPQTIKSLSEAGFSTTRFQVWLQVELARPLFLVAMVLVG 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             AA      R       +  S+ + F +++  ++    + +N     +L  +   ++SI
Sbjct: 299 --AAFTMRHTRLGGTGIAVLTSVLLGFALYFVHNF-ARILGENGQIPILLAAWAPPVASI 355

Query: 350 FLLM 353
            L M
Sbjct: 356 LLTM 359


>gi|301628860|ref|XP_002943564.1| PREDICTED: lipopolysaccharide export system permease protein
           lptG-like [Xenopus (Silurana) tropicalis]
          Length = 350

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 104/343 (30%), Gaps = 32/343 (9%)

Query: 42  STESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIK 101
               L+  L      +P  L  + P    + T  V+  + +++E  I+  +G      ++
Sbjct: 13  GGYQLSHALLTVVLRLPNYLYELLPISVLIGTIYVMARLAQSSEFTIMRTSGMGPGRALR 72

Query: 102 PVLFLAILLSIFLFISENIIEPKCRSTIKQL----SAKAQLALTFSYLEENLFFRLDDDL 157
            +L L        F   + + P      + L      +     T  +L+E         L
Sbjct: 73  MLLVLGCAFVALTFAMGDYVAPMANRAGQMLKVRYLGQLTTGATGGWLKERK--DDGHSL 130

Query: 158 YIKISKYNPNNTLQGIFIVDSRDTQTHKIYY-AQSGSI------------DLDRQAIILN 204
            + +    P+  + GI I D  D         A S  +              D    +L 
Sbjct: 131 AVNVRALGPDGQMIGIRIFDFDDQGRLSAQLQAASAQVAQTAQTAQTAEDAADAPGWVLT 190

Query: 205 DGEVHRKSPISKDISIMKFKSYT-----LQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
             +  R      D + ++              +   S  +LK        L     ++  
Sbjct: 191 QAQQRRFVLRGADQAHVEQTDSASMRWPTGITAEMVSAALLKPERMPTIELF-QYISHLE 249

Query: 260 YRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
              +  + Y  EF +++   L  ++  ++++  A      R       +F  +      F
Sbjct: 250 ANGQSAQKYEIEFWRKVFYPLSCLVMVVLALPFA--YLHFRSGGLAAYVFGGVMAGISFF 307

Query: 320 WG---FSYIIHKIEQNPYYIPILYLFLFCISSI--FLLMIKKK 357
                  Y       +P+        ++  +S+  F  ++ ++
Sbjct: 308 LLNTVSGYAGTLQNWSPWLTAAAPGLIYSAASLAAFGWLVLRR 350


>gi|57242354|ref|ZP_00370293.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter upsaliensis RM3195]
 gi|57017034|gb|EAL53816.1| conserved hypothetical integral membrane protein, putative
           [Campylobacter upsaliensis RM3195]
          Length = 351

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 133/363 (36%), Gaps = 27/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    YIL     + L   L +  I  ++  +Q  NL SS   S   L K+ G+++P +
Sbjct: 11  LKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSIEISFLDLFKLYGFMLPRI 70

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E ++    G + + + +  L +A  LS+ +     +
Sbjct: 71  LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVALV 130

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     +++     +        +   F +   D  I I         + I +    S
Sbjct: 131 MIPIVY-QLQKNFVDYKKTQIKFNYKTGEFGQKFLDWMIFIQD-EKEGGYENIIMYHPKS 188

Query: 179 RDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D    ++  A+  +++   +     LN+G+++      + + I +F++  + T+ ++  
Sbjct: 189 TDNLKEQLIIAKEANLERSNEGFAFRLNEGKMYNFD-GGEALFIGEFENLVVNTKFSD-- 245

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       +    + N    +         EF   +   LFP+   L ++      
Sbjct: 246 ----NLGQTKAFYEYWDDINTNADKAR-------EFVMYVCISLFPLASTLFALSFGIVT 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIK 355
               +      +F  +++ FG+      +    +       +++ F F  S I    MI 
Sbjct: 295 YRYEKGFIYLGMFGVIAVYFGL------LSSLYKPPLLMSFLIFSFAFAASIICFKKMIM 348

Query: 356 KKY 358
            +Y
Sbjct: 349 SRY 351


>gi|282878370|ref|ZP_06287162.1| putative membrane protein [Prevotella buccalis ATCC 35310]
 gi|281299556|gb|EFA91933.1| putative membrane protein [Prevotella buccalis ATCC 35310]
          Length = 410

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 118/365 (32%), Gaps = 26/365 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           ++  + YI+R    +++ S   I+ IA V    + ++  +        I+       +P 
Sbjct: 50  IRRIDWYIIRKFIGTYIYSIALIIAIAIVFDFNENLSKFTEYHAPARAIIFDYYANFVPY 109

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              + +P    +      + +  N+E++ +  +G S   L++P +   +L++   +    
Sbjct: 110 YSNLFSPLFVFIAVIFFTSKLAGNSEIIAMLASGISFKRLMRPYMLSCVLIASLSYYLSA 169

Query: 120 IIEPKC---RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            + P     R   + L   ++       ++     ++   +   I  Y+        F +
Sbjct: 170 SVIPHGTVIRHNFESLYRNSRKQTAADNVQ----LQVGKGVIAYIQHYDNKTKRGYGFSL 225

Query: 177 DSRDTQTHKIYY----------AQSGS-IDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
           D  + +    +           A S    ++    I    G     +  +   ++++ + 
Sbjct: 226 DKFENKKLVSHMTAMEIQYDTIADSKYHWNVTGWKIRQLKGLREHITSGADLDTLIQMEP 285

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
             L        T         +S  ++   +N       +  Y+ E+HKR+       I 
Sbjct: 286 TDLVYSKGQQETFTSAELKDYISKQVDRGSSN-------VVQYQVEYHKRIASSFASFIL 338

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            +I    + ++        +       S+   +    +         P     +   +F 
Sbjct: 339 TIIGFSLSARKRKGGMGLYLGLGLALSSLYILLQTVSATFAINANAPPILAAWIPNIIFA 398

Query: 346 ISSIF 350
           + + F
Sbjct: 399 LVAYF 403


>gi|289806566|ref|ZP_06537195.1| inner membrane protein YjgQ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 219

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 82/208 (39%), Gaps = 12/208 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
            D R  +   + YA S   D + +   L
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRL 206


>gi|224418451|ref|ZP_03656457.1| hypothetical protein HcanM9_04150 [Helicobacter canadensis MIT
           98-5491]
 gi|313141983|ref|ZP_07804176.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131014|gb|EFR48631.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 341

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 126/358 (35%), Gaps = 20/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+     + F      + FIA V+  ++   +      S   LL +  Y +P ++ 
Sbjct: 2   RIKNYLFHSFAQIFFPIFFVLFFIASVVIFIRIAGVTFVVQISFFELLSLYFYTLPLMIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P  F +  T  L+ ++ + EL ++   G +   +IK    +A L+S  LFI   ++ 
Sbjct: 62  FVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFFPIAALVSFSLFILSLVLT 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P   +  +Q   + +       L+   F +   D  + + K   +++ + I ++     +
Sbjct: 122 PLSDTAYRQFLEE-RKNSININLQAGEFGQKLGDWLVYVQKSKEDSSYENIVLLSF--AK 178

Query: 183 THKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
              + ++ +  I      +  IL  G ++R  P    +  + F +  +++       + L
Sbjct: 179 EGGMIFSDNAKIVNQMGVMEAILEKGSIYR--PKEDFVEKILFDTLIIRSSITAIDEVDL 236

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                        +      R   +    S F       L  + F    ++        +
Sbjct: 237 GVIGYWKRAFYENDRQKKTLRNLSMYVMMSCF------PLVSLFFF--PLLGVKNPRYQK 288

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
               +  + +      G+F+   Y+               ++L     +F  +IKK Y
Sbjct: 289 NYTILQAMGV-----IGIFYALMYLFASYLPLLGMFIFPIIWLLLGYLLFERVIKKYY 341


>gi|315638467|ref|ZP_07893644.1| conserved hypothetical integral membrane protein [Campylobacter
           upsaliensis JV21]
 gi|315481458|gb|EFU72085.1| conserved hypothetical integral membrane protein [Campylobacter
           upsaliensis JV21]
          Length = 341

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 130/363 (35%), Gaps = 27/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YIL     + L   L +  I  ++  +Q  NL SS   S   L K+ G+++P +
Sbjct: 1   MKLIFKYILNQFLGTHLSIFLVLFGIVSMVFFIQIANLTSSIEISFLDLFKLYGFMLPRI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +  T  L  +++  E ++    G + + + +  L +A  LS+ +     +
Sbjct: 61  LIFTLPLAFFVALTLALYRLSKENESVVFFTLGFTPLKMAQFFLKIATFLSVLMLGVALV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV--DS 178
           + P     +++     +        +   F +   D  I I         + I +    S
Sbjct: 121 MIPIVY-QLQKNFVDYKKTQIKFNYKTGEFGQKFLDWMIFIQD-EKEGGYENIIMYHPKS 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            D    ++  A+  +++   +     L+ G+++          I +F++  + T+ ++  
Sbjct: 179 TDNLKEQLIIAKEANLERSNEGFAFRLSAGKMYNFDADEALF-IGEFENLVVNTKFSD-- 235

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
                       +    + N    +         EF   +   LFP+   L ++      
Sbjct: 236 ----NLGQTKAFYEYWDDINTNADKAR-------EFVMYVCISLFPLASTLFALSFGIVT 284

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL-LMIK 355
               +      +F  +++ FG+      +    +       +++ F F  S I    MI 
Sbjct: 285 YRYEKGFIYLGMFGVIAVYFGL------LSSLYKPPLLMSFLIFSFAFAASIICFKKMIM 338

Query: 356 KKY 358
            +Y
Sbjct: 339 SRY 341


>gi|311694208|gb|ADP97081.1| permease YjgP/YjgQ family protein [marine bacterium HP15]
          Length = 345

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 122/352 (34%), Gaps = 12/352 (3%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R +G +  +  + ++ +  +   +  ++ + ++ + +   L      +P  +    P  
Sbjct: 1   MRSVGGAMFLVMMVVLSLDLIFAFIAELDDIRNNYQ-ILDALWYVFLTLPRRIYDYLPLG 59

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             M     L SM  ++EL ++   G S   ++   +  A+++ +   +    + P     
Sbjct: 60  AFMGCLVGLGSMASSSELTVVRAAGVSLKRIVWSAMKPALVIVVLGVLIGEYLAPPAERV 119

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVDSRDTQTHKI 186
            +   A A  A +       ++   + D YI ++   PN  L G+  F  D  D Q    
Sbjct: 120 AQSYKAVALGAGSNVASASGVW-HKEGDSYIHLNAVQPNGVLHGVSRFQFDD-DRQLLAA 177

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            +A+      D    +L +                +   +         S +++K  + +
Sbjct: 178 SFAERAIYQGDH--WLLENVRTTSFEDDRTVRVDDRTLRWETGLSPGVLSVLIVKPENLS 235

Query: 247 LSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIH 306
           ++ L          +      Y   F K+    L   +  L++I        +R      
Sbjct: 236 MTGLYT-YATYLGEQSLNASRYWLAFWKKALMPLGTAVMVLVAISFIFGP--LRSVTMGF 292

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFLLMIKKK 357
            +F  L +     +   ++   +     + P+L  L    +S++   ++ ++
Sbjct: 293 RVFTGLLVGLLFKYMQDFL-GPMSLVYGFNPMLAVLVPIAVSAVAGGILMRR 343


>gi|225619415|ref|YP_002720641.1| Permease [Brachyspira hyodysenteriae WA1]
 gi|225214234|gb|ACN82968.1| Permease [Brachyspira hyodysenteriae WA1]
          Length = 356

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 118/357 (33%), Gaps = 10/357 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P      +T VL +  +N E+L I+N+G S      P+  + I L +FL      
Sbjct: 61  TYYIFPVALMFSSTYVLGTFVKNKEMLAIENSGISLFKFSMPMFIIVIGLCLFLVFFWEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG-IFIVDSR 179
           +           +   +     S       F  ++ LY   + +     +Q  I +    
Sbjct: 121 VAAPLNKVSFAANDAMRGREQVSKSGPWQLFGGNNHLYFIETYFYKEQYMQNTIIVKLDD 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D        +     + + +   + DG +   S  +K+I + K  +Y L           
Sbjct: 181 DGGIQFRVSSPHIQWNNEDRKWYVMDGILTTFS-ENKEIKVEKVNNYPLDLLERPEHFYG 239

Query: 240 LKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               D  +LS   +                 ++ H R++   +     +I ++A+     
Sbjct: 240 RPPLDAMSLSEESHIIKLQKEV-NMNTSKLETDLHYRIS---YCFSGFIIVLLASLFSKF 295

Query: 299 VRQRKKIHPIFISLSISFGVF---WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             Q   +  + + + ++   +     F  +    + N +    +   +F I  I   
Sbjct: 296 STQSVLVVSLVMVIIVALLYYSILMVFRSMGEAGDINAFIAAWMPNIIFAILCILAF 352


>gi|307543949|ref|YP_003896428.1| permease [Halomonas elongata DSM 2581]
 gi|307215973|emb|CBV41243.1| K07091 [Halomonas elongata DSM 2581]
          Length = 354

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 102/355 (28%), Gaps = 5/355 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI R +  + L+  + ++ +  VI  +  +  V     +L +   +    +P    
Sbjct: 5   RLDRYIARNVLGAILVVQVVLLGLDLVITYINDLGDVEGDYGALQVFFYLV-MRLPWRFY 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  M  + EL ++   G S   ++  V+   IL+   +      + 
Sbjct: 64  QYAPVGVLIGALIGLGGMASSNELTVMRAAGRSLARILWGVMKPVILVIAVVLFIAEFVS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P           +          E   + R  D  Y +      +N +  +        +
Sbjct: 124 PSTEQYASAWRLEKMQGEGAVLTERGGWQREGDSFY-RFGAIRVDNVVLDLTRYRFEGRE 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             +   A+           +L + ++ R      +++    + +  +   A  + ++ + 
Sbjct: 183 LREAVSARRAVWRDG--GWVLENVDITRFVDGRTEVTHQATRPWQTELTPAELNRLLRRV 240

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             Q  S L          + +        F +++   L      L++             
Sbjct: 241 ETQAPSELWAH-ARYLEAQGQDATQPLLYFWQKMLMPLTMASLMLVAASFVFGPLRSVAA 299

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                  +   + F            +        +L   L C +  F ++ +  
Sbjct: 300 GTRVFYGVITGLVFKYLQDLLGPASTVFGFSPAWAVLAPTLICAALGFYMLRRSG 354


>gi|226357375|ref|YP_002787115.1| membrane protein; permease [Deinococcus deserti VCD115]
 gi|226319365|gb|ACO47361.1| putative membrane protein; putative permease [Deinococcus deserti
           VCD115]
          Length = 347

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 114/362 (31%), Gaps = 24/362 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                ++LR + R +       + +     +   +  + +    L   +   G ++PT+L
Sbjct: 3   SILTRFVLREVLRWYAAGAALFLTLQMTDVLSTTVAKLLTYDPPLWKAVAAFGAILPTIL 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                           + M R++E   I   G   ++L+ P+L    ++ +    +   +
Sbjct: 63  NRTLVLAVPFAILLAFSRMQRDSEFKAILAAGVRPLSLVWPLLAPFAVVGLIAGYNAGTL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN----TLQGIFIVD 177
            P       +   +          +E+  F     LY      N        L G+ +  
Sbjct: 123 VPAGLKQWDRAWYRIYEQTPPPPTQEHYTFAPAGALYYASRIVNAKGGDRAELTGVMVQ- 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR--KSPISKDISIMKFKSYTLQTESANS 235
               +  +   A SG  D   +   L +  V R  + P  K  +++  +  TLQ   A  
Sbjct: 182 ----RGEETLTATSGVWDAKARTWTLQNAWVVRPGQPPRQKTGALVLPQRDTLQPPPAEG 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +        L   L+P              Y+ +   R+   + PV+F L    A   
Sbjct: 238 KQLSNAQLRAGLKRELSPAQ---------RRDYQYQLATRVADPVTPVVFAL---AAGAL 285

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
             L+R R       +    SF + W  +  +      +P     L    F + +  L   
Sbjct: 286 GLLIRSRATAFAAVLVFIASFYILWSTAPQLARAGAMDPALAAWLPNLTFLLLAGVLAWR 345

Query: 355 KK 356
            +
Sbjct: 346 LR 347


>gi|313682233|ref|YP_004059971.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155093|gb|ADR33771.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 340

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 136/358 (37%), Gaps = 18/358 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL  +   F    L +  IA VI +++     +    +L+ + K+  +++P +
Sbjct: 1   MDKLRRYILSNLSILFFSIFLPLFAIASVIFMIKLATYTAVIQITLSEMAKLYLFVVPEL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L  ++ + E++++ + G S + + + +   A+LLS+ LF++  +
Sbjct: 61  LFYTLPIAFVVGGALALYRLSNDNEMVVVFSLGISPLFVARILAVPALLLSLLLFVNFVV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P  +        K +    F+ L  + F     D  + I+K +P + + G  I+ ++ 
Sbjct: 121 VTPYIKIISANFLEKKRAEAKFN-LGASEFGHHFGDWMLFINKNDPQSRVFGDVILFNKS 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +   +  A    +   +  + L        S  +  +  M FK+  +  + +    +  
Sbjct: 180 MKDEILIKADKAELINKQGVLQLRLDNGVSYSYDNILLRTMLFKTGYINDKLSTDPMVYR 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
              D   +  L                      +R        +F LIS+       +V 
Sbjct: 240 NTLDYWTNNELRERKT-----------------QRFITNTLLSLFPLISVFLMIALGIVH 282

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R +   I++ L +S   F+  + I  +         +  ++L    S +  ++  ++
Sbjct: 283 ARHQKRWIYLWLFLSIVGFYAAAIITQQWLGFHTIWVVTLVWLIITYSFYKRLVGSRF 340


>gi|300718280|ref|YP_003743083.1| permease [Erwinia billingiae Eb661]
 gi|299064116|emb|CAX61236.1| Predicted permease [Erwinia billingiae Eb661]
          Length = 361

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 113/336 (33%), Gaps = 19/336 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R I   F  +   ++ +     ++  ++ V+         L +    +P  
Sbjct: 1   MTIFSRYLMRNIFIGFAAAAGLLIPLFTTFNLINELDDVAPGGYRWTQALLVVVMTLPRS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PF   +     L  ++++ EL  I   G S   + + +    +++++ L   +  
Sbjct: 61  LVDLAPFIALLGGIVGLGQLSKSLELTAIRTAGFSISRIARVMFCAGLVMTLTLGAVDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SR 179
           +    +    Q+   A           N  +    D ++ +   +  N   GI I     
Sbjct: 121 VAAPLQQRALQIKNVAMAKAESDSDAGNALWARSQDDFVTVQSLDNRNQPVGIEIFSWQP 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTES 232
           D       +AQS +I   +    L++    R     + ++ +        F    L+  +
Sbjct: 181 DLTLKSYIFAQSATI-AGKGMWTLHNVTEKRWDKQQETVNNLPEMQWHSLFSGEDLKRLT 239

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             + +   +     + +L        +   +    Y S   ++  + +  +   L+++  
Sbjct: 240 LPAESFSARQLADYIVYL--------HKTGQPSLEYESALWQKAGRPILILAMILLAVPF 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
               +  R       + + + +    +  +  +++ 
Sbjct: 292 --TFSTPRAPGLGSRLALGVIVGLVTWIVYQIVLNL 325


>gi|319760185|ref|YP_004124123.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038899|gb|ADV33449.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
          Length = 371

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 123/335 (36%), Gaps = 31/335 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI++ + R+ L+  + +  +  + Q L +I  V +      I L ++   IP +  
Sbjct: 2   ILIRYIIKEVFRNQLIILILLFLVC-ICQKLIKIVGVDNPIPVYLIFLHLT-LNIPELGK 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +V PF   +         + + E+L + +   +R   +K +   +I++ I   I+   + 
Sbjct: 60  LVIPFSLFLSVFITCYRFHLHNEILAMYSCAINRFFFVKSIFLYSIIVFIISLINVMWLS 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS---- 178
           P C        +     +    L E  F  +     +   K   N  LQ IFIV      
Sbjct: 120 PYCEQLRYVTLSSINKNIYSIKLVEKKFLLMLSKHTVFFIKKIKNKNLQYIFIVKKNHHI 179

Query: 179 RDTQTHKIYYAQSGSI---DLDRQAIILNDG---EVHRKSPISKDISIMKFKSY-TLQTE 231
             +    I  A +G +     + +AI L  G   E+H    I  +I I  F  Y TL   
Sbjct: 180 NGSNVCVIITANNGDVYNYSNNLKAITLKSGTYYEIHYDQLIFTNIYISDFSRYHTLIDY 239

Query: 232 SANSSTIVLKAND-QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +  S     K  +   +S L+  +     Y          E + R T  +  +I  +I++
Sbjct: 240 NMKSPQKGFKIVEHMTISQLICHDSLPEKY---------IELNWRFTLLVSIIIMPIIAL 290

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
           +              +  F++  ++  ++  F  +
Sbjct: 291 LLVI--------NISNGYFLNFVLAISLYILFFML 317


>gi|92117864|ref|YP_577593.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
 gi|91800758|gb|ABE63133.1| permease YjgP/YjgQ [Nitrobacter hamburgensis X14]
          Length = 365

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 129/365 (35%), Gaps = 24/365 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y         + +      I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 6   NTLGRYFASRFV---VAALGVFASIFLLLVLVDYIEMVRRTSGLASASAIMVAETSLFRV 62

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  +TPFC  +       +++R  EL++    G S    I P L  A++L +    +
Sbjct: 63  PQLLEKLTPFCVLIGAMTCYLALSRRLELVVARAAGISAWQFISPALACALVLGVLATTA 122

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEE--NLFFR--LDDDLYIKISKYNPNN--TLQ 171
            N +    R   K++ A+   +++   L+E    +     DD   I  +  +      L 
Sbjct: 123 YNPMSANLRELSKKMEAELFGSVSGGGLQEASGFWINQVTDDGQAIINAARSEQQGVRLT 182

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ +     D+   +   A+  +++  R    L  G   R +  S  +    F       
Sbjct: 183 GLTVFRFDPDSTFRERIEAREATLEDGRW---LFKGVR-RFTLDSPPVEQETFV-LPTSL 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            +A            +   L     ++ +        YR ++HK + Q    ++  ++ +
Sbjct: 238 TAAQVRNSFSTPETVSFWQLPGYIRSSESSGFATAG-YRLQYHKLIAQPF--LLAAMVML 294

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSI 349
            A+      R       +   +   F ++   S +   + +     PI   +   C+  +
Sbjct: 295 AASVSLRFFRFGGVQKMVLSGVGSGFLLYV-LSKVTEDLSKAELMNPIAAAWLPVCVGGL 353

Query: 350 FLLMI 354
              ++
Sbjct: 354 AGFLV 358


>gi|299133713|ref|ZP_07026907.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
 gi|298591549|gb|EFI51750.1| permease YjgP/YjgQ family protein [Afipia sp. 1NLS2]
          Length = 360

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 124/361 (34%), Gaps = 21/361 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS----TESLNILLKISGYLI 57
            +   Y  R      + S    + I  ++ ++  I +V  +    T S  ++ + S + +
Sbjct: 4   TTLARYFARRFI---IASLAVFLGIFLLLVLVDYIEMVRRTSSIPTASAIMVAETSLFRV 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + PFC  +   +   +++R+ EL++    G S    I P L  A+L+ +   + 
Sbjct: 61  PQLLEKLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVAALLMGVLATVV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNN--TLQGIF 174
            N I    +   K++ AK         +E++   ++  +   I  +  + N    L G+ 
Sbjct: 121 YNPISAAMQERSKEMEAKLFSNGGVQNVEQSWINQVTSEGQSIISAALSQNQGTRLSGVT 180

Query: 175 IV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +   + D        A   +++     +    G        +  I      +  L+T   
Sbjct: 181 VFRFNPDGSFRDRIDANEANLEPGEWRL---GGARIHSMTAAPVIQ----DNLLLKTNLT 233

Query: 234 NSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +      A  + +SF   P    +          YR ++ K L +    ++  ++ + A
Sbjct: 234 PAQVRNSFATPETVSFWQLPGYIQSSASSGLATAGYRLQYQKLLARPF--LLASMVLVAA 291

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           A      R       +   ++  F ++          +    Y         C+  +   
Sbjct: 292 AVSLRFFRFGGVQKMVLSGVAAGFLLYVLSKVTEDLSKAELMYPLAAAWLPVCVGGLTGF 351

Query: 353 M 353
           +
Sbjct: 352 L 352


>gi|15964906|ref|NP_385259.1| hypothetical protein SMc00583 [Sinorhizobium meliloti 1021]
 gi|307300976|ref|ZP_07580745.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
 gi|307317711|ref|ZP_07597149.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|15074085|emb|CAC45732.1| Hypothetical, transmembrane protein [Sinorhizobium meliloti 1021]
 gi|306896473|gb|EFN27221.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti AK83]
 gi|306903931|gb|EFN34517.1| permease YjgP/YjgQ family protein [Sinorhizobium meliloti BL225C]
          Length = 360

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 119/355 (33%), Gaps = 14/355 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  +   R+     + I  + ++I   +  + +S+    +++  L ++ + IPT+
Sbjct: 4   NTLGRYFFKRYARTTFWFLVGIFALIFIIDFSELTSRMSNLPHYTVSGALLMTTFRIPTI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    ++P +  A+L  +   +  N 
Sbjct: 64  LQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALLFGVLAVVVINP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY---NPNNTLQGI-FIV 176
           +        + L A+     + +        ++ D     I      N    L  +  I 
Sbjct: 124 LAAWGTKKAEALEAEWGSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTVIH 183

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                       A+S  +        L +G V   + + +    M+        +     
Sbjct: 184 FDPQGAITLRQDAKSAKL---EDGYWLLNGVVE--TEVGRLPRRMETAQLRTNLKPDFVQ 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + KA+      L                   ++FH  ++  L  V   LI+   + K 
Sbjct: 239 ERLAKADSIQFFDLPR-KIEVARSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSLKF 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +   Q + +  I   +   F ++   + ++     +    P +  +L  + ++ L
Sbjct: 298 SRFNQSRSV--ILGGILSGFVLYVV-TVLVKAFGSSGIVPPFVAAWLPVVVAMAL 349


>gi|114766152|ref|ZP_01445156.1| permease, YjgP/YjgQ family protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114541612|gb|EAU44654.1| permease, YjgP/YjgQ family protein [Roseovarius sp. HTCC2601]
          Length = 364

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 128/354 (36%), Gaps = 23/354 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R     FL           ++ ++ ++    S   S   ++ ++   +P+ L 
Sbjct: 2   ILHRYFARRFLTMFLSILTVFALFLALLDLVDQLRRFGSD-VSFGQVVYLTLLNLPSGLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   M R++EL+++   G S +T +   + +A+++S       N I 
Sbjct: 61  EILPLVMILATAALFLMMARSSELVVVRAAGRSGLTALAGPVAVALVISGVSVAILNPIV 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYL--EENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
                    L+   +     +     E L+ R    + D  I+ ++ NP+ T L  + F+
Sbjct: 121 AATSRQSSDLTESYKSNGASTISIGREGLWLRQGGDEGDTVIRAARANPDATVLYEVSFV 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE-VHRKSPISKDISIMKFKSYTL--QTES 232
               ++   +   A+  ++     A +L D +    +S  S +    +F+   L      
Sbjct: 181 EYEAESGPLRRIEAEEAALQDG--AWVLRDAKAWPLQSGRSPEGMSERFERLELPSDLTQ 238

Query: 233 ANSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                   K +   +  L   +             +   + E    L + +F  +  ++ 
Sbjct: 239 DGIRDRFGKPSSVAIWDLPEFIEGLEMAGFSARRHVVWLQME----LARPVF--LVAMVL 292

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           + A       R  +    +  ++ + FG+++  ++    + +N    PIL  ++
Sbjct: 293 VAAGFTMRPARLGRTGLHVLAAVLLGFGLYYVRNF-AQIMGENGQLPPILAAWI 345


>gi|89070357|ref|ZP_01157664.1| putative permease [Oceanicola granulosus HTCC2516]
 gi|89044004|gb|EAR50179.1| putative permease [Oceanicola granulosus HTCC2516]
          Length = 366

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 134/366 (36%), Gaps = 16/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLN-ILLKISGYLIPTVL 61
               Y  R    SFL        +   + ++++ N VS    +    +L ++    P  L
Sbjct: 2   ILHRYFARRYLTSFLTVSGLFFVLLGAMDLVEQANEVSDEAAARWSDVLALTLLNAPASL 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS-RITLIKPVLFLAILLSIFLFISENI 120
             + P    + T  +   + R++EL++    G S    L+ PVL +A++ ++ L +   +
Sbjct: 62  YEILPLLVILSTIALFLGLARSSELVVTRAAGRSALHALVAPVLVVALIGAVALAVLNPL 121

Query: 121 IEPKCRSTIKQLSA-KAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-F 174
           +    +    ++SA + + A   S     L+ R    +    I+ ++ N + T L G+ F
Sbjct: 122 VAATSKEYEARVSALEDRGASIVSVDAGGLWLRQGGPEGQSVIRAARANTDGTELSGVTF 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--S 232
           I  + + +  +   A+   ++     ++              + +  +   Y + T   +
Sbjct: 182 ITFAEEGRPSRRIDARRARLEAGVWRLV-EAKSWPLGDAGVPEAAAEEHDVYEVATSLTA 240

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           A         +   +  L     +           ++      L +  F V   LI   A
Sbjct: 241 AQIRDSFGAPSSIPIWELPR-FIDRLQTAGFSARRHQVWLQTELAKPAFLVAMLLIG--A 297

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFCISSIF 350
           A      R  +      +++ +SFG+++  ++     E  Q P  +      L  I++  
Sbjct: 298 AFTMRHQRGGRTGLMALVAILLSFGLYFLRNFAQILGENGQIPVLLAAWAPPLAGIAASV 357

Query: 351 LLMIKK 356
            L++ K
Sbjct: 358 ALLLHK 363


>gi|320537761|ref|ZP_08037684.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
 gi|320145384|gb|EFW37077.1| hypothetical protein HMPREF9554_02438 [Treponema phagedenis F0421]
          Length = 356

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 125/359 (34%), Gaps = 15/359 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+    + L++ LF + +  +  +   +    ++   L  +L++  +  P  
Sbjct: 1   MKILQRYLLQIFFPTALVAILFFILLLEIGDLFANLPTYLTNGVGLAPILQVMYFYFPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P          + ++    EL  +  +G    TL+ P++ L  + S+ +F  E+ 
Sbjct: 61  ISFAMPLGVLFAGAYTMGTLYARNELTSVFASGMPIWTLVLPLVILGFIFSVGMFFFEDR 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY---NPNNTLQGIFIVD 177
           +    +    +L+AK  L         ++    +++  I  ++       N L    IV 
Sbjct: 121 VVIHTQYKKNRLTAKL-LETDKDLSTNDIVVLSENNKIIYSAEVYDAETKNLLNLQIIVR 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + D +  K+    +     +  A  L    V+  S   +    ++F    L  +    + 
Sbjct: 180 TDDGEIEKVVT--TAVAIWEGDAWELTKPAVYIFSKNGQ----IQFTD-KLAAKEFTEAP 232

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE----FHKRLTQWLFPVIFGLISIVAA 293
              + N  ++  L          + +      +E    +++R +      +    S+   
Sbjct: 233 ENFQRNITSIDELSVSEAATYIQKLKRTGRPYTEELAQYYRRFSFPFTIFLVLFFSVSVG 292

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            +         +    +  ++ +        +      +P    +L   +F   SIFLL
Sbjct: 293 GRFRKNILLMSLLFSLLIATVYYVTEMVTMLLAKWEYISPLAGALLPFLIFTSLSIFLL 351


>gi|85709345|ref|ZP_01040410.1| predicted permease [Erythrobacter sp. NAP1]
 gi|85688055|gb|EAQ28059.1| predicted permease [Erythrobacter sp. NAP1]
          Length = 365

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 109/312 (34%), Gaps = 11/312 (3%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAI 108
           ++K +   IP ++    P+   + T   L ++N+N+E++ +   G S   ++ P+L  A 
Sbjct: 57  IIKYASLRIPQLIARFLPYSVLLATLITLVTLNQNSEVVAMKAAGLSAHQVLAPLLLTAA 116

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF-SYLEENLFFRLDDDLYIKISKYNPN 167
           ++++  F     +  +  ST+K   A     +   S +  N++    D++    S     
Sbjct: 117 VVALISFAFNERVVTRANSTLKAWEAVEYGPIPEQSGVRANVYLTDGDNILTASSLIGSG 176

Query: 168 N--TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI--SIMKF 223
               L  +                 +G+         L + +       + +    ++  
Sbjct: 177 EDIELDNVTWYSRAPGGIISEQIKATGA-TYAAPGWRLENPKRFDVGSATTEPIDDVVVG 235

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
           +  T            +  + Q+   L +   +            R+++  RL+  L  +
Sbjct: 236 EGLT----PEQIDLQSVDPDAQSFWEL-SETIDAYEAAGRRTSEMRAKWWHRLSGPLSAL 290

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  L+  VAA   A   Q      I ++L  ++ V    +  +      P ++     F 
Sbjct: 291 LMPLLGSVAAFGLARSGQLFVRAVIGMALGFAYFVVDNAALAMGSFGGYPPFLAAWAPFF 350

Query: 344 FCISSIFLLMIK 355
             +     ++I+
Sbjct: 351 LFLLVGETVLIR 362


>gi|330993928|ref|ZP_08317858.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
 gi|329758874|gb|EGG75388.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
          Length = 371

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 114/365 (31%), Gaps = 26/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R    + L    F+  +  +   +  +  VS+      +++ +I+   IP   
Sbjct: 6   TLSLYIARQFTGATLAVIAFLTGLITMFDFIDLLRRVSTRPNVPTSLVSQIAFLHIPFAC 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  LEILPFGVLLGGILCFWRLARSSELVVARAAGISAWQFLAGPVICAVLIGAMATTCVSPL 125

Query: 122 EPKCRSTIKQLSAKAQLAL--TFSYLEENL--FFRLDDDLY------IKISK-YNPNNTL 170
                   + L  +           L        + D+ L       I   +       L
Sbjct: 126 SSVMYRRAEALDRQYLRDNNGKSLNLSGGTLWLRQGDNGLVDHGVDIIHARQVRLNGGVL 185

Query: 171 Q--GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
              GI I     D        AQSG +   R   IL    + R   +  D  + +F  + 
Sbjct: 186 HIGGITIFRLGPDDGLLTRIEAQSGYLGGGR--WILEGARMLRPDEMPSD--MGRFTLHA 241

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                A         +  ++  L  P      N        +R  F   LT  +      
Sbjct: 242 -DLTLAGVEESFASPDTLSVWAL--PGFIRQLNRSGFSTIRHRLHFQSLLTLPVLSGTMA 298

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++  A       R+   I  I   ++  F +F   S I  +  +     P+L  +    
Sbjct: 299 LVA--AGFSMRPARRGGVIRMISSGVAAGFALF-ALSKIAAQFGETGTLPPVLAAWAPTG 355

Query: 347 SSIFL 351
           + + L
Sbjct: 356 AGLCL 360


>gi|296114025|ref|YP_003627963.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|295921719|gb|ADG62070.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis RH4]
 gi|326566094|gb|EGE16251.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC1]
 gi|326572162|gb|EGE22158.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC7]
 gi|326573712|gb|EGE23670.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis O35E]
          Length = 369

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 115/368 (31%), Gaps = 16/368 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ + S T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +  ++EL+++   G S   ++   +  A++  +        + 
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVVISLGVNQFVL 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT 181
           P        + A        +           D+   + IS  +    L  +     +D 
Sbjct: 124 PTANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQLKDG 183

Query: 182 QTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTE 231
           Q      A+SG         ++  +         +      +  +     + K  TL   
Sbjct: 184 QLITALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTLPIA 243

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-- 289
             +   +  +  D +LS L        +     L    + F ++L      +   L++  
Sbjct: 244 PTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRHELA-FWQKLLSPFAVLSLVLVASS 302

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            V    R+     + +  +   L  S+         +     +P  + ++ + L  ++ +
Sbjct: 303 FVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVAL-ATGLSPLLMALVPIVLSAMAGM 361

Query: 350 FLLMIKKK 357
           +LL  K  
Sbjct: 362 YLLNRKSS 369


>gi|300690718|ref|YP_003751713.1| permease, predicted YjgP/YjgQ family [Ralstonia solanacearum PSI07]
 gi|299077778|emb|CBJ50416.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum PSI07]
          Length = 398

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 14/223 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 4   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 63  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRRALLSLFKIALPLALVTYVFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ T
Sbjct: 123 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 182

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
           ++ + + +   D +   I  AQ  S     Q   LND    R 
Sbjct: 183 IRNLRVYEFDADYRLSSIRVAQQASYQ-GHQRWELNDVTETRF 224


>gi|295134703|ref|YP_003585379.1| permease [Zunongwangia profunda SM-A87]
 gi|294982718|gb|ADF53183.1| permease [Zunongwangia profunda SM-A87]
          Length = 407

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 15/192 (7%)

Query: 75  NVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA 134
            V  S   N E   + ++G S    ++ +    +L+SI  F+  N + P     I  L  
Sbjct: 1   MVFGSFAENYEFAAMKSSGISLQRAMRGLTLFIVLVSITAFVFANNVIPAAEFKIINLRK 60

Query: 135 KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT--LQGIFIVDSRDTQTH-KIYYAQS 191
                     +   +F  +  ++ IK+ K + +N   L  + I    +      +  ++ 
Sbjct: 61  NIAKMKPAMAITAGVFNEV-GNINIKVDKKSGDNDQYLHDVIIHTGTERGGDYTVIKSKE 119

Query: 192 GSIDLDRQ----AIILNDGEVHRK-------SPISKDISIMKFKSYTLQTESANSSTIVL 240
           G +         +++L DG  +R+           K      F+ YT   + +  + + +
Sbjct: 120 GELVSSEGSNVLSLVLTDGNYYREVQPSDYSKRDHKPFMKSYFEEYTKNIDLSELNQVDM 179

Query: 241 KANDQNLSFLLN 252
                    +L 
Sbjct: 180 DDESYTTQSMLR 191



 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 7/131 (5%)

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNP---NPNNPNYRPELLETYRSEFHKRLTQ 278
            FK   L   ++N S  ++    +  +  ++               L  Y    H++   
Sbjct: 240 SFKHSILDNYNSNQSQRIVDDAIRTTNAAISHLSIKKQEFKQSSRRLNKYEIALHEKYVL 299

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            +  ++      V A   A++R+     P+ I++ I     +   +  +  E +    P 
Sbjct: 300 AVACIVLF---FVGAPLGAIIRKGGMGLPMVIAIIIFLSYHFIGIFAKNSAE-DGSISPF 355

Query: 339 LYLFLFCISSI 349
           +  +L  +  +
Sbjct: 356 IATWLSTLIML 366


>gi|255322347|ref|ZP_05363493.1| ribonuclease PH [Campylobacter showae RM3277]
 gi|255300720|gb|EET79991.1| ribonuclease PH [Campylobacter showae RM3277]
          Length = 341

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 133/357 (37%), Gaps = 29/357 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+      +F      +  I  ++  +Q   + S    +   L K+  +++P V
Sbjct: 1   MDRTARYLFSNFLGTFASLFATLFLIMSIVFFIQIARITSYIEITFIELFKLYMFMLPRV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +    +   ++R  E +++   G S + + K  L ++  +SIFL ++  I
Sbjct: 61  LLFTVPIAFFVSLALMFFRLSRENESIVLFTLGYSPVRIAKFFLIVSGAVSIFLIVTAII 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS--KYNPNNTL-QGIFIVD 177
           + P   + +       +  +    L+   F +   D  + I   K + N TL +G+ +  
Sbjct: 121 LIPTA-AELNSNFVSYKKTVAKLNLKTTEFGQKFSDWMVFIQNEKSDENGTLYEGVTLY- 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           S     H+   A++  +  +   +   L++G+++      +D S  K    T++  +A  
Sbjct: 179 SPKEGAHRFVLAKNARLTNNNAVLEFTLSEGKIY----DMRDASWHKTDFGTMKISTAQE 234

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            ++    +       ++ +      R +   TY           LFP+   L ++     
Sbjct: 235 DSVAQTKSFVQYWQAMSEDKK----RAKDFATYVL-------IALFPLATTLFALSLGI- 282

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
               R  K      I     FGV +G+  +I       +        LF I+SIF  
Sbjct: 283 -VTYRYEKGFVYFGI-----FGVLFGYFTLIMLFSSRVFIAIAAIFLLFFIASIFSF 333


>gi|149927924|ref|ZP_01916174.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
 gi|149823363|gb|EDM82596.1| YjgP/YjgQ like transporter [Limnobacter sp. MED105]
          Length = 401

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/376 (13%), Positives = 117/376 (31%), Gaps = 31/376 (8%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y    + ++     +  V +     ++  ++ +S    S           +P  +  + P
Sbjct: 14  YFRSELYKAISFVMVAFVGLFAFFDLIAEVDRLSLPGTSWFYYFVAVLLGLPARVYEIAP 73

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + +   L  +  ++EL  +   G S  +++K ++ +A  + +   +    + P   
Sbjct: 74  IAALIGSIYALVQLAASSELTAMRAAGLSTTSMLKMLVRIAAGVVVITVLFGEAVAPLAE 133

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLD--------DDLYIKISKYNPNNTLQGIFIVD- 177
                + AKA             + R             ++    +N +  L  +   + 
Sbjct: 134 RAAVPMRAKALGYEVDRDFRSGYWMRDTYSAPDAESRVRFVNFDSFNKDGELLKLEYYEL 193

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK----------SPISKDISIMKFKSY- 226
             +++      A+S   D D     L +  V R           +     I   +F+S  
Sbjct: 194 DPESRIRAWVRAESAKFDPDSGDWELRNVLVQRYFDEAVSNANAARAGLTIQASEFESLE 253

Query: 227 ----TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
               T        + + ++ +  +   L N +    +   +  +     F K++      
Sbjct: 254 TMRWTSNLSPELLTGLFVRPDRMSAWQLYNYSKF-LSSNLQATDNIDLAFAKKIMYPFAI 312

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPIL 339
           +I  +IS+  A      R       +F  + I  G       FS++       P+    L
Sbjct: 313 LIMMMISLPFA--YLHFRSGSVSVKVFAGVMIGVGFHLVNNLFSHLSMVASFPPFVSAAL 370

Query: 340 YLFL-FCISSIFLLMI 354
              L F +    L  +
Sbjct: 371 PSLLGFVVGMGALWWV 386


>gi|90419501|ref|ZP_01227411.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336438|gb|EAS50179.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 360

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 109/355 (30%), Gaps = 22/355 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R    SFL + L +  + ++I +++                  S   +P+ + 
Sbjct: 5   TLNRYFFRLYVVSFLSTLLTVFALIYLIDLIEVSRRSRFEDLGFGATALFSLLRVPSFIG 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              PF     +   L ++NR  EL++   +G S   ++ P +  + L+ I      N + 
Sbjct: 65  QAFPFIVLFSSIYTLLTLNRRLELVVARASGVSIWQILLPFVVGSFLIGIVATFVYNPLT 124

Query: 123 PKCRSTIKQLSAK-------AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
              ++  + +          +         +E    +              + T+ G   
Sbjct: 125 AYTKTLSEDMQTTMTAGGDVSSSDRVPWLRQEGDGIQSILG----AKTVARSGTVLGDIT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
               + +        +    L+ +  +L    V R     +         Y L T     
Sbjct: 181 AFVMNDEGIVKERIDAARAVLNDEYWLLEKPRVTRVGYRPEFPQ-----EYKLPTSLRPE 235

Query: 236 --STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                +      ++  L     +         + +R ++H  + Q    +   L++  A 
Sbjct: 236 YVEQRIADPEAISIWQL-GSKIDVAASLGFNTDAFRMQYHTLVAQPALFIAMTLLA--AT 292

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
                 R  +    I   +   F ++   +++   +  N    P++  +   +++
Sbjct: 293 VATRFSRTGQSGRTIAGGVMAGFVLYVV-TFLAKALGSNDVVPPVMAAWFPVLAA 346


>gi|187922983|ref|YP_001894625.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|296162275|ref|ZP_06845069.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
 gi|187714177|gb|ACD15401.1| permease YjgP/YjgQ family protein [Burkholderia phytofirmans PsJN]
 gi|295887429|gb|EFG67253.1| permease YjgP/YjgQ family protein [Burkholderia sp. Ch1-1]
          Length = 382

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 128/382 (33%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L +  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVLLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSID-LDRQAII-LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  A+SG         +  + D ++    P               
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +    Y+L++E +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFA--YLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKKKYT 359
           +       +  + L ++  K+ 
Sbjct: 359 LTAATP-GLVYLVLGLVGLKWV 379


>gi|28198044|ref|NP_778358.1| hypothetical protein PD0108 [Xylella fastidiosa Temecula1]
 gi|182680671|ref|YP_001828831.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|28056104|gb|AAO28007.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182630781|gb|ACB91557.1| permease YjgP/YjgQ family protein [Xylella fastidiosa M23]
 gi|307579132|gb|ADN63101.1| permease YjgP/YjgQ family protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 368

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 127/377 (33%), Gaps = 29/377 (7%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 1   MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR  L   V+ +  + +  + +
Sbjct: 61  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRLSLSVMMMIGMGTGLMVL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQ 171
           +   + P  ++    L A A+     +    + F+  + ++++        + +    + 
Sbjct: 121 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIM- 179

Query: 172 GIFIVDSR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + + D R              ++  ++  +   IL   +V R +   + +    F S  
Sbjct: 180 -LILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQ--QVQRDTFSERGVQRETFDSLP 236

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVI 284
            ++    +      A  +NLS   +    +  YR         +  ++  R   W +PV 
Sbjct: 237 WRSRLDPAVLAAGLAKPRNLSA--HELVQSIEYRRRNHLDARDFEGQYWSR---WFYPVN 291

Query: 285 FGLISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYL 341
              + + A      L+R        F+ +  +   FW       +I       Y     L
Sbjct: 292 VLALCLAAIPFSFGLLRSGGMGKRTFLGILFALS-FWMLQMFFERIASVLKLNYQIFYLL 350

Query: 342 FLFCISSIFLLMIKKKY 358
               +      + ++++
Sbjct: 351 PPMVMLCGSYWLFRRQH 367


>gi|148244955|ref|YP_001219649.1| permease [Candidatus Vesicomyosocius okutanii HA]
 gi|146326782|dbj|BAF61925.1| permease [Candidatus Vesicomyosocius okutanii HA]
          Length = 360

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 127/322 (39%), Gaps = 13/322 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK   LYI++ +    L+  L  + +      L  +  +     ++    K     IP V
Sbjct: 1   MKILTLYIVKTMAFYTLIVMLVWIGVYSFFNFLDEVKFIGQYNYTVFEATKYIILNIPAV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   +     + +   LT++   ++L+II ++G S + +   V+++A++    + +   +
Sbjct: 61  MYSHSSVIILLGSLLALTNLASTSQLVIIRSSGVSIMQISNIVVWVALMFIAIIILIGEL 120

Query: 121 IEPKCRSTIKQLSAKA-QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           + P      + L +KA +  +T    +E  F+  D+ L+I + K     + Q I  +  R
Sbjct: 121 VAPITTEYAECLRSKALEQNMTCRNQQE--FWLKDNGLFIHVKKDFDAKSFQDITFIKLR 178

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK---FKSYTLQTESANS 235
                  I Y+ + + + +   +   +  +H +   + +++      F+ Y++Q      
Sbjct: 179 APGVLDSIIYSDNATFNGNNLEL---NKPIHYQLSKNGELTTFSKNYFEKYSVQISFNQK 235

Query: 236 STIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               LK + + LS + L    +       + +    E +KR    +   +  +I      
Sbjct: 236 LIKNLKKDPRKLSTWHLYKQMSFLTNNNLVADIVEIEIYKRFMMPVT--LVAMILFSMLF 293

Query: 295 KRALVRQRKKIHPIFISLSISF 316
               +R       IF+ L +S 
Sbjct: 294 VFGSLRDASLGKKIFLGLMMSL 315


>gi|163792837|ref|ZP_02186813.1| Predicted permease [alpha proteobacterium BAL199]
 gi|159181483|gb|EDP65995.1| Predicted permease [alpha proteobacterium BAL199]
          Length = 365

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 98/333 (29%), Gaps = 31/333 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   YI R      L +   I+ I +++ +++ +   S        +L++++   +P + 
Sbjct: 6   TLSTYIGRQFVFWVLGTFAAIMAIVFLLDLIELLRRGSGKDGAHFGVLVEMAALKLPNMG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF     +    T + R  EL++    G S    + P + +A+LL        N I
Sbjct: 66  QQILPFAVLFGSMLAFTRLTRTNELVVARAAGISVWQFLMPAIAVALLLGALKVGVVNPI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS------------KYNPNNT 169
                +    L          S++           L+I+                  +  
Sbjct: 126 SSVMTARFNVLEDTILRNRVDSFMTVGQ-----GGLWIRERTESGQHVVHALAARQNDAE 180

Query: 170 LQGIF-IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
           L  +  I    + +  +   A++  +        L+D  V   + +              
Sbjct: 181 LANVLVIRFGHNDEFLERIDARTARL--GAGYWELHDTVV---TSVKGRPDQRGSIRIPT 235

Query: 229 QTESANSSTIVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           +    N           +   L        N  +       Y    H  L   L  +   
Sbjct: 236 RLTIQNIQDSFASPETMSFWELPGFIRILENAGFSAVKHRLYW---HALLASPLLLIAMV 292

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVF 319
           LI+  A     L R+   +      L   F ++
Sbjct: 293 LIA--ATFSLRLTRRGGTLLWASSGLFTGFLLY 323


>gi|296125162|ref|YP_003632414.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
 gi|296016978|gb|ADG70215.1| permease YjgP/YjgQ family protein [Brachyspira murdochii DSM 12563]
          Length = 356

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 114/356 (32%), Gaps = 8/356 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F  S L  V +  +  +  R++  +   E +N  +       P  
Sbjct: 1   MKKLNAYLLKEFLSFFFGSLLLFVVLVTIADLSSRLSFYTEHPELINYFITYHLARAPHN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P      +T VL +  +N E+L I+N+G S      P+  + I+L + L      
Sbjct: 61  TYYIFPVALMFASTYVLGTFVKNKEMLAIENSGISLFKFSMPMFVIVIMLCLILVFFWQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQG-IFIVDSR 179
           +           +   +     S       F  ++ LY   + +     +   I +  + 
Sbjct: 121 VAAPLNKVSFAANDAMRGNKQASKSGPWQLFGGNNYLYFIDTYFYQEQYMTNTILLKMND 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
           D        +     + D +   + +G +   S  +K+I + +  +Y L           
Sbjct: 181 DGGIKFRISSPYIQWNNDDKKWYVKNGILTTFS-ENKEIEVKEINNYPLDVLERPEHFYG 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               D                         ++ H R++   +     +I ++A+      
Sbjct: 240 RPLLDSMSLTEEAHIIKLQKEVNMNTSRLETDLHYRIS---YCFSGFIIVLLASLFSKFS 296

Query: 300 RQRKKIHPIFISLSISFGVF---WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
            Q   +  + + + ++   +     F  +      NP+    +   +F I  I   
Sbjct: 297 TQSVLVVSLVMVIIVALLYYSILMIFRSMGEAGNMNPFIAAWMPNIIFAILCILAF 352


>gi|126663512|ref|ZP_01734509.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
 gi|126624460|gb|EAZ95151.1| hypothetical protein FBBAL38_09189 [Flavobacteria bacterium BAL38]
          Length = 156

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YIL+    +F +  +  + I   I + +++N +      L  +L   G      
Sbjct: 1   MKIIDKYILKRYLVTFSVMLIMFIPIGITIDVSEKVNKMIEKKIPLTDILVYYGDFTVYF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             ++ P    +      + +  NTE++ I ++G S    ++P ++ A+++SIF  +    
Sbjct: 61  ANLLFPIFLFLSIIWFTSKLANNTEIIAILSSGISFARFLRPFIYGAVIVSIFALLMGFF 120

Query: 121 IEPKCRSTIKQLSAK 135
           + P+          +
Sbjct: 121 LIPQASKGFNDFRYQ 135


>gi|237751254|ref|ZP_04581734.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229372620|gb|EEO23011.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 342

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 97/242 (40%), Gaps = 7/242 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+LR IG  F      + FIA +I +L    L +    S+  L+++  Y IP    
Sbjct: 5   LLKKYVLRSIGEMFFPFFFVLFFIASIILLLNIAMLTNGVKLSMIDLMQLYLYGIPANTF 64

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V    F       L+ ++  +E+L+  + G S   +I+ +L L +L+S  L +   ++ 
Sbjct: 65  FVIALTFYSACILGLSKLSYESEMLVFFSLGVSPKDIIRILLPLCVLVSFVLCMFSFVMT 124

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-DSRDT 181
           P  +   K   +  +       L+   F +   D  + I   +  N   G+ +  ++ + 
Sbjct: 125 PNSKQAYKDFIS-LKKNEINIDLKPGDFGQKIGDWLVYIDSKDK-NVFHGLVLYANTTEQ 182

Query: 182 QTHKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                  A++G I+  +    ++L DG+ +        +  ++FK   ++     +    
Sbjct: 183 IKDNFIIAKTGKIENRQGILELVLYDGDAYFNDKDF--LQKIEFKEMIVRNFLDGTQDSD 240

Query: 240 LK 241
             
Sbjct: 241 YN 242


>gi|92115032|ref|YP_574960.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
 gi|91798122|gb|ABE60261.1| permease YjgP/YjgQ [Chromohalobacter salexigens DSM 3043]
          Length = 354

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 104/362 (28%), Gaps = 24/362 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+ YI R +  + L+  + I+ +  VI  +  +  V     +L++LL      +P    
Sbjct: 5   RFDRYIARNVLAAMLVVQVMILGLDLVISYINDLGDVEGDYGALDVLL-YLLMRLPWRFY 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L SM  + EL ++  +G S   ++   +    L+ I        + 
Sbjct: 64  QYAPVGVLIGALIGLGSMASSNELTVMRASGRSLARILWGAMKPLGLVIIVTMAISEWVS 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P      +    +          E   + R  DD Y +      ++ +  +       TQ
Sbjct: 124 PVTEQYAEAWRLEQLEGEGAILSERGGWQREGDDFY-RFGTIRADDVVIDVTRYHFDGTQ 182

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                +A            +  DG     +  +            + ++   +       
Sbjct: 183 LVSATHADRA---------VWEDGSWQWVNVDTTRFED---GRTVVDSQPRQAWETSFTP 230

Query: 243 ND--QNLSFLLNPNPNNPNYRPELLETYRSE-------FHKRLTQWLFPVIFGLISIVAA 293
               + L  L + +P++       L     E       F +++          L++    
Sbjct: 231 AQLNRLLRPLESQSPSDLWRYASYLGNQGLEATQPLLYFWQKMLLPFTLAGLMLVAASFV 290

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLL 352
                           I + +SF                +P +  ++      +  I LL
Sbjct: 291 FGPLRTVAAGTRVFYGIIVGVSFKYLQDLLAPASMLFGFSPIFAVLVPTVACYVLGIVLL 350

Query: 353 MI 354
             
Sbjct: 351 RR 352


>gi|254428344|ref|ZP_05042051.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
 gi|196194513|gb|EDX89472.1| putative permease, YjgP/YjgQ family [Alcanivorax sp. DG881]
          Length = 353

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 108/365 (29%), Gaps = 21/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y  R +    L     IV +  +   +  +  +  + + +   L+      P  
Sbjct: 1   MTLLKRYFWRAVMIPTLAILFIIVGLDCLFGFVYELEFLRGNYQVMEA-LQFILTTTPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    + T   L  +  + EL +I   G S + +   VL   ++L I        
Sbjct: 60  FYEYMPMAILLGTLIGLGLLANSGELSVIRAAGVSTLKVSWLVLRPVLVLIILSIPLGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   + A+        +   + R   + +I I+   PN  L G+      D
Sbjct: 120 LTPYSEQVAQSNRSMAEGGGEALRSKYGYWHREGPE-FIHINAVQPNGVLHGLTRYRFSD 178

Query: 181 TQT-HKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            Q   +  Y        D  ++       L D           +    +     L     
Sbjct: 179 NQKLTETQYVDRAIYQGDFWSLEGIHGTRLFDDHAETYQKDQGE-WQTELTPQLLSIVVL 237

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IV 291
               + L    +   +L        +Y           F ++L   L  +   LI+   V
Sbjct: 238 QPDNLALVKLLEYTRYLKRQGLETADYMLS--------FWQKLFMPLATIGMVLIAISFV 289

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               R +    +    I   L   +G  + F  +      +P    +L   L  +  ++L
Sbjct: 290 FGPLREVTMGLRLTAGIVAGLIFHYGQQF-FGQLSLVFHTDPLLAAMLPPSLCLVLGVWL 348

Query: 352 LMIKK 356
           L   +
Sbjct: 349 LQRVR 353


>gi|91782194|ref|YP_557400.1| membrane protein, YjgP/YjgQ like [Burkholderia xenovorans LB400]
 gi|91686148|gb|ABE29348.1| membrane protein, YjgP/YjgQ like protein [Burkholderia xenovorans
           LB400]
          Length = 382

 Score = 84.6 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 128/382 (33%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L +  ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQSLRSLLKIGIPLVLLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  E  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFESGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSID-LDRQAII-LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  A+SG         +  + D ++    P               
Sbjct: 181 NVRIYEFDSKFRLSNVRTAKSGKYQPPGHWQLTGVTDTQLIDVPPPPGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +    Y+L++E +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KEVAVPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFA--YLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKKKYT 359
           +       +  + L ++  K+ 
Sbjct: 359 LTAATP-GLVYLVLGLVGLKWV 379


>gi|103487658|ref|YP_617219.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
 gi|98977735|gb|ABF53886.1| permease YjgP/YjgQ [Sphingopyxis alaskensis RB2256]
          Length = 366

 Score = 84.2 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 130/359 (36%), Gaps = 30/359 (8%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI-------LLKISGYLIPTVLPMV 64
           +GR FL     I+F   +  ILQ ++L+  S + L +       + +  G  +P ++   
Sbjct: 16  VGRLFLFRTFAILFALVL--ILQTLDLLGESGKILAVPGNGDSDVWRYVGMRMPQIIETF 73

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            PF   + T   + ++N+N+E++ +   G S   ++ P+   A+L++   F     I  +
Sbjct: 74  LPFSVLLGTILTMVTLNQNSEVVAMKAAGMSAHQVLAPLFLAALLVAGISFAFNERIVTR 133

Query: 125 CRSTIKQLS-AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIVDSRD 180
             + +      + +     S +  N++ R  DDL I       +     L+G+ I +   
Sbjct: 134 STAALGAWQKVEYKRVPVDSGVRSNIWVRDGDDL-INAETVETSGPAVVLRGVTIYERTR 192

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                +  A S           + +     +   + +              + N      
Sbjct: 193 GVLSSMLSADSARALPGG-GWEMANARRFSRRSGTLEP-------LGTIVAAPNVRPDQF 244

Query: 241 KANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
              D +   L    L    ++       ++  +     +++  L  ++  L+  VAA   
Sbjct: 245 TLADVDGDELPFLKLKAAIDDLEAAGRPVDALKGVLWHKISGPLSAILMPLLGAVAAFG- 303

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMI 354
            L R  K      I +++ F  F   ++ +  +     Y P L  +  F + ++   MI
Sbjct: 304 -LARSGKLFVRAIIGMALGFAYFVADNFAL-AMGDLGAYSPFLAAWGPFILFALIGEMI 360


>gi|190572728|ref|YP_001970573.1| putative transmembrane permease [Stenotrophomonas maltophilia
           K279a]
 gi|190010650|emb|CAQ44259.1| putative transmembrane permease protein [Stenotrophomonas
           maltophilia K279a]
          Length = 368

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 116/369 (31%), Gaps = 23/369 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+LY+ + +  + L++   +V +  V+        +  +  +L        Y +P    
Sbjct: 7   RFDLYLGQSVFTTVLLTWAVLVGLDVVMAFSGEFKDIGKNGYTLGHAAAWVLYTVPRRAY 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +     L  +   +EL  +   G SR  L   V     LL+  + +S   + 
Sbjct: 67  TMFPTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAETLG 126

Query: 123 PKCRSTIKQLSAKAQ-------LALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIF 174
           P  +     L + A+          +  +  E   F          +        L+ + 
Sbjct: 127 PWGQDRADALKSSAKWGRDISTTRYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILRDVR 186

Query: 175 IV----DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           +     D R         A+      DR   +L           S     +  + +  + 
Sbjct: 187 LYRIAEDGRIASLTHADTAEH-----DRDGWVLTGVRRDTFGERSATREEVAREPWNSKL 241

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           ++   +T + K  + +++ L   +             Y   +  R   W +PV    + +
Sbjct: 242 DAGALATGIAKPRNLSVAEL-RTSIEYRERNGLDARDYEDVYWSR---WFYPVNVLALCL 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISS 348
            A       +R       +F+ +  + G +    +         +   I Y L    + +
Sbjct: 298 AAVPFAFGSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLA 357

Query: 349 IFLLMIKKK 357
           I  L+ ++K
Sbjct: 358 ISGLLFRRK 366


>gi|257461390|ref|ZP_05626486.1| ribonuclease PH [Campylobacter gracilis RM3268]
 gi|257441113|gb|EEV16260.1| ribonuclease PH [Campylobacter gracilis RM3268]
          Length = 343

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 100/243 (41%), Gaps = 15/243 (6%)

Query: 1   MKSFELYILRCIGRSF---LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M   + Y+      SF     +   I+ I + +QI +  + +     + + L+K+  +++
Sbjct: 1   MDRVQRYLFSNFVGSFASLFSTLFIIMSIVFFLQIARITSFIE---INFSELVKLYLFML 57

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L    P  F +  +  L  +++  E ++I   G +   ++      A L S+ L   
Sbjct: 58  PRILIFTVPIAFFVALSISLFRLSKENETIVIFTIGYATRKIVLFFGISAALCSLALLFV 117

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT---LQGIF 174
              + P     +K      +       ++ N F +   D  + I     N T    + + 
Sbjct: 118 SLFMMPIA-ENLKDNFIDYKKISATLNIKSNEFGQKFSDWLVFIDSQENNGTSTLYKDLV 176

Query: 175 IVDSRDTQTH-KIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           + +   +Q H ++  A+SG    +  +   +L+DG+++        +S  +F+S TL+T+
Sbjct: 177 LYNPGGSQDHERMIVARSGEFKNENASFSAMLHDGKIYTMGGDQWHVS--EFESLTLRTQ 234

Query: 232 SAN 234
           S  
Sbjct: 235 SDR 237


>gi|253827767|ref|ZP_04870652.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511173|gb|EES89832.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 314

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 112/316 (35%), Gaps = 20/316 (6%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           S   LL +  Y +P ++  V P  F +  T  L+ ++ + EL ++   G +   +IK   
Sbjct: 17  SFFELLSLYFYTLPLMIFFVIPLSFFVACTLSLSRLSFDYELPVLFALGMNPSKIIKIFF 76

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY 164
            +A L+S  LFI   ++ P   +  +Q   + +       L+   F +   D  + + K 
Sbjct: 77  PIAALVSFSLFILSLVLTPLSDTAYRQFLEE-RKNSININLQAGEFGQKLGDWLVYVQKS 135

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMK 222
             +++ + I ++     +   + ++ +  I      +  IL  G ++R  P    +  + 
Sbjct: 136 KEDSSYENIVLLSF--AKEGGMIFSDNAKIVNQMGVMEAILEKGSIYR--PKEDFVEKIL 191

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F +  +++       + L             +      R   +    S F       L  
Sbjct: 192 FDTLIIRSSITAIDEVDLGVIGYWKRAFYENDRQKKTLRNLSMYVMMSCF------PLVS 245

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           + F    ++        +    +  + +      G+F+   Y+               ++
Sbjct: 246 LFFF--PLLGVKNPRYQKNYTILQAMGV-----IGIFYALMYLFASYLPLLGMFIFPIIW 298

Query: 343 LFCISSIFLLMIKKKY 358
           L     +F  +IKK Y
Sbjct: 299 LLLGYLLFERVIKKYY 314


>gi|58580459|ref|YP_199475.1| hypothetical protein XOO0836 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425053|gb|AAW74090.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 396

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 113/366 (30%), Gaps = 21/366 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 37  DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTL 96

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 97  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 156

Query: 125 CRSTIKQLSAKAQ--LALTFSY-----LEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            ++    L A A+    +  S        E   F          +   +    L  + + 
Sbjct: 157 AQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLY 216

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             DS        Y A        R  +     +V R +   + +    F     Q++   
Sbjct: 217 HLDSSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQLNP 271

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     A  +NLS   L  +    +        Y  ++  R   W +P+    + + A 
Sbjct: 272 AALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSR---WFYPLNVLALCMAAI 328

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFL 351
                 +R       +F+ +  + G +    +           Y     L    +  +  
Sbjct: 329 PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSA 388

Query: 352 LMIKKK 357
            + +++
Sbjct: 389 WLFRRR 394


>gi|150395988|ref|YP_001326455.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
 gi|150027503|gb|ABR59620.1| permease YjgP/YjgQ family protein [Sinorhizobium medicae WSM419]
          Length = 360

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 118/357 (33%), Gaps = 18/357 (5%)

Query: 2   KSFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
            +   Y  +   R+   FL+    ++FI    ++  R++ +   T S    L ++ + IP
Sbjct: 4   NTLGRYFFKRYARTTFWFLIGIFALIFIIDFSELTSRMSNLPHYTVSGA--LLMTTFRIP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           T+L    PF         L S+NR  EL++    G S    ++P +  A++      +  
Sbjct: 62  TILQQTVPFVALFAAMAALISLNRRYELVVTRAAGISVWQFLRPFVVGALIFGALAVVVI 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY---NPNNTLQGI-F 174
           N +        + L A+     + +        ++ D     I      N    L  +  
Sbjct: 122 NPLAAWGTKKAEALEAEWGSTRSAAANSIPWLRQIYDGTDTIIGARSVQNGGTELINVTV 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I             A+S  +        L +G V   + + +    M+            
Sbjct: 182 IHFDPQGAITLRQDAKSAKL---EDGYWLLNGVVE--TEVGRLPRRMETAQLRTNLRPDF 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               + KA+      L                   ++FH  ++  L  V   LI+   + 
Sbjct: 237 VQERLAKADSIQFFDLPR-KIEVARSFGFSTNGLETQFHSLMSLPLLLVAMTLIAACVSL 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           K +   Q + +  I   +   F ++   + +I     +    P +  +L  + ++ L
Sbjct: 296 KFSRFNQSRSV--ILGGILSGFVLYVV-TVLIKAFGSSGIVPPFVAAWLPVVVAMAL 349


>gi|209885475|ref|YP_002289332.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
 gi|209873671|gb|ACI93467.1| permease YjgP/YjgQ [Oligotropha carboxidovorans OM5]
          Length = 364

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 129/361 (35%), Gaps = 21/361 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLV--SSSTESLNILL--KISGYLI 57
            +   Y  R      + SC   + I  ++ ++  I +V  +SS  + +  +  + S + +
Sbjct: 8   TTLARYFARRFI---VASCAVFLGIFLLLVLVDYIEMVRRTSSIPTASAFMVAQTSLFRV 64

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + PFC  +   +   +++R+ EL++    G S    I P L  A+++ I   ++
Sbjct: 65  PQLLERLMPFCILIGAMSCYLALSRSLELVVARAAGISAWQFITPALVSALVMGILATVA 124

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD-DDLYIKISKYNPNN--TLQGIF 174
            N I    +   K++ A+         + ++   ++  +   I  +  + N    L G+ 
Sbjct: 125 YNPISAAMQERSKEMEAQLFSNGGVQDVAQSWINQVTSEGQSIISAALSQNQGTRLSGVT 184

Query: 175 IV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +   + D        A+  +++  +    L    ++  +        +   S+ L T   
Sbjct: 185 VFRFNPDGSFRDRIDARDANLEPGQ--WRLGGARIYSMTAAP-----IPHDSFLLSTNLT 237

Query: 234 NSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            S      A  + +SF   P    +          YR ++ K L +    ++  ++ + A
Sbjct: 238 PSQVRNSFATPETVSFWQLPEYIRSSQSSGLATAGYRLQYQKLLARPF--LLASMVLVAA 295

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           A      R       +   ++  F ++          +    +         C+  +   
Sbjct: 296 AVSLRFFRFGGVQKMVLSGVAAGFLLYVLSKVTEDLSKAELMHPLAAAWLPVCVGGLIGF 355

Query: 353 M 353
           +
Sbjct: 356 L 356


>gi|329850878|ref|ZP_08265723.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
 gi|328841193|gb|EGF90764.1| hypothetical protein ABI_37970 [Asticcacaulis biprosthecum C19]
          Length = 380

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 119/364 (32%), Gaps = 20/364 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
              E YIL+     F  + + +  +  +I  ++    V++        +L +     P+ 
Sbjct: 19  SRLETYILQTCVAMFASALMVVSALILLINYVEISRSVAARADLGGLEVLVMLFQRSPSA 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++ PF F   +     ++NR +EL+ +   G S    + P    A    I      N 
Sbjct: 79  ILILLPFAFLFGSLFAFVNLNRRSELIAMRAAGVSAWRFVLPATVSAFAFGILTIGVLNP 138

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN----NTLQGI--- 173
           +    +   ++    A+        E     + D D  + I            L+G+   
Sbjct: 139 VASHLQDVYERKVVAAEAFAPTDPAEAIYLRQGDSDRQVVIRADGQASAQIGHLRGVTFW 198

Query: 174 -FIVDSRD-TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            F  D R      +   A+   +     +  L D   +     ++  +++     TL + 
Sbjct: 199 IFTTDRRGAPSFIERVDAREAILRPG--SWQLKDAREYTLDKPAQFYNVL-----TLSSN 251

Query: 232 SANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                     A+ Q++ F   P              +Y  + H+ L+  L  +   + ++
Sbjct: 252 LDPQKAFKRYASTQSVPFWRLPGLIRQNQISGFSTTSYELKLHQLLSTPL--MFAAMTAL 309

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A     L+R       +   +S+ F +F+         + +     +       ++ + 
Sbjct: 310 GAVFSLRLMRLGGLTILVTSGVSLGFVIFFVNQLFASMGKADVIPAALAGWSPAVLAMLG 369

Query: 351 LLMI 354
            + +
Sbjct: 370 AMTL 373


>gi|326559486|gb|EGE09909.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 7169]
 gi|326568201|gb|EGE18283.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis BC8]
          Length = 369

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 114/368 (30%), Gaps = 16/368 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ + S T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +  ++EL+++   G S   ++   +  A++           + 
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVL 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT 181
           P        + A        +           D+   + IS  +    L  +     +D 
Sbjct: 124 PTANQHAAAIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQLKDG 183

Query: 182 QTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTE 231
           Q      A+SG         ++  +         +      +  +     + K  TL   
Sbjct: 184 QLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTLPIA 243

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-- 289
             +   +  +  D +LS L        +     L    + F ++L      +   L++  
Sbjct: 244 PTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRHELA-FWQKLLSPFAVLSLVLVASS 302

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            V    R+     + +  +   L  S+         +     +P  + ++ + L  ++ +
Sbjct: 303 FVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVAL-ATGLSPLLMALVPIVLSAMAGM 361

Query: 350 FLLMIKKK 357
           +LL  K  
Sbjct: 362 YLLNRKSS 369


>gi|326567797|gb|EGE17901.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 12P80B1]
          Length = 369

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 114/368 (30%), Gaps = 16/368 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ + S T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +  ++EL+++   G S   ++   +  A++           + 
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVL 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDSRDT 181
           P        + A        +           D+   + IS  +    L  +     +D 
Sbjct: 124 PTANQHAATIRADTIYDKLITIDGYWSVNHDGDNQDVVYISYADNEGGLGEVKRYQLKDG 183

Query: 182 QTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTE 231
           Q      A+SG         ++  +         +      +  +     + K  TL   
Sbjct: 184 QLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTLPIA 243

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS-- 289
             +   +  +  D +LS L        +     L    + F ++L      +   L++  
Sbjct: 244 PTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRHELA-FWQKLLSPFAVLSLVLVASS 302

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
            V    R+     + +  +   L  S+         +     +P  + ++ + L  ++ +
Sbjct: 303 FVFGSLRSQGLALRVVLALLTGLLFSYLTDLTGFVAL-ATGLSPLLMALVPIVLSAMAGM 361

Query: 350 FLLMIKKK 357
           +LL  K  
Sbjct: 362 YLLNRKSS 369


>gi|213423382|ref|ZP_03356370.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 207

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 82/208 (39%), Gaps = 12/208 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-- 176
             + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L GI I   
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELAGISIYAF 180

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIIL 203
            D R  +   + YA S   D + +   L
Sbjct: 181 NDQR--RLQSVRYAASAKFDPEHKVWRL 206


>gi|297624271|ref|YP_003705705.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
 gi|297165451|gb|ADI15162.1| permease YjgP/YjgQ family protein [Truepera radiovictrix DSM 17093]
          Length = 359

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 101/289 (34%), Gaps = 22/289 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQR--INLVSSSTESLNILLKISGYLIPT 59
           + F LY++R I   +      ++ +     +L    +    +      ++ +   Y IP+
Sbjct: 3   RRFSLYLVREILPLYAAGLTALLILLLGAFLLLEGVLADAVARGVGPALVARFLLYSIPS 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              M  P          +T +++++E+      G S    + P+L L +L+S   FI+  
Sbjct: 63  AAAMGLPLALLFAALLGITRLSQDSEIKAGLLLGLSPRQFLTPILLLGLLVSTVSFINNE 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           ++ P      ++      +    + +E   FF       + +    P   ++ + ++   
Sbjct: 123 LLAPWSYRRAQEALKDILVQSPETLIEAGSFFTDALGRSVYLGSIAPGGVVRDVTVIQPG 182

Query: 180 DTQTHK-IYYAQSGSIDLDRQAIILN--------DGEVHRKSPISKDISIMKFKSYTLQT 230
            T     +  A+SG +D       LN        DG V   +P  + +  ++     L  
Sbjct: 183 GTAGPSEVIRAESGVLDEAAGVWRLNGIRMLRYRDGRVVLDAPADEALLPVR----GLSA 238

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            S+    +      +  + L   NP +            +  H++  + 
Sbjct: 239 SSSTPPELTRLPLRELFARLRGTNPQDAPAE-------WTALHRKFAEP 280


>gi|194290553|ref|YP_002006460.1| permease, yjgp/yjgq family [Cupriavidus taiwanensis LMG 19424]
 gi|193224388|emb|CAQ70399.1| putative permease, YjgP/YjgQ family [Cupriavidus taiwanensis LMG
           19424]
          Length = 392

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 131/382 (34%), Gaps = 44/382 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ +E Y  R +   F      ++ +     +L  +  V++   SL  L  +     PT 
Sbjct: 4   LRVYERYFGRLVYGVFAFILFAVLSLFVFFDMLNELENVNAQYTSLVALFHVL-LQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L++  FI    
Sbjct: 63  VYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLALVTFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---------LYIKISKYNPNNTLQ 171
           I P+     +++  +A  A   S     ++ +  D           ++ ++   P+ T+ 
Sbjct: 123 IGPRAEQYAQKVKLEAIGATVSSGFRSGVWVKDRDKDPAGDGEITRFVNVAGLRPDQTIT 182

Query: 172 GIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------- 216
           GI + +     +   I  AQ G      Q+  L +    R   ++               
Sbjct: 183 GITMYEFDPQYRLRVIRVAQEGRYQ-GGQSWELQNVSETRFVELAPHAQGAQPAAATPPR 241

Query: 217 -------DISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
                      +KF    + +E +    +++L   ++  +  L     +     +  + Y
Sbjct: 242 DALAPDFRAEQVKFPRVAMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQRY 301

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
              F K++   L   +   +++  A                + + +  G+  G S+  H 
Sbjct: 302 EIAFWKKVIYPLTLFVMVALALPFAYL--------HARAGAVGVKVFGGIMLGLSF--HL 351

Query: 329 IEQNPYYIPILYLFLFCISSIF 350
                 ++ +L+ +   IS++ 
Sbjct: 352 SNTLFSHVGLLHTWPPIISALV 373


>gi|329114151|ref|ZP_08242913.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
           pomorum DM001]
 gi|326696227|gb|EGE47906.1| Lipopolysaccharide export system permease protein LptG [Acetobacter
           pomorum DM001]
          Length = 370

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 111/365 (30%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    S +     +  I  +   +  +  V++    S N++ +I+   +P   
Sbjct: 6   TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGALFTTLISPV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL---------EENLFFRLDDDLYIKISKYN-PNNTLQ 171
                   ++L  +                   + +  +       +        +  L+
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                +F +D +D +      A  G +       IL+D  V R + +   +  +      
Sbjct: 186 IRNVSVFRLDHQD-KLMMRIEAPEGYL--GTLKWILSDASVVRPNDLLHHVGQI---DLP 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFG 286
                             ++  L  P   +   R       +R  F   L   +      
Sbjct: 240 TDLTVNRVQESFSSPETLSVWAL--PGFISLLDRSGFSSIRHRIHFQSLLALPMLAGTMA 297

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++  A       R+      I   ++  F +F   S +  +   +    P+L  +   +
Sbjct: 298 LVA--AGFSMRPSRRGGVARMIGSGVAAGFLLFTV-SKVAEQFGNSGALPPMLAAWAPTL 354

Query: 347 SSIFL 351
           + + L
Sbjct: 355 AGLCL 359


>gi|312795336|ref|YP_004028258.1| hypothetical protein RBRH_03152 [Burkholderia rhizoxinica HKI 454]
 gi|312167111|emb|CBW74114.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 382

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 133/383 (34%), Gaps = 28/383 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y+ + +  +F         + +   ++  +N V       +  +       P+ 
Sbjct: 1   MRLYERYLAKQVYLTFAFILFAFSGLFFFFDLISELNAVGHGNYKFSYAVLRVMLQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  ++E  I   +G S    +  +L + + + +  F+   I
Sbjct: 61  FYEIIPVAALISAIYVFAQMAASSEFTIFRVSGLSTHRALGSLLKIGVPIVVLTFVIGEI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR---LDDDLY------IKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +     +         + + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTVPGNGATAQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISKDIS--------- 219
            + I +     +   +  AQSG      Q ++  + + ++H  +P +             
Sbjct: 181 NVRIYEFDSQFRLADVRTAQSGRYMRPGQWLLKGVTETQLHDVAPAAATAKDVLNPVYKS 240

Query: 220 -IMKFKSYTLQTESANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
             +    Y +++E      S +++  +  +++ L +    +     +  + Y     +++
Sbjct: 241 AQVSMPEYPMRSELTPQILSVLLVAPDRMSMTNLFS-YVQHLRENHQDAQRYVIALWRKV 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                 ++  ++S+  A                I L +SF +F      I  +  N +  
Sbjct: 300 LYPFAVLVMLVLSLPFAYLHTRAGVVGVKVFGGIMLGMSFQLFNTLFSHIGTL--NTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKKKYT 359
           P+       +  + L +   ++ 
Sbjct: 358 PLTAATP-GLIYLALGLFALRWA 379


>gi|170743204|ref|YP_001771859.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
 gi|168197478|gb|ACA19425.1| permease YjgP/YjgQ family protein [Methylobacterium sp. 4-46]
          Length = 362

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 120/355 (33%), Gaps = 18/355 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI     R      L +  + + +  ++ +     +   S   +  +S    P V 
Sbjct: 6   TLGRYIAARFLRMIAGVFLTVFALVYTLDFVELMRRAGEAPGASALTVAHLSLLRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L  ++R  EL++    G S    ++P + +A+ +   +  + N +
Sbjct: 66  EQIMPFAILFGAMGALLQLSRKLELVVARAAGISAWQFLQPGVLVAVGIGALMVGAYNPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                +++KQ S + +  +     +      L +DL+I+    +    ++    ++   +
Sbjct: 126 A----ASLKQRSTQVEARIFARSTKGG----LSNDLWIRQRSVDGQAIVRASTAIEGTTS 177

Query: 182 QTHKIYYA--QSGSI--DLDRQAIILNDG--EVHRKSPISKDISIMKFKSYTLQTESANS 235
                 +     G+    ++ +   L+DG  E+     +++D     + +Y + +  A S
Sbjct: 178 LAGVTIFTFDAQGAFGQQIEARRATLHDGYWELQDARVLTQDSGPESYDTYLVASNLAPS 237

Query: 236 STI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                +   D    + L+               YR +    L + +  +   ++ + A+ 
Sbjct: 238 QVRQRVTPPDSVPFWQLSETIARSERAGLDAARYRLQRAVLLARPM--LFVAMVLVAASV 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                R           ++  F ++     +           P+   F   + S+
Sbjct: 296 SLRFFRFGGIGRMALAGVAAGFALYVARQVMEGLGASGIVAAPVAAWFPAVVGSL 350


>gi|15888447|ref|NP_354128.1| hypothetical protein Atu1107 [Agrobacterium tumefaciens str. C58]
 gi|15156139|gb|AAK86913.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 362

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 114/359 (31%), Gaps = 20/359 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y L+    + +   L +  I ++    +    +S     S+   L ++   +P +
Sbjct: 4   NTLARYFLKRYLMTTIWFVLGVSSIIYLADFSETARRMSGLPGYSVPAALGLTALRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    I P +  A+ + I   +  N 
Sbjct: 64  LQQTVPFIALFVGMTTLISLNRRYELVVTRAAGISAWQFILPFVLGAVFIGILSVMVLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEE----NLFFRLDDDLYIKISKYNPNNTL-QGIFI 175
           I    ++    + A  +        +E            D  I    +  N T+   + +
Sbjct: 124 IAAWGQNKSLAMEAGLRNDAGGGRQQEIIPWMRQSSGGKDTIIGAKSFEDNGTMLLDVVL 183

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           +D                   D ++  L DG              +  +  ++Q  +   
Sbjct: 184 IDVDKDGNIVS--------RKDAKSAKLEDGYWLLNGVSETRAGHVPVRQESMQISTNLR 235

Query: 236 STIVLKANDQNLS---FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              V +   Q  +   F L+             +   +++H  L+  L  V   LI+  A
Sbjct: 236 REFVQERMTQTETVAFFDLSHKIEVAKSFGLSSKALETQYHFLLSTPLLLVAMTLIA--A 293

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  R  +    I   +   F ++   + ++          P + +++  I ++ L
Sbjct: 294 TVSLKFSRFAQSRSVILGGIVSGFVLYVV-TVLVRAFGSGGVVPPTVAVWVPVIVALAL 351


>gi|317060239|ref|ZP_07924724.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313685915|gb|EFS22750.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 265

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 90/255 (35%), Gaps = 4/255 (1%)

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           ++KP+L+L      F+   +  I P+    ++ LS+K         L+E  F    ++  
Sbjct: 6   ILKPILYLGFASMFFILFLQESIIPRSYIKLQYLSSKIAYENPVFQLKERTFMNNLENYS 65

Query: 159 IKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI 218
           + I K   +   +GI I ++    T  +      +   D  +I+L               
Sbjct: 66  LYIDKVGRDKHAKGILIFENDKKSTFPVVLVGHEAYWRD-SSIVLEKANFISFDEKGVRK 124

Query: 219 SIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQ 278
               F+   ++ ++   S + +K  +  +  +            E    Y+ E H++L  
Sbjct: 125 LTGSFEDKRVELQAY-FSDLKIKVKETEMMSIATLLQEMKGKTKEEKLIYKVEIHRKLAL 183

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
               V+  ++ +         R  KK   +   L+I F +      I+         +  
Sbjct: 184 PFSSVMLSMLGV--FLSIGHQRSGKKAGILVGILTIFFYISLLNIGIVLANVGKIPILLG 241

Query: 339 LYLFLFCISSIFLLM 353
           ++L    ++++   +
Sbjct: 242 VWLPNLLLAALTYRL 256


>gi|161524005|ref|YP_001579017.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351234|ref|YP_001946862.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
 gi|160341434|gb|ABX14520.1| permease YjgP/YjgQ family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335256|dbj|BAG44326.1| YjgP/YjgQ-like transporter [Burkholderia multivorans ATCC 17616]
          Length = 382

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/380 (12%), Positives = 120/380 (31%), Gaps = 27/380 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEP-PGHWLLKGVTETELTPIQPIAGQAPDALNPVYR 239

Query: 218 ISIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
              +    Y L+++ +    +++L + ++     L     +     +  + Y     ++L
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFRYIQHLRENHQDTQRYDIALWRKL 299

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
                  +  ++S+  A      R       +F  + +        +   H    N +  
Sbjct: 300 LYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWPA 357

Query: 337 PILYLFLFCISSIFLLMIKK 356
           P+       I     L   K
Sbjct: 358 PLTAATPGLIYLALGLFALK 377


>gi|194426241|ref|ZP_03058796.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|194415549|gb|EDX31816.1| putative permease, YjgP/YjgQ family [Escherichia coli B171]
 gi|195183222|dbj|BAG66767.1| putative permease [Escherichia coli O111:H-]
          Length = 285

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 110/290 (37%), Gaps = 19/290 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--------KFKSYTLQTE 231
                   YA+S +I+ D+   IL+ G  H+K    K+   +         F S  L+  
Sbjct: 181 DLSLESYIYARSATIEDDKT-WILH-GVNHKKWLNGKETLEILDNLAWQSTFTSMNLEEL 238

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
           S   ++  ++  +  +++L            +    YR    ++L   +F
Sbjct: 239 SMPGNSFSVRQLNHYINYL--------QETGQPSSEYRLALWEKLGHPIF 280


>gi|163854870|ref|YP_001629168.1| hypothetical protein Bpet0565 [Bordetella petrii DSM 12804]
 gi|163258598|emb|CAP40897.1| conserved hypothetical protein [Bordetella petrii]
          Length = 392

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 124/345 (35%), Gaps = 23/345 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  LL +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNV-GDKFSMLALLYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + + L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLRMLWLITLPLMIGASLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL-FFRLDDD---LYIKISKYNPNNTLQGIFIV 176
           + P       + S   +   + + ++    F     D     I I+K   +  ++G+ + 
Sbjct: 120 VTPAAEIKSGEASLMFRGKASGTRMDSGYWFKEPTRDGGTRIINIAKLLADGNVEGVTLY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILND------------GEVHRKSPISKDISIMKFK 224
           +           + + +    R  ++L +                 K P +   S+ K  
Sbjct: 180 EF-KPGLQLTTMSTAATGAFTRDKLVLKNVVETHIDDRAAQALADAKPPRTPPASVTKLP 238

Query: 225 SYTLQTESANSS--TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
              L T  +       VL     +L+ LL+   +  ++             ++++     
Sbjct: 239 QRELDTTLSPERLLARVLTPERMSLNTLLD-YIDYLHHNQLDAGRQVVALWRKVSYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           ++  +I+I A       R+      +FI + +  G F      ++
Sbjct: 298 LV--MITIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALN 340


>gi|134302362|ref|YP_001122331.1| YjgP/YjgQ permease [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050139|gb|ABO47210.1| putative permease YjgP/YjgQ family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 351

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 1   MNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 60  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +    N    GI     +D
Sbjct: 120 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQD 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 172 NKVREIRYAESATYINDASANVFN 195


>gi|285019431|ref|YP_003377142.1| permease [Xanthomonas albilineans GPE PC73]
 gi|283474649|emb|CBA17148.1| putative yjgp/yjgq family permease protein [Xanthomonas
           albilineans]
          Length = 368

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 120/367 (32%), Gaps = 23/367 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           +LY+ R +  + L++   ++ +  ++ +      +   + SL   +    Y +P     +
Sbjct: 9   DLYVGRAVLGTVLLTWAVLLGLDVIMALSNEFKDIGKGSYSLGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  L         +L + +  S   + P 
Sbjct: 69  FPTGAVIGVLMGLGQLAATSELTALRALGLSRRRLSLAAAATMTVLIVAMVFSGETLGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNN---------TLQGIF 174
            ++    + A A+     S      L+ R  D      ++    +          L+ + 
Sbjct: 129 AQNQADVIKANAKFNSNMSMARYSGLWAREGD--TFLNAQAGEEHLQDGGGSWLELRDVR 186

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +    D          + S +       L  G  +R +   + +    F S    ++   
Sbjct: 187 LYSL-DQNGRLATLTHASSAEHHANGWTLKQG--YRDTFAERSVQRETFDSQPWPSQLDA 243

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     A  +NLS   L+ +             Y  ++  R   W +P+    +   A 
Sbjct: 244 AALASGLAKPRNLSAHDLHVSIEYRQRNGLDARDYEDQYWSR---WFYPINVLALCFAAI 300

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIF 350
                 +R       +F+ +  +  VFW       ++     +   +   L    + ++ 
Sbjct: 301 PFAFGALRSGGMGKRLFLGILFAL-VFWLLQLFFGRMAGALKFDYRIAYALPPLVMLTVS 359

Query: 351 LLMIKKK 357
            LM +K+
Sbjct: 360 WLMFRKR 366


>gi|224373192|ref|YP_002607564.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
 gi|223589644|gb|ACM93380.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
          Length = 323

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 99/247 (40%), Gaps = 11/247 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y++      F+M  L +  +  +I I+   N+ ++   +   L K+    +P V
Sbjct: 1   MDRLSKYLISGFWPIFIMIFLILFLVTSIIIIISIANITANIHITFGELFKMYMLSLPKV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +     F +   ++    +   EL+ + ++G    TL+KP LFL++LL+I   +   I
Sbjct: 61  LFITLSISFFISAVSLFAKHSETQELIALFSSGVKPYTLLKPFLFLSLLLTIVNLLILFI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  +   K    + Q A  F++ + +   +   +  I  S      T + I +    +
Sbjct: 121 SIPYAKVAFKNFKNQKQQAAKFNF-QTSQISQRFGNWNIFTSSK-KGKTYENIILY---N 175

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + +++  A+   +      +   L  G V+     +    I+ F    +  +   SS  
Sbjct: 176 NKENQLILAKYAELKNKNGYLNFELKKGNVYAFDKST----IINFGKMQINQKIPKSSYS 231

Query: 239 VLKANDQ 245
           + + ++ 
Sbjct: 232 IFRFSEY 238


>gi|218296306|ref|ZP_03497062.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218243378|gb|EED09908.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 336

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 109/336 (32%), Gaps = 29/336 (8%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L+ +   + +     + +     +     +  S       +L +  Y +P  L +
Sbjct: 2   LGRYVLKEVLLPYGVGVFLFMALLTFDLLSSLSGVFLSRGAGAEAILLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L+ + R++EL      G   + L+KP+L L++L+++    +   + P
Sbjct: 62  ALPLGLVFAILVGLSRLIRHSELKAAYAAGVPPLALLKPLLLLSLLVALVNLYNLAEVRP 121

Query: 124 KCRSTIKQLSAKAQL--ALTFSYLEENLFFRLDDDLYIKISKYNPN---NTLQGIFIVDS 178
           +      +  A+           L   ++      +Y    +  P    N L G+ +VD 
Sbjct: 122 RALEAYDRALARLLYGEGGPSGVLRRQVYALEGQGVY-YAEEVVPEVGQNRLYGLRVVD- 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              +  +IY A+ G  D +    +   G V  +  +     I+ F +          S  
Sbjct: 180 ---EKGRIYSAKEGVWDREGWQFL---GYVLEEGKLKPFQGILPFPA----LFRPKESLG 229

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D +    L         R  +    R   H+RL   L       +   AA     
Sbjct: 230 SKDPYDSSTLEELWQ-------RARVEPAARFALHRRLADALGGF---FLGFAAAALGLS 279

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           +R+          + + FG +  ++        +  
Sbjct: 280 LREAA--WAFLGVVLLIFGYYVLWTLSAQLARYDVS 313


>gi|283833699|ref|ZP_06353440.1| putative permease [Citrobacter youngae ATCC 29220]
 gi|291071385|gb|EFE09494.1| putative permease [Citrobacter youngae ATCC 29220]
          Length = 360

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 126/366 (34%), Gaps = 21/366 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNIFSRYLIRYVFIGFAAAAGILLPLFTTFNLINELDDVSPGGYRWPQAVIVVLMTLPRN 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++  EL  I +TG S   +    L   +++   L +++  
Sbjct: 61  LIDLSPFIALLGGIAGLGHLSKTMELTAIRSTGLSIFKIAMITLTAGVMIIALLAVTDEW 120

Query: 121 I-EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           I  P  +  ++  +          + + N+ +    D +  I   +  N   GI I   R
Sbjct: 121 IAAPLQQHALRIRTTAMAQDPNADHQKNNMLWARRGDAFATIKSLDAKNQPVGIEIFHYR 180

Query: 180 -DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-------FKSYTLQTE 231
            D       YA+ G +  +     L      R     +   + K       F    L+  
Sbjct: 181 PDLSLETYIYAEKGRVLKNGT-WTLEGVYEKRWLDGRETTEVHKQQQWKSIFTRINLEML 239

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           +  + +  +K     +S+L            +    +R    ++L + L  +   L++I 
Sbjct: 240 TMPAGSFSIKQLRSYISYL--------QDTGQPSIEFRVALWQKLGRPLLTLAMMLLAIP 291

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH-KIEQNPYYIPILYLFLFCISSIF 350
                ++ R       + + + +    +     I++  I  +      +      +  I 
Sbjct: 292 F--TFSIPRSPGIGSRLAMGVIVGLLTYISDQIIVNIGILFDLQVQLTVLCPPVALLIIA 349

Query: 351 LLMIKK 356
           L+++ +
Sbjct: 350 LILVSR 355


>gi|154246776|ref|YP_001417734.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
 gi|154160861|gb|ABS68077.1| permease YjgP/YjgQ family protein [Xanthobacter autotrophicus Py2]
          Length = 364

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 115/357 (32%), Gaps = 22/357 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTV 60
           +    Y  R    + ++  L  V +  ++  L+     +   + ++ +L  ++ Y  P+ 
Sbjct: 4   RILGFYFARRFASAVVLIFLSCVTLIVLVDFLEMARRTADREQVTVGLLALVTLYRAPSF 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF       +    ++R  EL++    G S    I P + +A L+ +F     N 
Sbjct: 64  TEQLMPFAVLFGAISTFVLLSRRLELVVARAVGLSVWQFITPPVLVAFLIGVFSTTVFNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN--LF----FRLDDDLYIKISKYNPNNT-LQGI 173
           +    +    Q+  +   + +   L +    F      +D    I+          L G+
Sbjct: 124 VSADFKERANQIEGEIFGSSSSGLLPQGKKEFWVRQQSVDGQSIIQAQATRQGGRALSGV 183

Query: 174 FIVDSRDTQTHK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QT 230
            + +            A+S ++     A IL D  V     +   +    + +Y +    
Sbjct: 184 VVFEFDKADRLVERVEARSATL--GDGAWILTDARV-----LVPGLDHQHYDTYLIATNL 236

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       ++     +   L      +        E YR +    L +    V   LI+ 
Sbjct: 237 DPKQIQESLIAPETVSFWQLPA-AIRSAEQSGFGAERYRLQLQSLLARPFLLVAMVLIAA 295

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           V      + R       I   +   F ++ G   +   +    +  P+   +   ++
Sbjct: 296 VVGL--RVFRFGGVGQTILGGVLAGFLLYVGTK-LAEDLGDAGFVHPVAAAWFPAVA 349


>gi|224438206|ref|ZP_03659141.1| hypothetical protein HcinC1_09510 [Helicobacter cinaedi CCUG 18818]
          Length = 339

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 128/355 (36%), Gaps = 17/355 (4%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + Y+     + F    L + FIA V+ ++           S   L  +  YLIP+ L  
Sbjct: 2   LKKYLFSSFAQIFFPFFLVLFFIASVVLLIDIAGRTYVVKMSFLDLGTLFMYLIPSSLFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       ++ +  + EL++  + G+  + +++  L + +L ++ LF+   I+ P
Sbjct: 62  IIPITFFAALVLGISRLAYDYELMVCFSLGSKPLDMVRFFLPITLLATLVLFVFSFILLP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
              S  K   A+ +  +  + ++   F +   D  + +   + N   Q + +      + 
Sbjct: 122 LTTSASKNFVAQKKADIDVN-IKPGEFGQKLGDWLVYVDSVD-NRKYQNLVLFSENGFEG 179

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                AQSG  + ++    LN           ++I  + + + +++   +          
Sbjct: 180 DTFIVAQSGQTNNNQGLFELNLTSGKAYFAAPEEIKRVDYNTMSVRQNVSEPQLSGYDLI 239

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                           +  E  +  R     +L Q +   +F L+SI       +   R 
Sbjct: 240 AYWK----------EAFSLESRQKLR-----KLAQAVMVSLFPLVSIFLIPLFGIANPRF 284

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           + +  +  +  S  +++   YI          I I  L+ F    ++   I + Y
Sbjct: 285 RSNMSYFYVIGSVALYFVLMYIASDNFALVGMISIPILWFFGGFFLYKKFIARFY 339


>gi|258542096|ref|YP_003187529.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633174|dbj|BAH99149.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636231|dbj|BAI02200.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639286|dbj|BAI05248.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642340|dbj|BAI08295.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645395|dbj|BAI11343.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256648450|dbj|BAI14391.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256651503|dbj|BAI17437.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654494|dbj|BAI20421.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 370

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 111/365 (30%), Gaps = 27/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    S +     +  I  +   +  +  V++    S N++ +I+   +P   
Sbjct: 6   TLSRYIARQFVFSVVAMIASLTGIVCLFDFIDLLRRVATKPDVSTNVVTEIAALHVPYFA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  TEILPFGMLLGGIVCFWRLTRSSELIVARAAGISAWQFLTAPVACAMLIGAVFTTLISPV 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL---------EENLFFRLDDDLYIKISKYN-PNNTLQ 171
                   ++L  +                   + +  +       +        +  L+
Sbjct: 126 SSSMYRRAEELDQQYLRTGGGPLSLSSGSLWLRQSDSQYDPHGVAMLHARGVQLKDGLLR 185

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                +F +D +D +      A  G +       IL+D  V R + +   +  +      
Sbjct: 186 IRNVSVFRLDHQD-KLMMRIEAPEGYL--GTLKWILSDASVVRPNDLLHHVGQI---DLP 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFG 286
                             ++  L  P   +   R       +R  F   L   +      
Sbjct: 240 TDLTVNRVQESFSSPETLSVWAL--PGFISLLDRSGFSSIRHRIHFQSLLALPMLAGTMA 297

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++  A       R+      I   ++  F +F   S +  +   +    P+L  +   +
Sbjct: 298 LVA--AGFSMRPSRRGGVARMIGSGVAAGFLLFTV-SKVAEQFGNSGALPPMLAAWAPTL 354

Query: 347 SSIFL 351
           + + L
Sbjct: 355 AGLCL 359


>gi|282892297|ref|ZP_06300693.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497888|gb|EFB40239.1| hypothetical protein pah_c221o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 359

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 33/361 (9%)

Query: 21  LFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM 80
           +  V I    +    I   ++   + + ++      IP +LP+V P    + +  ++  +
Sbjct: 1   MAFVAILLTTR-FDEIAHFAALGAAGSHIIWFIVSQIPYILPIVIPISSLIASLLLIQRL 59

Query: 81  NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLAL 140
           ++  EL  +  +G +   ++ P+L  A  +++  F   + +          L  + +   
Sbjct: 60  SQTHELTALRASGWAIRDILYPILIAAAFIALLNFYIVSELATNSHLQASLLKKELRSIN 119

Query: 141 TFSYLEENLFFRLDDDLYIKISKYNPNNTLQG--IFIVDSRDTQTHKIYYAQS------- 191
               L      R+    Y      +         +F + S+     ++  A+S       
Sbjct: 120 PLLLLNNKHLMRV-KGAYFHAMGNSRVGEFAKNALFAMPSKQNNRIQLMIAKSLHADSVL 178

Query: 192 --GSIDLDRQAIILNDGE---------VHRKSPISKDISIMKFKSYTLQTESAN--SSTI 238
             G+   +   + + +GE         + +     +D S++ F+       + +   S +
Sbjct: 179 FIGNSVTNMTTLPVENGESFDHFVVENLEKTMTPIQDFSLI-FQRNVFSLSNDHLKLSLL 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLTQWLFPVIFGLISIVAADKR 296
           + +  +Q L  L  PN      +    +  R  +E  +R +  +    F L+        
Sbjct: 238 IYRMKEQALH-LRQPNLLREEMKQLQKQQNRSYAEIIRRFSLAIAVFSFTLMGCAFGM-- 294

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL-FCISSIFLLMIK 355
            + R R     +F+     F  +    +    IE + +   +LYL     I  I   ++ 
Sbjct: 295 NISRHRSNKGVVFVIALAVF--YLISYFTAKGIEHHLFSATLLYLIPHLLILGISSFILY 352

Query: 356 K 356
           +
Sbjct: 353 R 353


>gi|283778149|ref|YP_003368904.1| permease [Pirellula staleyi DSM 6068]
 gi|283436602|gb|ADB15044.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
          Length = 395

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 121/402 (30%), Gaps = 57/402 (14%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIV---FIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           M      ++  I + F ++ + +     + +V Q  +              +L++  Y++
Sbjct: 1   MPVIVRQVVWDILQWFTIAIVSLTVFMMLVFVGQQARLY------GLGALAILRLIPYIL 54

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P  L    P         V   M+ + E++ I + G S + ++ P L LA LLS+     
Sbjct: 55  PNALAFAVPGSILFTVCVVYGRMSSDNEVVAIKSMGISPMVVVWPSLALAFLLSLVAVWL 114

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI--SKYNPNNTLQGIFI 175
            ++      + ++++  ++   + +  L      R       +I          ++ I  
Sbjct: 115 NDVAFSWGVTGMRRVVLQSVEEICYGMLRT---QRSYSGPTFQIIVKDVEGRKLIRPIMT 171

Query: 176 VDSRDTQTHKIYYAQSGSIDLD-----------------------------RQAIILNDG 206
               +        A    +  +                              + I L D 
Sbjct: 172 FSENNDMPAFTLRATEAELRSNLQRNTLVVVLTDCEIDFSNGARVSSPGIVEREIKLEDA 231

Query: 207 EVHRKSPISKD-------ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN 259
              R    S          S ++ +   +     + +            F L+P+   P 
Sbjct: 232 THKRVGGDSPTNLPLRQISSEVELQEIEITKLEQSLAAETGMNLMTGNFFELSPDAWQPK 291

Query: 260 YR-----PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
            +        L   R+E  +R +     + F +I    A               F  L I
Sbjct: 292 KKKLETARTRLYRLRTEPWRRWSNGFACLAFVMIGTPLAITLRNSDWMSTFGRCF--LPI 349

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
             G +   ++ + K +        +++     +++   +IKK
Sbjct: 350 LIGYYPFLAFALEKAKSGDLPPYSIWIANIACAAVGYWLIKK 391


>gi|254453977|ref|ZP_05067414.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
 gi|198268383|gb|EDY92653.1| permease, YjgP/YjgQ family [Octadecabacter antarcticus 238]
          Length = 362

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 112/337 (33%), Gaps = 16/337 (4%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
             Y  R    +F  +      +  +I +++++        SL  + ++S   +PT +  +
Sbjct: 2   HRYFARRFAWTFAATFGGFFVLMLLIDLVEQLRRYGGD-ASLGDMFQLSLLNLPTGIYAI 60

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    + T      + R++EL++    G S +  +   L + +++        N +   
Sbjct: 61  LPLIMVLATVTTFLGLARSSELIVTRAAGRSALNALIAPLIVTLIIGAIAIGVLNPLVAA 120

Query: 125 CRSTIKQLSAKAQLALTF--SYLEENLFFRLDDD---LYIKISKYNPNNT-LQGI-FIVD 177
                +      +       +  E  L+ R  DD     I+  + N + T LQ + FI  
Sbjct: 121 TLKEYEARENALRSDGPSVLAISENGLWLRQGDDNSQTVIRAGRANLDGTQLQDVTFITF 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  +   A S ++      +            +++ ++       TL+  S  ++ 
Sbjct: 181 PPTGGPTRRIEAASANLTQGAWELSEAKAWPLNSGRVAESVAT---THTTLRIPSTLTAD 237

Query: 238 IVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
            +  +     S  +   P   +           ++  F   L Q  F +   LI   A  
Sbjct: 238 QIRDSFGVPSSIPIWELPAFIDRLEVAGFSAARHQVWFQMELAQPAFLLAMVLIG--AGF 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                R  +    +  ++ I F +F+  ++     E 
Sbjct: 296 TMRHQRGGRTGVMVLTAILICFALFFLRNFAQILGEN 332


>gi|323525103|ref|YP_004227256.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
 gi|323382105|gb|ADX54196.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1001]
          Length = 382

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 128/382 (33%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELRPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSID-LDRQAII-LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  A+SG         +  + D ++    P S             
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +    Y+L++E +    +++L + D+   F L     +     +  + Y     ++L 
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKLL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFA--YLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKKKYT 359
           +       +  + L ++  K+ 
Sbjct: 359 LTAATP-GLVYLVLGLVGLKWV 379


>gi|144900091|emb|CAM76955.1| permease YjgP/YjgQ family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 367

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 117/369 (31%), Gaps = 29/369 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVL 61
           +   YI R    +F      I+ + ++  I++ I   +      +  L+ ++   +P ++
Sbjct: 6   TLSAYIGRQFLLAFASVLAVILGVVFLFDIIELIRRAAGRGDLGVFNLVAMALLKLPQMM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF   +        + R  EL++  + G S    + PVL L   L +    + N +
Sbjct: 66  HTVLPFAVMIGAMVAFWRLTRTHELVVARSAGISAWQFLTPVLVLVAGLGVIELTAFNPM 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSY--------LEENLFFRLDDDLYIKISKYNPN---NTL 170
                   +++  +  L  T +         L E         + +   +         L
Sbjct: 126 AATMYGRFQKMEDEILLGKTSALDVSEMGLWLREG---DAQRQIVLHADQVQQELLTLNL 182

Query: 171 QGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +G+ +   + +    +   A SG +      + L D        +    S +   +  L 
Sbjct: 183 RGVHVFVLNAEEHFTRRLSAASGRLADG--VLELTDVW-----EMEGGKSSVHHPALKLA 235

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLI 288
           TE          A+ + +SF   P       +       +R  F   L+  L      L+
Sbjct: 236 TELTLERVHDNFASPETMSFWQLPAFITFFEKAGFAATKHRMHFQSLLSSPLLYCAMVLV 295

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVF-----WGFSYIIHKIEQNPYYIPILYLFL 343
           + V + +  +      +       +     F     + F       +    + P L   L
Sbjct: 296 AAVFSLRPNMRAGGLLMRVGGGVAAGFGIYFFNKIIYAFGLSATLPQGLAAWSPALVAGL 355

Query: 344 FCISSIFLL 352
             +S +  L
Sbjct: 356 IGVSGLLHL 364


>gi|83313005|ref|YP_423269.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82947846|dbj|BAE52710.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 367

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 120/367 (32%), Gaps = 33/367 (8%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVLPMVT 65
           YI R    +F    L I+ I  +  +++ I   +      +  +L ++ + +P +L  + 
Sbjct: 10  YIGRQFASAFATVLLVILGIILLFDVIELIRRAAGRPELGITPILLMAFFKLPQMLHTIL 69

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           PF   + +      + R  EL++    G S    I PVL +A +  IF   + N +    
Sbjct: 70  PFAVMIGSMVCFWRLTRTHELVVARAAGISVWQFITPVLAVAGIFGIFEITTFNPMAAAM 129

Query: 126 RSTIKQLSAKAQLALTFSY-LEE-NLFF---RLDDDLYIKISKYNPNNTLQGI-----FI 175
               ++L  +       ++ + E  L+      + ++ +       +  +  I     F+
Sbjct: 130 YGRYERLQDELLATKASAFDISEVGLWLREPHENGEMVVHSETVRQDGLVLHIRDAHFFL 189

Query: 176 VDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            D  D   H+   A+S ++       R+A ++  G+           + +          
Sbjct: 190 YDRPD-HFHQRISAESATLVDGAFEVRRAWVMEGGKPSVFKEQMHIPTQLTLDRIHDNFA 248

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           S  + +                              +R      L   +      L++ V
Sbjct: 249 SPETLSFWQLPGFIRFFE----------RAGFTANKHRLYLQSLLASPVLYCGMVLMAAV 298

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVF------WGFSYIIHKIEQNPYYIPILYLFLFC 345
            + +    R    +  I   ++  F V+      +         +    + P L+  L  
Sbjct: 299 FSLRP-NTRSGGLLARIGAGVAAGFAVYFFSKVIYALGLSATLPQTLAAWTPPLFAGLIG 357

Query: 346 ISSIFLL 352
           +S +F L
Sbjct: 358 LSGLFHL 364


>gi|84622419|ref|YP_449791.1| hypothetical protein XOO_0762 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188578606|ref|YP_001915535.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84366359|dbj|BAE67517.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188523058|gb|ACD61003.1| putative permease, YjgP/YjgQ family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 368

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 113/366 (30%), Gaps = 21/366 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKDIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQ--LALTFSY-----LEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            ++    L A A+    +  S        E   F          +   +    L  + + 
Sbjct: 129 AQNQADTLKASARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGDTALDLHDVRLY 188

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             DS        Y A        R  +     +V R +   + +    F     Q++   
Sbjct: 189 HLDSSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQLNP 243

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     A  +NLS   L  +    +        Y  ++  R   W +P+    + + A 
Sbjct: 244 AALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEDQYWSR---WFYPLNVLALCMAAI 300

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFL 351
                 +R       +F+ +  + G +    +           Y     L    +  +  
Sbjct: 301 PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSA 360

Query: 352 LMIKKK 357
            + +++
Sbjct: 361 WLFRRR 366


>gi|71901306|ref|ZP_00683403.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
 gi|71728926|gb|EAO31060.1| permease YjgP/YjgQ [Xylella fastidiosa Ann-1]
          Length = 385

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 127/377 (33%), Gaps = 29/377 (7%)

Query: 1   MKSF----ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           MK F    + Y+ R +  + L++ L ++ +  V      +  +   + S    +    Y 
Sbjct: 18  MKLFPCLHDRYVARAVVATVLLTWLVLLGLDVVNGFASEVRDIGKGSYSFGHAIAYIAYT 77

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P     + P    +     L  +   +EL  +   G SR      V+ +  + +  + +
Sbjct: 78  VPRRAYTLFPTAAVIGMLLGLGQLAATSELTALRALGVSRTRSSLSVMMMIGMGTGLMVL 137

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS-----KYNPNNTLQ 171
           +   + P  ++    L A A+     +    + F+  + ++++        + +    + 
Sbjct: 138 TGETLGPWAQAQADILKASAKYKSDMTGARYSGFWAREGEVFLNARSGEEKRLDSGGIM- 196

Query: 172 GIFIVDSR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + + D R              ++  ++  +   IL   +V R +   + +    F S  
Sbjct: 197 -LILHDVRLYQLAADGRLQSMTRAARVEHHQDVWILQ--QVQRDTFSERGVQRETFHSLP 253

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVI 284
            ++    ++     A  +NLS   +    +  YR         +  ++  R   W +P+ 
Sbjct: 254 WRSRLDPAALAAGLAKPRNLSA--HELVQSIEYRRRNHLDARDFEGQYWSR---WFYPIN 308

Query: 285 FGLISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ--NPYYIPILYL 341
              + + A      L+R        F+ +  +   FW       +I       Y     L
Sbjct: 309 VLALCLAAIPFSFGLLRSGGMGKRTFLGILFALS-FWMLQMFFERIASVLKLNYQIFYLL 367

Query: 342 FLFCISSIFLLMIKKKY 358
               +      + ++++
Sbjct: 368 PPMVMLCGSYWLFRRQH 384


>gi|75675870|ref|YP_318291.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
 gi|74420740|gb|ABA04939.1| permease YjgP/YjgQ [Nitrobacter winogradskyi Nb-255]
          Length = 365

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 125/366 (34%), Gaps = 26/366 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y         + +      I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 6   NTLGRYFAGRFM---VAALGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRV 62

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  +TPFC  +       +++R  EL++    G S    I P L  AI L +F    
Sbjct: 63  PQLLEKLTPFCVLIGAMTCYLALSRKLELVVARAAGVSAWQFISPTLACAIALGVFATTV 122

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEE--NLFFR--LDDDLYIKISKYNPNN--TLQ 171
            N +    R   K++ A+     +   L +    +     DD   I  +  +      L 
Sbjct: 123 YNPLSSNLRELSKRMEAEMFGGASGGGLHDASGFWINQVTDDGQAIINAALSEQQGVRLT 182

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ +     D++  +   A+  +++  R    L  G   R +  +  +    F       
Sbjct: 183 GLTVFRFDPDSRFRERIEAREAALEDGRW---LFKGVR-RFTLDNPPVEQETFV-LPTSL 237

Query: 231 ESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             A            +   L  P+   +          YR ++HK + Q    ++  ++ 
Sbjct: 238 TPAQVQNSFSTPETVSFWQL--PDYIRSSESSGFATAGYRLQYHKLIAQPF--LLAAMVM 293

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISS 348
           + A+      R       +   +   F ++   S +   + +     PI   +   C+  
Sbjct: 294 LAASVSLRFFRFGGVQKMVLSGVGSGFLLYV-LSKVTEDLSKAELMNPIAAAWLPVCVGG 352

Query: 349 IFLLMI 354
           +   ++
Sbjct: 353 LTGFLV 358


>gi|221199306|ref|ZP_03572350.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221205792|ref|ZP_03578807.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221174630|gb|EEE07062.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180591|gb|EEE12994.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 382

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 115/381 (30%), Gaps = 29/381 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFVFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEP-PGHWLLKGVTETELTPIRPIAGQAPDALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     ++  L      +     +  + Y     ++
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENHQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L       +  ++S+  A      R       +F  + +        +   H    N + 
Sbjct: 299 LLYPFAVFVMLVLSLPFA--YLHTRAGVVGVKVFGGIMLGMSFQLLNTLFSHIGTLNTWP 356

Query: 336 IPILYLFLFCISSIFLLMIKK 356
            P+       I     L   K
Sbjct: 357 APLTAATPGLIYLALGLFALK 377


>gi|293603258|ref|ZP_06685689.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292818347|gb|EFF77397.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 372

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 112/325 (34%), Gaps = 26/325 (8%)

Query: 24  VFIAWVIQILQRINLV--SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN 81
           + +  +      ++ +       S+  LL +    IPT L  + P    +     L  + 
Sbjct: 1   MALLGLFTFFALVDDLDNVGDKFSMMALLYMQALAIPTRLYDLLPIGLLIGAILALAGLA 60

Query: 82  RNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           +  EL+I+  +G S + L++ +  + I L I   +    + P       + +   +    
Sbjct: 61  QRNELVILRVSGVSGMRLLRMLWVVTIPLMIGAALLSEYVTPWAEIKSGEANLMFRGKAG 120

Query: 142 FSYLEENL-FFRLDDD---LYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQSGSIDL 196
              L+    F     +     I I++   +  + GI + +  +D     +  A +G    
Sbjct: 121 GDRLKSGYWFKEPTANGGMRIINIAELKGDGQVAGITLYEFKKDQTLTVLSTAPTGLFSH 180

Query: 197 DRQAIILNDGEVHR------------KSPISKDISIMKFKSYTLQTESANSS--TIVLKA 242
               ++L D    R            + P +   S++K    T+ T  +       VL  
Sbjct: 181 GD--LVLKDVSETRLDNDAADALANARQPKNPPASVVKVPERTIDTTLSAERLLARVLTP 238

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              ++  LL+      + + +      +   ++L      ++  +I+I A       R+ 
Sbjct: 239 ERMSIVTLLDYVEYLRDNQLQYGRQVVA-LWRKLAYPFTLLV--MITIAAPIGLMQTRRG 295

Query: 303 KKIHPIFISLSISFGVFWGFSYIIH 327
                +FI + +  G F      ++
Sbjct: 296 GVGAKVFIGILLGVGFFMLNQLALN 320


>gi|220935306|ref|YP_002514205.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996616|gb|ACL73218.1| permease YjgP/YjgQ [Thioalkalivibrio sp. HL-EbGR7]
          Length = 353

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 121/353 (34%), Gaps = 11/353 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI R +    L++ L +  +  +   +  ++ +  +   L   +  +   +P  
Sbjct: 1   MKRLDAYIARNVMGGTLLAMLVLGGLDTLFAFIAELDEIGRNDYGLIQAVVYTALTVPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    + +   L ++  N+EL  +   G     +++ VL   +++ + + +    
Sbjct: 61  VYELFPTSVLLGSLLSLGALAANSELTAMRAAGVPIAGIVRSVLRAGLMMLVVVVLLGEA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      + + ++A     +      L+ + D   +I++    P+  L  + I +  D
Sbjct: 121 VAPMSEQRAQTIKSQASGEEMYRG-SAGLWAK-DGQRFIQVGVVMPDLRLLDLSIYEL-D 177

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +       ++GS      A IL D E             +  + +         S + +
Sbjct: 178 AERRLSSMLRAGSASYQNGAWILRDIERSHLGEAGVTGEHVDEERWPRLLAPELFSVLAV 237

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
           +      + L                ++   F  R T  L  ++  L+++        +R
Sbjct: 238 EPRQMAATTL-AQYVTYLRENDLDSASFELAFWMRFTTPLSSLVMLLLAVPFVFG--SLR 294

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                  +FI L I  G      +++++   +   +  L   L       +  
Sbjct: 295 TGGAGQRLFIGLLIGVG-----FHLLNRTLNHMGLVYGLPPMLSATLPTLIFF 342


>gi|33603373|ref|NP_890933.1| hypothetical protein BB4399 [Bordetella bronchiseptica RB50]
 gi|33577497|emb|CAE34762.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 422

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 119/354 (33%), Gaps = 41/354 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 31  MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNV-GDKFSMLALFYMQALALPTR 89

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 90  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 149

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +       L    +F+          I I     +  ++ + + 
Sbjct: 150 VTPAAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 209

Query: 177 DSR-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHR------------KSPISKDISIMKF 223
           + R D +   ++ A +G        ++L D    R            K P      + K 
Sbjct: 210 EFRSDLEMTALWTAPNGRFSRGD--LVLTDVSETRIDEHAPSALADAKQPKEPPARVTKV 267

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR----------SEFH 273
               L T  +          ++ L+ +L P   +     + +E  R              
Sbjct: 268 PELKLDTTLSP---------ERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALW 318

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           ++L      ++  +I+I A       R+      +FI + +  G F      ++
Sbjct: 319 RKLVYPFTLLV--MITIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALN 370


>gi|113868947|ref|YP_727436.1| permease [Ralstonia eutropha H16]
 gi|113527723|emb|CAJ94068.1| predicted permease [Ralstonia eutropha H16]
          Length = 388

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 132/378 (34%), Gaps = 40/378 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           ++ +E Y  R +   F      ++ +     +L  +  V++   SL  L  +     PT 
Sbjct: 4   LRVYERYFGRLVYGVFAFILFAVLSLFVFFDMLNELENVNNQYTSLVALFHVL-LQAPTR 62

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + +   +E  I    G +    +  +  LA+ L+I  FI    
Sbjct: 63  VYEVLPIAVLISAIYVFSQLASQSEYTIFRVAGLNTRQALFSLFKLAVPLAIVTFIFGEF 122

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD----------LYIKISKYNPNNTL 170
           I P+     +++  +A  A   S     ++ +  D            ++ ++   P+ T+
Sbjct: 123 IAPRAEQYAQKIKLEAIGATVSSGFRSGVWVKDRDKDAATGGGEITRFVNVAGLRPDQTI 182

Query: 171 QGIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHR--------------KSPIS 215
            GI + +     +   I  AQ G      Q   L      R              +  ++
Sbjct: 183 TGITMYEFDPQYRLRMIRVAQEGRYQ-GGQLWELQGVNETRFIELASPAQGAKPARDSLA 241

Query: 216 KDIS--IMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF 272
            D     +KF   T+ +E +    +++L   ++  +  L     +     +  + Y   F
Sbjct: 242 PDFRAEQVKFPRVTMHSELTPQILSVLLVTPERMSTLDLFRYIRHLRDNKQDTQRYEIAF 301

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
            K++   L   +   +++  A                + + +  G+  G S+  H     
Sbjct: 302 WKKVIYPLTLFVMMALALPFAYL--------HARAGAVGVKVFGGIMLGLSF--HLSNTL 351

Query: 333 PYYIPILYLFLFCISSIF 350
             ++ +L+ +   IS++ 
Sbjct: 352 FSHVGLLHTWPPIISALV 369


>gi|312113657|ref|YP_004011253.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218786|gb|ADP70154.1| permease YjgP/YjgQ family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 363

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 124/365 (33%), Gaps = 25/365 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y+ +    + L      + + + +  ++ +   +    S   L  I+   IP   
Sbjct: 5   TTVGRYMAKRFAITILGVFFVTLLLIFFVDFVEVLRSGARKDVSAGTLALITLLRIPIFA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   + T     S++R +EL I+   G S    ++P L +AI   +F     N +
Sbjct: 65  ELTLPFAILIGTIAAFLSLSRTSELTIMRAAGLSVWQFVQPALIVAIFFGVFAVTVYNPV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN--TLQGI-F 174
               ++  +++ A+   +                   D   I  +K + +   TL G+  
Sbjct: 125 ASAMKAKSEKIQAEIFQSEKSFATSRGTGSWLRQESVDGPTILHAKTSADRGLTLAGVTL 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +      + ++   A    +      +   +G + + S  +    + ++  Y + T    
Sbjct: 185 LQFDPANRFYEQIQANKAELRQGYWRL---EGVIVQSSGDA----VRRYDEYFVSTYLGP 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL-TQWLFPVIFGLISIVAA 293
           +  +    + + LSF   P       +  L        H+    + +  ++  ++ I A 
Sbjct: 238 AQIMNSLGSLETLSFWDLPGFIAFAGKAGLPTRQYELQHQLFLARPI--LMAAMVLIAAT 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP-------YYIPILYLFLFCI 346
                 R  K    +   L+  FG F  FS +  K+  +         + P L   L   
Sbjct: 296 CSLKAFRFGKIQTMVLTGLTGGFGFFI-FSELSRKVGASGLVPVTVAAWGPALVALLLSA 354

Query: 347 SSIFL 351
           + +  
Sbjct: 355 TVLLY 359


>gi|33598433|ref|NP_886076.1| hypothetical protein BPP3926 [Bordetella parapertussis 12822]
 gi|33574562|emb|CAE39209.1| putative membrane protein [Bordetella parapertussis]
          Length = 422

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 117/345 (33%), Gaps = 23/345 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 31  MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNV-GDKFSMLALFYMQALALPTR 89

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 90  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 149

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +       L    +F+          I I     +  ++ + + 
Sbjct: 150 VTPAAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 209

Query: 177 DSR-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           + R D +   ++ A +G        ++L D    R    +        +   L       
Sbjct: 210 EFRSDLEMTALWTAPNGRFSRGD--LVLTDVSETRIDEHAPSALADAKQPKELPARVTKV 267

Query: 236 STIVLKAN---DQNLSFLLNPNPNNPNYRPELLETYR----------SEFHKRLTQWLFP 282
             + L      ++ L+ +L P   +     + +E  R              ++L      
Sbjct: 268 PELKLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTL 327

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           ++  +I++ A       R+      +FI + +  G F      ++
Sbjct: 328 LV--MITVAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALN 370


>gi|313672807|ref|YP_004050918.1| permease yjgp/yjgq family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939563|gb|ADR18755.1| permease YjgP/YjgQ family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 364

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 3/207 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+LY L+ + R+F++   F+  I        +   ++    +   +        P  
Sbjct: 1   MNKFQLYFLKILIRNFIVVEAFVYIIYMFFMFFTQSKYIARYGATFKDIFIYDVMRSPVF 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F +        + R TE+    + G S ++++K ++FL+  +S+ +F     
Sbjct: 61  VSQTLPVSFIVAVVVTFIILIRTTEITAYVSIGGSLLSILKVLIFLSFSVSLVMFFLTEF 120

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGI-FIVD 177
           + PK +        K  +          N F+  D + +I++   +  N  L  I FI  
Sbjct: 121 VVPKSQVKSNDYKTKYIEKREEVRVTTLNNFWIKDKNSFIQVGTIDIINKKLFDIKFIDL 180

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILN 204
             + +  K+ Y         ++  +L 
Sbjct: 181 DENGKIVKVRYISQADYIEGKKWSVLE 207


>gi|194364316|ref|YP_002026926.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194347120|gb|ACF50243.1| permease YjgP/YjgQ family protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 368

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 117/366 (31%), Gaps = 17/366 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
            F+LY+ + +  + L++   +V +  V+        +  +  SL        Y +P    
Sbjct: 7   RFDLYLGQSVFTTVLLTWTVLVGLDVVMAFSGEFKDIGKNGYSLGHAAAWVLYTVPRRAY 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +   +EL  +   G SR  L   V     LL+  + +S   + 
Sbjct: 67  TFFPTAAVIGALMGLGQLAATSELTALRALGLSRKRLSVSVAIALSLLTAVMVLSAETLG 126

Query: 123 PKCRSTIKQLSAKAQ-------LALTFSYLEEN-LFFRLDDDLYIKISKYNPNNTLQGIF 174
           P  +     L + A+          +  +  E   F          +        L+ + 
Sbjct: 127 PWGQDRADALKSSAKWGQDISTARYSGLWAREGDTFLSAAGGEEQLVGDKGTRLILRDVR 186

Query: 175 IV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +   + D Q   + +A +     D    +L           S     +  + +  + ++ 
Sbjct: 187 LYRIAEDGQIASLTHAATAE--HDNDGWVLTGVRRDTFGERSATREEVAREPWNSKLDAG 244

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +T + K  + +++ L   +             Y   +  R   W +PV    + + A 
Sbjct: 245 ALATGIAKPRNLSVAEL-RTSIEYRERNGLDARDYEDVYWSR---WFYPVNVLALCLAAV 300

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY-LFLFCISSIFL 351
                 +R       +F+ +  + G +    +         +   I Y L    + +I  
Sbjct: 301 PFAFGSLRSGGMGKRLFLGILFALGFWLLQLFFGRMAGALKFDYRIAYALPPIVMLAISG 360

Query: 352 LMIKKK 357
           L+ ++K
Sbjct: 361 LLFRRK 366


>gi|33591556|ref|NP_879200.1| hypothetical protein BP0325 [Bordetella pertussis Tohama I]
 gi|33571198|emb|CAE40702.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|332380956|gb|AEE65803.1| hypothetical protein BPTD_0320 [Bordetella pertussis CS]
          Length = 392

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 119/354 (33%), Gaps = 41/354 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  L  +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNV-GDKFSMLALFYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L+  +  + I L I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD----DDLYIKISKYNPNNTLQGIFIV 176
           + P       +     +       L    +F+          I I     +  ++ + + 
Sbjct: 120 VTPAAEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLY 179

Query: 177 DSR-DTQTHKIYYAQSGSIDLDRQAIILNDGEVHR------------KSPISKDISIMKF 223
           + R D +   ++ A +G        ++L D    R            K P      + K 
Sbjct: 180 EFRSDLEMTALWTAPNGRFSRGD--LVLTDVSETRIDEHAPSALADAKQPKEPPARVTKV 237

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR----------SEFH 273
               L T  +          ++ L+ +L P   +     + +E  R              
Sbjct: 238 PELKLDTTLSP---------ERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALW 288

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           ++L      ++  +I+I A       R+      +FI + +  G F      ++
Sbjct: 289 RKLVYPFTLLV--MITIAAPIGFMQTRRGGVGAKVFIGILLGVGFFMLNQLALN 340


>gi|295689677|ref|YP_003593370.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
 gi|295431580|gb|ADG10752.1| permease YjgP/YjgQ family protein [Caulobacter segnis ATCC 21756]
          Length = 367

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 118/365 (32%), Gaps = 30/365 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPT 59
           M   E Y+L+    + + +   +  +  +I  +     V +    +   LL ++    P 
Sbjct: 4   MGMLERYVLKRSMSALVGALAVLGAMVMLIAFVDIARNVGTRADVNFFQLLYLTVLQAPA 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + ++ PF F   T      +NR +EL+ +   G S    I P    + ++ +      N
Sbjct: 64  TILVLAPFVFLFGTMWAFVELNRRSELIAMRAAGVSAWRFIMPAATASFVIGLLTITLLN 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNN-----TLQGI 173
            +     +  +            +      + R  DD   I I     +       L+G+
Sbjct: 124 PLTTAMTARFETERDHMMNGYLNNAPR-GTWLRQGDDKTQIVIRARGRDMIDGSVRLRGV 182

Query: 174 --FIVDSRDT---QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
             F+            +   A    ++     +      V   +P +  I      S ++
Sbjct: 183 SLFVYTLNKKGVMDFTRRIEANEARLEPGFWRLT----GVREATPGAGAIRS---DSLSI 235

Query: 229 --QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF-PVIF 285
               +   +S          L  L          R E      + F  RL Q L  P++F
Sbjct: 236 PSNLDDRTASERFNTPQAVALWRL-----PATIKRAEDAGFSAAPFKLRLQQDLATPLLF 290

Query: 286 -GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLF 344
             +  + AA    L+R           +++ FG F+ F+ +   + +     P +  +  
Sbjct: 291 SAMSVLAAAFSLRLMRLGGLAALAGSGVALGFGFFF-FNELCSTLGKADVLAPSIAAWTP 349

Query: 345 CISSI 349
            I +I
Sbjct: 350 PIVAI 354


>gi|258405421|ref|YP_003198163.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797648|gb|ACV68585.1| permease YjgP/YjgQ family protein [Desulfohalobium retbaense DSM
           5692]
          Length = 358

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 126/365 (34%), Gaps = 19/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +   Y+LR      L+S    + I  +I I  R++    +   +   +      IP +
Sbjct: 1   MTTLHRYLLRQNLYYLLLSLGAGIGIYLLIDIFDRLDDFVGAQAGVEATVLYFAAKIPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P  F +     L+ M R  EL  ++  G     L    L  A+  S         
Sbjct: 61  VSQVLPAVFLLSLLAQLSIMRRQQELTALEAGGIPLSRLAVFFLVYAVFWSGLQLGFSEG 120

Query: 121 IEPKCRSTIKQ-LSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIFIV 176
           +    +   +                  +++F+ +    + + +  P         ++++
Sbjct: 121 LGVVGQRKSEAIWEQDVHGHAPSQRTLRDVWFKSEH-FVVHMHRVTPRQKTGRKITVYVM 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
           D   ++   I+ A+         + +L+  EV    P +   S        LQ + A+  
Sbjct: 180 DEDFSRIRTIHRAER--FQQQTDSWVLS--EVTSLKPHAFTTSAQDRLPLPLQQDLADFL 235

Query: 237 TIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
            +  KA  ++LS + L    +        +E   + +H +L      V+  L+++     
Sbjct: 236 AVDPKAEPESLSLWQLGHLISELRQSGSNVERLATTWHMKLAYGFSLVVMALLAL----- 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLF-CISSIFL 351
             +         I I L++ F  +  F       E+   +P+    L   ++    ++ L
Sbjct: 291 GIVSASGNIYVNIPIGLTVIFVYYALFVLGGTLGEKGIVSPWIGGWLGNMVWGGAGALRL 350

Query: 352 LMIKK 356
           + I +
Sbjct: 351 VWIAR 355


>gi|8925955|gb|AAF81687.1|AF233069_10 unknown [Galdieria sulphuraria]
          Length = 142

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YIL+ +   F++S      I   + +L  +           I  KI  Y  P  +
Sbjct: 3   TIIDRYILQLLIGPFVISSSAFTSITLSVGVLFELVRRVVEGLPFKIAGKILLYKSPYFI 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P      T      +  N EL+   + G S    ++  +    L++I  F   ++I
Sbjct: 63  FLSFPLASLFATLITFNQLANNKELIGFRSLGISNYKWLRSTIIFGTLIAISSFFINDLI 122

Query: 122 EPKCRSTIKQLSAKAQLA 139
            P       +L  +++  
Sbjct: 123 VPVSNHRANELLRESKEN 140


>gi|332297891|ref|YP_004439813.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
 gi|332180994|gb|AEE16682.1| permease YjgP/YjgQ family protein [Treponema brennaborense DSM
           12168]
          Length = 366

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 1/136 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R     F+ +  F   +  ++++L  +    S+      ++++    +P  
Sbjct: 11  MTLL-SYLYRRFMPVFIGALSFFSLVLILVELLMNLWQFISAQVPAADIVRVMLLYVPKT 69

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      ++ VL+      EL  +  +G S      P+L  +++LS F+F  E+ 
Sbjct: 70  VSFALPLAILFASSYVLSDFYAKNELTAVFASGVSLFRFTLPLLVFSVVLSAFMFFFEDR 129

Query: 121 IEPKCRSTIKQLSAKA 136
           +     +   +L  K 
Sbjct: 130 VVVPAYAQKTELQQKL 145


>gi|90416561|ref|ZP_01224492.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
 gi|90331760|gb|EAS46988.1| permease YjgP/YjgQ [marine gamma proteobacterium HTCC2207]
          Length = 356

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 123/360 (34%), Gaps = 8/360 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     ++ + +  +  ++ L +V +  V  I+ +   V+ +    + ++ +    +P+ 
Sbjct: 2   MHRLSWHVGKTVFAAIAVTLLVLVGLDSVGAIIDQSADVTRNYFFADAMIYVVTL-VPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    PF   +     L  +  N+E++++   G S + ++  VL   ++  I        
Sbjct: 61  IYEYIPFASLIGCLVGLGLLAGNSEVIVMRAAGVSPLRIVGFVLKPVLIFIILGMTIGEY 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF---IVD 177
             P      +      +   +       L+ R + + ++  +   P   L G+      D
Sbjct: 121 FSPYLDQLAEGKREYLRKGESAQDSSSGLWNR-EGNQFVHANAVFPGGVLYGVTRYQFND 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            R  Q     +A   + +   +  I  +  V R    S +   +  + +  +        
Sbjct: 180 ERQIQEAS--FASRATFNSTERYWIEENVSVTRFLGDSTERDKLITRRWDSELTPNVLML 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +L A+  ++  L +        +     +Y     ++  Q L  +   L+ I       
Sbjct: 238 NILPADSLSIESLYS-YIAFLELQNIDTASYEVALWRKALQPLIIIGLVLLGISFVFGPL 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
                     I +   ISF +F      +  + Q P  + +L   LFC+     L+ +  
Sbjct: 297 RDSTMGFRIFIGVVFGISFRIFQDMLGPLSVVFQFPPLLAVLVPILFCVLVGVFLLRRSG 356


>gi|325917725|ref|ZP_08179913.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536054|gb|EGD07862.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 368

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 115/369 (31%), Gaps = 27/369 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYSFGHAVAFVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEE--------NLFFRLDDDLYIKISKYNPNN----TLQG 172
            ++    L   A+     +            N F            K   N     +L  
Sbjct: 129 AQNQADTLKTSARYNSDMAMARYSGLWAREGNTFLNALGG----EEKLLANGGTALSLHD 184

Query: 173 IFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           + + +   + +  ++ YA        R  +     +V R +   + +    F     Q++
Sbjct: 185 VRLYNLDTNGRLQQLTYASVAEHRDGRWTLR----QVRRDTFQDRSVQRETFPELPWQSQ 240

Query: 232 SANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
            + ++     A  +NLS   L  +             Y  ++  R   W +P+    + +
Sbjct: 241 LSPAALASGLAKPRNLSAHELQQSIEYRRRNGLDARDYEDQYWSR---WFYPLNVLALCM 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISS 348
            A       +R       +F+ +  + G +    +           Y     L    +  
Sbjct: 298 AAIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKK 357
           +   + +++
Sbjct: 358 VSAWLFRRR 366


>gi|30468062|ref|NP_848949.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
           10D]
 gi|30409162|dbj|BAC76111.1| probable permease YjgP/YjgQ family [Cyanidioschyzon merolae strain
           10D]
          Length = 329

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 130/366 (35%), Gaps = 45/366 (12%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  FE YI   +   FL +    + + +    L  +    +   SL++  +I    +   
Sbjct: 1   MTIFEQYIWSHLWTPFLYALSACLALTFSAGALVDVMRQITQGLSLDMACQILCLQLVLS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P            ++    +L+ +  +G      +KP L    ++    +     
Sbjct: 61  IHLGLPASCVFGGIFAYANL----DLMALRTSGIGVARWLKPSLIFGCMVGWLAWQWNEW 116

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P    ++ +L  + Q  +T   L         +   I + ++ P +    +      D
Sbjct: 117 ALPLANYSLHKLQDQIQNQITSKAL-----VNQINHKLIYVKEWKPLHMNHCVMW----D 167

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
           ++ ++++ A+   ID D    I      ++               + LQ +S  +     
Sbjct: 168 SEMNQLWMAK--QIDWDGARWIAKQVVHYQWD-----------DQFQLQLQSHVAK---- 210

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYR--SEFHKRLT-----QWLFPVIFGLISIVAA 293
              +   +++            + L+ Y+  +EF+K +      ++ FP+  GL+ ++ +
Sbjct: 211 --MEWPTAWISQQQWQPMWMNVQTLKCYKQVAEFNKHIAIRYYQKYAFPISCGLLHLIGS 268

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              ++ ++        +SL + FG +  F +    + ++     ++  ++      F+L 
Sbjct: 269 SLASVSKKG-----FILSLIVLFGYYL-FGFGCEALAESSQMSALMAGWMPVAGLFFVLC 322

Query: 354 IKKKYT 359
           +  K  
Sbjct: 323 LCMKQA 328


>gi|323697853|ref|ZP_08109765.1| permease YjgP/YjgQ family protein [Desulfovibrio sp. ND132]
 gi|323457785|gb|EGB13650.1| permease YjgP/YjgQ family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 375

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 114/366 (31%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     Y++R       +       +  +  I  R++    +      +L      IP +
Sbjct: 2   IGVLSRYLIRQNLYLMAICLAVGTSLYLLSDIFDRLDDFIRAGLGAQTILFYFIVKIPLI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  + R+ E+L +   G S    I+  +  A++ S    +    
Sbjct: 62  VSQLMPAVFLLAMVVQLGVLARSREMLALRAGGVSFAWFIRFFVIYALIWSCGQLVFSQF 121

Query: 121 IEPKCRSTI-KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-- 177
           +         +      +          NL+FR    +          +    I I +  
Sbjct: 122 LGVFGEQEANRIWKEDVRKKQLDELTIHNLWFRDGPFIVQAKEAQPSKSRASDITIYEFT 181

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS--KDISIMKFKSYTLQTESANS 235
           + + +  +I  A+   ID     ++    +VH     +        +F S     ++  +
Sbjct: 182 TDNQELIRILNAKKALIDDHGWGLL----DVHELDTRTFITVDRPSQFLSVRQNLKAYAA 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +        L  L              +E   + +H +L+     V+  L+++V    
Sbjct: 238 VELKGDTAQLPLIELSR-AIARLQESGSNVEMLLTIWHGKLSYAFSMVVMALLALVLV-- 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                       I ++L + F + +G   +     +     PIL  +L       L  ++
Sbjct: 295 ---TFSENVYANIGLALILIF-IQYGMHVVGATAGEKGVLPPILAAWLGNGIMAALASLR 350

Query: 356 KKYTKI 361
             +  +
Sbjct: 351 LAWVAM 356


>gi|46446271|ref|YP_007636.1| hypothetical protein pc0637 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399912|emb|CAF23361.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 383

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 116/340 (34%), Gaps = 31/340 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y +    +         + I   ++ L  I   ++    ++ +L  + Y IP +LP
Sbjct: 4   ILWRYSINHFLKIVFACVFAFISILLTMR-LDEIANFAALGAPISYILLFAFYQIPYILP 62

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    + +   +  ++   EL  +   G +   L+ P+L  A  L+IF F   + + 
Sbjct: 63  IALPLSCLIASLIFVQRLSNTHELTALRACGFALKDLLAPILLTAAFLTIFNFWIVSEVA 122

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI------KISKYNPNNTLQ----- 171
            +       L ++ +       L      RL   LY       ++ +   +         
Sbjct: 123 TQTHLQTNILKSELRSINPLLLLNNKHLMRL-KGLYFDSLGPSRVGEMATDAVFAIPSQH 181

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDI----SI 220
                +FI       +  I+ AQ  ++       Q    +D  +      +  +     I
Sbjct: 182 HQRINLFIAKQLKA-SSSIFTAQGATLLTTTSLNQENTFDDLLIENMKKSTTHVEDFSQI 240

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSF----LLNPNPNNPNYRPELLETYRSEFHKRL 276
           ++ K +T+  +      ++++A +Q  +     L N  P              SE  KR 
Sbjct: 241 LQKKVWTVNNDYLKLPLLLIRAQEQKQALRQAKLENKKPVIVKDLKGQFHKSLSEIAKRS 300

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISF 316
           +     + F L+         + RQRK  + + + +  +F
Sbjct: 301 SIAFAVISFTLMGTAFGM--NISRQRKHKNLLIVIILTTF 338


>gi|296283031|ref|ZP_06861029.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 365

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 96/303 (31%), Gaps = 10/303 (3%)

Query: 43  TESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
             +   L   +   +P ++    P+   + T   L ++N+N+E++ +   G S   ++ P
Sbjct: 51  GNTEADLWLYASLRVPMLIQRFLPYSVLLATIITLVTLNQNSEVIAMKAAGLSAHQVLAP 110

Query: 103 VLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           ++  A+L++   F     +  +  + +    A    AL      +   +  D    +   
Sbjct: 111 LIVTALLVAGISFAFNERVVTRATAQLTAWEATEFGALPDKPKSKGSIYLEDGQNILTAR 170

Query: 163 KYNPNN---TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
            Y+      TL+ +     R           +           + +  V   +  +  ++
Sbjct: 171 SYSGGGPAPTLRDVTYY-RRSPTAEITQKVDAPMAVHGPDGWAMQNPSV--FTVGTASLA 227

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
                +       A      +    Q    L   +           E   + +  +++  
Sbjct: 228 QPSQLTVAPGITPATIELQEIDPTTQPFWQL-GSSIEAYRQAGRDTEELEANYWHKISGP 286

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
           L  V+  ++  VA     L R  +      I +++ F  F   +  +  +     Y P L
Sbjct: 287 LAAVLMPILGAVAGFG--LARSGQLFMRALIGMALGFAYFVIDNAAL-AMGDFGGYPPFL 343

Query: 340 YLF 342
             +
Sbjct: 344 AAW 346


>gi|326565139|gb|EGE15330.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 103P14B1]
 gi|326572842|gb|EGE22827.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis CO72]
 gi|326574664|gb|EGE24600.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 101P30B1]
          Length = 369

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/370 (13%), Positives = 115/370 (31%), Gaps = 20/370 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ + S T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    +     L  +  ++EL+++   G S   ++   +  A++           + 
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNQFVL 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSR 179
           P        + A        +   +  +    D      + IS  +    L  +     +
Sbjct: 124 PTANQYATAIRADTIYDKLITI--DGYWSVNHDGDSQDVVYISYADNEGGLGEVKRYQLK 181

Query: 180 DTQTHKIYYAQSG--------SIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQ 229
           D Q      A+SG         ++  +         +      +  +     + K  TL 
Sbjct: 182 DGQLIAALKAKSGVYLPQSDDVMNAQKARYTWQLSGIDEIGIGTSQVQQAHSEGKILTLP 241

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               +   +  +  D +LS L        +     L    + F ++L      +   L++
Sbjct: 242 IAPTDVYLLTKEPEDLSLSSLYAHRQLMAHQGTRSLRHELA-FWQKLLSPFAVLSLVLVA 300

Query: 290 --IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
              V    R+     + +  +   L  S+         +     +P  + ++ + L  ++
Sbjct: 301 SSFVFGSLRSQGLGLRVVLALLTGLLFSYLTDLTGFVAL-ATGLSPLLMALVPIVLSAMA 359

Query: 348 SIFLLMIKKK 357
            ++LL  K  
Sbjct: 360 GMYLLNRKSS 369


>gi|269213540|ref|ZP_06158031.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146392|gb|EEZ72810.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 181

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   + +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGATMAQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLVLSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENL 149
           I P      + + +     K     T  +L+E  
Sbjct: 121 IAPVLSQKAENIKSTAINGKISTGNTGLWLKEKT 154


>gi|260427738|ref|ZP_05781717.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
 gi|260422230|gb|EEX15481.1| permease, YjgP/YjgQ family [Citreicella sp. SE45]
          Length = 364

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 132/362 (36%), Gaps = 19/362 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R     F+           ++ ++++I        S    ++I+   +P  + 
Sbjct: 2   ILHRYFARRFFWMFMSILSVFAIFVGLVDLVEQIRKFGGD-ISFAQKVQITALRLPEGMY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL+++   G S +T +   + +A+ +S       N + 
Sbjct: 61  EILPLVMILATAALFLMLARSSELVVVRAAGRSGLTALMGPMMVALAISGVTVAMLNPLV 120

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
                    L+   +       S  +E L+ R    D    I+ ++ NP+ T L  + F+
Sbjct: 121 AATSKRASDLAESYENDGASVISIGKEGLWLRQGSSDGQAVIRAARANPDATVLYDVSFL 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTL--QTES 232
             + D    +   A   +++    A  L D +V    +  + + +  +     +      
Sbjct: 181 QYAEDGGPIRRVEAAEAALEDG--AWALRDAKVWPLGTRANPEAAAERHDRLRIASDLTQ 238

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLISIV 291
            +      K +   +  L  P+  N   +       +   F   L + +F  +  ++ + 
Sbjct: 239 NDIRDRFGKPSAVAIWDL--PDFINGLEQAGFSARRHEVWFQMELARPIF--LVAMVLVA 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A       R  +    +  ++ + FG+++  ++    + +N    P+   ++  ++S+ L
Sbjct: 295 AGFTMRPARLGRTGLYVLAAVLLGFGLYYVRNF-AQIMGENGQLPPLFAAWVPPVASLML 353

Query: 352 LM 353
            +
Sbjct: 354 AL 355


>gi|166713423|ref|ZP_02244630.1| hypothetical protein Xoryp_18790 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 368

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 115/366 (31%), Gaps = 21/366 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQGSYSFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAALALLTAIMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLAL-TFSYLEENLFFRLDD----DLYIKISKYNPNNT---LQGIFIV 176
            ++    L   A+      + L   L+ R  D     L  +    +   T   L  + + 
Sbjct: 129 AQNQADTLKTSARYNSDMAASLYAGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             DS        Y A           +     +V R +   + +    F     Q+    
Sbjct: 189 HLDSSGRMQQLTY-ASVAEHRDGHWTLR----QVRRDTFQERSVQRETFPELPWQSLLNP 243

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
           ++     A  +NLS   L  +    +        Y  ++  R   W +P+    + + A 
Sbjct: 244 AALAAGLAKPRNLSAHDLEQSIEYRSRNGLDARDYEEQYWSR---WFYPLNVLALCMAAI 300

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFL 351
                 +R       +F+ +  + G +    +           Y     L    +  + +
Sbjct: 301 PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSV 360

Query: 352 LMIKKK 357
            + +++
Sbjct: 361 WLFRRR 366


>gi|300703336|ref|YP_003744938.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299070999|emb|CBJ42308.1| putative permease, predicted YjgP/YjgQ family [Ralstonia
           solanacearum CFBP2957]
          Length = 401

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/398 (12%), Positives = 122/398 (30%), Gaps = 46/398 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGE------------------VHR 210
           ++ + I +   D +   I  AQ        Q+  L+D                      +
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQ-GHQSWELDDVTETHFVEFPRKAGAAMPQDNRQ 244

Query: 211 KSPISKDISIMKFKSYTLQTE--------SANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             P + D     F+    +          +    ++++   ++  +  L     +     
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 305 QDTQRYEIALWKKVVYPFTVLVMMALALPFA--YLHARAGAVGLKVFGGIMLGLSFQLVN 362

Query: 323 SYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKK 356
           +   H    N +      +        ++ I L  +++
Sbjct: 363 NLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVER 400


>gi|291276764|ref|YP_003516536.1| YjgP/YjgQ family permease [Helicobacter mustelae 12198]
 gi|290963958|emb|CBG39797.1| putative integral membrane protein, permease YjgP/YjgQ family
           [Helicobacter mustelae 12198]
          Length = 338

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 130/355 (36%), Gaps = 25/355 (7%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           F+ Y+   I + F    + + FI+ V+ ++   N+      +   LL +  YL+P  +  
Sbjct: 2   FKNYLFGSIAQIFFPFFIVLFFISSVVLLISIANITLVVKMNFMDLLLVFLYLMPGTVFF 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P  F       L+ ++ + ELL+  + G S   ++   + +A ++S+ L      + P
Sbjct: 62  IIPITFFAACVLGLSRLSFDYELLVFFSLGVSPRKILAYFIPIAGIVSLVLLFFSLALIP 121

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             +S      A+ +  +  + +      +   D  + I     +N  + + +    D   
Sbjct: 122 LSKSAYSDFIAEKRTKIDVN-IRAGDLGQKLGDWLVYIDSI-KDNEYRDLVLFSGSDLGQ 179

Query: 184 HKIYYAQSGSIDLDRQA--IILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
                AQ G ++       + L +G+ +     + ++  + F++  +Q+E    +     
Sbjct: 180 ESFVVAQKGRVENLAGVFRLSLQNGDAY--FAKNNELQKVNFQNMMIQSEIKKINLSSYD 237

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                             Y     E  +S+  +R +Q +   +F L SI       +   
Sbjct: 238 L---------------VAYWKSAFEGKKSQA-RRFSQAIMTSLFPLASIFFIPLFGIANP 281

Query: 302 RKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R + +   +S         G+   +H + +N  +  I  L L      +    KK
Sbjct: 282 RFQRN---LSYVYILSAVVGYFAGVHILSENAPFFGIFALPLAWFFLGYYFFRKK 333


>gi|83746688|ref|ZP_00943737.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|207742607|ref|YP_002258999.1| permease protein [Ralstonia solanacearum IPO1609]
 gi|83726641|gb|EAP73770.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|206594001|emb|CAQ60928.1| permease protein [Ralstonia solanacearum IPO1609]
          Length = 401

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/398 (12%), Positives = 122/398 (30%), Gaps = 46/398 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGE------------------VHR 210
           ++ + I +   D +   I  AQ        Q+  L+D                      +
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQ-GHQSWELDDVTETHFIEFPRKAGAAAPQDNRQ 244

Query: 211 KSPISKDISIMKFKSYTLQTE--------SANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             P + D     F+    +          +    ++++   ++  +  L     +     
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 305 QDTQRYEIALWKKVVYPFTVLVMMALALPFA--YLHARAGAVGLKVFGGIMLGLSFQLVN 362

Query: 323 SYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKK 356
           +   H    N +      +        ++ I L  +++
Sbjct: 363 NLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVER 400


>gi|170692023|ref|ZP_02883187.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
 gi|170143307|gb|EDT11471.1| permease YjgP/YjgQ family protein [Burkholderia graminis C4D1M]
          Length = 382

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 128/382 (33%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R +  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQVYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           + P      +++  +A  +   S  +  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 VGPYTDQLSERVRLEALGSSVSSNFQSGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSID-LDRQAII-LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  A+SG         +  + D ++    P S             
Sbjct: 181 NVRIYEFDSKFRLSNVRIAKSGVYQPPGHWQLTGVTDTQLIDVPPPSGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +    Y+L++E +    +++L + D+   F L     +     +  + Y     +++ 
Sbjct: 241 RQVALPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFA--YLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKKKYT 359
           +       +  + L ++  K+ 
Sbjct: 359 LTAATP-GLVYLVLGLVGLKWV 379


>gi|126725341|ref|ZP_01741183.1| putative permease [Rhodobacterales bacterium HTCC2150]
 gi|126704545|gb|EBA03636.1| putative permease [Rhodobacterales bacterium HTCC2150]
          Length = 365

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 133/367 (36%), Gaps = 24/367 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R    +FLM       I ++I +++++   SS++  +    +++    P  L 
Sbjct: 2   ILHLYFARKFITNFLMILFVFFGIIFLIDMVEQLRRFSSNSVGMKEAAQLALLNAPGNLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +  ++ R +EL+I   +G S +  +   L +   L +F     N I 
Sbjct: 62  RILPLLVILSTLALFLNLTRTSELVIARASGRSALGALLAPLLVTFTLGVFGVSVWNPIG 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLE---ENLFF---RLDDDLYIKISKYNPNNTLQGIFIV 176
               + + +  +   L    + L    E L+     ++    I  ++ N N T+ G    
Sbjct: 122 -AATANLYETISDRHLGRASNALSIGAEGLWLRQGNVEGQTVIHANETNQNGTILGNVTF 180

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR-KSPISKDISIMKFKSYTL--QTESA 233
            + D  +  IY  ++ +  L+    +LND +    K  ++ ++S     +  L       
Sbjct: 181 LAFDINSQVIYRIEAKTAKLETGGWVLNDTKRWDFKDTLNPELSASTTDTIRLQSNLTQK 240

Query: 234 NSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                    +D     L   +    N      +    Y +E    L    F +   LI  
Sbjct: 241 EIQESFGAPSDIPFWELPAFIASLENAGFSSTQHRVWYATE----LALPAFLMAMVLIG- 295

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL---YLFLFCIS 347
            A       R  K    +  ++ + FG+F+  ++   ++  N   IP+L   +       
Sbjct: 296 -AMFTMRHSRFGKTGIMLLGAIVMGFGLFFLKNFA--QVLGNSGQIPVLLAAWTPPLAGI 352

Query: 348 SIFLLMI 354
            + L  I
Sbjct: 353 LLALGFI 359


>gi|149186432|ref|ZP_01864745.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830021|gb|EDL48459.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 365

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 108/324 (33%), Gaps = 14/324 (4%)

Query: 38  LVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
           +++        LLK +   +P ++    P+   + T   L ++N+N+E++ +   G S  
Sbjct: 46  ILAVEGNGQGELLKYASLRVPQLIQRFLPYSVLLATLISLVTLNQNSEVIAMKAAGLSAH 105

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT-FSYLEENLFFRLDDD 156
            ++ P+L  A+++    F+    +  +  +T+K   A     +   S +  N++     +
Sbjct: 106 QVLAPLLLTALVVGGVSFVFNERVVTRATATLKAWDAADWGPVPEESSVRANVYLADGSN 165

Query: 157 LYIKISKYNPNN---TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP 213
           + +  ++   +     ++ +     R  +   +    +           L +  + R   
Sbjct: 166 V-LTAAQLTGSGDAIRMRDVTWY-RRSPEGTIVEQVDAARATYAGPGWRLEN--IERFEV 221

Query: 214 ISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFH 273
            +   S                    +  +      L     +            R+++ 
Sbjct: 222 AAAASSTGDSLVVGEGLTPDQIDLAKIDPDAVPFWEL-GERIDAFEDAGRRTGEMRAKWW 280

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIE 330
            +L+  L   +  L+  VAA    L R  +      I +++ F  F        + +   
Sbjct: 281 HKLSGPLSSFLMPLLGAVAAFG--LARSGQLFVRALIGMALGFAYFVVDNAALAMGNFGG 338

Query: 331 QNPYYIPILYLFLFCISSIFLLMI 354
             P        FLF +    +L+ 
Sbjct: 339 YPPLLAAWAPFFLFALIGETVLIR 362


>gi|207721412|ref|YP_002251853.1| permease protein [Ralstonia solanacearum MolK2]
 gi|206586571|emb|CAQ17158.1| permease protein [Ralstonia solanacearum MolK2]
          Length = 401

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/398 (12%), Positives = 122/398 (30%), Gaps = 46/398 (11%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  +E Y  R I   F+     ++ +     +L  +  V     +L     +     PT 
Sbjct: 7   MPVYEKYFARQIYGVFVFILFAVLALFIFFDMLSELGSVVGRYTTLIAFFHVM-LQAPTR 65

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P    +    V + M   +E  I    G      +  +  +A+ L++  ++    
Sbjct: 66  VYEVIPVAALISAIYVFSQMASQSEFTIFRVAGLDTRGALLSLFKIALPLALVTYVFGEF 125

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD------LYIKISKYNPNNT 169
           I PK     +++  +A  A   +     ++ +       D        ++ +    P+ T
Sbjct: 126 IGPKSEQFAQKVRLEALGATVSAEFRSGVWVKDRGPARPDGSGGEVTRFVNVGSLQPDQT 185

Query: 170 LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGE------------------VHR 210
           ++ + I +   D +   I  AQ        Q+  L+D                      +
Sbjct: 186 IRSLRIYEFDADYRLSSIRVAQQARYQ-GHQSWELDDVTQTHFIEFPRKAGAAAPQDNRQ 244

Query: 211 KSPISKDISIMKFKSYTLQTE--------SANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             P + D     F+    +          +    ++++   ++  +  L     +     
Sbjct: 245 AVPGAPDALAPDFRGEQTKLPKQEMRSELTPQILSVLMVTPERMATLDLFQYIRHLRDNK 304

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
           +  + Y     K++      ++   +++  A      R       +F  + +        
Sbjct: 305 QDTQRYEIALWKKVVYPFTVLVMMALALPFA--YLHARAGAVGLKVFGGIMLGLSFQLVN 362

Query: 323 SYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKK 356
           +   H    N +      +        ++ I L  +++
Sbjct: 363 NLFSHVGLLNTWPAIFTAIVPGALYLAVALIALRWVER 400


>gi|291296718|ref|YP_003508116.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
 gi|290471677|gb|ADD29096.1| permease YjgP/YjgQ family protein [Meiothermus ruber DSM 1279]
          Length = 346

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 113/342 (33%), Gaps = 15/342 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+++ +G S L +   +V       + + +  + +      ++ +   + +P  
Sbjct: 1   MSVLDRYLIKEVGASVLGALAVVVLALLGGALYEVLAPLLARGADPWVVSQYLAFRVPEA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F      VL+ M   +EL  +   G S++ ++ P+L L  LL +    + + 
Sbjct: 61  LVRGAPLAFLFALLLVLSRMGEESELKAMLAGGVSKLRVLFPLLLLGTLLFVICLAAADS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+     + +  +A L    + L+            + + + +         I   R 
Sbjct: 121 LVPRSLQQGQNVLRQAVLQKPRALLQPGTRLVDAYGRIVYVGEVSDAG------IGQVRV 174

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
               +I  A+ G    ++  ++L+ G            ++ +F+  T+     +      
Sbjct: 175 ITAEEILVAEQGRF--EQGTLVLSQGMRVTYGGARPR-TVARFERATVPLVELSLEPPGG 231

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
             +       L         +        +  H++  +      F + ++  A       
Sbjct: 232 LFS--LTVAELRQRIAQYRAQGLPYHAELTALHRKWAEPAAVYSFAIFAVGLA----FFL 285

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
                    + + +   +++    +   + +     PIL  +
Sbjct: 286 LGGSRSLGMLGVVVLTFIYYATWSVGRIMGEQGVLHPILAAW 327


>gi|301168568|emb|CBW28158.1| putative transport-related membrane protein [Bacteriovorax marinus
           SJ]
          Length = 368

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 126/381 (33%), Gaps = 34/381 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M      IL+     F      ++ +  ++ +   I+       +   ++      IP  
Sbjct: 1   MGILRKLILKEW---FKFFAGSVIALFLLVSVANLISGFLRGNVTATEVMINHFIEIPGY 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    M +   +  +   +EL  I   G SR   I  ++F +++++I  F+  + 
Sbjct: 58  LNKIFPVSCLMASLFSINKLKTRSELTAIFAAGYSRKNYIIDLIFASLIVTIVQFMMTSY 117

Query: 121 IEPKCRSTIKQLSAKA--------QLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQ 171
           I P  +S  + L +++           L  S +     +   DD +I  + YN     L 
Sbjct: 118 ISPFFKSQRENLISESTHKFSNLKSQGLRSSTIGSGKMWYRSDDYFIAFTNYNQIKKELY 177

Query: 172 GIFIVDSRDTQTHKIYYA------QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS 225
            + +         +   A      + G I + +  I L+   +       ++      K 
Sbjct: 178 NVTLYKLSADSYLEEIQAMQKVYWEKG-IWIGKNVIKLDGLNLKSFPKAEEN------KE 230

Query: 226 YTLQTESANSSTIVLKANDQNLSFL----LNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
             +           L+  + +++ L    L    +        +  Y   F+ +    + 
Sbjct: 231 NIINLYETPEE---LRQIEADITILNIVKLWKYIDQLKTSGININEYMVLFYDKFANSII 287

Query: 282 PVIFGLISIVAA--DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
            +IF +++ V+     R      K I  +F    + + V+     + +  +  P      
Sbjct: 288 CIIFAILASVSVFNPNRRSSSFGKNIAAVFFFTILYWLVYSYLIELGNNSKVPPIAATFT 347

Query: 340 YLFLFCISSIFLLMIKKKYTK 360
               F I  I +    +K  K
Sbjct: 348 VPIAFTIILIVIFSRNRKLAK 368


>gi|221211523|ref|ZP_03584502.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221168884|gb|EEE01352.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 326

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 27/318 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRLYEKYFARQIYVTFIFILFAFSGLFFFFDLISELNSVGHGNYKFGYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + + L I  ++    
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEFTIFRVSGLATNQALRSLLKIGVPLVIVTYLIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLF-------FRLDDDLY--IKISKYNPNNTLQ 171
           + P      +++  +A  A   S  +  ++           + +   + +    P++T+ 
Sbjct: 121 VGPYADQLSERVRLQALGASVSSNFQSGVWVKDTLAARENGEQVTRFVNVGSLAPDSTIS 180

Query: 172 GIFIVDSRDT-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-------------D 217
            + I +     Q   +  AQ+G  +      +L        +PI                
Sbjct: 181 NVRIYEFDAKFQLKNVRIAQTGRYEP-PGHWLLKGVTETELTPIQPIAGQAPDALNPVYR 239

Query: 218 ISIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              +    Y L         S +++     ++  L      +     +  + Y     ++
Sbjct: 240 SQQVSLPEYRLRSDLTPQILSVLLVSPERMSIINLFR-YIQHLRENHQDTQRYDIALWRK 298

Query: 276 LTQWLFPVIFGLISIVAA 293
           L       +  ++S+  A
Sbjct: 299 LLYPFAVFVMLVLSLPFA 316


>gi|239809483|gb|ACS26209.1| unknown [uncultured bacterium]
          Length = 291

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 103/296 (34%), Gaps = 9/296 (3%)

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + P    +     L ++  ++EL I+   G S   ++  V+   ++L I   +    + P
Sbjct: 1   MLPMAALIGCLIGLGTLASSSELTIMRAAGVSLGRIVVAVMKPMLVLLIAGILIGEYVAP 60

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                 +   + AQ A      +  L+    ++ ++ ++   P   L G+      D + 
Sbjct: 61  ATEDIAQARRSLAQGAGEAQSSKRGLW-HRQENEFVHVNAVQPGGMLVGVTRYRFDDERR 119

Query: 184 HK-IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
                +A+  S   D    +L +           ++     + + +Q       T+V++ 
Sbjct: 120 LLSSSFARRASYQADH--WLLENISTTHFRGDHTEVVRTPQERWDVQLTPQLLGTVVMEP 177

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
              +++ L     +    +      Y   F  ++ Q    V   L++I        +R  
Sbjct: 178 EALSITGL-WRYIHYLGEQGLNNGRYWLAFWTKVLQPAVTVALVLLAISFIFGP--LRSV 234

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISSIFLLMIKKK 357
                IF  + + F VF     ++    Q   + P+L +     I ++    + ++
Sbjct: 235 TLGQRIFTGVVVGF-VFRIIQDLLGPASQVFGFSPLLAVVLPAGICALIGAWLLRR 289


>gi|148255227|ref|YP_001239812.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146407400|gb|ABQ35906.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 365

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 125/365 (34%), Gaps = 26/365 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y       S   +      I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 6   NTLGRYFAGRFLVS---AVGVFASIFVLLVLVDYIEMVRKTSGLASASALMVAETSLFRV 62

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + PFC  +       +++R  EL++    G S    I P L  AI+L +     
Sbjct: 63  PQLLEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTL 122

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENL-F----FRLDDDLYIKISKYNPNN-TLQ 171
            N +    R   K++ A+   A     +++   F       D  + I  ++       L 
Sbjct: 123 YNPMSANLRELSKRMEAELFGAAPGGGVQDASGFWLNQINPDGSVIINAARSEQQGVRLT 182

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ +     +        A+  +++  +         V R S  +  +    F    L T
Sbjct: 183 GLTLFRFDTEKHFKDRIEAREATLEDGQWVFK----SVRRFSLDAPPVDEPTF---ILPT 235

Query: 231 ESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               +      +  + +SF   P+   +          YR ++HK + Q    ++  ++ 
Sbjct: 236 SLTPAQVRNSFSTPETVSFWQLPSYIRSSESSGFATAGYRLQYHKLIAQPF--LLAAMVM 293

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF-LFCISS 348
           + A+      R       +   +   F ++   S +   + +     PI+  +    +  
Sbjct: 294 LAASVSLRFFRMGGVQKMVLSGVGAGFLLYV-LSKVTEDLSKAALMDPIVAAWLPVFVGG 352

Query: 349 IFLLM 353
           +   M
Sbjct: 353 LTGFM 357


>gi|54113817|gb|AAV29542.1| NT02FT0415 [synthetic construct]
          Length = 353

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +    N    GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|30248806|ref|NP_840876.1| hypothetical protein NE0802 [Nitrosomonas europaea ATCC 19718]
 gi|30180401|emb|CAD84713.1| putative membrane protein [Nitrosomonas europaea ATCC 19718]
          Length = 355

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 14/361 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +    +++   ++ +     +L +++ V   T +       +  L+P  
Sbjct: 1   MKICHRYIAWQVLTGMVIATAILLPLFSFFDLLDQLDDVGKGTYTTWDAFLYTVMLMPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   + T   L ++  N EL+ +   G S + +    + +  LL       E  
Sbjct: 61  FIQIAPFIALLGTVGALGALAVNLELVAMRVAGLSPLMIGLAPVGIGGLLIASTIALEYF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P+ +     L A A            ++ R + ++ ++I +         I  I    
Sbjct: 121 VAPQFQQQATILRAVALEQGAELGKGLGIWTRNERNI-LRIGEMLHKGRATDIEVIHFDG 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ---TESANSS 236
           +       +A    I  D     L+D  +   SP      I   K++ LQ       +  
Sbjct: 180 EGSMTAHVHAWYADI-FDESLWKLHDVTIRTFSPD----RITSRKAHILQWHSFLGPDDI 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K+ +      L  +        +  + Y     +++   +  +   L++I      
Sbjct: 235 ATLTKSPESLTPIELVKHAEFLRATGQKADAYVMALWRKVGGAIMTIAMILVAIPFIFG- 293

Query: 297 ALVRQRKKIHPIFISL-SISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMI 354
             VR+      I  +L  IS  +F      I  + Q NP  + ++   +    +   L+ 
Sbjct: 294 -SVREGLGGKLILAALMGISIYLFDQIIANIGLVFQLNPIVVSVVPGMVLIAVAAHWLLR 352

Query: 355 K 355
           +
Sbjct: 353 R 353


>gi|297620917|ref|YP_003709054.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
 gi|297376218|gb|ADI38048.1| putative permease, YjgP/YjgQ family [Waddlia chondrophila WSU
           86-1044]
          Length = 359

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 113/352 (32%), Gaps = 54/352 (15%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K +E Y ++   ++F         +  +I         +   +S+    ++  +     +
Sbjct: 4   KIWERYFIKETLKTFFFISFCFYGLYVLIDYASHSG--ARHHQSMMEWSELIKFYANEWI 61

Query: 62  P---MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
               ++ PF   + T   L  +N + EL+ +  +G S   +++P +FL +L ++ ++ + 
Sbjct: 62  LRADVLVPFALMIATIRTLCDLNIHNELVALQASGISLKKILRPFIFLGLLFTLLIYANT 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
             + P   +  + L  +                + + +    +             + D 
Sbjct: 122 EFLLPNAMAASRHLRNQ------------KEIQKNNKNKKFFVQHVG---------LKDG 160

Query: 179 RDTQTHKIYYAQSGSIDL------------------DRQAIILNDGEVHRKSPISKDISI 220
                    +A+    D                   ++    +  G   R  P +    I
Sbjct: 161 STLLYQHYNFAERSFFDAYWVKSFDEIWRFQHLSPYEQPPKGIGVGHFQRM-PDNTLHKI 219

Query: 221 MKFKSYTLQTESANSS---TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             F+S +      N       +  + + +LS L    P++     E    + + F  +  
Sbjct: 220 ESFESRSFPEMKFNQKILLDTLTPSRELSLSTLWKRLPHSKEIESEKEAEFAASFFHKSA 279

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
                  F +I+         VR  +  HPIF   S+S     G   I++  
Sbjct: 280 LPWLCF-FAVIA----PAPFCVRYGRS-HPIFFIYSLSLFFLVGSYLILNAA 325


>gi|296116657|ref|ZP_06835267.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976869|gb|EFG83637.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 371

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 117/365 (32%), Gaps = 26/365 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R    + L    F+  +  +   +  +  VSS      +++ +I+   IP  +
Sbjct: 6   TLSLYIARQFTYAVLAVIAFLTGLITLFDFIDLLRRVSSRPNVPASLVSEIAVLHIPFAM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A+L+        + +
Sbjct: 66  LEILPFGVLLGGIICFWRLARSSELVVARAAGISAWQFLAGPVGCALLIGALSTTVISPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE----ENLFFRLDDDLY------IKISK-YNPNNTL 170
                   + L  +     T   +          + D  L       I   +    +N +
Sbjct: 126 SSAMYRRAEILDQQYLRESTVKTINMSGGALWMRQSDSGLVDHGVAIIHARRVRLRDNVM 185

Query: 171 Q----GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
           +     IF +D +D    +   A  G +   R  +     E  R     ++   M   + 
Sbjct: 186 RISGISIFRLDGQDHMLAR-IEAGHGYLGNGRWVL-----EGARLLHPDENPVDMGHMTL 239

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
                 A     +   N  ++  L        N        +R  F   LT  +      
Sbjct: 240 RADLTLAGVQDSLASPNTLSVWALPG-FIKLLNRSGFSSIRHRLRFQSLLTLPVLCGTMA 298

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++  A       R+   +  I + +   F +F   S I  +  ++    P+L  +    
Sbjct: 299 LVA--AGFSMRPARRGGVVRMISLGVGAGFALFAI-SKIAAQFGESGALPPVLAAWAPTG 355

Query: 347 SSIFL 351
           + + L
Sbjct: 356 AGLCL 360


>gi|325278208|ref|ZP_08143701.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
 gi|324096648|gb|EGB95001.1| permease YjgP/YjgQ family protein [Pseudomonas sp. TJI-51]
          Length = 241

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 74/202 (36%), Gaps = 3/202 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI + +  + L     I+ +A +   +  +  + S T ++           P  
Sbjct: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDL-SDTYTVMQAGYYVLLTAPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L S+  ++EL I+   G S   ++  V+   ++L +   +    
Sbjct: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIF-IVDSR 179
           + P   +  +   + AQ        +  ++ R  ++ ++ I+   PN  L G+       
Sbjct: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEE-FVHINAVQPNGLLLGVTRYRFDS 178

Query: 180 DTQTHKIYYAQSGSIDLDRQAI 201
           + +     +A+      D   +
Sbjct: 179 ERKIQTSSFARRAQYTDDHWLL 200


>gi|167645642|ref|YP_001683305.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348072|gb|ABZ70807.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 354

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 115/364 (31%), Gaps = 26/364 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY+LR +G   L + L +  I  ++ +L+    +         +L  +    P ++ 
Sbjct: 2   KIQLYVLRTVGTRVLGAGLILFSILQILDLLEVTTDIIDRGLGTAGVLYYAALRSPRLVE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P           + + R   ++ +  TG S   ++   L +  L+    F    II 
Sbjct: 62  QVAPLATLAGGLFAFSQLARENAIIAMRATGISAYRIVGMALPVVFLVMALDFSCAQIIA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+    +         A          F R  DDL I         TL  + I   RD  
Sbjct: 122 PRTDPVLADWWQATTPAAERKVPGPRSF-RAGDDLVIAAGASADGGTLNAVKIY-RRDKI 179

Query: 183 THKI--YYAQSGSIDLD------RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
              I    A S S +        +  I+   GE     P ++           +Q   A+
Sbjct: 180 GRLIERIEAPSASYNSGGGWTLAKPVIVRFKGEQVNVVPAAQLSWPSPLHRQDVQALFAD 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           S         + L                    Y + F          ++  L+S   A 
Sbjct: 240 SPVPTAATARRALL---------SGGGDRPAAFYETRFLSAFAGPFAALVMLLLSAPVAL 290

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIF 350
                 Q   +    ++  + F V  G   ++  + +     PIL ++    +F   +++
Sbjct: 291 ANFRSGQGAGLLAGGLAAGLLFLVVNG---MLSALGEGGSLSPILAVWGGPVIFAALAVY 347

Query: 351 LLMI 354
            L++
Sbjct: 348 ALVV 351


>gi|16125935|ref|NP_420499.1| hypothetical protein CC_1690 [Caulobacter crescentus CB15]
 gi|221234698|ref|YP_002517134.1| hypothetical protein CCNA_01761 [Caulobacter crescentus NA1000]
 gi|13423101|gb|AAK23667.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220963870|gb|ACL95226.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 368

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 119/353 (33%), Gaps = 20/353 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPT 59
           M   E Y+L+    + + +   +  +  +I  +     V +    S   LL ++    P 
Sbjct: 5   MGMLERYVLKRTMGALVGALAVLSAMVMLIAFVDIARNVGTRADASFLRLLYLTILQAPA 64

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + ++ PF F   T      +NR +EL+ +   G S    I P    + ++ +      N
Sbjct: 65  TILVLAPFIFLFGTMWAFVELNRRSELIAMRAAGISAWRFIMPAAASSFVIGLLTITLLN 124

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNTLQGIFIVDS 178
            +     +  +    +           +  + R  DD   I I           + +   
Sbjct: 125 PLTTAMTAKFETERDRTMNGYLKEA-PKGTWLRQGDDKTQIVIRARARELVDGSVRL--- 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R            G +D  R+     +    R  P    +S ++  +       ++S +I
Sbjct: 181 RGVSLFVYTLNAKGVMDFTRR----IEANEARLEPGFWRLSGVREATPGAGAIRSDSLSI 236

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSE-------FHKRLTQWLF-PVIFGLIS- 289
               +D+  S   N       +R        ++       F  RL Q L  P++F  +S 
Sbjct: 237 PSNLDDRTASERFNTPQAVALWRLPATIQRTADAGFSAVPFKLRLQQDLATPLLFAAMSV 296

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           + AA    L+R           +++ FG F+ F+ +   + +     P +  +
Sbjct: 297 LAAAFSLRLMRLGGLAMLAGSGVALGFGFFF-FNELCSTLGRADVLAPFVAAW 348


>gi|49474100|ref|YP_032142.1| hypothetical protein BQ04620 [Bartonella quintana str. Toulouse]
 gi|49239604|emb|CAF25961.1| Hypothetical transmembrane protein [Bartonella quintana str.
           Toulouse]
          Length = 364

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 115/364 (31%), Gaps = 30/364 (8%)

Query: 3   SFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y      +    F  S   + F+    +   R++ + S   +      IS   IP 
Sbjct: 5   TLGRYFFVRYLKMTCYFFGSIFVLAFLIDFTENSSRLSYLPSY--TAKDAFLISVLRIPF 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF        +L S+NR  EL++  + G S    + P  F A L  +F  +  N
Sbjct: 63  IMQQLIPFIALFSAMAMLISLNRKCELVVTRSIGVSAWQFLMPACFGAFLFGLFSILLVN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF------FRLDDDLYIKISKYNPNN--TLQ 171
            +     S  ++++ + +     +                 D   I            + 
Sbjct: 123 PLAAWGFSQAEKMTTEWRSNNVLTSFHNTRIIPWLTQRTNSDRTTIGAKSITDQGLSLID 182

Query: 172 GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             F+  + +         +  ++       +L +G +++     +     KF  + ++T 
Sbjct: 183 ATFVQYNDNATVKNWINTRKATL--TNGVWLLTNGTIYKIGHPPE-----KFTEFQIKTN 235

Query: 232 SANSSTIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                     AN   + F   P       +  Y     + Y       +      +   L
Sbjct: 236 LKPEFLTERLANPATIPFYQLPKKIMIARSFGYSANNFDMYLQSL---IALPALLIAMTL 292

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           I+  A       R  +    IF  +   F ++   S ++       Y  PI+  +   I 
Sbjct: 293 IA--ATVSLNFTRFGQSGTLIFGGVIAGFTLYVI-SVLVQAFGNAGYMPPIIAAWTPVII 349

Query: 348 SIFL 351
           ++FL
Sbjct: 350 ALFL 353


>gi|21244279|ref|NP_643861.1| hypothetical protein XAC3554 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109927|gb|AAM38397.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 368

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 113/369 (30%), Gaps = 27/369 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V  +      +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNALASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLA-------LTFSYLEEN-LFFRLDDDLYIKISKYNPNNT---LQGI 173
            ++    L A A+             +  E   F         +    +   T   L  +
Sbjct: 129 AQNQADTLKASARYNSDMASSRYAGLWAREGDTFLNALSG---EEKLLDGGGTALDLHDV 185

Query: 174 FIV--DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            +   DS        Y A        R  +     +V R +   + +    F     Q++
Sbjct: 186 RLYHLDSSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQ 240

Query: 232 SANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              ++     A  +NLS   L  +             Y  ++  R   W +P+    + +
Sbjct: 241 LNPAALAAGLAKPRNLSAHDLEQSIEYRRRNGLDARDYEDQYWSR---WFYPLNVLALCM 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISS 348
            A       +R       +F+ +  + G +    +           Y     L    +  
Sbjct: 298 AAIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKK 357
           +   + +++
Sbjct: 358 VSAWLFRRR 366


>gi|203288235|ref|YP_002223250.1| hypothetical protein BRE_818 [Borrelia recurrentis A1]
 gi|201085455|gb|ACH95029.1| conserved hypothetical integral membrane protein [Borrelia
           recurrentis A1]
          Length = 429

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 84/204 (41%), Gaps = 3/204 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +E YI+    + F ++ LF +F+ ++ QIL  + ++  +  S         Y +P V+ +
Sbjct: 8   YESYIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNYVSFFKAFIFVIYSLPMVVAL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF   +     +     N E+L   + G S   L+ P L L +++++  FI  + + P
Sbjct: 68  SPPFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  ++    +  +    L+     +   DL     + +        F  ++R    
Sbjct: 128 LGSIGRLKIFNDIKEEIPHLILKPYS-SKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGY 186

Query: 184 HKIYYAQSGSIDLDRQAI--ILND 205
            +I+ A+  +I  +   +  ILN+
Sbjct: 187 DRIFMAKELNIQKENHQVYFILNN 210


>gi|325292486|ref|YP_004278350.1| permease protein [Agrobacterium sp. H13-3]
 gi|325060339|gb|ADY64030.1| putative permease protein [Agrobacterium sp. H13-3]
          Length = 362

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 114/358 (31%), Gaps = 18/358 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y L+    + +   L +  I ++    +    +SS    S+   L ++   +P +
Sbjct: 4   STLARYFLKRYLITAIWFLLGVSAIIYLADFSETARRMSSVPGYSVPGALGLTALRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF         L S+NR  EL++    G S    I P +  A+ L I   +  N 
Sbjct: 64  LQQTIPFIALFVGMTTLISLNRRYELVVTRAAGVSAWQFILPFVLGAVFLGILSVLVLNP 123

Query: 121 IEPKCRSTIKQLSA----KAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL--QGIF 174
           I    ++    + A    +         +          D  I    +  N T+    + 
Sbjct: 124 IAAWGQNRSLSMEAGWRNEGSGGRQQDIIPWMRQSSGGQDTIIGAKSFEDNGTMLLDVVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I   +D        A+S  +        L +G    ++           +S  + T    
Sbjct: 184 IHLDKDGNIVSRQDAKSAKL---EDGYWLLNGVAETRAGHVPVRQ----ESTRISTNLRR 236

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     + ++F  L+             +   +++H  L+  L  V   LI+  A 
Sbjct: 237 EFVQERMTQTETVAFFDLSHKIEVAKSFGLSSKALETQYHFLLSTPLLLVAMTLIA--AT 294

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R  +    I   +   F ++   + ++          P + +++  I ++ L
Sbjct: 295 VSLKFSRFAQSRSVILGGIVSGFVLYVV-TVLVRAFGSGGVVPPTVAVWVPVIVALAL 351


>gi|121601841|ref|YP_988822.1| YjgP/YjgQ permease [Bartonella bacilliformis KC583]
 gi|120614018|gb|ABM44619.1| putative permease, YjgP/YjgQ family [Bartonella bacilliformis
           KC583]
          Length = 363

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 119/361 (32%), Gaps = 25/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
               Y      R      L    +A++I  ++  + ++S    +    L IS   IP ++
Sbjct: 5   ILGRYFFIQYLRITCYFLLGAFILAFLIDFIENSSRLTSLPHYTTKGALLISFLRIPLIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+NR  EL+I  + G S    + P  F A  L +      N  
Sbjct: 65  QQLFPFIALFSAITMLISLNRKFELVIARSIGVSAWQFLMPACFGAFFLGLVAIFLFNPF 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENL---FFRLDD--DLYIKISKYNPNN--TLQGIF 174
                S  +++ A+       + L  +    F +  D     I            +  IF
Sbjct: 125 AAWGYSQAEKIIAEWHSNNVQTSLNNHRIPWFTQHTDLGTTTIGAKSITDEGLSLINAIF 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +  + D       +AQ  ++     A  L  G +++   I +     KF  + ++T    
Sbjct: 185 VQYNEDATIKNWIHAQKATL--TNSAWFLTHGTIYKTGHIPE-----KFAEFWIETNLKP 237

Query: 235 SSTIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                  A+    SF   P       +  Y     + Y       +      V   LI+ 
Sbjct: 238 EFLTEYLADPATTSFYKLPKKIAVARSFGYSANKFDMYLQSL---IALPALLVAMTLIA- 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R  +    I   +   F ++   S ++       Y  PI+  ++  I ++F
Sbjct: 294 -ATVSLKFTRLEQSGKLILSGVIAGFVLYVI-SVLVRAFGNAGYIPPIIAAWVPVIIALF 351

Query: 351 L 351
           L
Sbjct: 352 L 352


>gi|307728895|ref|YP_003906119.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
 gi|307583430|gb|ADN56828.1| permease YjgP/YjgQ family protein [Burkholderia sp. CCGE1003]
          Length = 382

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 128/382 (33%), Gaps = 26/382 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ +E Y  R I  +F+        + +   ++  +N V          +       P+ 
Sbjct: 1   MRIYERYFARQIYLTFIFILFAFSGLFFFFDLINELNSVGHGNYKFQYAVLRVALQTPSR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   M  N+E  I   +G +    ++ +L + I L    ++   +
Sbjct: 61  FYEIIPVAALISAIYVFAQMAANSEYTIFRVSGLATNQALRSLLKIGIPLVFLTYLIGEV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL-----DDD----LYIKISKYNPNNTLQ 171
           I P      +++  +A  +   S  +  ++ +       D      ++ + +  P+ T+ 
Sbjct: 121 IGPYTDQLSERVRLEAMGSSVSSNFKSGVWVKDTLTARADGEQVTRFVNVGELKPDATIS 180

Query: 172 GIFIVD-SRDTQTHKIYYAQSGSID-LDRQAII-LNDGEVHRKSPISKDI---------- 218
            + I +     +   +  AQSG         +  + D ++    P +             
Sbjct: 181 NVRIYEFDSKFRLSNVRIAQSGVYQPPGHWRLTGVTDTQLIDVPPPAGTPADALNPVYRA 240

Query: 219 SIMKFKSYTLQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLT 277
             +    Y+L++E +    +++L + D+   F L     +     +  + Y     +++ 
Sbjct: 241 KQVVLPEYSLRSELTPQILSVLLVSPDRMSMFNLFRYIQHLTENHQDTQRYEIALWRKVL 300

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 +  ++S+  A      R       +F  + +        +   H    N +  P
Sbjct: 301 YPFAVFVMLVLSLPFA--YLHTRAGVVGMKVFGGIMLGMSFQLFNTLFSHIGTLNTWPAP 358

Query: 338 ILYLFLFCISSIFLLMIKKKYT 359
           +       +  + L ++  K+ 
Sbjct: 359 LTAATP-GLVYLVLGLVGLKWV 379


>gi|294625210|ref|ZP_06703851.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664572|ref|ZP_06729914.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600484|gb|EFF44580.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605656|gb|EFF48965.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 368

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 112/369 (30%), Gaps = 27/369 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLA-------LTFSYLEEN-LFFRLDDDLYIKISKYNPNNT---LQGI 173
            ++    L A A+             +  E   F         +    +   T   L  +
Sbjct: 129 AQNQADTLKASARYNSNMASSRYAGLWAREGDTFLNALSG---EEKLLDGGGTALDLHDV 185

Query: 174 FIV--DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            +   DS        Y A        R  +     +V R +   + +    F     Q++
Sbjct: 186 RLYHLDSSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQ 240

Query: 232 SANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              ++     A  +NLS   L  +             Y  ++  R   W +P+    + +
Sbjct: 241 LNPAALAAGLAKPRNLSAHDLEQSIEYRRRNGLDARDYEDQYWSR---WFYPLNVLALCM 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISS 348
            A       +R       +F+ +  + G +    +           Y     L    +  
Sbjct: 298 AAIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKK 357
           +   + +++
Sbjct: 358 VSAWLFRRR 366


>gi|203284703|ref|YP_002222443.1| hypothetical protein BDU_815 [Borrelia duttonii Ly]
 gi|201084146|gb|ACH93737.1| conserved hypothetical integral membrane protein [Borrelia duttonii
           Ly]
          Length = 429

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +E YI+    + F ++ LF +F+ ++ QIL  + ++  +            Y +P V+ +
Sbjct: 8   YESYIITEFCKYFFITFLFFLFVFFINQILFFMRILLQNYVPFFKAFIFVIYSLPMVVAL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF   +     +     N E+L   + G S   L+ P L L +++++  FI  + + P
Sbjct: 68  SPPFAALLSVILTIYRFKLNNEILAFRSIGISISNLLTPFLKLGVIIALVSFILNDFLLP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  ++    +  +    L+     +   DL     + +        F  ++R    
Sbjct: 128 LGSIGRLKIFNDIKEEIPHLILKPYS-SKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGY 186

Query: 184 HKIYYAQSGSIDLDRQAI--ILND 205
            +I+ A+  +I  +   +  ILN+
Sbjct: 187 DRIFMAKELNIQKENHQVYFILNN 210


>gi|146340303|ref|YP_001205351.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146193109|emb|CAL77120.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 365

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 129/368 (35%), Gaps = 29/368 (7%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y       S   +      I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 6   NTLGRYFAGRFLVS---AVGVFASIFLLLVLVDYIEMVRRTSGLASASALMVAETSLFRV 62

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + PFC  +       +++R  EL++    G S    I P L  AI+L +     
Sbjct: 63  PQLLEKMMPFCVLIGAMTCYLALSRRLELVVARAAGVSAWQFIAPALASAIVLGLMATTL 122

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENL-F----FRLDDDLYIKISKYNPNN-TLQ 171
            N +    R   K++ A+   +     +++   F       D  + I  ++       L 
Sbjct: 123 YNPMSANLRELSKRMEAELFGSAPGGGVQDASGFWLNQLNPDGSVIINAARSEQQGVRLT 182

Query: 172 G--IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           G  +F  D+++    +   A+  S++  +         V R S  +  +    F    L 
Sbjct: 183 GLTLFRFDTKNRFKDR-IEAREASLEDGQWVFK----SVRRFSLDAPPVDEPTF---ILP 234

Query: 230 TESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
           T    +      +  + +SF   P+   +          YR ++HK + Q    ++  ++
Sbjct: 235 TTLTPAQVRNSFSTPETVSFWQLPSYIRSSESSGFATAGYRLQYHKLIAQPF--LLAAMV 292

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY---IIHKIEQNPYYIPILYLFLFC 345
            + A+      R       +   +   F ++        +      +P     L +F+  
Sbjct: 293 MLAASVSLRFFRMGGVQKMVLSGVGAGFLLYVLSKVTEDLSKAALMDPIAAAWLPVFVGG 352

Query: 346 ISSIFLLM 353
           ++    L+
Sbjct: 353 LTGFMALL 360


>gi|21230126|ref|NP_636043.1| hypothetical protein XCC0651 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769883|ref|YP_244645.1| hypothetical protein XC_3583 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111656|gb|AAM39967.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575215|gb|AAY50625.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 115/367 (31%), Gaps = 23/367 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQGSYSFGHAIAFVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQG----IFIVDSR 179
            +S    L   A+     +      L+ R  D      +       L      + + D R
Sbjct: 129 AQSQADTLKTSARYQSDMTSARYSGLWAREGD--TFLNALSGEEQLLDNGGTALTLHDVR 186

Query: 180 ------DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
                 + Q  ++ YA        R  +     +V R +  ++ +    F     Q++  
Sbjct: 187 LYHLDANGQMQQLTYAAVAEHREGRWTLR----QVRRDTFQARSVQRETFPELPWQSQLN 242

Query: 234 NSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
             +     A  +NLS   L  +             Y  ++  R   W +P+    + + A
Sbjct: 243 PKALAAGLAKPRNLSVHDLGQSIEYRRRNGLDASDYEDQYWSR---WFYPLNVLALCLAA 299

Query: 293 AD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIF 350
                  +R       +F+ +  + G +    +           Y     L    +  + 
Sbjct: 300 IPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVS 359

Query: 351 LLMIKKK 357
             + +++
Sbjct: 360 AWLFRRR 366


>gi|319956628|ref|YP_004167891.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419032|gb|ADV46142.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
           16511]
          Length = 340

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 138/363 (38%), Gaps = 28/363 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL    +++L+  L  + +  +I ++Q   L S        L+++ GY++P +
Sbjct: 1   MGKTRRYILWSFAKAYLLVFLPFLLVVSLIFVIQLSILSSRVNLEFRELVQLFGYMLPEI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P        N  T  +   E + + + G +   +++ ++   +L +  L +   +
Sbjct: 61  FFYTVPLSLIAALANTFTRFSEENEFIALFSLGHTPGKVLRFMIPTLLLFTALLLVLSVM 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +  +     +     T + +  N   +     ++ +   + N+T + + + +   
Sbjct: 121 LYPQMKQKLNHFKRQKIAEATLN-ISPNKLSQNFGSYHVFVESKDANDTYRNMVLFNQGT 179

Query: 181 TQTHKIYYAQSGSIDLDRQ--AIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
              ++++ A+ G +  D +   + L +G      P  K +  + ++   +     N    
Sbjct: 180 KGAYQLFIAREGRVANDGKRFTLTLRNGTGETSDP--KKVENLHYRELDIYQYPRNVYQS 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV-IFGLISIVAADKRA 297
           ++ + +     L     ++   R +LL          +   L P+  FG+I+ +      
Sbjct: 238 IVTSREYWKKAL-----HDKGRRGKLLYL--------IFVSLTPILAFGIIAALTFYNPR 284

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             R          +L++         Y+   I Q    +P+    +  + ++ + +++++
Sbjct: 285 YQRSLSIAVIFITALAV---------YLPAAILQKSGSVPLFIALVIFLLALGIFLLRRR 335

Query: 358 YTK 360
             +
Sbjct: 336 VLR 338


>gi|124267133|ref|YP_001021137.1| hypothetical protein Mpe_A1944 [Methylibium petroleiphilum PM1]
 gi|124259908|gb|ABM94902.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 373

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/343 (9%), Positives = 106/343 (30%), Gaps = 19/343 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++    +   +  +     +  + + + I  ++ ++ +      ++         +P  
Sbjct: 1   MRTVRRLLYADVLGAVTFVAVSFLSLFFFIDFVEELDDIGRGAYRVHHAALYCLLELPGR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + T   +  + +++E  I+   G      +  +  + +  ++  F+  + 
Sbjct: 61  LYELLPIAVLIGTIYAMARLAQSSEFTILRTGGLGPGRALSLLAKIGLAFAVLTFVVGDY 120

Query: 121 IEPKCRSTIKQLSAKAQLALT-----FSYLE------ENLFFRLDDDLYIKISKYNPNNT 169
           + P   +  + L +  + + +      ++L+             +    I I    P+  
Sbjct: 121 VGPYFDAKAQTLRSTLRGSASGGGNNSAWLKDRRAAAPGELPAGERIDSINIGNVGPDGL 180

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL- 228
           L  + I +  +        A   ++  D  A  L    + R    S D   +  +   L 
Sbjct: 181 LDDVRIYEFSEEGQLLARVAAEHAVVEDG-AWRLKKVRLTRWHAASGDGLPVDERRDELR 239

Query: 229 ---QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
              +   +     V      +   L     ++ +   +  +    +F K+    L  ++ 
Sbjct: 240 WPTRLTPSVVGAAVSPLKSMSTVDLYR-YMSHLSQNEQAAQRQEIQFWKKALYPLACLV- 297

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHK 328
            ++ +         R       +F  + +        +   H 
Sbjct: 298 -MVGLALPFAYLHARAGGVSVKVFGGILLGISFVLLNNVSTHL 339


>gi|187479476|ref|YP_787501.1| permease [Bordetella avium 197N]
 gi|115424063|emb|CAJ50616.1| putative permease [Bordetella avium 197N]
          Length = 389

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 119/370 (32%), Gaps = 23/370 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M++   Y+ R I RS  +  L ++ +     ++  ++ V     S+  LL +    +PT 
Sbjct: 1   MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGEK-FSMLALLYMQALALPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +     L  + +  EL+I+  +G S + L++ +  + I + I   +    
Sbjct: 60  LYDLLPIGLLIGAILALAGLAQRNELVILRVSGVSGMRLMRMLWVVTIPVMIGATLLSEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENL-FFRLDDD---LYIKISKYNPNNTLQGIFIV 176
           + P       +     +       L     F     D     I I     +  ++ + + 
Sbjct: 120 VTPIAEIKSGEADLTFRGKAGGGRLNSGYWFKEPTRDGGTRIINIQTLLADGQVRDVTLY 179

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS--------------KDISIMK 222
           +           +++         ++L+D    R +P +               ++  + 
Sbjct: 180 EL-KPDLELESLSKAAKGVFTDGDLLLSDVVQTRIAPEAAQALANAKQPPKPPAEVETLA 238

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
                           VL     + + L++   +  ++     +       ++       
Sbjct: 239 SLRLDTTLSPERLLARVLTPERMSAATLID-YIDYLHHNQLQADRQVVALWRKFVYPFTL 297

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF 342
           ++  +I+I A       R+      +FI + +    F      ++    + +   +  L 
Sbjct: 298 LV--MITIAAPIAFMQTRRGGVGAKVFIGILMGVAFFMVNQLSLNVGMLSRWPPWLTALG 355

Query: 343 LFCISSIFLL 352
               + I  L
Sbjct: 356 PNAAAMIVAL 365


>gi|319408319|emb|CBI81972.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 363

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 120/361 (33%), Gaps = 25/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      ++     L I  +A +I   +    ++S    +    L IS   +P ++
Sbjct: 5   TLGRYFFVRYIKTTCYFVLSIFILALLIDFTENSGRLASLPHYTAKGALLISALRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P    A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAMTMLISLNKKFELVVARSIGVSAWQFLIPACLGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNN--TLQGIF 174
                S  +++ A+ +     + + +N               I            +   F
Sbjct: 125 AAWGSSQAEKMIAEWRSNNVQTSINKNRIPWLTQHTNLGTTTIGARSITQQGLSLIDATF 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +  + +       +A+  ++  D  A +L +G +++   + +     KF  + ++T    
Sbjct: 185 VQYNDNATVKNWIHAKQATLTND--AWLLTNGTIYKTGYVPE-----KFTEFRIKTNLKP 237

Query: 235 SSTIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                  A+   + F   P       +  Y     + Y       +      V   LI+ 
Sbjct: 238 EFLTEYLADPATIPFYKLPRKISAARSFGYSANKFDMYLQSL---IALPALLVAMTLIA- 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R  +    I   +   F ++   S ++       Y  P++  +   + ++F
Sbjct: 294 -ATVSLKFTRFGQSKALILGGVIAGFMLYVI-SVLVQAFGNAGYIPPVIAAWTPVVIALF 351

Query: 351 L 351
            
Sbjct: 352 F 352


>gi|56708377|ref|YP_170273.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256770|ref|YP_514132.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670847|ref|YP_667404.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315161|ref|YP_763884.1| hypothetical protein FTH_1435 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010911|ref|ZP_02275842.1| hypothetical protein Ftulh_09398 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931970|ref|YP_001891955.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457507|ref|ZP_03665980.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371000|ref|ZP_04987003.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875200|ref|ZP_05247910.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604869|emb|CAG45953.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144601|emb|CAJ79920.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321180|emb|CAL09336.1| Permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130060|gb|ABI83247.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|151569241|gb|EDN34895.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712879|gb|ACD31176.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254841199|gb|EET19635.1| permease yjgP/yjgQ family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159996|gb|ADA79387.1| hypothetical protein NE061598_09765 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 353

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +    N    GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|197105169|ref|YP_002130546.1| hypothetical protein PHZ_c1706 [Phenylobacterium zucineum HLK1]
 gi|196478589|gb|ACG78117.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 367

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 116/368 (31%), Gaps = 25/368 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPT 59
           +   E Y++  +      +   I  +  +IQ ++  + V +      + +  ++    P+
Sbjct: 4   LGRLERYVMGRMLAGVGAALAVISAVILLIQFVELSSQVGTRADVGASGIFALTLLRAPS 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++ PFCF          +NR +EL+ +   G S    I P   LA +L +      N
Sbjct: 64  LIQILLPFCFLFGGIGAFVGLNRKSELVAMRAAGVSAWRFILPSAALAAILGVLAVAVLN 123

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-----TLQG-- 172
                  +  +   A+          ++    + D+   I I   +         L+G  
Sbjct: 124 PFAAALNARFEAERARLMENYLGDRPQDVWIRQGDERTQIVIHAKDRETVAGAVVLKGVS 183

Query: 173 IFIVDSRD---TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
           +FI +       +  +   A    +      +         +     + SI         
Sbjct: 184 VFIYEKTPRGAPEFRRRLEAAEARLMPGFWRL------RDVREAGVGESSIRSESLSIRS 237

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           T  A ++     + +    + L                YR  F + L   +  +   +  
Sbjct: 238 TLDAEAAMERFASPEAIAFWRLPAAIRLTEQAGFSAAGYRLRFQQLLATPV--LFAAMTV 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN------PYYIPILYLFL 343
           + AA    LVR           +++ F +F+   +     + +        + P L   L
Sbjct: 296 LAAAFSLRLVRLGGLAGLAGAGVALGFVMFFFNQFAGALAKADILPLFAAAWAPTLVALL 355

Query: 344 FCISSIFL 351
             ++ +  
Sbjct: 356 AGVTLLCY 363


>gi|88802489|ref|ZP_01118016.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
 gi|88781347|gb|EAR12525.1| hypothetical protein PI23P_07865 [Polaribacter irgensii 23-P]
          Length = 351

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 112/305 (36%), Gaps = 20/305 (6%)

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +      + ++ NTE++ I N   S    + P    A L+++      + + PK
Sbjct: 55  MPLALFIAVILFTSKLSSNTEIIAITNAKVSFTRFLYPYFIGASLVTLLSLAMNHYVVPK 114

Query: 125 CRSTIKQLSAK-AQLALTFSYLE--ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                K    K    +   + L+   N   +L D  YI I  +N  N +   F  ++ D 
Sbjct: 115 SSKIRKGFEKKYINSSKQSNALKYVSNFSLQLTDSTYIFIRSFNTANNMGYDFNSETYDG 174

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT-ESANSSTIVL 240
                  +    +   + +     G   R     +D     F    L T  + ++  +V 
Sbjct: 175 IKLISKLSSDNIMYNPKDSTFTLTGWRKRLIYEKRD---RIFSGNKLDTVFNFSTKDLVY 231

Query: 241 K---ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           K   A +     LL     +     + L  Y  EF+KR +  +   I  +I++       
Sbjct: 232 KSAFAQEMPSGELLKYINISKKRGVKNLNAYLVEFYKRTSLPIASYILTIIAV-----GL 286

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI-PILYLF----LFCISSIFLL 352
             R+++    + +++ +     + F   + ++  +   +  + Y++    +F + +I+L 
Sbjct: 287 SFRKKRGGTGVNLAIGVGIMFLYVFFMKVGEVLGSVAGVDSLAYVWIPNIIFGVVAIYLY 346

Query: 353 MIKKK 357
           +  +K
Sbjct: 347 LNGRK 351


>gi|169656684|ref|YP_001428997.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290954454|ref|ZP_06559075.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312116|ref|ZP_06802927.1| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|164551752|gb|ABU62041.2| putative permease YjgP/YjgQ family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 353

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +    N    GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|254369661|ref|ZP_04985671.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122620|gb|EDO66749.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 353

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +    N    GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTNGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|218885479|ref|YP_002434800.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756433|gb|ACL07332.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 117/364 (32%), Gaps = 16/364 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R      L +      +  +  +  R++    +  SL++         P +
Sbjct: 1   MSLLARYLFRNNLMLILPTLAIGTGLYILSDLFDRLDDFLEAGVSLSVAAWYFVAKTPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F + T + L  M+R  EL+ +   G S   + + ++   ++          +
Sbjct: 61  ISQILPAVFLLATLSQLCLMSRGRELIALQAGGISMGRIARVLVLCGLVWGGLQLGFSQV 120

Query: 121 IEPKCR-STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +         +  S   +     +    N++F     +           T +G+   +  
Sbjct: 121 LGVSGEVEAARIWSEDVRGKTEATATLRNVWFTDGAYVVSLAEVVPAQGTGRGLAAYELS 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL----QTESANS 235
           D     +   ++ +    ++   L+   V    P        +  S TL      ++   
Sbjct: 181 DDGLSILRVVRAATFTAGQRQWELH--GVTEFDPSG--YLSTRHDSLTLPLRQDVQAFLI 236

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +      +   L  L +   +  +     +E  R+ +H +L          L+ + A   
Sbjct: 237 TARNADPSRLPLWQLGD-AIDRLSASGSNVEGVRTAWHMKLA-----YAASLVVMAAVAA 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +  +      I +SL I+F  +  F  +   + Q     P L  +      + + +++
Sbjct: 291 AIVTWRDNIYLGIGLSLIITFLFYTMF-TVGGTLGQKGIVSPPLAAWGSNALILAVALLR 349

Query: 356 KKYT 359
             + 
Sbjct: 350 LAWV 353


>gi|126640322|ref|YP_001083306.1| hypothetical protein A1S_0229 [Acinetobacter baumannii ATCC 17978]
          Length = 266

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 106/272 (38%), Gaps = 10/272 (3%)

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
           + + G S   ++  V+  A+LL +  F     + P      + +  K+  ++      + 
Sbjct: 1   MRSVGISLWRIVGWVMRSALLLIVLSFALSEWVVPYTNEKAQSV--KSHRSVAALGEVKG 58

Query: 149 LFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGE 207
            + R +   +I I   N    L+ I +VD ++D     +  A+ G    D Q  +    +
Sbjct: 59  YWSR-EGQRFIYIDYANSQGNLRDIQVVDFNKDYHLQSLINAEQGKFIQDGQWTLQKASQ 117

Query: 208 VHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET 267
           +   +  +  ++    +S  L  +      + L   D + S L++       Y  ++ +T
Sbjct: 118 MDILTDGNSILNNHDQQSLGLALQPKYVHMVTLDPEDLSPSQLISFMRYMDEYS-QVPKT 176

Query: 268 YRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
           Y+  F +++      +   L++         +RQ+     + I+L I  G ++   ++ +
Sbjct: 177 YQLAFWQKVASPFSLITLVLVACSFIFGP--LRQQSMGFRLVIALFIGLGFYYLQDFLGY 234

Query: 328 KI---EQNPYYIPILYLFLFCISSIFLLMIKK 356
                  +P +  ++ + L   +  +LL   +
Sbjct: 235 ASLVYAPSPAWFVLMPIILMFGAGSYLLYRAR 266


>gi|325919211|ref|ZP_08181260.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325550311|gb|EGD21116.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 368

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 116/367 (31%), Gaps = 23/367 (6%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +         Y +P     +
Sbjct: 9   DWYVGRAVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAFAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTAGMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK-----YNPNNT---LQGIFIV 176
            ++    L   A+     +    +  +  + D ++          +   T   L  + + 
Sbjct: 129 AQNQADTLKTSARYNSDMAMARYSGLWAREGDTFLNALSGEEKLLDGGGTALDLHDVRLY 188

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQA-IILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
             D+        Y A    +  +R     L   +V R +   + +    F     Q++ +
Sbjct: 189 HLDASGRLQQLTYAA----LAENRNGAWTLR--QVRRDTFQERSVQRETFPELPWQSQLS 242

Query: 234 NSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            ++     A  +NLS   L  +             Y  ++  R   W +P+    + + A
Sbjct: 243 PAALAAGLAKPRNLSARDLEQSIEYRRRNGLDARDYEDQYWSR---WFYPLNVLALCLAA 299

Query: 293 AD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIF 350
                  +R       +F+ +  + G +    +           Y     L    +  + 
Sbjct: 300 IPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVS 359

Query: 351 LLMIKKK 357
             + +++
Sbjct: 360 AWLFRRR 366


>gi|90423815|ref|YP_532185.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
 gi|90105829|gb|ABD87866.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisB18]
          Length = 362

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 115/362 (31%), Gaps = 21/362 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST----ESLNILLKISGYLI 57
            +   Y           +      +  ++  +  I+L+  +      S  ++++ S Y +
Sbjct: 4   NTLSRYFAGRFVT---AALAVFAGLFVLLVFVDYIDLLRRAGGRPSISALLIVQTSVYRV 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  + PFC  +       +++R  EL++    G S    + P L+ A+ L +F  + 
Sbjct: 61  PQLLERLMPFCILIGAMTCYLALSRRLELVVARAAGISAWQFMAPALWSALALGVFATVV 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNN-TLQG 172
            N +    +   KQ+ A+     + S  + + F       +    I  ++       L G
Sbjct: 121 FNPMSANMQERAKQMEAEMFGDSSGSLQDASGFWINQVTTEGQAIINAARSQQQGALLTG 180

Query: 173 IFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
           + +     D    +   A+  +++            + R +     +    F        
Sbjct: 181 LSVFRFEPDFSFSERIEAREATLEPGFWRFK----NLRRYTLDGPPVDQDVFL-LPTTLT 235

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            A            +   L     ++ +        YR +FHK L +    ++  ++ + 
Sbjct: 236 LAQVRNSFSTPETVSFWQLPGYIRSSESS-GFATAGYRLQFHKLLARPF--LLAAMVMLA 292

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A+      R       +   +   F ++          +    +         C+ S+  
Sbjct: 293 ASVSLRFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVCVGSLAG 352

Query: 352 LM 353
            +
Sbjct: 353 FL 354


>gi|188993098|ref|YP_001905108.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734858|emb|CAP53069.1| Predicted YjgP/YjgQ family permease [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 113/366 (30%), Gaps = 21/366 (5%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + S    +    Y +P     +
Sbjct: 9   DWYVGRAVLFTVLLTWAVLLGLDVVNAFASEAKSIGQGSYSFGHAIAFVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   + P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVVAMALLTATMVISGETVGPW 128

Query: 125 CRSTIKQLSAKAQ--LALTFS-----YLEEN-LFFRLDDDLYIKISKYNPNNTLQGIFIV 176
            +S    L   A+    +T +     +  E   F          +       TL  + + 
Sbjct: 129 AQSQADTLKTSARYQSDMTSARYSGLWAREGDTFLNALSGEEQLLDNGGTALTLHDVRLY 188

Query: 177 --DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
             D++       Y A        R  +     +V R +   + +    F     Q++   
Sbjct: 189 HLDAKGQMQQLTY-AAVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQLNP 243

Query: 235 SSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +     A  +NLS   L  +             Y  ++  R   W +P+    + + A 
Sbjct: 244 KALAAGLAKPRNLSVHDLGQSIEYRRRNGLDASDYEDQYWSR---WFYPLNVLALCLAAI 300

Query: 294 D-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISSIFL 351
                 +R       +F+ +  + G +    +           Y     L    +  +  
Sbjct: 301 PFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLGVSA 360

Query: 352 LMIKKK 357
            + +++
Sbjct: 361 WLFRRR 366


>gi|119953584|ref|YP_945794.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
 gi|119862355|gb|AAX18123.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
          Length = 429

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P ++ +
Sbjct: 8   YESYIIIEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFVIYSLPMIIAL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF   +     +     N E+L   + G S   L+ P   L +++++  FI+ + + P
Sbjct: 68  SPPFAALLSVILTIYRFKLNNEILAFRSIGISIFNLLVPFFKLGVVIALISFITNDFLLP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  ++  + +  +    L+     +   DL     + +        F  ++R    
Sbjct: 128 LGSIGRLKIFNEIKEEIPHLILKPYS-SKQYGDLIFVSGEKSETGYKNVTFFDNTRLKGY 186

Query: 184 HKIYYAQSGSIDLDRQAI--ILND 205
            +I  A+  +I  +   +  ILND
Sbjct: 187 DRILMARELNIQKENYQVYFILND 210


>gi|289663726|ref|ZP_06485307.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289668603|ref|ZP_06489678.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 368

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 112/369 (30%), Gaps = 27/369 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLSTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLA-------LTFSYLEEN-LFFRLDDDLYIKISKYNPNNT---LQGI 173
            ++    L A A+          +  +  E   F         +    +   T   L  +
Sbjct: 129 AQNQADTLKASARYNSDMASSRYSGLWAREGNTFLNALSG---EEKLLDGGGTALDLHDV 185

Query: 174 FIV--DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            +   D         Y A        R  +     +V R +   + +    F     Q++
Sbjct: 186 RLYHLDPSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQ 240

Query: 232 SANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              ++     A  +NLS   L  +             Y  ++  R   W +PV    + +
Sbjct: 241 LNPAALAAGLAKPRNLSAHDLEQSIEYRRRNGLDARDYEDQYWSR---WFYPVNVLALCM 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISS 348
            A       +R       +F+ +  + G +    +           Y     L    +  
Sbjct: 298 AAIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKK 357
           +   + +++
Sbjct: 358 VSAWLFRRR 366


>gi|307946742|ref|ZP_07662077.1| permease [Roseibium sp. TrichSKD4]
 gi|307770406|gb|EFO29632.1| permease [Roseibium sp. TrichSKD4]
          Length = 364

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 119/362 (32%), Gaps = 25/362 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  +Y      +S L   L    + ++  +L+ +         ++  +  IS   +P +
Sbjct: 5   RTLAIYFSARFFKSILGLFLLAAVLIFLFDVLELVRRGGDQEGFTVVRVALISILRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF     +     +++R  EL++   +G S      P + + +++     ++ N 
Sbjct: 65  LEQVIPFAVLFGSILAFVTLSRALELVVARASGISVWQFAAPAVVVGLIIGTLSVVAYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    + +A    +     L+         D++++    +  + L    ++D   
Sbjct: 125 LAVWLQHRSDEAAAGLFGSEQSFLLQ------TTQDVWVRQDGLDGESVLLAKQLLDGGT 178

Query: 181 TQTHKIYYA-----------QSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
                  +A           ++ +  L  Q   L D  V+      +     +  +Y   
Sbjct: 179 RLLDVTIFAFDKEGSFKERVEAATARLGDQIWFLEDVTVYTTERDPQQYGRYEVSTYLTA 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
           TE   S       +  +L   +    N           Y  ++   L + L  ++  +I 
Sbjct: 239 TEVRESIGSPESISFWSLPRFIELARN----AGLPAYRYTLQYQTLLARPL--LLTAMII 292

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           I AA    + R       I   +   F ++   S +           PI+  +   I  +
Sbjct: 293 IAAAVSLRVSRFGGLGSMILGGIVAGFVLYV-LSELAKDFGGAGIVPPIVAAWAPGIFGV 351

Query: 350 FL 351
            +
Sbjct: 352 LM 353


>gi|153822424|ref|ZP_01975091.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|126520067|gb|EAZ77290.1| conserved hypothetical protein [Vibrio cholerae B33]
          Length = 164

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 65/158 (41%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  + YI R I  +  +  +  V ++ +I+ ++++  V   +  L   L      IP  +
Sbjct: 3   KILDWYIGRTIVATTALVLVTFVGLSGIIKYVEQLRKVGEGSYDLLQALLFVVLSIPRDV 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M  P    +     L ++  ++EL+++   G S++ +   VL  AI L I + +     
Sbjct: 63  EMFFPMAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWG 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            P+ +   + + A A        +   ++ R  +D   
Sbjct: 123 APQAQKMARDMRAFATSGGAIMSVRTGVWARDANDFIF 160


>gi|187918661|ref|YP_001884227.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
 gi|119861509|gb|AAX17304.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
          Length = 429

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 83/204 (40%), Gaps = 3/204 (1%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
           +E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+ +
Sbjct: 8   YESYIITEFCKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFVIYSLPMVIAL 67

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             PF   +     +     N E+L   + G S   L+ P   L +++++  FI  + + P
Sbjct: 68  SPPFAALLSVILTIYRFKLNNEILAFRSIGISIFDLLVPFFKLGVVIALIAFILNDFLLP 127

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
                  ++  + +  +    L+     +   DL     + +        F  ++R    
Sbjct: 128 LGSIGRLKIFNEIKEEIPHLILKPYS-SKQYGDLIFVSGEKSDTGYRNVTFFDNTRLKGY 186

Query: 184 HKIYYAQSGSIDLDRQAI--ILND 205
            +I+ A+  +I  +   +  ILND
Sbjct: 187 DRIFMARELNIQKENYQVYFILND 210


>gi|83945295|ref|ZP_00957644.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851465|gb|EAP89321.1| hypothetical protein OA2633_00970 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 367

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 87/310 (28%), Gaps = 23/310 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPT 59
           +     Y+        + + + I  +  +I  ++    + +    S    L +S    P 
Sbjct: 2   IGRLWRYLFIQTLIGLIGAAVIITAVILLIDFVETSRDIGTRVGISAFQALHLSLLKAPL 61

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++    PF            +NR +EL+++  +G S   ++ PV  LA L      ++ N
Sbjct: 62  LVQDTLPFIVLFGVLFTFFRLNRRSELIVMRASGYSAWRILAPVAILAALTGAISTLALN 121

Query: 120 IIEPKCRSTIKQLSAKAQ----LALTFSYLEENLFFRLDDDLYIKISKYNPNN------- 168
            +     +  +            +   +              YI I+             
Sbjct: 122 PLGAASNARFEATREALFEGEGQSSGANQSGPIWLRETTATGYIMITAQQQGGDDATLTE 181

Query: 169 -TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
              +   + +S      +   A+   ++    ++          +P  +   +    +  
Sbjct: 182 PVFRQYVLSESGAPLLDRRITAERAELNGGFWSLT----NAIEYAPGGQATELGD-VALP 236

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF--HKRLTQWLFPVIF 285
                             +   L        + R   L +   E   H  L Q L  V  
Sbjct: 237 TNVGRQALFERARSPGAVSFWQL---PAVIASARDAGLSSLAYELRWHGLLAQPLMLVAA 293

Query: 286 GLISIVAADK 295
            L+ I A  +
Sbjct: 294 ALMGIAATLR 303


>gi|297172254|gb|ADI23232.1| predicted permeases [uncultured nuHF2 cluster bacterium
           HF0770_13K08]
          Length = 351

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 125/360 (34%), Gaps = 18/360 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    YI     R F++     V ++ V      +  V +  +S    L+ +  L+P +L
Sbjct: 4   KIISKYIASEFNRYFMLFLGAFVLMSLVGNFFGNLADVFTDWQSFLKFLQETALLLPLLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    + T    +S+N+N ELL I ++G     L  PVL ++ L++ F + S+N +
Sbjct: 64  ELIIPITVLLATIATYSSLNKNAELLAIRSSGIGGWRLAFPVLAVSALIASFAYFSQNYM 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                 T  +    A+L          L+   ++           N  +  I   + +  
Sbjct: 124 YTWMHQTWVKQENSARL--------PPLWKVGEEQSIYYFGNRQHNGRISSITSFNWKQI 175

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLK 241
               +        +    + I +D + +     +  +  ++      +        I + 
Sbjct: 176 PFQLLGRTAIERGEQQNNSWIFHDIQKYIFQDENLRLEHVEQWRIETEKLPTVPFDIPIS 235

Query: 242 ANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
            + Q L  L   N        + +  Y     ++        I  LI +      +  R+
Sbjct: 236 PHHQPLLDLYE-NTLKLQSEGQDVTRYWVAIFQKTAYPFQIFIMVLIGL--GLSASYNRR 292

Query: 302 RKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLMIKK 356
              +    +++S   G+ FW  + I   +       P    +    +F   +++LL   +
Sbjct: 293 G--MAAESLAISCLLGILFWILNQITMAVGGAGLIFPFFAAWSGNIIFLALALWLLSYNR 350


>gi|326388615|ref|ZP_08210208.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206866|gb|EGD57690.1| permease YjgP/YjgQ [Novosphingobium nitrogenifigens DSM 19370]
          Length = 356

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 111/329 (33%), Gaps = 23/329 (6%)

Query: 38  LVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
           ++++       LL+      P ++    P+   + T   L ++N+N+E++ +   G S  
Sbjct: 36  ILAAKGNGQMELLRYGMLRTPQLVSRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAH 95

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF-SYLEENLFFRLDDD 156
            ++ P+  ++   S+F F     +  +  +T+K        A+   S ++ N++ +   +
Sbjct: 96  QVLAPLFLVSAAASVFTFTFNERVVVRSTATLKAWQDVDYGAVPTDSDVKSNVWLQDGPN 155

Query: 157 LYI--KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
           +     IS       +  +     RD          +            +        P 
Sbjct: 156 IVFAKTISGRGTATRMSEVSWY-RRDPTGVVTEIVHAPLATYTHPGWRFD-------HPT 207

Query: 215 SKDISIMKFKS------YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETY 268
           S D+      +      Y    E          A+ ++++ L + +              
Sbjct: 208 SFDVQSAALTTLPGPKVYASGVEPTQIIIRKTDADRESITQL-SQSIAEIQAAGYRTNEL 266

Query: 269 RSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYI 325
             ++  +++  L  V+  L+  VAA    L R  K      I +++ F  F        +
Sbjct: 267 DGKWWHKISGPLSAVLMPLLGSVAAFG--LARSGKLFVRAVIGMALGFAYFVVDNAALAM 324

Query: 326 IHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            +    +P+        LF +    +L+ 
Sbjct: 325 GNFGGYSPFLAAWSPFLLFLLIGETVLIR 353


>gi|209964865|ref|YP_002297780.1| predicted permease YjgP [Rhodospirillum centenum SW]
 gi|209958331|gb|ACI98967.1| predicted permease YjgP [Rhodospirillum centenum SW]
          Length = 364

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 124/356 (34%), Gaps = 18/356 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +  LYI R     FL     ++ I +++  ++ +   ++    +  I+L +    +P + 
Sbjct: 6   TLSLYIGRQFVLWFLAILGGMLAIVYLLDTVELLRRAANKPDAAFQIVLTMGLLKLPEIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF            + R  EL+++  +G S    + PVL    L+ + L    N I
Sbjct: 66  QEIVPFVVLFGGMYTFWRLTRTQELVVVRASGISVWQFMAPVLTATFLIGMTLVGVLNPI 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSY--LEENLFFR---LDDDLYIKISKYNPNN-TLQGIFI 175
                   +QL  +    +  S    E  ++ R         I      P    L+ + +
Sbjct: 126 FSAMLGRYEQLENRYLRGMKSSLDVAESGIWLRQVGEPQAYLIHADAIVPGTLELRQVMV 185

Query: 176 -VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
            ++  D Q    + A S ++        L D   +R   + + +      +Y L TE   
Sbjct: 186 LLNESDGQVSGRFDAASATLRDG--FWELRDAWFNRPGRVGEFL-----PAYRLPTELTE 238

Query: 235 SSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                  A+   LSF   P               +R  +H  L Q +  ++  +I + AA
Sbjct: 239 QKIQEAFASPDTLSFWELPGFIATLEATGLSSVRHRLHWHSLLAQPV--LLCAMILLAAA 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                VR+   +  I + ++ +  +F     ++         + +       +S +
Sbjct: 297 FAMRQVRRGGALTLIALGIAAALLLFVMQDIVLALGMSGTIPVLLAAWAPAGVSVM 352


>gi|82701537|ref|YP_411103.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
 gi|82409602|gb|ABB73711.1| permease YjgP/YjgQ [Nitrosospira multiformis ATCC 25196]
          Length = 354

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/356 (11%), Positives = 116/356 (32%), Gaps = 4/356 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+   +     ++   ++ +   + +L +++ V   T S+      +  L+P  
Sbjct: 1   MTIIYRYLGLQVLMGLGIATAVLLPLFGFLDLLDQLDDVGKGTYSVKDAFLYTALLLPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   M     L  +   +EL  +   G S + +    + + I+L +F+ + +  
Sbjct: 61  FIQLAPFIALMGNVTALGRLAVGSELTALRGAGVSPLGISLAPVVVGIILLLFITVLDQF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P+ +       A A         +  ++ R + ++ ++I +         I I+   D
Sbjct: 121 VAPQFQQKAISSRAAALEKSAALGQQLGIWTRDERNI-LRIGEMLHARRAANIEIMHFDD 179

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                 Y     +  ++     L D  +   +  + +I   +   +    +  + ST+  
Sbjct: 180 NGFLLRYTYAKYADIINEGLWELRDVVIKTFNGNAMEIVSRESVPWEPFLKEEDISTLTK 239

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
                + + L     +      +    Y     ++    L  +   L+SI          
Sbjct: 240 SPESLSPAELFLH-VHFLRATGQESGAYELALWRKAGGALTTIAMLLLSIPFVFGSVRAG 298

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              ++    +     +      +     +  NP    +L      + ++    +++
Sbjct: 299 LGNRLVVASMLGISVYLFDQITANAGLLLHLNPALSALLPGG--VLIAVAYFWLRR 352


>gi|159043738|ref|YP_001532532.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
 gi|157911498|gb|ABV92931.1| permease YjgP/YjgQ family protein [Dinoroseobacter shibae DFL 12]
          Length = 365

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 118/364 (32%), Gaps = 15/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R    SFL        + W+   ++ +  +SS    L     ++   +P  + 
Sbjct: 2   TLQWYFARRFVMSFLSMLGIFAGLIWMTDTVESLRSLSSDDFGLQEAAALALLQLPATIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT-LIKPVLFLAILLSIFLFISENII 121
            V P    + T  +   M R +EL++    G S I  LI PV+   ++  I + +   I+
Sbjct: 62  EVIPLIMVLATITLFLKMARTSELIVTRAAGRSAIRSLIAPVIVAGLIGGIGISVLNPIV 121

Query: 122 EPKCRSTIKQL-SAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
               R   +     + +     +   E L+ R    +  + I  +  +   T L  + F+
Sbjct: 122 AATSRIAEETRDEVRGRATSVLALSSEGLWLRQAAPEGQIVIHAAGASLGGTILYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE--VHRKSPISKDISIMKFKSYTLQTESA 233
               D    +   A    +      +          R +P +  +    +          
Sbjct: 182 RFDADALPIERVAASRAELVPGAWDLTGVKVWDLTGRLNPEAG-VRTSAWMQVPSDLTLD 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                    +   +  L     +          ++R   H  L   +F V   LI   AA
Sbjct: 241 QIRDSFGDPSAIPIWELPA-FIDQLEAAGFAALSHRVWLHTELASPVFLVAMVLIG--AA 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWG--FSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                 R  +    +  ++ + F +++   F+ ++ +  + P      +  L  +     
Sbjct: 298 FTMRHTRFGRTGLMVLFAVLLGFSMYFLKSFAQVLGEAGKIPVLAAAWFPPLAGVFLSLA 357

Query: 352 LMIK 355
           L++ 
Sbjct: 358 LLLH 361


>gi|284799560|ref|ZP_06390217.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797388|gb|EFC52735.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 181

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGDLGKGSYNGAKLGQYVLMQMPAR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLISLSQLASGSELTVIKASGMSTKKLLLILSQFGLIFAIATVALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENL 149
           + P      + + A     K     T  +L+E  
Sbjct: 121 VAPTLSQKAENIKAAAINGKISTGNTGLWLKEKT 154


>gi|291060242|gb|ADD72977.1| putative permease, YjgP/YjgQ family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 372

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 125/358 (34%), Gaps = 13/358 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  ++Y+L      F +  +    I   I IL  +    S+    + L+KI    IP  
Sbjct: 1   MKILQVYMLDMFLPIFFLVLVCASMILDAIDILVNLTQFISNGYRFSSLVKIWYVSIPHY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P       T  +  +    E L I   G S  +++ P       L+I +F  +N 
Sbjct: 61  VLLCCPLSVLFAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNS 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQG-IFIVD 177
           +    +S   ++ A+  ++      E ++     D   I I+         L   + I+ 
Sbjct: 121 VVVVSQSKKDEIIAR-TVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMK 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           + +    K+  A +     DR   +L    V+  +   K +      S+ L+        
Sbjct: 180 NSNGTIQKLIEAHTAHWQKDR--WVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDH 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
                   ++   +    +   Y  +        F+K+     FP+   ++  ++    +
Sbjct: 238 QDFLTKGMSIQK-IKETLHTLKYASKPHRELSIRFYKKF---YFPLTMCIMLCLSFLTGS 293

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLL 352
            +++R  I  IF S+ ++   +      I    +   +P++     +  F     ++ 
Sbjct: 294 FLKKRSLIMYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYVW 351


>gi|146277167|ref|YP_001167326.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555408|gb|ABP70021.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 364

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 107/370 (28%), Gaps = 28/370 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  + 
Sbjct: 2   ILSRYIARRFLRMVFIVFLVFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R +EL+++   G S +  +   + +A+ +        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARTSELVVVRAAGRSGLRFLVAPMIVALAIGAAAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNNT-LQGIFIV 176
                     +++         S  EE L+ R    +    I  ++ N + T L  +  +
Sbjct: 122 AGTSRQYDAAASRLARGEASILSISEEGLWLRQGGAEGQTVIHAARSNTDGTRLYAVTFL 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT--------- 227
                   +   A             L  G        S D+++   ++           
Sbjct: 182 TFDGNGLPRSRVAAE--------QAALETGYWQLSGAKSWDLTLANPEASANLEGNIRVP 233

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                          +   +  L                 +R      L      ++  +
Sbjct: 234 SDLTREGIQDSFGDPSAIPIWELPA-YVAGLERAGFSARKHRVWMQMELALPF--MLAAM 290

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE--QNPYYIPILYLFLFC 345
           + + A       R       + ++L   FG+F+  ++     E  Q P  +      L  
Sbjct: 291 VLVAAGFTMRHSRFGGTGRMVLLALLSGFGLFFLRNFAQVLGENGQIPILLAAWSPPLIG 350

Query: 346 ISSIFLLMIK 355
           +     L++ 
Sbjct: 351 VMGSLGLLLH 360


>gi|78049235|ref|YP_365410.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925500|ref|ZP_08186891.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037665|emb|CAJ25410.1| putative YjgP/YjgQ family permease [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544092|gb|EGD15484.1| putative permease [Xanthomonas perforans 91-118]
          Length = 368

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 111/369 (30%), Gaps = 27/369 (7%)

Query: 5   ELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMV 64
           + Y+ R +  + L++   ++ +  V         +   + +    +    Y +P     +
Sbjct: 9   DWYVGRVVLFTVLLTWAVLLGLDLVNAFASEAKNIGQGSYTFGHAVAYVAYTVPRRAYTL 68

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P    +     L  +   +EL  +   G SR  +   V+    LL+  + IS   I P 
Sbjct: 69  FPTAAVIGALMGLGQLAATSELTALRALGVSRKRMSASVVAAMALLTASMVISGETIGPW 128

Query: 125 CRSTIKQLSAKAQLA-------LTFSYLEEN-LFFRLDDDLYIKISKYNPNNT---LQGI 173
            ++    L A A+             +  E   F         +    +   T   L  +
Sbjct: 129 AQNQADTLKASARFNSDMASSRYAGLWAREGDTFLNALSG---EEKLLDGGGTALDLHDV 185

Query: 174 FIV--DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
            +   D         Y A        R  +     +V R +   + +    F     Q++
Sbjct: 186 RLYHLDPSGRMQQLTY-ASVAEHRDGRWTLR----QVRRDTFQERSVQRETFPELPWQSQ 240

Query: 232 SANSSTIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              ++     A  +NLS   L  +             Y  ++  R   W +P+    + +
Sbjct: 241 LNPAALAAGLAKPRNLSAHDLEQSIEYRRRNGLDARDYEDQYWSR---WFYPLNVLALCM 297

Query: 291 VAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ-NPYYIPILYLFLFCISS 348
            A       +R       +F+ +  + G +    +           Y     L    +  
Sbjct: 298 AAIPFSFGSLRSGGLGKRLFLGILFALGFWLLQLFFGRMAGALKLDYRIAYALPPMVMLG 357

Query: 349 IFLLMIKKK 357
           +   + +++
Sbjct: 358 VSAWLFRRR 366


>gi|32266101|ref|NP_860133.1| hypothetical protein HH0602 [Helicobacter hepaticus ATCC 51449]
 gi|32262150|gb|AAP77199.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 339

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 128/354 (36%), Gaps = 31/354 (8%)

Query: 4   FELYIL---RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           F+ Y+      I   F +  LFI  +  +I I  R  ++     S   L  +  YLIP  
Sbjct: 2   FKRYLFMSFAQIFFPFFLVLLFIASVVLLIDIAGRTYVI---KMSFIDLGTLFLYLIPGS 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P  F       +  +  + EL++  + G   + ++K  L + +L +I LF+   +
Sbjct: 59  LFFIIPITFFAALVLSVAKLTYDYELMVCFSLGAKPLDIVKFFLPITLLATIILFVFSLV 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P   S  K   A+ +  +  + ++   F +   D  + +         + + +     
Sbjct: 119 MLPLANSASKNFVAQKKADIDVN-IKSGEFGQKLGDWLVYVDS-AHKRIYKNLILFSENG 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            +      A+SG  + ++    LN   +   S        +K   Y   +   N S   L
Sbjct: 177 FEGDTFIVAESGKTNNNQGLFELN---LQEGSAYFASPEELKRVDYHQMSVRQNVSEPQL 233

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK---RLTQWLFPVIFGLISIVAADKRA 297
           ++ D                       + S+ H+   +L Q +   +F L S+       
Sbjct: 234 RSYDLF---------------EYWGNVFTSDSHQKPRKLAQAVMVSLFPLTSLFLVPLFG 278

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +   R   +  +  +  S  +++  ++I    E  P    I+  FL+C  S  L
Sbjct: 279 IANPRFHSNMSYFYVIASVALYFVLTHIAS--EHFPLIGMIIIPFLWCALSFGL 330


>gi|118497254|ref|YP_898304.1| membrane protein of unknown function [Francisella tularensis subsp.
           novicida U112]
 gi|118423160|gb|ABK89550.1| conserved membrane protein of unknown function [Francisella
           novicida U112]
          Length = 353

 Score = 79.2 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 86/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +         GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|257457656|ref|ZP_05622823.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445042|gb|EEV20118.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 300

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 13/292 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + Y+L+     F+++ LF + +  +  +   +     +      LL++    +P  
Sbjct: 1   MKILQRYLLQLFFPVFVITILFFILLLQLGDLFLNLAQYLQNQVRFVTLLRVMYLYLPKC 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      ++  + +M    EL  I  +G     L+ P++     LSI +F  E+ 
Sbjct: 61  ISFAMPLSVLFASSYTMGNMYAKNELTSIFASGMPLTVLVAPLVLCGFALSIGMFYFEDR 120

Query: 121 IEPKCRSTIKQLSAKA---QLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIV 176
           I    +     L  +    Q  L  S L   +       +      Y+ N   L  + IV
Sbjct: 121 ILIHFQRQKIALVNELLEPQQNLNSSDL---VILSESGKIVYFADYYDDNRKELSNVLIV 177

Query: 177 DSRD-TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              +      +    S     D  AI   D  ++  +  +                S   
Sbjct: 178 MRTESGDVSTVIKGSSAQWQTDHWAI--TDKSIYTFTAENDVHYQDAIDEGLFSEPSETF 235

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFHKRLTQWLFPVI 284
              +   ++ +++       N   +    +  +    + FH RL + L    
Sbjct: 236 QRNITSIDEMSIAQAKVFIDNLKKWACPTMNIFLNITAVFHFRLRRSLCCFS 287


>gi|46580073|ref|YP_010881.1| permease [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602469|ref|YP_966869.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|46449489|gb|AAS96140.1| permease, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562698|gb|ABM28442.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris DP4]
 gi|311233928|gb|ADP86782.1| permease YjgP/YjgQ family protein [Desulfovibrio vulgaris RCH1]
          Length = 360

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 110/367 (29%), Gaps = 14/367 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+ R   +  L +      +  +  +  R++ +  +    N+ +       P +
Sbjct: 1   MTLLFRYLFRNNLQVILPTLAVGTGLYLLSDLFDRLDDILEAGVPGNVAIWYFVAKTPLI 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  M+R+ EL+ +   G S   + +  +   +L ++       +
Sbjct: 61  ISQILPAVFLLAALIQLCLMSRDRELMALQAGGVSFGAIARFFVVYGLLWAVLQLGFSQV 120

Query: 121 IEPKCRST-IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           +         +    + +     +    N++F  DD+  I +    P       F     
Sbjct: 121 LGVAGERESARIWQEQVRGRTPGTRDLTNVWFT-DDNHVIHLEVVTPALRKGQGFAAYGL 179

Query: 180 DTQ---THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
                    +  A+  +         L D EV      ++D    K    ++        
Sbjct: 180 AADGIHIDTVIRAK--AFTGTAGTWKLQDVEVF----STRDFGHAKLPEMSIAIGQDPQD 233

Query: 237 TIVLKANDQNLSFLLNP---NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             V+          L                +E  R+ +H +L      V+ GL+++   
Sbjct: 234 FAVIDPGADPQRLPLWQLGDAVEKLRTAGSNVEGLRTAWHMKLAYAASLVVMGLLAVAMV 293

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
             R  +     +  +F  L  +             +           L     S+  LL+
Sbjct: 294 TWRDNIYLATGLALVFTFLFYTMFTIGSTLGQKGIVSPPIAAWGADILVGVVASARLLLV 353

Query: 354 IKKKYTK 360
           ++ +  +
Sbjct: 354 LRPRSLR 360


>gi|254510403|ref|ZP_05122470.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
 gi|221534114|gb|EEE37102.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium KLH11]
          Length = 382

 Score = 79.2 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 118/338 (34%), Gaps = 12/338 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SFL+     + +  +I +++++    S   S   LL+++    P  + 
Sbjct: 18  ILDRYFARRFVQSFLVIGGIFLTLMILIDLIEQVRRFDSVDLSFGQLLQLTLLNTPAAIS 77

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   +F+A+++  F     N I 
Sbjct: 78  EMLPLLMILATIALFVGLARSSELVVTRAIGRSGIRALLAPVFIALMIGGFAVALLNPIA 137

Query: 123 PKCRSTIKQLS--AKAQLALTFSYLEENLFFR---LDDDLYIKISK--YNPNNTLQGIFI 175
                  ++L+   + Q +   S   E L+ R         I  +      +  L  + I
Sbjct: 138 AATSEEFQRLADGYRNQGSSALSISGEGLWLRQASASGQSVIHATGTVNGDDFALHDVTI 197

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESAN 234
                        A     DL+     L   +V       + + +    +   L T    
Sbjct: 198 TTFSSDGKPNQQIAAR-QADLENGYWTLRQAKVWTLEDDLNPETNATTHEVLNLPTTLTR 256

Query: 235 SSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              +       ++S + L    ++        + Y      +L + LF V   LI   AA
Sbjct: 257 DRILDTLGQQDSVSVYDLPQLISDLREAGFATKQYEVWLQVQLARPLFLVSMVLIG--AA 314

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                VR       +  ++ + FG+++  ++     E 
Sbjct: 315 FTMRHVRFGGTGIAVLTAVLLGFGIYFIRNFAQILGEN 352


>gi|254372627|ref|ZP_04988116.1| permease YjgP/YjgQ family protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570354|gb|EDN36008.1| permease YjgP/YjgQ family protein [Francisella novicida GA99-3549]
          Length = 353

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 88/205 (42%), Gaps = 11/205 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I P        +  +       +Y   +L+F+  D     IS   P      GI     +
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFM-NISNIEPTQGKAYGIRKFMVQ 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILN 204
           D +  +I YA+S +   D  A + N
Sbjct: 173 DNKVREIRYAESATYINDASANVFN 197


>gi|51599059|ref|YP_073247.1| hypothetical protein BG0833 [Borrelia garinii PBi]
 gi|51573630|gb|AAU07655.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBi]
          Length = 429

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIISEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     N E+L   + G S   LI P   L I++    FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGIVIVFISFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       ++  + +  +    L+     +   DL     + + N      F  ++R  
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENGYKNVTFFDNTRLK 184

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILND 205
              +I+ A++  I  +   +  ILND
Sbjct: 185 GFDRIFMAKNLDIKKENFQVYFILND 210


>gi|298291095|ref|YP_003693034.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
 gi|296927606|gb|ADH88415.1| permease YjgP/YjgQ family protein [Starkeya novella DSM 506]
          Length = 361

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 122/369 (33%), Gaps = 34/369 (9%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           ++  +Y  R    + L   +    +  +I +L+    V         L+ +  Y +P   
Sbjct: 4   RTLGVYFGRRFLGAVLGIFVGCAGLIMLIDLLELSRRVGERDVDFGTLMLLVVYRMPFFT 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF           +++R  EL++    G S    I P   LA+LL +F     N +
Sbjct: 64  EQLLPFAVLFGAIGTFLTLSRRLELVVARAAGISAWQFIAPACLLALLLGVFSTTVYNPV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---------- 171
               +    +L A+          +  LF       +++    +    +Q          
Sbjct: 124 SADFKDRASRLEAEIFNR------QTGLFAMTTGGFWMRQQSVDGQAIIQAAATSDGGRQ 177

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                +F+  + D  T +   A    ++     +            ++  I + ++ +Y 
Sbjct: 178 LTGVNVFLFGADDKLTER-IEAVRAILEPGAWRL-------EHARVLTPGIGLQEYDAYM 229

Query: 228 LQTE-SANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIF 285
           L T  + N     L+++      L  P   +   R     E YR ++   L + +  +  
Sbjct: 230 LATNLTPNQVQETLQSDTVPFWQL--PAAIDAATRVGFGAERYRLQYQSLLARPMLLLAM 287

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            LI+  A+    + R       I   ++  F ++          E    +  I   F   
Sbjct: 288 VLIA--ASVSLRVFRFGGIGQTILGGVAAGFLLYVSTKLAEDLGEAGIVHPVIAAWFPAV 345

Query: 346 ISSIFLLMI 354
           + ++  ++I
Sbjct: 346 VGALMGILI 354


>gi|71064627|ref|YP_263354.1| hypothetical protein Psyc_0046 [Psychrobacter arcticus 273-4]
 gi|71037612|gb|AAZ17920.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 402

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 1/144 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+      + + + + +  +  V   L  ++ +   + ++   +K   Y  P  
Sbjct: 21  LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSL-DDSYTMGEAIKYIFYRSPYF 79

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  N+EL+++   G S   ++  VL  A++  +   I    
Sbjct: 80  LEQFIPTGALLGAVIGLGLLANNSELVVMRAAGISVYRIVSWVLQPALIFVVLALIINQF 139

Query: 121 IEPKCRSTIKQLSAKAQLALTFSY 144
           + P       ++++K   +L  S 
Sbjct: 140 VLPHSNQLANEINSKGNSSLVTSV 163


>gi|219684946|ref|ZP_03539887.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBr]
 gi|219671684|gb|EED28740.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBr]
          Length = 429

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIITEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFLKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     N E+L   + G S   LI P   L +++    FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPFFKLGVVIVFISFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       ++  + +  +    L+     +   DL     + + N      F  ++R  
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENGYKNVTFFDNTRLK 184

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILND 205
              +I+ A++  I  +   +  ILND
Sbjct: 185 GFDRIFMAKNLDIRKENFQVYFILND 210


>gi|86138692|ref|ZP_01057265.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
 gi|85824752|gb|EAQ44954.1| permease, YjgP/YjgQ family protein [Roseobacter sp. MED193]
          Length = 367

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 126/358 (35%), Gaps = 15/358 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  R   + F + C  ++ +  +I + ++I        S + ++ ++    P  L 
Sbjct: 2   KLDLYYARRFLQWFAVICGVLMTLVMLIDLNEQIRRFDEFDVSASEIVGLTLLNAPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   + +A LL I    + N I 
Sbjct: 62  EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAGLLGILAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNN---TLQGIF 174
               +  K L+   +       S+  E L+ R         I  S Y   +    L  + 
Sbjct: 122 AATTNLSKTLADTYRTGGPSALSFSGEGLWLRQGSPSGQSVIHASSYGGGSDNIVLYDVT 181

Query: 175 I-VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE-VHRKSPISKDISIMKFKSYTLQTES 232
           I   +      +   A+S  +  D +  +L+  +  H  + ++ + S    ++  L T  
Sbjct: 182 ILAYAPQGGPIRQIIAESARL--DGEEWLLHKAKAWHMTAGLNPERSAATHETLRLPTTL 239

Query: 233 ANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     +   +S + L     +        + Y+  +   L + LF +   L+   
Sbjct: 240 TQDRIRDRLGSADGISVYDLPTTIRDLAQAGFSTKRYQVWYQVELARPLFLIAMVLVG-- 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           AA      R       +  ++ + FG+++  ++     E     + +        S +
Sbjct: 298 AAFTMRHTRFGGTGLAVLTAVLLGFGLYFVRNFAQILGENGQIPVALAAWAPPVASIL 355


>gi|46446270|ref|YP_007635.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399911|emb|CAF23360.1| hypothetical protein pc0636 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 360

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 131/368 (35%), Gaps = 20/368 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI--LLKISGYLIPT 59
             +E Y +    + FL+  +    +  +I      + +      L I  L++   +++ +
Sbjct: 4   SIWERYFVSEFIKVFLLFLVCFYGLYVLIDYASHTSALPHHHIQLRIRELIRYYLFILAS 63

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              ++ P    +     + ++N + EL+ +   G    TL++P L +A+     L+++E 
Sbjct: 64  RAEILIPLALLIAFIKTVCTLNTHQELVALMAGGIKLKTLMRPFLMIALAFVCLLYLNEQ 123

Query: 120 IIEPKCRSTIKQLS--AKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
            + P     ++ L    K Q       +        D  L +  +  +       ++ ++
Sbjct: 124 FVLPSTLKKLRHLENATKHQKKRQLPEITVKHVVLEDRSLLLYQNYDSEKEEFFDVYWIE 183

Query: 178 SRDTQTHKIYYAQSGSIDLD---RQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           S D+     Y   +  I +       +   +GE+ ++       S  +FK+     E   
Sbjct: 184 SIDSIYRAKYLCPNKEIPVGYFVDHLLRQPNGELLQQQA----YSQYEFKNLLFNQELLQ 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           S+  +L  +   L+ L    P+      E      + F+ +L      ++      + A 
Sbjct: 240 SA--ILDPDILPLTNLFFQQPSLFANLSEKESKIATAFYWKLLMPWLCLLA-----ILAP 292

Query: 295 KRALVRQRKKIHPIFISLSISFGV--FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
             + VR  ++I   FI +   FG+  F+        + +     PI  + L  I      
Sbjct: 293 APSCVRFSRQIPIFFIYIYSLFGLIAFYMLMDAAQVLAKRQVLPPIWAIGLPFILVFSFY 352

Query: 353 MIKKKYTK 360
             +    K
Sbjct: 353 SYRFARLK 360


>gi|170746989|ref|YP_001753249.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653511|gb|ACB22566.1| permease YjgP/YjgQ family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 363

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 109/352 (30%), Gaps = 18/352 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      R+ L   + +  + + +  ++ +         S  ++ ++S Y  P V 
Sbjct: 7   TLGRYFAARFLRTVLGVFVTVFALVYTLDFVELLRRAGEAQGASAGLMAQLSLYRTPAVA 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P LF+A+ L        N +
Sbjct: 67  EGVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGLFVALALGALAVGVYNPV 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                + +KQ S + +  +     +         DL+I+    +    L+    V+   T
Sbjct: 127 S----AMLKQRSTEIEAKIFAKSTKA----SSGKDLWIRQKGLDGEAILRAETAVEGTTT 178

Query: 182 QTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPI--SKDISIMKFKSYTLQTESANS 235
                 +    +     Q +    +L+DG          + D     F +Y + +     
Sbjct: 179 LAGVSVFTFDAAGKFAEQLVAARAMLHDGYWELSDVRVLTPDAPPESFDTYLIASNLDPG 238

Query: 236 STI-VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    +    + L                YR ++     + +  +   ++ + A  
Sbjct: 239 QVRQRFTPPESVPFWQLPTTIARTERAGLDATRYRLQYDVLWARPV--LFVAMVIVAATV 296

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
                R       +   ++  F ++     +           P+   F   +
Sbjct: 297 SLRFFRFGGVGKLVLGGVAAGFALYVVRQVMEGLGASGLVAAPVAAWFPAVV 348


>gi|254374089|ref|ZP_04989571.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
 gi|151571809|gb|EDN37463.1| hypothetical protein FTDG_00250 [Francisella novicida GA99-3548]
          Length = 353

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 86/204 (42%), Gaps = 9/204 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +   + YI R +  SFL+  +    + ++   L +++  +++  +  +++  +   +P +
Sbjct: 3   LNRIDRYIFRTVFSSFLIVSIIFCILFFIFTYLAQVSNNTANVSNFELIIN-TLIQLPGI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P C  +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    
Sbjct: 62  LYTLLPACAMVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGY 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I P        +  +       +Y   +L+F+  D      +         GI     +D
Sbjct: 122 IAP--------ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQD 173

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN 204
            +  +I YA+S +   D  A + N
Sbjct: 174 NKVREIRYAESATYINDASANVFN 197


>gi|121997476|ref|YP_001002263.1| permease [Halorhodospira halophila SL1]
 gi|121588881|gb|ABM61461.1| permease YjgP/YjgQ family protein [Halorhodospira halophila SL1]
          Length = 350

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/358 (10%), Positives = 113/358 (31%), Gaps = 10/358 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+ R +  + L++   I+ + +V      ++ V+        +L  +    P +
Sbjct: 1   MRILTGYLARTVIAASLVALAAILALDFV---FSMVDGVADDGLDTTTMLLKALLGAPAL 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   +     L  +    EL  +   G S + +   VL   ++L++       +
Sbjct: 58  AYEAFPFATLIGALMGLGGLAARQELTAMRAAGVSVVQIAGAVLVGGVILALLATAVGEL 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P        +   ++     +   +   +  D   +++  +    + L+ + +    +
Sbjct: 118 VVPPAERQAAAVRGLSEADELRTG-PDGALWARDGRDFLRAERPRSASHLESVTLYRFVE 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
            Q  +   A     +  +  +   +G V       + +   ++  ++         + +V
Sbjct: 177 GQLTERIDADGAHYEDGQWRL---EGVVKTVYADHRLERRELEAWAWQGALSPDVLAVVV 233

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              +   +  L        +        YR    +++   L  +   L++I         
Sbjct: 234 ADPSTLPVPEL-WTYIQYLDANELDSGPYRLALWEKVATPLATLAMLLVTIPLVFTAVRS 292

Query: 300 RQRKKIHPIFISLSISFGVF-WGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               +   I + + ++F +               P    +L +  F    ++  +  +
Sbjct: 293 SGAGQRIVIGVLVGVAFFLLNRALGQAGVVYGVPPSLSALLPVVAFAALGLWGTLRVR 350


>gi|149914657|ref|ZP_01903187.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
 gi|149811450|gb|EDM71285.1| permease, YjgP/YjgQ family protein [Roseobacter sp. AzwK-3b]
          Length = 363

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 126/366 (34%), Gaps = 29/366 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LY+ R    +FL      V + ++I I++ +    +     + +L+I+    P+   
Sbjct: 2   TLHLYLARRFLLTFLAIFSVFVILLFLIDIVKEMQDFPA--FPFSEILEIALLKAPSANY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   M+RN+EL+++  +G S I  +   L +A L+ +      N I 
Sbjct: 60  EILPLIVILATVALFLRMSRNSELVVVRASGRSAIRALVAPLVVAGLIGVVSVTMLNPIV 119

Query: 123 PKCRSTIKQLSAKAQ--LALTFSYLEENLFFR---LDDDLYIKISKYNPN-NTLQG-IFI 175
                    L            +   E L+ R         I   + + + +TL    FI
Sbjct: 120 AASAKRHNDLMNSYLGWSINIMAIAPEGLWLRQGSETGQTVIHAERASSDVSTLYNTTFI 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESAN 234
               D    +   A S ++        L D ++   S   + + +  +  SY++ +    
Sbjct: 180 AFGLDGTPQRRITAASATLGDGE--WRLADAKLWDLSSGINPESTAQELDSYSVPSALTQ 237

Query: 235 SS--TIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                   K    ++  L   +     +           ++E    L + LF +   L+ 
Sbjct: 238 DRIIDSFGKPEYISIWDLPKFIGQLEESGFSARRYAVWMQTE----LARPLFLI--ALVM 291

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN------PYYIPILYLFL 343
             AA      R       +  ++ + FG+ +  ++     E          + P +  FL
Sbjct: 292 AAAAFTMRHSRLHNTGVSVLTAIMLGFGLHYIRNFAQILGENGQIPIMLAAWAPPVAAFL 351

Query: 344 FCISSI 349
             +  +
Sbjct: 352 LALGIL 357


>gi|322378344|ref|ZP_08052801.1| Conserved hypothetical integral membrane protein [Helicobacter suis
           HS1]
 gi|321149230|gb|EFX43673.1| Conserved hypothetical integral membrane protein [Helicobacter suis
           HS1]
          Length = 348

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 125/349 (35%), Gaps = 33/349 (9%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           + S + ++ IA V  +++          S   L ++  Y +P  +  + P  F       
Sbjct: 26  IASMVMLISIASVTLVVKL---------SFLDLAQLYIYSLPGTIFFIIPITFFGACAIG 76

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
           L  ++ + ELL+  + G +   ++K  L L I +S+ L I   I+ P  +S       +A
Sbjct: 77  LARLSYDHELLVFFSLGIAPKQIVKAFLPLCIFVSLVLLIFSLILIPASKSAYYSFL-RA 135

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDL 196
           +       ++   F +   D  + +     +     + +   +         AQSG I  
Sbjct: 136 KKDRVDVNIQAGEFGQKLGDWLVYVGHKKKD-IFSNLVLFSHKGLAFESFMIAQSGQIKN 194

Query: 197 DRQ--AIILNDGEVHRKSPISKDISIMKFKSYTL--QTESANSSTIVLKANDQNLSF--- 249
                 I L  G+ +        +  + F++  L  +   +         +   +S+   
Sbjct: 195 QEGVFGIELRKGDAY--FADKNQLRKVHFETLNLRNKLAFSAKKDAAYLHSHDYVSYWKK 252

Query: 250 LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIF 309
              P+P+    R             R TQ +   +F L S+       +   R   +  +
Sbjct: 253 AFGPHPDKNQQR-------------RFTQAILVSLFPLASLFLIPLFGIANPRFSKNLSY 299

Query: 310 ISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
           + + ++ G+++   ++  +       I +  +++     ++  +I + Y
Sbjct: 300 VYVLLAVGLYFLGMHVASQDAPISGTILLPIVWMLGAYGLYRRIIVRFY 348


>gi|89094619|ref|ZP_01167556.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
 gi|89081089|gb|EAR60324.1| hypothetical protein MED92_00300 [Oceanospirillum sp. MED92]
          Length = 362

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 125/368 (33%), Gaps = 17/368 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + YI R +   FL+  L +  +  +  +++ +  V  +  S    ++     +P  
Sbjct: 1   MSLIDRYIARHVLGGFLVVLLVVAGLDMLFALVEELKDVQGN-YSFAAAVEYVLLTLPRR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  ++EL ++   G S + +I  V+   +L+          
Sbjct: 60  LYEFIPLSSLIGCLLGLGILASSSELTVMRAAGISTLGIIISVMKPVLLIIALALGLGEF 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI-KISKYNPNNTLQGIFIVD-S 178
           + P      +             +    ++ R  DD+    I+   P+ +++G+   + +
Sbjct: 120 VVPHTEQRAQSHRQVMLTGGGAIHDASRVWHR--DDMTFLHINAVIPDGSVRGVTRYEFN 177

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST- 237
            D    +  +A+ G  +  +   +L D +  R                T + E     + 
Sbjct: 178 EDLTLKRSSFAEVGRYEDGK--WLLTDIQESRFPDAKGREQRATSSIVTTEIEQEIWESG 235

Query: 238 --------IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                   ++++  + ++S L+    N    +    E YR  F  +L   L      L++
Sbjct: 236 LTPDLLKVVMVQPTNLSISGLV-QYSNYLTDQGLASEQYRIAFWNKLLLPLAIFALVLVA 294

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +             +     I + + F +          +     ++ ++   L CI   
Sbjct: 295 VSFIFGPLRSVTLGQRLITGIIVGLVFKLSQDILGPTSAVFGFYPFVAVMIPILICIGVG 354

Query: 350 FLLMIKKK 357
           F L+ + K
Sbjct: 355 FWLLNRAK 362


>gi|302338546|ref|YP_003803752.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635731|gb|ADK81158.1| permease YjgP/YjgQ family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 360

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 122/332 (36%), Gaps = 12/332 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  +L +LR       +S +F  F+  ++++   +     +  +L  +L  S    P  
Sbjct: 1   MKKLDLMVLRAFFHILFLSLMFFSFVVVLVELFSNLWRYLQNDAALAEILFTSLLYYPKA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + +  P          L S   N ELL + ++G S +    P++ L+ LLS+  +  +  
Sbjct: 61  ITLALPPSILFAIAFTLGSYQANNELLALFSSGVSLLRFTVPIIVLSALLSVGSYFFQEY 120

Query: 121 IE-PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNT-LQGIFIVD 177
           +  PK     KQ+        +      N+     +  ++  I  YN  N  L G+ ++ 
Sbjct: 121 LVIPKS--AQKQILTDRLSGRSSVGNNNNVVILSGEGRFLYKIDYYNAKNRSLTGVSVL- 177

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            RD+Q +     +S     D     +       +    K ++   F +Y     S + S+
Sbjct: 178 IRDSQGNFTKRIESEWAQCDESGEWVFHRVRLFEVLSDKRVTEQFFLTYRNPELSESPSS 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF---HKRLTQWLFPVIFGLISIVAAD 294
              +    N              R    E Y  E    ++R +  L P+I  L+SI  + 
Sbjct: 238 FRKQIGSVNELQRKEAQVWIERLRKSGSERYHKELTAYYERFSFSLTPLIVALLSISLSG 297

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYII 326
                ++   +  +  S+ +S   +     ++
Sbjct: 298 ---YFKKNILLMSLLSSVIVSVLYYVSEMVLV 326


>gi|315636695|ref|ZP_07891925.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479010|gb|EFU69713.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 338

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 126/339 (37%), Gaps = 17/339 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+   +  +F      + FI  VI +++   L +  T +   L +I  Y IP ++ 
Sbjct: 2   KLQRYLYSQLAITFFPIFFGLFFITAVIFLVKISALTAIITVNFFELFRIFSYTIPDIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL +I + G +   ++K  L L +LL++ L +    + 
Sbjct: 62  YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK     KQ     +       ++   F +   D  I I+    NN  + + ++  ++  
Sbjct: 122 PKTDFERKQFV-NIKKNEANFNIKSGEFGQKFGDWLIFINDK-KNNLYEDVKLLKVQNDN 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +  +++  +D D+  + +   E        ++ + + +++  +    +++ T V   
Sbjct: 180 DQFVI-SKNAVLDNDKGVLSIRLAEGKAFLIEKEEFNQINYEAMYINDSISSAKTTVF-- 236

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                ++    +        + L  +       +    FP++   + I         R  
Sbjct: 237 ---TTTYDYWKDNIKNKVDLDDLTFF-------ILTSFFPLMSLFLVITFG--YFNPRYE 284

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
           K    ++  +SI        S          Y IPIL+L
Sbjct: 285 KNRAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWL 323


>gi|163735796|ref|ZP_02143225.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
 gi|161390882|gb|EDQ15222.1| permease YjgP/YjgQ family, putative [Roseobacter litoralis Och 149]
          Length = 365

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 121/358 (33%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R      +++ + +  +  ++ ++ +    +    S   + ++     P  + 
Sbjct: 2   ILHLYFARRFASWLMIAFIALFALIALVDLVDQTRRFADRGVSAAGIFELVILNTPQTIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI-TLIKPVLFLAILLSIFLFISENII 121
            + P    + T     S+ R++EL+    +G S +  LI PV  + +L ++       I+
Sbjct: 62  QILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALIAPVGVVIVLGTLATTTLNPIV 121

Query: 122 EPKCRSTIK-QLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPN-NTLQGI-FI 175
               +   +   + +     TFS   E L+ R    D  + I+  + NP+ + L  + F+
Sbjct: 122 AATSKKYNELSQTYRTGGGSTFSISTEGLWLRQGTDDGQMVIRAWRSNPDASVLFDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                    +  +A S  +      +  + D  + R      + +  +  +         
Sbjct: 182 AYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  ++   +N      N        +R      L + LF V   LI+  +A 
Sbjct: 242 IRESFGHPSTISIWE-MNDFIKQLNQAGFSSLQHRVWLQSELARPLFLVAMVLIA--SAF 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
                R       +  ++ + F +++  S+ +   E     + +  +        +  
Sbjct: 299 TMRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAF 356


>gi|254460215|ref|ZP_05073631.1| permease, YjgP/YjgQ family [Rhodobacterales bacterium HTCC2083]
 gi|206676804|gb|EDZ41291.1| permease, YjgP/YjgQ family [Rhodobacteraceae bacterium HTCC2083]
          Length = 365

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 125/358 (34%), Gaps = 18/358 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R   R FL + L  +    +I +++++    S   S + ++ ++ +  P  + 
Sbjct: 2   ILHFYFARRFFRVFLTTLLIFLAFLTLIDLVEQMRRFDSKDVSFSDIVFLTLFNAPGAIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +   ++  ++ R +EL++  + G S +  +   + +A ++ I      N I 
Sbjct: 62  QILPLVMILSAVSLFLTLARTSELVVTRSAGRSALVTLASPMCVAAVIGITTVTLFNPIV 121

Query: 123 PKCRSTIKQLSAK--AQLALTFSYLEENLFFRLDD---DLYIKISKYNPN-NTLQGI-FI 175
                    L  +  +Q   T S   + L+ R  D      I     + +  TL    F+
Sbjct: 122 ASTTRQYITLEQEYKSQKKNTVSIGRDGLWLRQGDENGQTVIHALSTSDDMRTLFDARFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA-- 233
             + D+Q      A    +      +I         +  + + +  +     L T     
Sbjct: 182 QYNTDSQPKTRIIADEARLTNTGWQLIRAK-HWSLDTSGNPEETAREIDVLMLPTTLTIE 240

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK--RLTQWLFPVIFGLISIV 291
           N      +    ++  +   +            T R +  +     + LF +   L+   
Sbjct: 241 NIRDSFSEPAAISIWEM---DAYIEGLEEAGFSTRRHKVWQQMEFARPLFLMAMVLVG-- 295

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           A+      R  K    +  ++ + FG+++  ++    + +N     ++  +   I+SI
Sbjct: 296 ASFTMRHTRFGKAGVAVLAAIMMGFGLYYVRNF-AQILGENGQLPTMIAAWTPPIASI 352


>gi|84516314|ref|ZP_01003674.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
 gi|84510010|gb|EAQ06467.1| permease, YjgP/YjgQ family [Loktanella vestfoldensis SKA53]
          Length = 364

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 116/338 (34%), Gaps = 14/338 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +FL        I   + ++++    +S+   L  LL ++   IP  + 
Sbjct: 2   ILHRYFARRFLMTFLGVLAVFFLIMLFLDLVEQSRRYASAEAGLRDLLTLTLLNIPRAIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL++    G S +  I   L + +L+ I      N I 
Sbjct: 62  EILPLIMILAAIGLFLGLARSSELVVTRAAGRSALRAILAPLAVGLLIGIVAVAVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYL-EENLFFR---LDDDLYIKISKYNPNNT-LQGI-FIV 176
                  +      +   +   +    L+ R    D+   I+ +  N + T L  + F+ 
Sbjct: 122 AATSKEYEARGGALRGNASALSIGSSGLWLRQGASDEQTVIRAAGANLDGTVLTDVTFLT 181

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            + D    +   A S  +     A +L + +V      +           T++  S  + 
Sbjct: 182 FTPDVGPARRVNAASAVL--TDGAWVLRNAKVWTFG-GTLTPEAGAVTQATMRIASTLTP 238

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPEL---LETYRSEFHKRLTQWLFPVIFGLISIVAA 293
             +  +     S  +   P   +   E     + +    H  + Q +F +   +I   A+
Sbjct: 239 DQIRDSFGTPSSIPIWQLPAFIDRLREAGFSAQRHLVWLHSEIAQPVFLMAMVMIG--AS 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                 R  +    +  ++ ++F +++  ++     E 
Sbjct: 297 FTIRHQRGGRTGLAVMTAILLAFVIYFIRNFAQVLGEN 334


>gi|328948913|ref|YP_004366250.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
 gi|328449237|gb|AEB14953.1| permease YjgP/YjgQ family protein [Treponema succinifaciens DSM
           2489]
          Length = 356

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 7/218 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    Y+L+     F+ + +F V +  +  +   +    S   S   +  I  Y IP  
Sbjct: 1   MKLV-FYMLKRFFPVFIGAVMFFVLVLCLTDLFMNLWNYISKNVSSRDVALILIYYIPKA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P      T  +L+      ELL +  +G S      P+L +A+ +S  LFI E+ 
Sbjct: 60  VWYAVPIAMLFATAYMLSDFYARNELLAVFASGISLFKFSVPLLTVAVAMSFALFIFEDN 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKY--NPNNTLQGIFI-VD 177
           I     S   QL     L+   S     +    +    I  + +  N   +L  +++   
Sbjct: 120 IVVPSFSKKTQLQESV-LSKEKSLNNSKIVIMAEGGNVIYKADFFNNKAESLSKLYVLFR 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS 215
           + D +   + YAQ      +  +  L +   ++    +
Sbjct: 179 TEDKKPDAVVYAQKAFWKNN--SWKLENAVEYKFQDEN 214


>gi|85374866|ref|YP_458928.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84787949|gb|ABC64131.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 365

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 118/326 (36%), Gaps = 15/326 (4%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
            +++        LL  +G  +P ++    P+   + T   L ++N+N+E++ +   G S 
Sbjct: 45  EILAVEGNGQGELLTYAGLRVPQLVQRFLPYSVLLATIITLIALNQNSEVIAMKAAGLSA 104

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSA-KAQLALTFSYLEENLFFRLDD 155
             ++ P+L  A L+++  F     +  +  +T+K   A +       S ++ N++     
Sbjct: 105 HQVLAPLLLTAGLVALVSFGFNERVVTRATATLKAWEATEFGAVPPDSDVKANVYITDGT 164

Query: 156 DLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI--ILNDGEVHRKSP 213
           ++ +                 D R         A +G I    +A+     D     ++P
Sbjct: 165 NI-LTARTVAGTG-------ADIRLGDVTWYRRAPTGQIAEQVRAVSASFVDPGWQLENP 216

Query: 214 ISKDISI--MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR--PELLETYR 269
            S DI+          +  E    + I L+A D +            +Y          R
Sbjct: 217 QSFDITTANTTTSEAMVVGEGLTPAQIELEAIDPDAVPFWRLGSAIDSYEAIGRRTAELR 276

Query: 270 SEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKI 329
           +++  +L+  L   +  L+  VAA   A   Q      I + L  ++ V    +  +   
Sbjct: 277 AKWWHKLSGPLSAFLMPLLGAVAAFGLARSGQLFIRAVIGMGLGFAYFVVDNAALAMGSF 336

Query: 330 EQNPYYIPILYLFLFCISSIFLLMIK 355
              P ++     FL  +     ++I+
Sbjct: 337 GGYPPFLAAWAPFLLFLLVGETVLIR 362


>gi|93004885|ref|YP_579322.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
 gi|92392563|gb|ABE73838.1| permease YjgP/YjgQ [Psychrobacter cryohalolentis K5]
          Length = 408

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 54/144 (37%), Gaps = 1/144 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K    Y+      + + + + +  +  V   L  ++ +   + ++   ++   Y  P  
Sbjct: 27  LKVLSRYVKLNALLAIIAAVIGLWALQLVFSYLSELDSL-DGSYTMGEAIRYIFYRSPYF 85

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    +     L  +  N+EL+++   G S   ++  VL  A++  +        
Sbjct: 86  LEQFIPTGALLGAVVGLGLLANNSELVVMRAAGISVYRIVSWVLQPAMIFVVLALFINQF 145

Query: 121 IEPKCRSTIKQLSAKAQLALTFSY 144
           + P       +++++   +L  S 
Sbjct: 146 VLPYSNQLANEINSEDNSSLVTSV 169


>gi|56697305|ref|YP_167671.1| YjgP/YjgQ family permease [Ruegeria pomeroyi DSS-3]
 gi|56679042|gb|AAV95708.1| permease, YjgP/YjgQ family [Ruegeria pomeroyi DSS-3]
          Length = 365

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 126/362 (34%), Gaps = 14/362 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SFL+  L  + +  +I +++++        S+  L+ ++    P  + 
Sbjct: 2   ILDRYFARRFIQSFLVIGLVFLGLVLLIDLIEQLRRFEGFEVSMGQLVGLTLLNAPAAIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   + +A+++ +    + N I 
Sbjct: 62  EILPLLMILSTIVLFVGLARSSELVVTRAIGRSGIRALVGPVLVALVIGLLAVTTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDD---DLYIKISKYNPNN-TLQGIFI- 175
                  + L+   +       S  +E L+ R  D      I  + +  +  TL  + I 
Sbjct: 122 AATAVRYQTLADTYRNGGPSVLSLSDEGLWLRQGDAGGQSVIHATGFGGDGVTLFDVTIL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTESAN 234
             + D    +   A+S  +   +   +L   +V   K   + + + +      + T    
Sbjct: 182 SYAPDGSAQRRTIAESAQLQDGK--WLLQKAKVWPLKVGQNPEANAVYHDRIEMPTSLTQ 239

Query: 235 SSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                     + +S + L              + ++      L + LF V   L+   AA
Sbjct: 240 ERIRDSLGRRETVSIYDLPQTIEQLQQAGFSTKRHKVWLQVELARPLFLVSMVLVG--AA 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFLL 352
                 R       +  ++ + F +++  ++     E     + +  +        +   
Sbjct: 298 FTMRHTRFGGTGLAVLSAVLLGFTLYFTRNFAQILGENGQIPVALAAWAPPVAAIMLTFG 357

Query: 353 MI 354
           ++
Sbjct: 358 LL 359


>gi|297250819|ref|ZP_06934296.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837907|gb|EFH21845.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YI+R +    + + L  + +    +I+  +  +   + +   L +     +P  
Sbjct: 1   MNLISRYIIRQMAVMAVYALLAFLALYSFFEIINEVGNLGKGSYNGAKLGQYVLMQMPAH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +     L+ +   +EL +I  +G S   L+  +    ++ +I        
Sbjct: 61  AYELMPLAVLIGGLVSLSQLAAGSELTVIKASGMSTKKLLLILSQFGLIFAIATAALGEW 120

Query: 121 IEPKCRSTIKQLSA-----KAQLALTFSYLEENL 149
           I P      + + A     K     T  +L+E  
Sbjct: 121 IAPALSQKAENIKAAAINGKISAGNTGLWLKEKT 154


>gi|255613816|ref|XP_002539536.1| Inner membrane protein yjgQ, putative [Ricinus communis]
 gi|223505146|gb|EEF22847.1| Inner membrane protein yjgQ, putative [Ricinus communis]
          Length = 283

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 106/286 (37%), Gaps = 10/286 (3%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           M  ++EL+++  +G S  T+ K +L + ++ ++  F+   II P      +++  +A  +
Sbjct: 1   MASSSELIVMRTSGISLQTIAKMLLSIGLVFALVTFLIGEIIAPISEKMAQRIRIQATDS 60

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRDTQTHKIYYAQSGSIDLDR 198
           +     +  L+ + D   ++ ++   P+ +L  I I D     +   I +A  G  + D 
Sbjct: 61  VVAQDFQSGLWIK-DGSSFVNVATVMPDTSLVDIRIYDFDAQFRLRNISHADKGYFEDDH 119

Query: 199 QAI--ILNDGEVHRKSPISKDISIMKFKSYTL-QTESANSSTIVLKANDQNLSFLLNPNP 255
             +  +        KS  +  ++   FK              ++L   ++  ++ L    
Sbjct: 120 WILSNVTQTKMHTSKSAQNNSVTSQFFKQTKWESLIRPELLNVLLVLPEKMSAWNLYSFI 179

Query: 256 NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSIS 315
              +   +    Y+     +L   L  ++  ++++         R       IF  + + 
Sbjct: 180 QYLHQNGQRSTRYQVALWSKLVYPLACLVMVMLALPFGFL--QQRAGGISAKIFAGIFLG 237

Query: 316 FGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
                    F ++    + +P    I    LF  + + +L   ++ 
Sbjct: 238 VVYQIMNRVFVHLGVLNDWSPLVSAISPTLLFLAAGLGMLYYVERR 283


>gi|331007486|ref|ZP_08330657.1| putative permease [gamma proteobacterium IMCC1989]
 gi|330418710|gb|EGG93205.1| putative permease [gamma proteobacterium IMCC1989]
          Length = 362

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 117/364 (32%), Gaps = 10/364 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    YI R    S L+  L I  +  + +++  +  ++ +  +    L      IP+ 
Sbjct: 1   MRLLNAYIFRTTVVSILVVLLVITALDILAKLIDELGNLTPA-YTFAEALIYVVLAIPSS 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                PF   +     L S+   +EL+++   G S + L   VL   +     + +    
Sbjct: 60  FYQYMPFAGLVGGLVGLGSLASTSELVVMRAAGVSLLRLTWAVLKPVLWFIAAMLVFAEY 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P      +   +        +   +   +  +  L++  +    N  L G+      D
Sbjct: 120 VIPVSDQYAESRRSALLQGGNTALSAKGGVWNREGTLFMHFNSVQANGKLLGVTRYQYDD 179

Query: 181 TQT-HKIYYAQSGSIDLDR----QAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SAN 234
            Q      +A++     D       +     +    S     I+   + S   QTE S N
Sbjct: 180 KQRLTLASFAETALYTADGWREENVVETRFLDAQSSSDKEALITTATYPSRPWQTELSPN 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL--FPVIFGLISIVA 292
             TI+++  D      L         +      Y   +  ++ Q L    ++   IS + 
Sbjct: 240 LLTILVQDTDNLAITKLYDYAQYLEKQNLDNGKYLLAYWGKVLQPLVIISLVLVAISFIF 299

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
              R +    +    + + +             +     +P +  +L +       +FLL
Sbjct: 300 GPLREVTMGYRIFTGVVVGIVFQLTQKLLGPASL-LYGISPLFAVLLPILFCFGVGLFLL 358

Query: 353 MIKK 356
              +
Sbjct: 359 ARTR 362


>gi|149371725|ref|ZP_01891141.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
 gi|149355352|gb|EDM43912.1| hypothetical protein SCB49_09980 [unidentified eubacterium SCB49]
          Length = 338

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 119/343 (34%), Gaps = 10/343 (2%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L  + I   + + ++I+ +  +    N +             ++ P    +      + 
Sbjct: 1   MLLFIPIGITVHLAEKIDKILDNEVPFNAVAIYFLEFTVYFANLLFPLFLFLSVIWFTSK 60

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +  NTE++   ++G S    ++P +  A ++ +        + P   +   + + K  + 
Sbjct: 61  LANNTEVIAFLSSGVSYYRFLRPFMIGATIIFVLGLGLTLYLAPLASTGYNEFTYKYLVR 120

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
                 + N+F +++D+ YI +S +N  +N+     +    + +      A     +   
Sbjct: 121 KKDRD-KGNIFRQINDNDYIYVSYFNTLDNSGSHFTLEHFEEEKLVYKISANRIRYNEKD 179

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
               L   +          +        T   +  + + +   A   N S L +      
Sbjct: 180 STYTLQSYKKRTIGVNDDILESRASLDTTFSFKLEDLTPVKYIAETLNYSKLNSYIEQEK 239

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                 +  Y  E +KR +      I  +I++      ++ R+      + I + I   +
Sbjct: 240 ERGSSYINRYVLEKYKRFSIPFSVFILTIIAVSV---SSVKRRGGMGANLAIGIGIGM-I 295

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKK 357
           F  F  I   + Q   + P++  +     F I +I+LL   K+
Sbjct: 296 FVFFDKIFGTLAQQSDFSPLVATWFPNVIFAILAIYLLRNAKR 338


>gi|110634109|ref|YP_674317.1| permease YjgP/YjgQ [Mesorhizobium sp. BNC1]
 gi|110285093|gb|ABG63152.1| permease YjgP/YjgQ [Chelativorans sp. BNC1]
          Length = 359

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 113/354 (31%), Gaps = 15/354 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y  R        + + +  + +++   +           + +  L ++   +P ++
Sbjct: 5   TLGRYFFRRYAVITAWNFIGVAALVYIVTFTEITGRAGDLEGFTTSWALGLAALQLPIIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   +     L S+NR  EL+I    G S    + P+ F A +  +   +  N I
Sbjct: 65  QQAVPFIGLVAAIATLISLNRKYELVIARAAGISAWQFLTPIAFGAFVFGLLTVLVLNPI 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD--LYIKISKYNPNNT--LQGIFIVD 177
             +  ++ + L A  + A T +  +E    +  D     I         T  ++ +F + 
Sbjct: 125 AARAFASAQMLEATVRGADTSNNAKERWIKQRTDQGETIIGADAALAGGTELVRPVFFII 184

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D    ++  A S  +        L D    +     + I+           +      
Sbjct: 185 GDDRIAERL-DAASAFLRDG--YWELVDVVRRQGGNAPEKIAT---ARVPTNLKPEFVGQ 238

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            +   +  ++  L        +        +  + H  +T    P++  +  I A     
Sbjct: 239 ELTDPDAVSIFALPGM-IETAHSFGLRANAFAMQLHSLITLP--PLLVAMTLIAATVSMR 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
             R  +    I   +   F ++   S ++       +  P +  +   + ++F 
Sbjct: 296 FTRMGQSATVILGGVVAGFLLYVS-SVLVRAFGDAGFVPPPIAAWTPVMVAMFF 348


>gi|224418390|ref|ZP_03656396.1| permease [Helicobacter canadensis MIT 98-5491]
 gi|253827708|ref|ZP_04870593.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141921|ref|ZP_07804114.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511114|gb|EES89773.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130952|gb|EFR48569.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 355

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 130/370 (35%), Gaps = 35/370 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI+    + F +  + +     +I +++ ++ +    +S N+++ +  Y     
Sbjct: 1   MTLFSRYIISLYLKYFFILFVSLECFFVLIDLVKYLDELP---QSANLIVLLIFYDFVYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    +  SM RN++       G S+  +  P+  ++ L+++   +    
Sbjct: 58  SNFILPLSLVLAQIVLSISMLRNSQFTAFLALGYSKARIFLPIFIVSFLITLLFVLLN-- 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
             P   +  +      +  L     + +LF + +++ YI   K  P   + + + + +  
Sbjct: 116 ATPFAYAKERVDLIIERGYLGSY--KNDLFIKYNEN-YIYFEKIFPLLKMAENVKVYEVF 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----------LNDGEVHRKSPISKDISIMK-FKSYTL 228
           + Q  KI  A   +   D+  +           L  G+   K    K    ++ FK   L
Sbjct: 173 NKQVIKIIEAPKATFIEDKWKLEDARITTLDSNLEVGKNPLKIEEQKTYETLEGFKPKIL 232

Query: 229 QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                   ++ +    + +  L     N    R  L                FP    L+
Sbjct: 233 DNIYEKQGSVSIVDALEAIWLLKKQGVNTQKLRSSLY-----------ALIFFPFFAPLV 281

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLF 344
            +  A       +   I  I + + +   + WG  +   ++  + +  P    IL + + 
Sbjct: 282 MVCLARFTPNSNRYANIGGITLGMILGVLIVWGVFFSFSRLSMSGFLPPEVSIILPIGIL 341

Query: 345 CISSIFLLMI 354
            + S++L + 
Sbjct: 342 GLVSLWLFLR 351


>gi|330994315|ref|ZP_08318243.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
 gi|329758782|gb|EGG75298.1| Lipopolysaccharide export system permease protein lptG
           [Gluconacetobacter sp. SXCC-1]
          Length = 369

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 119/368 (32%), Gaps = 37/368 (10%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +      + + +V +  ++ +L+++  +      L  +L  +   +P +     P
Sbjct: 16  YLSREMMGKVFATAVIVVSLMEILSLLEQVTEIMHRHLGLTGVLYYAVMRLPLLFCNAMP 75

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L  M  + E+ I+   G S   LIK  L   I L I   +  + + P+  
Sbjct: 76  IAVLIGALLALVQMTTSNEIAIMRAAGLSTPGLIKLFLPTTIALGILCGLVNDQVTPRTE 135

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDL-YIKISKYNPNNTLQGIFIVDS-RDTQTH 184
             + Q                N + R  +DL  I       +  L  + +    R +   
Sbjct: 136 QALAQWWNVTTPGAIAEA--HNYWVRSGNDLISIHFLGSGAS-VLGDVTVYHRDRQSLLQ 192

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           K+    +                 H     ++ +S++      L  +     +I L   D
Sbjct: 193 KVTTLDTARYVHG-----------HWYGTPTRMLSVISPTRIDL-LDVPPGQSIRLDWPD 240

Query: 245 ---------------QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
                          Q++S +L+          +    + +E   R+   L   +  L++
Sbjct: 241 TLTPGYITQLTISFTQSISTMLD-EEAGRLPSSQSPSFFLTEILGRIMLPLTFTVMLLLA 299

Query: 290 IVAA--DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCIS 347
           +       RA +R    +  +   L   F VF G    +      P  + I    L  I 
Sbjct: 300 VPVVYIPPRAGIRSWLPVWCLGAGL--LFVVFQGLLRALGNAGTLPSLMAIFVGILIFIL 357

Query: 348 SIFLLMIK 355
            +  ++++
Sbjct: 358 GVITVLLR 365


>gi|323137698|ref|ZP_08072774.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
 gi|322396995|gb|EFX99520.1| permease YjgP/YjgQ family protein [Methylocystis sp. ATCC 49242]
          Length = 361

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 105/330 (31%), Gaps = 16/330 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPTVL 61
           +   Y      R+ L     I  + +V+  ++ +   S + ++   ++  ++   +P   
Sbjct: 5   TITRYFAWRFMRTILAIFFTIFCLMFVVVFVEMLRRASDNPQAGAGMVALMTAMKVPAAA 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            M+ PF     +      + R  EL++    G S    I P +  A+L+ +F     N +
Sbjct: 65  EMILPFAVLFGSMATFVDLTRKLELIVARAAGMSVWQFITPPVLTALLIGVFSVAVYNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF--FRLDDDLYIKISKYNPNNTLQGIFIV--- 176
               +    Q+  +         ++  ++      D L +  +        +  F+    
Sbjct: 125 SASMKQRSDQMELELFGVPGSLRIDHGVWLRQHGVDGLAVMHAMGTAKGGTELTFVSVNI 184

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE-SANS 235
            S +    +   AQS  +      + + +G +                SY L T+ +   
Sbjct: 185 YSPNGGFLERVEAQSARL---EPGVWVLNGAIVSAPGEPARP----VASYMLATDLTPEQ 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
           +            + L                YR +F   L + L  ++  ++ + A+  
Sbjct: 238 AAAATTPPQGTPFWELPEMTARTTEAGLDSTGYRLQFQTLLARPL--LLVAMVLVAASFS 295

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYI 325
               R       +   ++  F ++     +
Sbjct: 296 LRFFRFGGVAKTLSGGVAAGFVLYIVTKVL 325


>gi|296115280|ref|ZP_06833920.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978183|gb|EFG84921.1| permease YjgP/YjgQ family protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 372

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 121/356 (33%), Gaps = 13/356 (3%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R +     ++   I+ +  V+ +L+ +  + S    L+ +L  +   +P +     P
Sbjct: 19  YLTRELLSKIFITAAVIIALMEVLALLEEVTEIMSRHLGLSGVLYYAVIRLPLLFGNAMP 78

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L  +  + E+ I+   G S   L +  L   + L +   + ++ + P+  
Sbjct: 79  LAVLIGALITLVQLTSSNEISIMRAAGLSTAGLFRLFLPAVLGLGVLCVVVDDQVAPRSE 138

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNN-TLQGIFIVDSRDTQT- 183
               +    +          +  F      +  + I         L  + +    D    
Sbjct: 139 IAQARW-WNSTAPAPNGVTRDVWFRT---GMTLVNIGGVAHGGRELHDVTVYRRDDEGAL 194

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            K+ +  +    ++R + + +           +D+++      TL    A +  ++L+ +
Sbjct: 195 QKVIHLPTVRYFINRWSGVPDHALTVLSPTRVEDVALQDDTRLTLDWPRALTPDVLLQMS 254

Query: 244 DQNLSFLLNPNP--NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA--DKRALV 299
           +     ++      +N     +    + +E   R+   L   +  L++I       RA  
Sbjct: 255 ENTPLSIMTMVRVLHNAFPSSQSPAFFMTEILGRIMLPLTFTVMLLLAIPVVYIPPRAGA 314

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
           R    +  +   L   F VF G    +      P  + +    +  I  +  ++++
Sbjct: 315 RSWLPVWCLGAGLV--FVVFQGLLRALGNAGTLPSVVAVFVGIVIFILGVVTVLLR 368


>gi|310816138|ref|YP_003964102.1| putative permease [Ketogulonicigenium vulgare Y25]
 gi|308754873|gb|ADO42802.1| putative permease [Ketogulonicigenium vulgare Y25]
          Length = 360

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 130/361 (36%), Gaps = 25/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y      ++FL +      +  +I++++++       +S      ++   +P  L 
Sbjct: 2   ILHRYFALRYFKAFLGTAAGFFLMLVMIELIEQLRRF--GGQS--DFPALTLLNVPATLY 57

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS-RITLIKPVLFLAILLSIFLFISENII 121
            V P    +    +   + R++E+++    G S  I LI PVL + ++  + +     I+
Sbjct: 58  QVLPLIVIISALVLFLGLARSSEMVVTRAAGRSALIALIAPVLIVMLMGLLAVMAFNPIV 117

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDD---DLYIKISKYNPNN-TLQGI-FIV 176
               R    +++     +       + ++ R  D      I+ +  +P+  TL+G+  + 
Sbjct: 118 ASTSREYDNRIATITGSSRILQIGGDAIWLRQGDEDGQSVIRAAASDPDGTTLRGVTMLS 177

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTL--QTESA 233
            + D    +   A + ++  D     + + +V   +   + + S     +  +       
Sbjct: 178 YTNDGIPARRIDAAAATLSGDH--WQMQNAKVWPLNTGQNPEASATIHATLAVPSNLSPD 235

Query: 234 NSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                       ++  L   +    +        +   +SE        L   +  ++ I
Sbjct: 236 EIRNSFGNPASISVWELPAFIKRMEDAGFTAQRQIVHLQSEL------ALPAFLVAMMLI 289

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R  +    +  ++ ISF +++  + +   + +N    P+L  ++  +++I 
Sbjct: 290 AAVFTLRHQRGGRTGMMVLFAVLISFSLYFIRN-LAQILGENGQLTPLLAAWVTPLAAIA 348

Query: 351 L 351
           L
Sbjct: 349 L 349


>gi|319778586|ref|YP_004129499.1| Permease-like protein [Taylorella equigenitalis MCE9]
 gi|317108610|gb|ADU91356.1| Permease-like protein [Taylorella equigenitalis MCE9]
          Length = 384

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 142/381 (37%), Gaps = 31/381 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+    +   I R+  +  + ++ +    + ++  + + +   ++ ++L +  + +PT 
Sbjct: 1   MKTARKLLSHEIYRTCSLVLVVLLGLFTFFETIEEFDKI-NEIYTVWVMLALQAFQLPTR 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    + +   L ++ +  EL+I+  +G S   L+  + ++A+ + +   +   +
Sbjct: 60  LYDILPIGLLIGSVVALANLAQRNELVILRVSGLSSRKLLFMLWWIALPIIVLATLLSEV 119

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI---SKYNPNNTLQG--IFI 175
           I P     +  ++       +        F         ++   +    +  ++   +F 
Sbjct: 120 ITPWADQKVSAINMAVLGKKSNQLNSGYWFREPVSSNTYRVINLTNLKNDGEIENIKVFE 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI--------------ILNDGEVHRKSPISKDISIM 221
             S D Q  ++  A++G+++ +   +              ILND       P+ K  +  
Sbjct: 180 YSSIDNQFKRLLSAETGTLENNELELTNVVQTVSLVDINKILND----EHDPVLKVSNSN 235

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELL-ETYRSEFHKRLTQWL 280
           K +   L+T       +  +     +S L   +  +     +L    +     ++L+   
Sbjct: 236 KLEKIKLKTSLTQDRLLATELKPDRMSTLKLLDYIDYLKENQLEHNKHVVALWRKLSYPF 295

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIH--KIEQNPYYIPI 338
             ++  +I++         R+      IFI + +    F      ++   + + P +I  
Sbjct: 296 ALIV--MITLATPLGFIQTRKGGVGAKIFIGILLGIVFFMVNQLSLNMGMLSKLPAWITA 353

Query: 339 LYLFLFC--ISSIFLLMIKKK 357
               +    ++   L MI++K
Sbjct: 354 TLPNIIAMILAIYALYMIERK 374


>gi|126728788|ref|ZP_01744603.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
 gi|126710718|gb|EBA09769.1| permease, YjgP/YjgQ family protein [Sagittula stellata E-37]
          Length = 364

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 129/364 (35%), Gaps = 23/364 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y  R     FL           ++ ++  +  +     S    L++    +P  L 
Sbjct: 2   TLHFYYARRFLSLFLGIFAVFALFQGLLDLIDELRQL-GDEVSFGETLQLVILKLPEGLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS-RITLIKPVLFLAILLSIFLFISENII 121
            + P    + T  +   + R++EL+     G S    L+ P     ++ +I + +   I+
Sbjct: 61  EILPLVMILATVAMFIGLARSSELVATRAAGRSGLTALMAPATVALLIGAIIVAMMNPIV 120

Query: 122 EPKCRSTIK-QLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNNT-LQGIFIV 176
               +     + + ++      S+  E L+ R    D    I+ ++ NP  T L  + IV
Sbjct: 121 AATSKRYADLRETYESGNTSAVSFGPEGLWLRQGGEDGQSVIRAARANPEATELYDVSIV 180

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESAN 234
             + D        A+S ++     A  L D +    +P  + ++       Y L +    
Sbjct: 181 TYAPDGGPAMRIQAESAALSDG--AWHLTDAKAWPLTPGLNPELGARLHVEYELPSTLTR 238

Query: 235 SSTIVL--KANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            S      + +   +  L   +     +       +  Y  E    L + LF V   L+ 
Sbjct: 239 ESIRDRFGRPSAVAIWDLPQFIAGLEESGFSARRHIVWYNME----LARPLFLVAMVLVG 294

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                +    R  +    +  ++ + FG+++  S+    + +N    P++  ++   +S+
Sbjct: 295 AAFTMQP--TRLARTGLAVLSAVLLGFGLYYVRSF-AQIMGENGQLAPVVAAWVPPTASV 351

Query: 350 FLLM 353
            L +
Sbjct: 352 LLAL 355


>gi|87198520|ref|YP_495777.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
 gi|87134201|gb|ABD24943.1| permease YjgP/YjgQ [Novosphingobium aromaticivorans DSM 12444]
          Length = 366

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 28/326 (8%)

Query: 38  LVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
           ++++       LL      +P ++    P+   + T   L ++N+N+E++ +   G S  
Sbjct: 46  VLAAPGNGQGELLTYVSLRMPQLVSRFLPYSVLLATIITLMTLNQNSEVIAMKAAGLSAH 105

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS-AKAQLALTFSYLEENLFFRLDDD 156
            ++ P+  +A   S+  F     I  +  ST+K             S  + N++ +   +
Sbjct: 106 QVLAPLFLVAAATSVVTFAFNERIVTRSTSTLKAWQDVDYGPIPVESATKSNVWLQDGPN 165

Query: 157 LYIKISKYNPNNT---LQGIFIVDSRDTQ--THKIYYAQSGSIDLDRQAI---ILNDGEV 208
           + +             + G+     RD      +I  A S S           ++ D + 
Sbjct: 166 I-LFARSVAGQGKAMHMTGVSWY-RRDPTGMVTEIVTAPSASYANPGWRFREPVMFDVQS 223

Query: 209 HRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL---LNPNPNNPNYRPELL 265
            RK+ ++        + +    E        + A+ ++L+ L   L    +      EL 
Sbjct: 224 ARKTALAAS------EVFAKSVEPVQVVISRVDADAESLTQLTGSLAAIRDAGFRTTELD 277

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
             +      +++  L  ++  L+  VAA    L R         I +++ F  F  F   
Sbjct: 278 GKW----WHKISGPLSALLMPLLGAVAAFG--LARSGHLFVRAVIGMALGFAYFV-FDNA 330

Query: 326 IHKIEQNPYYIPILYLF-LFCISSIF 350
              +     Y P L  +  F +  + 
Sbjct: 331 ALAMGNFGAYPPFLAAWAPFVLFLLI 356


>gi|313680974|ref|YP_004058713.1| permease yjgp/yjgq family protein [Oceanithermus profundus DSM
           14977]
 gi|313153689|gb|ADR37540.1| permease YjgP/YjgQ family protein [Oceanithermus profundus DSM
           14977]
          Length = 377

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 120/367 (32%), Gaps = 34/367 (9%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + YILR +    L+S L  V +            +      +  +L   GY +P VL
Sbjct: 3   TILDRYILREVVPVLLVSALLYVAVFLFGFFYVGSRWL--DGAPVLKVLTWLGYHVPGVL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V P             M     +L     G S + L++PVL L  LL+ F       +
Sbjct: 61  VQVLPMAVVSAVVIPFGRMATEGAVLATQAGGVSLVRLLRPVLLLGFLLAGFSLYLSENV 120

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
            P+  + ++                       L + + +  S Y+  +  + G+ +   +
Sbjct: 121 VPESNARVRGYWYDELTTPGHGLYRLRGKTVPLGNGIELFFSGYDWAHRAMTGVRLQLWK 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAII----------LNDGEVHRKSPISKDISIMKFKSYTLQ 229
           D Q   + +A  G        +             DG ++             FK+ ++ 
Sbjct: 181 DRQV-TVIFADRGVYQGRDLKLTGYRIYTVDYAAIDGLLNASDAQLPARLQQVFKNVSVP 239

Query: 230 TESANSSTIVLK-ANDQNLSFLLNPNPNNPNYRPELLETYR-------------SEFHKR 275
                S+TI +  + D+ L+   +P   +     E  + Y                FH +
Sbjct: 240 RSEEASTTIKVGLSRDEALANFADPLAADTLSLSEAWQRYTDPKLAPADRTDAGLAFHSK 299

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           L   L  V+  LIS+  A    +   R     + +S+ I+ G +  F  +   +      
Sbjct: 300 LALPLANVVLVLISLPFA----VYYGRSPGLSMGMSVMIAVGYYLVFL-LARSMGGLGML 354

Query: 336 IPILYLF 342
            P L  +
Sbjct: 355 PPALAAW 361


>gi|27379217|ref|NP_770746.1| permease [Bradyrhizobium japonicum USDA 110]
 gi|27352368|dbj|BAC49371.1| bll4106 [Bradyrhizobium japonicum USDA 110]
          Length = 363

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 127/359 (35%), Gaps = 25/359 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS----STESLNILLKISGYLI 57
            +   Y         + +      I  ++ ++  I +V      ++ S  ++ + S + +
Sbjct: 4   NTLGRYFAGRFV---VAALGVFASIFLLLVLVDYIEMVRKTSGLASASAIMVAETSLFRV 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           P +L  +TPFC  +       +++R  EL++    G S    I P L  A+L+ +   ++
Sbjct: 61  PQLLEKLTPFCMLIGAMTCYLALSRRLELVVARAAGVSAWQFISPALGSALLIGVIATVA 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEE--NLFFR--LDDDLYIKISKYNPNN--TLQ 171
            N +    R   K++ A+   +     +++    +     +D   I  +  +      L 
Sbjct: 121 YNPMSANLRELSKRMEAELFGSAPGGGIQDASGFWLNQVTNDGQTIINAARSEQQGVRLT 180

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
           G+ +     +    +   A+   +++ +   I  +  V R S     I         + T
Sbjct: 181 GLTLFRFDTEQHFKERVEAREAELEVGQ--WIFRN--VRRFSLDGPPIEQAV---LAIPT 233

Query: 231 ESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               +      +  + +SF   P+   +          YR ++HK L Q    ++  ++ 
Sbjct: 234 TLTEAQVRNSFSTPETVSFWQLPSYIRSSESSGFATAGYRLQYHKLLAQPF--LLAAMVM 291

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           + A+      R       +   +   F ++   S +   + +     PI   +L  +  
Sbjct: 292 LAASVSLRFFRMGGVQKMVLSGVGAGFLLYV-LSKVTEDLSKAELMHPIAAAWLPVVVG 349


>gi|34557088|ref|NP_906903.1| hypothetical protein WS0675 [Wolinella succinogenes DSM 1740]
 gi|34482803|emb|CAE09803.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 345

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 124/346 (35%), Gaps = 21/346 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M + + Y+     + F      + FI+ VI  ++   +      S   L ++  Y +PT+
Sbjct: 1   MGNLKKYLFGSFAQLFFPIFAVLFFISSVILFIKIAGVTFVVKMSFGELFELYLYSLPTM 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P  F   +   L  +++  EL ++ + G   +   +    L++L+S+FL +    
Sbjct: 61  IFFTIPVTFFSASVISLAKLSQEYELPVLFSLGIDPLRFSRLFFPLSLLVSLFLLLVSLA 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
           + P       +     + ++  + L+   F +   +  + +   +      + + +  S 
Sbjct: 121 LVPLSNEAYDRFLDHKKSSVNIN-LKPAEFGQKLGNWLVYVGDMDEGEKRYKEVVMFSSN 179

Query: 180 DTQTHKIYYAQSGSIDL--DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           D        A+   ++       + L  G  + K  +   I  + +    ++  +     
Sbjct: 180 DLGRESFILAKEALVESMEGNLELKLFRGSAYFKEELH--IKRVDYAQMLIRDSAFKEGG 237

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
             L         L     ++   R              L+  +   +F L S+       
Sbjct: 238 ASLGIMGYWKQALGGEKGSDKVRRK-------------LSSSILISLFPLASLFFIPLLG 284

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYII--HKIEQNPYYIPILYL 341
           ++  R + +  +  + I+ G+F+G  +I   H      + IP+++L
Sbjct: 285 IMHPRFQKNYSYFYVIIATGIFYGLVHIASNHLPLAGIFLIPLIWL 330


>gi|114798132|ref|YP_760297.1| putative permease [Hyphomonas neptunium ATCC 15444]
 gi|114738306|gb|ABI76431.1| putative permease [Hyphomonas neptunium ATCC 15444]
          Length = 351

 Score = 76.5 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 108/370 (29%), Gaps = 41/370 (11%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+     +  L++   +V +  V+  L   + + +        ++     +P + 
Sbjct: 3   SRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPA-GAGFEGQMRYMWLRLPALF 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             +  F F +       S+ R  EL+ I   G S    ++ ++ +  L ++      + +
Sbjct: 62  DRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDTV 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P    ++        L       EE     L D  ++   K      L GI I +    
Sbjct: 122 GPPASRSLLAWLGPEALQEDAQVPEE---LWLSDGKFLIELKSMQAEELTGITIFERNAE 178

Query: 182 QTHKIY-YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A++        A+    G   R+                   E     T   
Sbjct: 179 GAVVAITTAETARPADGGWAL---SGTGQRR----------------FDGEPPTDMTFWT 219

Query: 241 KAND-QNLSFLLNPNPNNPNYRPELLETYRS---------EFHK--RLTQWLFPVIFGLI 288
                ++L  LL+P  +        L   R          E     R    L  V F L+
Sbjct: 220 SPQTPESLQLLLSPPRDLAISNLIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLL 279

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILYLFLFC 345
           ++     +   R+      +   +++ F           +      +P     L +    
Sbjct: 280 AVPVM--QVYGRRSNADIAVAAGVAVGFFYMVVDGILKTLAENGSISPILAVALPILALF 337

Query: 346 ISSIFLLMIK 355
           + S++L + +
Sbjct: 338 LGSMWLALER 347


>gi|148651872|ref|YP_001278965.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
 gi|148570956|gb|ABQ93015.1| permease YjgP/YjgQ family protein [Psychrobacter sp. PRwf-1]
          Length = 449

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           +    Y+ +    + L + L +  +  V   L  +  + S   +    L    Y  P  L
Sbjct: 19  RIISRYVKKNALFAMLFAVLGLWALQMVFAYLAELEDI-SDAYTYVDALTYIFYRSPYFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P    +     L  +  N+EL+++   G S   ++  VL  A +  I   +    I
Sbjct: 78  QQFMPTGALLGAVVGLGLLANNSELIVMRAAGLSIYRIVGWVLQPAFIFVILALLINQFI 137

Query: 122 EPKCRSTIKQLS 133
            P+      Q+ 
Sbjct: 138 LPQSNVKASQIR 149


>gi|294678215|ref|YP_003578830.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
 gi|294477035|gb|ADE86423.1| permease YjgP/YjgQ family protein [Rhodobacter capsulatus SB 1003]
          Length = 366

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 114/313 (36%), Gaps = 18/313 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LYI R  G++FL+       + ++I+++++I  +  +  +L+    ++   +P+ L 
Sbjct: 2   TLSLYIARRFGQAFLIVAGAFWGVLFLIEMVEQIRRLDPARGALSDAAHLAALSVPSTLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +        + R++EL++I   G S + ++   + +A+L+ + L    N I 
Sbjct: 62  TIFPLVVMLSGVVAFLGLARSSELVVIRAAGRSALRMLLAPVTVALLIGVLLVAVGNPIV 121

Query: 123 PKCRSTIKQLSAKAQLA--LTFSYLEENLFFR----LDDDLYIKISKYNPNNT-LQGI-F 174
                  +++  + +     T S   E L+ R          I   + N + T L  + F
Sbjct: 122 SATSKRAEEIEGQLRAEGRQTVSIGREGLWMRQGTADGGQAVIHAMRGNADATALYQVTF 181

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAI-ILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           ++        +   A S  +      +    D  + R +   +D +  +  S      + 
Sbjct: 182 LLFDAKAGPVRRIDAASAWLTPGAWVLSEAKDWPLGRSTNPERDATRAQTISLPSTLTAE 241

Query: 234 NSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           + +      +   +  L   +             +   + E    L Q L  ++  ++ +
Sbjct: 242 SIADSFGAPSAMPIWELPGFIRALEAAGFSARRHIVWLQVE----LAQPL--MLAAMVLV 295

Query: 291 VAADKRALVRQRK 303
            A       R   
Sbjct: 296 AAGFTMRPARFGG 308


>gi|118590093|ref|ZP_01547496.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
 gi|118437065|gb|EAV43703.1| permease YjgP/YjgQ [Stappia aggregata IAM 12614]
          Length = 364

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 119/368 (32%), Gaps = 37/368 (10%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  LY      ++ L   LF   + ++  +L+ +         S+  +  IS   +P +
Sbjct: 5   RTLSLYFSGRFLKAILGLFLFAAVLIYLFDVLELVRRGGDREGFSVLRVAMISALRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF           +++R  EL++   +G S      P + + I+L I      N 
Sbjct: 65  LEQVIPFTVLFGAIAAFVTLSRALELVVARASGISVWQFSLPAILVGIILGILSITVYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT----------- 169
                +    +++A    +     L+        +D++++    +  +            
Sbjct: 125 AAVWFQQKSDEVAAGLFGSEQSFLLQ------SSNDVWVRQDGLDGESVLLAKQLLEGGT 178

Query: 170 -LQGIFIVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS---KDISIMKF- 223
            L+G+ I    +D    +   A    +    Q   L +  V+             I  F 
Sbjct: 179 LLRGVTIFTFDKDGTFRERIEADEARL--GDQIWYLENAIVYTTEQDPQPYGQYQISTFL 236

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
            +  ++    +  +I      + +   L  N   P YR  L           L + L  +
Sbjct: 237 TATEVRESIGSPESISFWNLPRFIE--LARNAGLPAYRYNLQYQTL------LARPL--L 286

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
           +  +I I AA    + R       I   +   F ++     +           P++  + 
Sbjct: 287 LVAMILIAAAVSLKVSRFGGLGSMILGGILSGFVLYVLTE-LAKDFGGAGIVPPLVAAWA 345

Query: 344 FCISSIFL 351
             I  + +
Sbjct: 346 PGIFGVLM 353


>gi|83953613|ref|ZP_00962334.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
 gi|83841558|gb|EAP80727.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. NAS-14.1]
          Length = 365

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 122/350 (34%), Gaps = 23/350 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++ +    SS       L  ++    P  + 
Sbjct: 2   ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLKTPETMN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++    G S ++ ++  +++A ++ +      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDDD---LYIKISKYNPN-NTLQGI-FI 175
                   QLS   +   T   S  +E L+ R   D     I+  + N + + L  + F+
Sbjct: 122 AATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSID------LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
             + ++   +   A S +++       D ++  L  G     +  + D   +        
Sbjct: 182 SYAPESGPARRIEADSAALEDGIWTLTDAKSWPLEVGVNAEGAAETFDTLTL-----PST 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +      ++  L  P+              ++      L +  F  +  ++
Sbjct: 237 LTLDRIRDSITDPGAVSIYDL--PDYIKQLELAGFSPRRHKVWLQTELARPFF--LVAMV 292

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            + +A      R       +  S+ + FG+++  S+     E     + +
Sbjct: 293 LVASAFTMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLL 342


>gi|83942393|ref|ZP_00954854.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
 gi|83846486|gb|EAP84362.1| permease, YjgP/YjgQ family protein [Sulfitobacter sp. EE-36]
          Length = 365

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 121/350 (34%), Gaps = 23/350 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++ +    SS       L  ++    P  + 
Sbjct: 2   ILHLYFARRFIMGFILISAVLFSLLVLVDMVDQARRFSSYDIGWLRLFGMTLLNTPETMN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++    G S ++ ++  +++A ++ +      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRAAGRSALSALQAPIWVAFIIGVMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDDD---LYIKISKYNPN-NTLQGI-FI 175
                   QLS   +   T   S  +E L+ R   D     I+  + N + + L  + F+
Sbjct: 122 AATAKRYIQLSDSIRAGGTSVLSVSDEGLWLRQGSDEGQTVIRAWRSNKDASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSID------LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
             + +    +   A S +++       D ++  L  G     +  + D   +        
Sbjct: 182 SYAPEGGPARRIEADSAALENGIWTLTDAKSWPLEVGVNAEGAAETFDTLTL-----PST 236

Query: 230 TESANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                    +      ++  L  P+              ++      L +  F  +  ++
Sbjct: 237 LTLDRIRDSITDPGAVSIYDL--PDYIKQLELAGFSPRRHKVWLQTELARPFF--LVAMV 292

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            + +A      R       +  S+ + FG+++  S+     E     + +
Sbjct: 293 LVASAFTMRHTRFGGTGVAVLASVLMGFGLYFIRSFAQILGENGQIPVLL 342


>gi|77463458|ref|YP_352962.1| putative permease [Rhodobacter sphaeroides 2.4.1]
 gi|221639316|ref|YP_002525578.1| permease Yjgp/YjgQ family protein [Rhodobacter sphaeroides KD131]
 gi|332558335|ref|ZP_08412657.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides WS8N]
 gi|77387876|gb|ABA79061.1| putative permease [Rhodobacter sphaeroides 2.4.1]
 gi|221160097|gb|ACM01077.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides KD131]
 gi|332276047|gb|EGJ21362.1| Permease YjgP/YjgQ family protein precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 364

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 117/372 (31%), Gaps = 32/372 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  L 
Sbjct: 2   ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++   G S +  +   + +A+ L        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
                     + +         S  +E L+ R     +   I   + N + T L  + F+
Sbjct: 122 AGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSID------LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
               + +      A+  +++         ++  L +     ++ +  ++ +        +
Sbjct: 182 TFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARAGLPGNLRVTS------E 235

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET-YRSEFHKRLTQWLFPVIFGLI 288
                        +   +  L       P Y   L    + +  H+   Q  F +   L 
Sbjct: 236 LTREGIQDSFGDPSAIPIWEL-------PAYVAGLERAGFSARKHRVWMQMEFALPATLA 288

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY--IIHKIEQNPYYIPILYLF---L 343
           ++V       +R  +      + L    G F  F        + +N     +L  +   L
Sbjct: 289 AMVLVAAGFTMRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPL 348

Query: 344 FCISSIFLLMIK 355
             +     L++ 
Sbjct: 349 IGVMGSLGLLLH 360


>gi|126462313|ref|YP_001043427.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103977|gb|ABN76655.1| permease YjgP/YjgQ family protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 364

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 117/372 (31%), Gaps = 32/372 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               YI R   R   +  L    +  +I +L ++   S    +L     +S   +P  L 
Sbjct: 2   ILSRYIARRFLRMVFIVFLAFFGLMMLIDVLDQMRRFSDEGITLVQAGLLSLLRVPATLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++   G S +  +   + +A+ L        N I 
Sbjct: 62  TILPLIVILAAVALFLGLARSSELVVVRAAGRSGLRFLVAPMVVALALGTVAVTVLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
                     + +         S  +E L+ R     +   I   + N + T L  + F+
Sbjct: 122 AGTSRQYDAAAGRLARGEASILSISKEGLWLRQGGSGEQTVIHALRSNTDGTRLYAVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSID------LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
               + +      A+  +++         ++  L +     ++ +  ++ +        +
Sbjct: 182 TFDAEGRPTGRIAAEQAALERGYWQLSGAKSWDLTEANPEARASLPGNLRVTS------E 235

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLET-YRSEFHKRLTQWLFPVIFGLI 288
                        +   +  L       P Y   L    + +  H+   Q  F +   L 
Sbjct: 236 LTREGIQDSFGDPSAIPIWEL-------PAYVAGLERAGFSARKHRVWMQMEFALPATLA 288

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY--IIHKIEQNPYYIPILYLF---L 343
           ++V       +R  +      + L    G F  F        + +N     +L  +   L
Sbjct: 289 AMVLVAAGFTMRHSRFGGTGRMVLLALLGGFSLFFLRNFAQVLGENGQIPILLAAWSPPL 348

Query: 344 FCISSIFLLMIK 355
             +     L++ 
Sbjct: 349 IGVMGSLGLLLH 360


>gi|145637644|ref|ZP_01793299.1| predicted permease [Haemophilus influenzae PittHH]
 gi|145269167|gb|EDK09115.1| predicted permease [Haemophilus influenzae PittHH]
          Length = 161

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 63/146 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YI + I  +   + + +V ++ +I+ +++   V   T  +   +  +G  IP  
Sbjct: 2   INTLDRYIGKSILGTIFATLMTLVGLSAIIKFVEQFRSVGKGTYDIWQAVIFTGLTIPKD 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P    +     L ++   +EL+I+ + G SR  +   V+  A+ L +F  I    
Sbjct: 62  IETFFPMAALLGALIALGNLASRSELVIMQSAGFSRFKIGIAVMKTALPLVVFTVIIGEW 121

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE 146
             P+     + + AKA    +   ++
Sbjct: 122 GIPQTEQFARDMRAKALSGGSILSIK 147


>gi|328544012|ref|YP_004304121.1| permease YjgP/YjgQ [polymorphum gilvum SL003B-26A1]
 gi|326413756|gb|ADZ70819.1| Permease YjgP/YjgQ [Polymorphum gilvum SL003B-26A1]
          Length = 363

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 10/232 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +  LY  R   ++ L   L    + ++  +L+ +       + S+  +  IS   +P +L
Sbjct: 5   TLTLYFSRRFLKAILGLFLLAAVLIFLFDVLELLRRAGERGDFSVLRITLISLLRVPLLL 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF           +++R  EL++    G S      P + +A+++ +      N +
Sbjct: 65  EQVLPFAVLFGAIWAFVTLSRALELVVARAAGISVWQFGAPAVLVALIIGLVSVTLYNPM 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE--ENLFFRLD--DDLYIKISK--YNPNNTLQGIFI 175
               +    +++A          L+    ++ R D  D   +  ++   +    L G+ I
Sbjct: 125 AVWMQERSNEVAAGIFGTEETFLLQTTNAVWIRQDGLDGESVLNAEQLLDHGERLLGVTI 184

Query: 176 VD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSY 226
               R     +   A+   +    Q   L D  V+      +     +  +Y
Sbjct: 185 FTFDRAGSFQERIEAREARLR--NQFWHLKDVIVYTTESDPQRYGTYEVSTY 234


>gi|300905894|ref|ZP_07123627.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|301304160|ref|ZP_07210276.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|300402363|gb|EFJ85901.1| hypothetical protein HMPREF9536_03886 [Escherichia coli MS 84-1]
 gi|300840573|gb|EFK68333.1| hypothetical protein HMPREF9347_02760 [Escherichia coli MS 124-1]
 gi|315256878|gb|EFU36846.1| putative permease [Escherichia coli MS 85-1]
          Length = 344

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 25/358 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y++R +   F  +   ++ +     ++  ++ VS         + +    +P  
Sbjct: 1   MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDDVSPGGYRWTQAVLVVLMTLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  ++PF   +     L  +++N+EL  I +TG S   +    L   IL ++ L   +  
Sbjct: 61  LVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALVALVAGILWTVSLGAIDEW 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           +    +    Q+ + A        +  N+ +    + ++ +   N      G+ I   RD
Sbjct: 121 VASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVTVKSLNEQGQPVGVEIFHYRD 180

Query: 181 T-QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                   YA+S +I  D+   +L+ G  H+K    K+             E+ ++    
Sbjct: 181 DLSLESYIYARSATIKDDKT-WVLH-GVNHKKWLNGKE-----------TLETLDNLAWQ 227

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
                 NL  L  P       +      Y  E      Q +  +   L+++         
Sbjct: 228 SAFTSMNLEELSMPGNTFSVRQLNHYIHYLQET----GQPILTLAMILLAVPFTFTAP-- 281

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL-----FLFCISSIFLL 352
           R       + + + +    +  +  +++         P+  L     F+    S+   
Sbjct: 282 RSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAPVTALGLPVAFVLVALSLVYW 339


>gi|302383688|ref|YP_003819511.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194316|gb|ADL01888.1| permease YjgP/YjgQ family protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 381

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 125/365 (34%), Gaps = 20/365 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNI-LLKISGYLIPT 59
           +   E Y+L  +G+S  ++   I  +  +I  ++    + S T+   + +L +     P 
Sbjct: 20  LGRIERYVLLQLGKSLAVALGVISALVMLIDFVEISRGLGSDTDLSGVRILGLMLIKSPA 79

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+  + PF F   T      +NR +EL+ +   G S    + P    A+   +       
Sbjct: 80  VIVQLLPFVFLFGTLAAFVGLNRRSELIAMRAAGVSAWRFVLPAAGAALAAGVLTVTVIG 139

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIK-ISKYNPNNTLQGI-F 174
            +        ++   +   A+     +E ++ R  +    + ++   +   N  L  + F
Sbjct: 140 PLAASGDGMFQRERGRISGAVG-GGEQEAIWLREGEGQRQMVVRAARQDRANARLLDVTF 198

Query: 175 IVDSRDTQTHKIYY----AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQT 230
            + + D +  + +     A S S+   R  ++                   ++ +  L +
Sbjct: 199 FIYATDPEGRRAFTERIDAASASLSAGRWRLV-------DAVGAQTGQRATRYSTLDLPS 251

Query: 231 ESANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
             A+       A  Q+  F   P               YR    + L+  L      +++
Sbjct: 252 SLADDEAFERFARPQSTPFWSLPGQIQRIEAAGFSSTAYRLRLQQLLSTPLAFAAMTILA 311

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISS 348
              + +   +    ++    + L  +F     FS  +   E  P +I   L   L  +++
Sbjct: 312 AAFSLRLMRLGDLARMAVAAVVLGFAFFFLNQFSAAMGSAEVVPPFIAAWLPAVLTALAA 371

Query: 349 IFLLM 353
             LL 
Sbjct: 372 FTLLF 376


>gi|312888277|ref|ZP_07747853.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299111|gb|EFQ76204.1| permease YjgP/YjgQ family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 362

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 122/328 (37%), Gaps = 13/328 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESL-NILLKISGYLIPT 59
           +K F+ YI++    +F+ +    + +  V  + ++++    +  SL  I+ +     IP 
Sbjct: 6   IKIFDWYIIKKYLGTFVFTIAIFIVVIVVFDVSEKLDNFLKNNVSLKEIIFEYYAGSIPF 65

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
            + M++P    +        M   TE++ + ++G S    ++P    A L+ I   +++ 
Sbjct: 66  YIDMLSPLINFLAVIFFTAKMANQTEIVPVLSSGASFNRFLRPYFICASLIFIVSLLADI 125

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
            + P       +++ +    +     + ++  +LD+  ++ +  ++  +     F ++  
Sbjct: 126 YLIPFTNKL--KITFENAYVVLEDPTKSDVHIKLDEHTFVYMQSFDNASKTGYQFTLEKF 183

Query: 180 DTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           D     +   A     D  ++   +   +    + + + +   + K   L    A+    
Sbjct: 184 DGDVLKQKLTANKIVYDSLKRVWSIQQFDTRYVNGLREKMVHGEKKDTVLDMVPADFVLH 243

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
               +  +   L N           ++     E +KR    +   +  LI +        
Sbjct: 244 NNIYSAMSRKELDNNIKKEEYRGTGVINDMLIEKYKRFVHPMASFVLTLIGVSL-----S 298

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYII 326
            R+ +      + L +  G F  F+YI+
Sbjct: 299 SRKVRG----GVGLPLGIGFFLCFAYIV 322


>gi|332521048|ref|ZP_08397506.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043141|gb|EGI79338.1| permease YjgP/YjgQ family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 340

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 117/350 (33%), Gaps = 16/350 (4%)

Query: 14  RSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMET 73
              L+     + +    +I + ++  +   E+L   L  + Y       ++ P    +  
Sbjct: 1   MMILLFIPIGITVHLAEKIGKILDREAPLGETLIYFLDFTIY----FAHLLFPLFLFLSV 56

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
               + +  NTE++   ++G S    ++P L  A ++++F  +    + P          
Sbjct: 57  IWFTSKLANNTEVIAFLSSGVSFTRFLRPYLIGATIVAMFSILLGLYLAPVASKGFNDFQ 116

Query: 134 AKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSG 192
            K          + N+  +++D   I +S ++P   T     +    + +      A + 
Sbjct: 117 YKYLKRKNNQA-QSNVLKQINDKEIIYVSSFDPIKKTGLNFSLEHFENNKMTYKISAANI 175

Query: 193 SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN 252
               +     L             +++I + K      E  +       A     S L  
Sbjct: 176 RYIEEDSIYRLRSYLKRNVGENEDELAIERKKDTIFSFELEDLVPEEYIAETLRYSELTR 235

Query: 253 PNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISL 312
                       +  Y+ E +++ +  +   I  +I++         ++R+    + ++ 
Sbjct: 236 FIEREEKRGSSNIGRYKLELYRKWSLPVSVFILTIIAVAV-----SSKKRRGGMGVNLAF 290

Query: 313 SISFG-VFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKK 357
            I    VF  F  I   +     + P++ ++     F I +  LL   K+
Sbjct: 291 GICIAMVFVFFDKIFGTMAAQSDFSPLIAVWFPNFIFGILAAILLYNAKR 340


>gi|288958014|ref|YP_003448355.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
 gi|288910322|dbj|BAI71811.1| hypothetical protein AZL_011730 [Azospirillum sp. B510]
          Length = 364

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 117/357 (32%), Gaps = 20/357 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R     F +  + ++ I  ++  ++ +    +    +  ++++++   +P + 
Sbjct: 6   TLSRYIGRQFIFWFCLLMVILLAIVLLLDTVELLRRAGTKPHVTFGLVVEMALLKLPEIG 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF            + R+ EL++    G S    + PV+F A  + +      N +
Sbjct: 66  QQIFPFVILFAGMFTFWRLTRSAELVVARAVGVSAWQFLMPVMFAAAAIGVVKVTLVNPV 125

Query: 122 EPKCRSTIKQLSAKA--QLALTFSYLEENLF---FRLDDDLYIKISKYNPNN-TLQG--I 173
                +   QL  +     + + +     L+       +  +I     NP    L    +
Sbjct: 126 GAVFIAKYDQLQDRYLKLQSSSLNISRSGLWLRQTNETEQFFIHAELVNPATFELSNVVV 185

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           F+ D+ D        A S  +    +   L D  ++R     + +      SYT+ TE  
Sbjct: 186 FLFDA-DQNYLARVDAPSAVLR--ERKWELQDAILNRAKKDPEKL-----DSYTIPTELD 237

Query: 234 NSS-TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            ++        +    + L    +           +R  +   L Q    +   ++   A
Sbjct: 238 MATIEESFAPPETISFWELPRFIHTLETTGFPAVRHRLHYQSLLAQPF--LFLAMVLFAA 295

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           A    L R+   +  +   +   F +F     +          I +       IS +
Sbjct: 296 AFSLRLPRRGGTMAMVTGGVLTGFVLFVMTDVVRTFGMSETIPIIMAAWSPAGISLL 352


>gi|29840522|ref|NP_829628.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
 gi|29834871|gb|AAP05506.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
          Length = 357

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 109/325 (33%), Gaps = 13/325 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       +L+++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYLTVLRLTAYQIPYLLPFILPVSCFISAFALFRGLSDNNQITFLKASGASQGII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
             P+L ++  +    F + + +   CR    +  A   +      L+     + +++   
Sbjct: 99  TFPILMVSCAICCINFYTCSELASICRFQTCKEIANMAMTSPTLLLQ--TLQKKENNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
               +   +    + I   RD +   +   ++   D+    +   D  +  K P +    
Sbjct: 157 ITVDHCAKSKFDNVIIALKRDKEIANVGIIKTIIPDVANDTVEARDVVMISKLPSTLTEQ 216

Query: 220 IMK-FKSY---TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                K Y   TL        T  L A    +    +  P     +      +  E  +R
Sbjct: 217 HSSNSKEYYIETLDEMLIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHAHLPETLRR 276

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           ++  L  +      +V    +   R+        I+L   F V      I+ K       
Sbjct: 277 ISIGLLCITLTYSGMVLGTYKPRFRKS-------ITLYCIFPVMDLILLIVGKNTTTLLP 329

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
             ++++    I+ I   +   + ++
Sbjct: 330 AFMMFIIPQVITWIVFSIRAYRESR 354


>gi|218249949|ref|YP_002375305.1| hypothetical protein BbuZS7_0837 [Borrelia burgdorferi ZS7]
 gi|226321272|ref|ZP_03796800.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi Bol26]
 gi|218165137|gb|ACK75198.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi ZS7]
 gi|226233304|gb|EEH32055.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi Bol26]
          Length = 429

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   LI P   L I+++   FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLIVPFFKLGIVIAFVSFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
            P       ++  + +  +    L+     +   DL     + + N   + +   D+   
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENG-YKNVTFFDNTGL 183

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILND 205
               +I+ A++  I  +   +  ILND
Sbjct: 184 KGFDRIFMAKNLDIRKENFQVYFILND 210


>gi|254467255|ref|ZP_05080666.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
 gi|206688163|gb|EDZ48645.1| permease YjgP/YjgQ [Rhodobacterales bacterium Y4I]
          Length = 367

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 112/340 (32%), Gaps = 15/340 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  R   + FL+ C  ++ +  +I + ++I     +   L  L+ +S   IP  L 
Sbjct: 2   KLDLYYARRFLQWFLVICAVLMTLVILIDLNEQIRRFEGAGLGLPQLVGLSLLNIPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   +  A  + +      N I 
Sbjct: 62  EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLAAAGIGVLAVTMLNPIA 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDDDL---YIKISKYNPNN---TLQGIF 174
               +  + L+           S   E L+ R         I    Y+ +    TL  + 
Sbjct: 122 AATANRYQDLAETYHNGGPSALSLSGEGLWLRQGGARGQSVIHAKGYSGDAADITLHDVS 181

Query: 175 IVDSRDTQTH-KIYYAQSGSIDLDRQAIILNDG-EVHRKSPISKDISIMKFKSYTLQTES 232
           I          +   A+S  +  D    IL +       + I+ +          L T  
Sbjct: 182 IHAYSTAGGPVRRIIAESARL--DGSNWILTNAKSWPLTAGINPEAGAASHDELQLPTTL 239

Query: 233 ANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                         +S + L       +      + Y   +   L + LF +   L+   
Sbjct: 240 TTDRIRDTLGTASGISIYDLPATIRELSAAGFTTKRYEVRYQAELARPLFLIAMVLVG-- 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           A+      R       + +++ + FG+++  ++     E 
Sbjct: 298 ASFTMRHARFGGTGLAVLMAVLLGFGLYFIRNFAQILGEN 337


>gi|222148152|ref|YP_002549109.1| hypothetical protein Avi_1542 [Agrobacterium vitis S4]
 gi|221735140|gb|ACM36103.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 362

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 119/358 (33%), Gaps = 16/358 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPT 59
           + +   Y L+    +     + +  I ++I   +     S + +S L  +  ++   +P 
Sbjct: 3   LNTLSRYFLKRYAITVFWFVIGVAAIIFLIDFSEVSGRFSDNEQSSLFGVFLLTLMRLPL 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +L    PF         L ++NR +EL+I    G S    + P L  A +L     +  N
Sbjct: 63  LLQQTVPFIALFSGMVTLITLNRRSELVIARAAGISVWQFMFPFLLGAFMLGCATSLLIN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGI 173
            +    +     L A+       S  + +          +D  I  +    + T  +Q +
Sbjct: 123 PLAALGQKQAATLEAEYSDPGKASNNKNSVPWMRQITGKEDTIIGATSVLEDGTLLMQAV 182

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           FI      +      A++  +       +L D    +     K  +  +  +     +  
Sbjct: 183 FIHFDGQGRITSRQDARTAKLQDG--YWLLKDVVETKPGETPKRETSAQVST---NLKQE 237

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                + + +      L        +Y     +   ++FH  L+     V   LI+   +
Sbjct: 238 FVQERLAQPDTVAFYELSQKIAVAKSY-GVSTKNLETQFHTLLSTPFLFVAMTLIAATVS 296

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            K +   Q + +  I   +   F ++   + ++     +    P +  ++  I +  L
Sbjct: 297 LKFSRFNQSRSV--ILGGIISGFVLYVA-TVLVKAFGSSGVVPPFVATWVPVIVATAL 351


>gi|71891829|ref|YP_277558.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795935|gb|AAZ40686.1| putative transmembrane protein, transport [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 357

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 124/355 (34%), Gaps = 5/355 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                YI++ +  S     L ++ ++ VI+++  +  +     S   ++      +P   
Sbjct: 3   NILNYYIVKTVISSTTTVFLVLLSLSSVIKLIDELRKIGEGNHSFFDVIIYMILSLPKDF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +  + E + +  +G SR+ +   V+  ++ + +   IS   I
Sbjct: 63  ELFFPIATLLGGLLGLCMLEVHNEFIAMQISGFSRLQITLSVIKASVPVLLCSIISNEWI 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-SRD 180
            P     +     ++Q   +   ++    + +D + ++ +      N L G+ + + + +
Sbjct: 123 VPNSEKIMCMYRNQSQHDASLLSIKIKNLWFIDKNDFVCVENVIAYNELLGVKLYNFNEE 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS-IMKFKSYTLQTESANSSTIV 239
            +  KI Y +        +   L +      S  +  ++  +    +  +      S ++
Sbjct: 183 RKLKKICYIERAVFV--DKVWHLINVNELDISQKTSVVNKNIPHSKWNAELTPYRLSMMI 240

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              N  ++S L +      N   +  + Y+  F K++   +   +  ++++         
Sbjct: 241 THPNFLSISKLYH-CAKYFNRIGQNSKYYQVIFWKKILSPISGSVMTIMALAFTFGPLYK 299

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           ++      +       F +      I+  I      I  +   +  +    ++M 
Sbjct: 300 KKIGIRLFVGSIAGFLFYILNQIFGILSAIHSVSPIIGSISPSIIFLVISVIIMR 354


>gi|84500988|ref|ZP_00999223.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
 gi|84391055|gb|EAQ03473.1| permease, YjgP/YjgQ family protein [Oceanicola batsensis HTCC2597]
          Length = 365

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 126/349 (36%), Gaps = 21/349 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   Y      R F+      + ++ +I + + +  +SS+  +L+ +L++     P  + 
Sbjct: 2   TLHYYFAWRFLRIFIGLLAVFLLMSMLIDVAEHLRRLSSTPATLSQVLRLVLLNAPEGIY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R +EL++    G S +  +   + +A  + +      N I 
Sbjct: 62  TILPLIMILATVALFLGLARTSELVVTRAAGRSALRSLVSPVIVAFAIGVIGVAMVNPIV 121

Query: 123 PKCRSTIKQLSAKAQL--ALTFSYLEENLFFR---LDDDLYIKISKYNPNNT-LQGI-FI 175
                    L    Q   A   S   E L+ R    +    I+ ++ NP  T L  +  I
Sbjct: 122 AATSKRYAALLESYQSGGADVLSLSAEGLWLRQGGAEGQTVIRAARSNPQATELYDVTMI 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             + D    K   A    +     A  L+D  +   +  + +      +  + +  S+ +
Sbjct: 182 AYAPDGGPEKRIEAARARLIAG--AWELHDARIWPLARGT-NPEARTERRESFEVPSSLT 238

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLET-YRSEFHK-----RLTQWLFPVIFGLIS 289
              +     +  +    P  + P Y   L E  + +  H       L + LF V   LI+
Sbjct: 239 EARIRDTFGEPSAI---PVWDMPTYIGLLTEAGFSARRHAVWFQMELAKPLFLVAMVLIA 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
             AA     VR  K    +  ++ + F +++  +++    E     + +
Sbjct: 296 --AAFTMRHVRFGKTGIAVLSAIMLGFALYYVRNFVQILGENGQIPVAL 342


>gi|195941983|ref|ZP_03087365.1| hypothetical protein Bbur8_03799 [Borrelia burgdorferi 80a]
          Length = 429

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   L+ P   L I+++   FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
            P       ++  + +  +    L+     +   DL     + + N   + +   D+   
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENG-YKNVTFFDNTGL 183

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILND 205
               +I+ A++  I  +   +  ILND
Sbjct: 184 KGFDRIFMAKNLDIRKENFQVYFILND 210


>gi|15595152|ref|NP_212941.1| hypothetical protein BB0807 [Borrelia burgdorferi B31]
 gi|221217627|ref|ZP_03589096.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 72a]
 gi|225551663|ref|ZP_03772607.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
 gi|226320854|ref|ZP_03796406.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 29805]
 gi|2688742|gb|AAC67148.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi B31]
 gi|221192573|gb|EEE18791.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 72a]
 gi|225371690|gb|EEH01116.1| conserved hypothetical integral membrane protein [Borrelia sp. SV1]
 gi|226233720|gb|EEH32449.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 29805]
          Length = 429

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   L+ P   L I+++   FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
            P       ++  + +  +    L+     +   DL     + + N   + +   D+   
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENG-YKNVTFFDNTGL 183

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILND 205
               +I+ A++  I  +   +  ILND
Sbjct: 184 KGFDRIFMAKNLDIRKENFQVYFILND 210


>gi|317153284|ref|YP_004121332.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943535|gb|ADU62586.1| permease YjgP/YjgQ family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 380

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 114/366 (31%), Gaps = 16/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     Y+++       +       I  +  +  R++    +      +L      IP +
Sbjct: 7   IGVLGRYLIQQNLYLMSICLTVGTCIYLLSDVFDRLDDFIKAGLGAETILFYFFVKIPLI 66

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P  F +     L  + R+ E+L +   G S    IK  L  A+  S+        
Sbjct: 67  VSQLMPAIFLLALVLQLGILTRSKEMLALRAGGVSFAWFIKFFLIYAMFWSLGQLAFSQF 126

Query: 121 IEPKCRSTI-KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD-- 177
           +         +      +          +L+FR    + +    Y   +    + + +  
Sbjct: 127 LGVFGEYEANRIWKEDVRKKQLDELTITDLWFRDGPFIVLAREAYPGKSRASDVVVYEFA 186

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPIS--KDISIMKFKSYTLQTESANS 235
           + + +  +I  A+   ID +   ++    +VH     +      + +F S     ++  +
Sbjct: 187 TDNQELIRILTAKKAMIDDNGWGLL----DVHELDTRTFVSVTRLSQFLSVRQNLKAYAA 242

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             +        L  L              +E  R+ +H   T+W +   F +  +     
Sbjct: 243 VELKGDTAQLPLLELSR-AIEKLEESGSNVEILRTIWH---TKWSY--AFSIAVMALLAL 296

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             +         I  SL + F V +G   +     +     P +  +L       L  ++
Sbjct: 297 ALVTFSENIYANIGFSLILIF-VQYGVHAVGATAGEQAVLPPFVAAWLGNFVMAALAGMR 355

Query: 356 KKYTKI 361
             +  +
Sbjct: 356 LAWVTV 361


>gi|216264700|ref|ZP_03436692.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 156a]
 gi|223889298|ref|ZP_03623885.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 64b]
 gi|224533066|ref|ZP_03673671.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi WI91-23]
 gi|225549397|ref|ZP_03770369.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 94a]
 gi|225550295|ref|ZP_03771254.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 118a]
 gi|215981173|gb|EEC21980.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 156a]
 gi|223885219|gb|EEF56322.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 64b]
 gi|224512002|gb|EEF82398.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi WI91-23]
 gi|225369163|gb|EEG98617.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 118a]
 gi|225370025|gb|EEG99466.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi 94a]
 gi|312147984|gb|ADQ30643.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi JD1]
 gi|312149484|gb|ADQ29555.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi N40]
          Length = 429

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   L+ P   L I+++   FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPFFKLGIVIAFVSFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD- 180
            P       ++  + +  +    L+     +   DL     + + N   + +   D+   
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENG-YKNVTFFDNTGL 183

Query: 181 TQTHKIYYAQSGSIDLDRQAI--ILND 205
               +I+ A++  I  +   +  ILND
Sbjct: 184 KGFDRIFMAKNLDIRKENFQVYFILND 210


>gi|121730751|ref|ZP_01682851.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121627676|gb|EAX60335.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 289

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 107/294 (36%), Gaps = 10/294 (3%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     L ++  ++EL+++   G S++ +   VL  AI L I + +      P+ +
Sbjct: 1   MAALLGALIGLGALASSSELVVMQAAGFSKLDIGLSVLKTAIPLMIIVTLLGEWGAPQAQ 60

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
              + + A A        +   ++ R  +D +I I+K                + +   +
Sbjct: 61  KMARDMRAFATSGGAIMSVRTGVWARDAND-FIFIAKVENEQLYGLNLWRFDENKKLSTV 119

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STIVLKAND 244
            +++      + +  ++ D  + R      +IS      Y  +T  A    + + +K  +
Sbjct: 120 IFSEQVDYVANNE-WLMKDAVLTRL-VNDIEISKESLPEYRWRTSLAPDKLAVVTVKPEE 177

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS--IVAADKRALVRQR 302
            +L+ L +   +      +    Y     +++TQ +   +  L++   +    R++    
Sbjct: 178 LSLTGLSD-YVHYLKASEQDSSRYELALWRKVTQPISIAVMMLMALSFIFGPLRSVTMGA 236

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           + +  +    +  F +   F   +  +   P     L   L  ++    L+ +K
Sbjct: 237 RILSGVIAGFT--FYISSEFFGPLSLVYGLPPLFGALAPSLVFLAIALGLLGRK 288


>gi|34763638|ref|ZP_00144567.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886691|gb|EAA23835.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 176

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 69/161 (42%), Gaps = 1/161 (0%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K  ++YI +   + FLM+ +  + +  + Q  + I  ++    +   +      L+P +
Sbjct: 2   IKKMDIYISKYFIKFFLMNIIGFMGVFLLAQTFKIIKYINQGKLAGGEIFDYIINLLPKM 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +     ++ M  N E++ +  +G   + +++  L +A ++S+ +F   N 
Sbjct: 62  FVETAPLSVLLAGLITISIMASNLEIVSLKTSGIRFLRIVRAPLIIAFVISLIVFFINNS 121

Query: 121 IEPKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIK 160
           I  K  + I      +   +L     +EN FF  + D Y+ 
Sbjct: 122 IYTKSLAKINFYRRGEVDESLKLPTTKENAFFINNTDGYLY 162


>gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254547820|gb|ACT56867.2| putative permease protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 361

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 133/363 (36%), Gaps = 28/363 (7%)

Query: 2   KSFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIP 58
                Y  +   ++   FL+  + +VF+  + +I  ++  + + + S   +L  +   +P
Sbjct: 3   GILWRYFFKYYLKTTLYFLLGAMILVFVIDLNEIQNQMGELPNYSISRGAVL--AATRVP 60

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++  + PF   +    V  ++NR +EL+I    G S   L+ P +  +ILL IF  +  
Sbjct: 61  LIIQQIIPFITLVVNIVVFFNLNRTSELVISRAIGISIWQLLNPFVVGSILLGIFTVLVI 120

Query: 119 NIIEPKCRSTIKQLSAKAQLALT---FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI 175
           N I          L  + +          +          D++I   K  P N +   F 
Sbjct: 121 NPIATSGEKIGIDLIQQWKDNGDKQKSDIIPWMQISNPQQDIFIGAKKILPENHIWEDFT 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             + D +   I+   +    +    + L     ++   I  D +        +  +    
Sbjct: 181 SITIDKKNKIIHRKDADLAIIYNDKVKLKKVVEYQYGRIPIDKNSTT---LNIPIKMDGF 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE--FHKRLTQWLFPVIFGLISIVAA 293
                +   ++   ++     + + +  +   YR+E  F+  +   L  V   LI+   +
Sbjct: 238 QKFSEQFASRSFYEII--KKMSFSNKSNIFHNYRAETQFYFLIVIPLMLVAMTLIAASVS 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFS-----YIIHKIEQNPYYIPILYLFLFCISS 348
            + +   Q +        + +++G+F GF       I+    ++   +P+    +  I +
Sbjct: 296 LEFSRSNQPR--------IIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILT 347

Query: 349 IFL 351
           I L
Sbjct: 348 ISL 350


>gi|227821475|ref|YP_002825445.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
 gi|227340474|gb|ACP24692.1| permease YjgP/YjgQ family protein [Sinorhizobium fredii NGR234]
          Length = 360

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 1   MKSFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI 57
           + +   Y  +    +   FL+    ++FI    ++  R++ +   T S    L ++ + I
Sbjct: 3   LSTLGRYFFKRYIVTTFWFLVGIFALIFIIDFSELASRMSALPHYTVSGA--LLMTTFRI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           PT+L    PF         L S+NR  EL++    G S    ++P +  A L+ +   ++
Sbjct: 61  PTILQQTVPFVALFSAMAALISLNRRYELVVTRAAGISVWQFLRPFVLGAFLVGVLAVVA 120

Query: 118 ENIIEPKCRSTIKQLSAK 135
            N +        + L A+
Sbjct: 121 LNPLAAWGTKRAEALEAE 138


>gi|289548597|ref|YP_003473585.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
 gi|289182214|gb|ADC89458.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
          Length = 351

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 113/316 (35%), Gaps = 19/316 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
            + YILR   ++F +S   ++    +   L    L+    +SL I  +     +P     
Sbjct: 2   LQRYILRLYIKAFGLSSAVLLGTGVLY--LTFETLLVFRQKSLEIFFQYILLSLPVAFLY 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELL-IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++P    +  T  L       +L  +I + G   I L++PV+F +++LSI        I 
Sbjct: 60  LSPIVSWIALTM-LIRFFIQRQLDRLIVSFGVPPIHLVRPVIFFSLVLSILHIYMSFQIY 118

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYN-PNNTLQGIFIVDS 178
           P  + ++  +  + +     + L ++ +F L D    +Y  I   +    T   +F++ +
Sbjct: 119 PSFQRSLYTIEKEYKKGKKDTLLIKDQWFALKDGEKVVYSHIGLADVSKGTAYDVFLLYT 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANSS 236
           ++        A       +  ++ + D          K      + F         +N  
Sbjct: 179 KEGSIEATLRASKAFWKGN--SLFIPDAYYEDLEKGGKFYGPMEVSF------LSLSNIR 230

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
            +  K      + L++               Y +E  +RL   L P++   I   A  KR
Sbjct: 231 PLASKLEHITFTELIS-VYGMAERLGINRYAYLAEILRRLQLSLMPLLMVTIVARALLKR 289

Query: 297 ALVRQRKKIHPIFISL 312
             + +        ++L
Sbjct: 290 RSLVEGSLYGGFSLAL 305


>gi|163788640|ref|ZP_02183085.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
           ALC-1]
 gi|159875877|gb|EDP69936.1| hypothetical protein FBALC1_10402 [Flavobacteriales bacterium
           ALC-1]
          Length = 340

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 118/342 (34%), Gaps = 7/342 (2%)

Query: 20  CLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTS 79
            L  + I   + + +++  +  +      +             ++ P    +      + 
Sbjct: 2   LLLFIPIGITVDLAEKVGKILENKAPFGEVTAYYVDFTIYFANLLFPLFLFLSVIWFTSK 61

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLA 139
           +  NTE++   ++G S    ++P L  A +++IF  +    + P       +   K    
Sbjct: 62  LANNTEIVAFLSSGVSFTRFLRPYLIGATVVAIFALVLGMYLSPMASKGFNEFKFKYLKK 121

Query: 140 LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI-YYAQSGSIDLDR 198
                   +++ +++D+ YI +S ++P +     F  +  +    K   +A++       
Sbjct: 122 NKQVQQTRDVYQQINDNDYIFVSSFSPKSKTGMKFTYEHIEGNELKYKIFAENIRYIEKD 181

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
               L            + I   + K      E  + + +   A  ++   LL+      
Sbjct: 182 STYRLTTYVKRSFENGVERIEKERSKDMHFPFELEDLTPVQYAAETKSYGELLDFIAAEK 241

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                 +  Y     K+ +  +   I  +I++      ++ R+      +   ++I+   
Sbjct: 242 RRGSPNIGRYEVVKQKKWSLPVSIFILTIIAVAV---SSVKRRGGMGVNLAFGIAIAMIY 298

Query: 319 FWGFSYIIHKIEQN--PYYIPI-LYLFLFCISSIFLLMIKKK 357
            +         EQ   P  I + L  FLF I +I+LL   K+
Sbjct: 299 VFLDKIFGVMAEQANFPAVIAVWLPNFLFGILAIYLLQNAKR 340


>gi|126739400|ref|ZP_01755093.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
 gi|126719500|gb|EBA16209.1| permease, YjgP/YjgQ family protein [Roseobacter sp. SK209-2-6]
          Length = 367

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 121/351 (34%), Gaps = 23/351 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  R   + FL+    ++ +  +I + ++I    +   S   +L ++    P  + 
Sbjct: 2   KLDLYYARRFAQWFLVITGVLMTLVVLIDLSEQIRRFDAFDLSAGQILGLTLLNAPAAMN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   + +A L+ +    + N I 
Sbjct: 62  EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVLVAALIGVLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPNNT---LQGIF 174
               +  K LS   +       S   E L+ R         +  + Y        L  + 
Sbjct: 122 AATTNRYKSLSDSYRTGGPSVLSLTGEGLWLRQGSPSGQSVVHAAGYGGGREEIILYDVT 181

Query: 175 IVDSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSP-ISKDISIMKFKSYTLQTES 232
           I+        +    A+S  ++      +L D +V   S   + +IS  + +   + T  
Sbjct: 182 ILTYGKDSGPRTRTQARSARLEGSD--WVLQDAKVWPLSAWTNPEISAGEHQELRIPTTL 239

Query: 233 ANSSTI-VLKAND----QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                   L A+D     +L   +           +    Y+ E    L +  F +   L
Sbjct: 240 TQDRIRDRLDASDGISIYDLPQTIRELAEAGFATKKHEVWYQVE----LARPFFLIAMVL 295

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
           +   AA      R       +  ++ + FG+++  ++     E     + +
Sbjct: 296 VG--AAFTMRHTRFGGTGMAVLTAVLLGFGLYFIRNFAQILGENGEIPVAL 344


>gi|254436833|ref|ZP_05050327.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
 gi|198252279|gb|EDY76593.1| putative permease, YjgP/YjgQ family [Octadecabacter antarcticus
           307]
          Length = 364

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 117/339 (34%), Gaps = 16/339 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +F  +      +  +I +++++        SL  +L++S   +P++L 
Sbjct: 2   ILHRYFARRFAWTFTATFGGFFVLMLLIDLVEQLRR-YGGEASLGDMLQLSLLKLPSLLY 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T      + R++EL++    G S +  +   L + +++        N + 
Sbjct: 61  DILPLIMVLATVATFLGLARSSELIVSRAAGRSALRALVAPLIVTVIIGAITIGVFNPLV 120

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDDD---LYIKISKYNPNNT-LQGI-FI 175
                  +      +       +  E  L+ R  DD     I+    N + T LQ + FI
Sbjct: 121 AATSKEFEARKTTLRSDAPSVLAISENGLWLRQGDDNSQTVIRAGGANLDGTQLQDVTFI 180

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             S+     +   A + ++ +   A  L D +V      ++    +     TL+  S  +
Sbjct: 181 RFSKTGHPTRRIEAATANLTIG--AWDLTDAKV-WPLVGNRVAESVATIHTTLRIPSTLT 237

Query: 236 STIVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
           +  +  +     S  +   P   +           ++      L Q  F +   LI   A
Sbjct: 238 ADEIRDSFGVPSSIAIWELPAFIDRLEVAGFSATRHQVWLQMELAQPAFLLAMVLIG--A 295

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
                  R  +    +  ++ I F +F+  ++     E 
Sbjct: 296 GFTMRHQRGGRTGVMVLAAILICFALFFLRNFAQILGEN 334


>gi|114331101|ref|YP_747323.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
 gi|114308115|gb|ABI59358.1| permease YjgP/YjgQ family protein [Nitrosomonas eutropha C91]
          Length = 352

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 117/360 (32%), Gaps = 13/360 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK    YI   +    +++ + ++ +     +L +++ V   T +       +  L+P  
Sbjct: 1   MKICYRYIALQVLTGMIIATVVLLPLFSFFDLLDQLDDVGKGTYTTRDAFLYTAMLMPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   + T   L  +  + EL+ +   G S + +    + +   L       E +
Sbjct: 61  FIQIAPFIALLGTVGALGGLAVSLELVAMRVAGFSPLMISLAPIGIGGGLITSTIALEYL 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
           + P+ +     L A A            ++ R + ++ ++I +         I  +   +
Sbjct: 121 VAPQFQQQAIVLRAVALEQSAELGKGLGIWTRNEQNI-LRIGEMLHKGRAIDIEVMHFDK 179

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ---TESANSS 236
                   +AQ   I  D+    L+D  V   +P      I   K + LQ          
Sbjct: 180 QGLMTAHIHAQYADI-FDKSMWKLHDVTVRMFAPD----RIFSRKVHALQWHSFLGPEDI 234

Query: 237 TIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             + K  +      L  +        +  + Y     +++   +  +   LI+I      
Sbjct: 235 ATLTKPPESLTPLELLHHAEFLKMTGQKADAYVMALWRKVGSVVMTIAMILIAIPFIFG- 293

Query: 297 ALVRQRKKIHPIFISL-SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             VR+      +  SL  IS  +       I  + Q    +  +      I      +++
Sbjct: 294 -SVREGLGGKLVLASLMGISIYLLDQIIANIGLVFQLNPIVVSIAPGSILIVIAAYWLLR 352


>gi|157738400|ref|YP_001491084.1| hypothetical protein Abu_2200 [Arcobacter butzleri RM4018]
 gi|157700254|gb|ABV68414.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 338

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 121/341 (35%), Gaps = 21/341 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y+   +  +F      + FI  VI +++   L +  T +   L +I  Y IP ++ 
Sbjct: 2   KLQRYLYSQLAITFFPIFFGLFFITAVIFLVKISALTAIITVNFFELFRIFSYTIPDIIF 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P  F +     L+ ++   EL +I + G +   ++K  L L +LL++ L +    + 
Sbjct: 62  YTMPISFFISMVITLSKLSSEYELTVITSFGLNPFKILKIFLPLTLLLTLLLLVVSVGLI 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           PK     KQ     +       ++   F +   D  I I+    NN  + + ++  +   
Sbjct: 122 PKSDFERKQFV-NIKKNEANFNIKSGEFGQKFGDWLIFINDK-KNNLYEDVKLLKVQKDN 179

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +  +++  +D D   +                I + + K++ +  E  N        
Sbjct: 180 DQFVI-SKNAVLDNDNGVL---------------SIRLDEGKAFLIDKEEFNQINYEAMY 223

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV--R 300
            + ++S              +     + +    LT ++    F L+S+           R
Sbjct: 224 INDSISTAKTTVFTTTYDYWKNNIKNKVDLDD-LTFFILTSFFPLMSLFLVITFGYFNPR 282

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYL 341
             K    ++  +SI        S          Y IPIL+L
Sbjct: 283 YEKNRAIMYSLISIVLYYVLIKSIGDKIFLHTLYIIPILWL 323


>gi|46199050|ref|YP_004717.1| hypothetical protein TTC0744 [Thermus thermophilus HB27]
 gi|55981077|ref|YP_144374.1| hypothetical protein TTHA1108 [Thermus thermophilus HB8]
 gi|46196674|gb|AAS81090.1| hypothetical conserved membrane spanning protein [Thermus
           thermophilus HB27]
 gi|55772490|dbj|BAD70931.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 368

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 68/212 (32%), Gaps = 7/212 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+LR      L++ LF+  +            +      L  +L+   Y +P +  
Sbjct: 2   ILHRYLLRESLPVLLLALLFLTAVYLFGFFYAGARWL--EGVPLPKILRWLSYHVPGIWV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P      T  V   +        + + G        P++ +  +LS      +  + 
Sbjct: 60  QVFPIALVTTTVLVFGRLAAEGAHFALLSAGIPLGRAALPLVAVGAVLSGLALYLQEYVV 119

Query: 123 PKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
           P+  + ++     +        +  + +   +     +    ++     + G+ I  +  
Sbjct: 120 PEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGKSLYFQDFDMAAKEMVGVRIT-AFQ 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS 212
            +     +A+ G+   + + + L D   ++  
Sbjct: 179 GEVGTFLFAERGT--WEDKTLTLKDYRYYQVD 208


>gi|254486546|ref|ZP_05099751.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
 gi|214043415|gb|EEB84053.1| permease, YjgP/YjgQ family [Roseobacter sp. GAI101]
          Length = 365

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 120/355 (33%), Gaps = 11/355 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R     F++    +  +  ++ ++++    +        L  ++    P  L 
Sbjct: 2   ILHLYFARRFVTGFVLISAVLFALLILVDMVEQARKFAEHDIGWQRLFGMTLLNTPETLN 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P    + T  +  S+ R++EL++   +G S ++ ++  +++A ++ I      N I 
Sbjct: 62  LILPLIMILATVVLFLSLARSSELVVTRASGRSALSALQAPVWVAFIIGIMAVGMLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDDD---LYIKISKYNPN-NTLQGI-FI 175
                   QLS   +       S  +E L+ R   D     I+  + N + + L  + F+
Sbjct: 122 AATAKRYIQLSESIRAGGVSTLSISDEGLWLRQGGDQGQTVIRAWRSNADASVLYDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGE-VHRKSPISKDISIMKFKSYTLQTESAN 234
             +      +   A S +++ D   +       +        +  + +  +         
Sbjct: 182 TYAAQGGPIRRIEASSAALEDDGWVLTGAKSWPLELGVNAEGNAEVFETLTLPSTLTLDR 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               +      ++ + L    +           ++      L +  F  +  ++ + +A 
Sbjct: 242 IRESITDPGVVSI-YDLPGFIHQLELAGFSPRRHKVWLQTELARPFF--LVAMVLVASAF 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                R       +  S+ + FG+++  S+     E     + +        S +
Sbjct: 299 TMRHTRFGGTGVAVLASVLLGFGLYFIRSFAQILGENGQIPVVLAAWAPPVASIL 353


>gi|115525295|ref|YP_782206.1| permease YjgP/YjgQ [Rhodopseudomonas palustris BisA53]
 gi|115519242|gb|ABJ07226.1| permease YjgP/YjgQ family protein [Rhodopseudomonas palustris
           BisA53]
          Length = 361

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 113/359 (31%), Gaps = 16/359 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y       + +   L +  +   +  +  +           ++ + S + +P +L
Sbjct: 4   NTLGRYFAGKFVTAAVGVFLGLFVLLVFVDYIDLLRRSGGRAIPALLIAQTSMFRVPQLL 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC  +       +++R  EL++    G S    + P L+ A+LL  F  +  N +
Sbjct: 64  ERLMPFCILIGAMTCYLALSRRLELVVARAAGVSAWQFMAPALWSALLLGTFATMVFNPV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF----FRLDDDLYIKISKYNPNNT-LQGIFIV 176
               +   KQ  A      + S  + + F       +    I  S        L G+ + 
Sbjct: 124 SANLQERAKQNEASMFGDSSGSLQDASGFWINQVNSEGQAIINASHSQQQGVLLTGLTVF 183

Query: 177 -DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
             + D        A+  +++     +      V R S  +  +      +  L T    +
Sbjct: 184 RFATDFSFKDRLEAREATLEPGFWRLK----SVRRYSLDAPPVEE---DTLLLPTTLTQA 236

Query: 236 STIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                 +  + +SF   P+   +          YR ++HK L +    ++  ++ + A+ 
Sbjct: 237 QVRNSFSTPETVSFWQLPSYIRSSESSGFATAGYRLQYHKLLARPF--LLAAMVMLAASV 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
                R       +   +   F ++          +    +          +  +   M
Sbjct: 295 SLRFFRFGGVQKMVLSGVGAGFLLYILSKVTEDLSKAELMHPLAAAWLPVFVGGLAGFM 353


>gi|329943108|ref|ZP_08291882.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
 gi|332287690|ref|YP_004422591.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           6BC]
 gi|313848264|emb|CBY17265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           RD1]
 gi|325506627|gb|ADZ18265.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           6BC]
 gi|328814655|gb|EGF84645.1| hypothetical protein G5Q_0787 [Chlamydophila psittaci Cal10]
 gi|328914943|gb|AEB55776.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
          Length = 357

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 105/320 (32%), Gaps = 21/320 (6%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       +L+++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYPTVLRLTAYQIPYLLPFILPISCFISAFTLFRGLSDNNQITFLKASGASQAII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
             PVL ++  +    F + + +   CR    +  A   +      L+     + + +   
Sbjct: 99  TFPVLMVSCAICCVNFYTCSELASICRFQTCKEIANMAMTSPTLLLQ--TLQKKESNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
               +   +    + I   RD +               +  +  + +++    + +    
Sbjct: 157 ITVDHCAKSKFDNVIIALKRDKEIANVGLIKTIIPDVANDTVQARGVVM----ISKLPST 212

Query: 215 SKDISIMKFKSY---TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSE 271
             D      K Y   TL        T  L A    +    +  P     +     TY  E
Sbjct: 213 LTDQRSSNSKEYYIETLDEMLIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSRTYLPE 272

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
             +R+   L  +      +V    +   R+        I+L   F V      I+ K   
Sbjct: 273 TLRRIGIGLLCITLTYSGMVLGTYKPRFRKS-------ITLYCIFPVIDLILLIVGKNTS 325

Query: 332 NPYYIPILYLFLFCISSIFL 351
           + +   +L++F   +S I  
Sbjct: 326 SLFPALMLFIFPQVVSWIVF 345


>gi|257457658|ref|ZP_05622825.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445044|gb|EEV20120.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 229

 Score = 73.8 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 3/203 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LYI++ +   F +  LF+ FI +V  IL     V S       +  +  Y +P V+
Sbjct: 7   KLLFLYIVKEMLLYFFVCFLFLFFIFFVNNILLLAEDVLSKQAPFKDVALLMLYSLPAVI 66

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF   + T   +     + E L ++  G S   L+ PVL + +L+SI  F + +++
Sbjct: 67  ANAAPFAALIGTLMGIGRFVSDLEFLSMNALGISPRFLMVPVLLVGLLVSIVSFFTNDVL 126

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P      +++      +     L    +    +   + ++    +  +  + IVD    
Sbjct: 127 LPASAVNFRRVYWDIATSTPALELA--SYSVKRNRNAVVVTGLIKDGRIHNLLIVDKNAD 184

Query: 182 QTHKIYYAQSGSID-LDRQAIIL 203
           +  +I   Q+  I+  D  +I++
Sbjct: 185 KAFRILGTQTAEIEKSDDPSIVM 207


>gi|304321347|ref|YP_003854990.1| putative permease [Parvularcula bermudensis HTCC2503]
 gi|303300249|gb|ADM09848.1| predicted permease [Parvularcula bermudensis HTCC2503]
          Length = 364

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 108/344 (31%), Gaps = 11/344 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPT 59
           M     Y+ +      L   L I  I   + +++ +  ++          L+++    P 
Sbjct: 1   MTVTFGYLAKRTLGGVLGLLLVIWLIVVSVDLIEAMRDIARIPGAGPIAALRLTLLRTPQ 60

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  ++PF F   T      M R +E+ ++   G S   LI P + LA+   + +  + +
Sbjct: 61  LILSLSPFIFLFGTLWAYGQMARMSEIAVLRAAGLSVWRLIFPPVILAVAAGLLIATTLD 120

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFR----LDDDLYIKISKYNPNN--TLQGI 173
            +  +   T + +  +A+     +    +L+ R      D + +  ++    N   L+ +
Sbjct: 121 PLAARLAETAQTVKNEARSGEEAAAKRPHLWLRQNEIGSDGIALLHAERYRENDPVLEEV 180

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
            +   R      I    +    +D Q + L        S  +    I       +  +  
Sbjct: 181 TVW-RRTQDGAFIERLDAPRALIDAQVLRLMQA-RRSTSIATTAPQIEAEIEVPVAIDLR 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
                   A+  ++  L                 +R  +H   +  L      +++   A
Sbjct: 239 LLDQDRQTADTLSVWAL-PETIRLMGDAGMTTTKFRLRYHALWSLPLKLAAMVILACAFA 297

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
                 R       + + +   F +F          E     + 
Sbjct: 298 L-GMNARGGGTALLMGMGILAGFLLFILSELSAAIAEAAIVPVG 340


>gi|163739705|ref|ZP_02147113.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
 gi|163743162|ref|ZP_02150544.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
 gi|161383579|gb|EDQ07966.1| permease, YjgP/YjgQ family protein [Phaeobacter gallaeciensis 2.10]
 gi|161386935|gb|EDQ11296.1| permease YjgP/YjgQ [Phaeobacter gallaeciensis BS107]
          Length = 367

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 122/368 (33%), Gaps = 24/368 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R   + F + C  ++ +  +I + ++I    +   SL  L  ++    P  L 
Sbjct: 2   TLDFYYARRFLQWFAVICGVLLTLVMLIDLNEQIRRFEAQDLSLGQLFGLTLLNTPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   + LA L+ +    + N I 
Sbjct: 62  EFLPLIMILTTIVLFIGLARSSELVVTRAIGRSGIRALAAPVLLAALIGVLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLDD---DLYIKISKYNPNN---TLQGIF 174
               +  + L+   +       S   E L+ R         I  + Y+ +    TL  + 
Sbjct: 122 AATSNRYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHATGYSGDTDDITLYDVT 181

Query: 175 IVDSRDTQTHKIYY-AQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFKSYT 227
           I+             A+  ++D     +I      L  G        ++  S ++  +  
Sbjct: 182 ILSYGPEGRPIRQTLAEEAALDGGDWVLIKAKVWPLIVGV--NPETNAERHSTLRLSTTL 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                 ++       +  +L   +                 + E    L + LF +   L
Sbjct: 240 TSERIRDTLGTATGISVYDLPATIRELSEAGFSTKRYEVWLQVE----LARPLFLIAMAL 295

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCI 346
           +   AA      R       +  ++ + FG+++  ++     E     + +  +      
Sbjct: 296 VG--AAFTMRHARFGGTGLAVLTAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAA 353

Query: 347 SSIFLLMI 354
             + + ++
Sbjct: 354 ILLTMGLL 361


>gi|116251334|ref|YP_767172.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255982|emb|CAK07063.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 362

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 116/360 (32%), Gaps = 22/360 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  ++ L +    + N 
Sbjct: 64  LQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMAALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I      Q      A +           L DG     + + +    +  +  ++Q  +  
Sbjct: 184 IHFDSSGQVILRQDAATAK---------LEDGYWQLNTVVERKPGEIPVRKASVQLRTNL 234

Query: 235 SSTIV---LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               V   L A +    F L+             +   ++F+  L+Q L  V    I+  
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTFIAAT 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ L
Sbjct: 295 VSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|255349244|ref|ZP_05381251.1| putative membrane transport protein [Chlamydia trachomatis 70]
 gi|255503781|ref|ZP_05382171.1| putative membrane transport protein [Chlamydia trachomatis 70s]
 gi|255507462|ref|ZP_05383101.1| putative membrane transport protein [Chlamydia trachomatis
           D(s)2923]
 gi|289525885|emb|CBJ15367.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
 gi|296435471|gb|ADH17649.1| putative membrane transport protein [Chlamydia trachomatis E/150]
 gi|296439188|gb|ADH21341.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
          Length = 354

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 117/321 (36%), Gaps = 20/321 (6%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYATVFKVTAYQIPYLLPFILPVSCFISAFTLFRKLSDNNQITFLKASGASQGMI 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           I PVL  + +L  F F + + +   CR    +  A   +      L+     + ++D   
Sbjct: 99  IFPVLIASGVLCCFNFYTCSELASICRFQTGKEIANIAMTSPALLLQ--TLQKKENDRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP---ISK 216
               +   +    + I    + +   I + ++   D+++ ++   +  V  K P    ++
Sbjct: 157 IAIDHCGKSKFDNVIIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEAR 216

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFH 273
             +  +F   TL        T  L A    +         +     +L++  R   +E  
Sbjct: 217 TSNPNEFYLETLDEFLIPKITATLFAGKSYM-----KTRTDYLPWKQLIQDARLHLAEIL 271

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +R+   L         +     +   R+   I+ +F  L++ F +       + K   +P
Sbjct: 272 RRIAIGLLCSTMTFSGLALGTYKPRFRKPVLIYALFPILNLIFLI-------VGKNTIHP 324

Query: 334 YYIPILYLFLFCISSIFLLMI 354
               +L+LF   +S +     
Sbjct: 325 ISAVMLFLFPQLLSWLIFSWR 345


>gi|86357091|ref|YP_468983.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281193|gb|ABC90256.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 362

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 114/361 (31%), Gaps = 24/361 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  +++L +    + N 
Sbjct: 64  LQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGVLTTTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQT 230
           I      +      A +  ++     +   +G V RK          + +          
Sbjct: 184 IHFDSSGRVILRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLRT------NL 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       +          L N      ++     +   ++F+  L+Q L  V   LI+ 
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTLIAA 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ 
Sbjct: 294 TVSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALA 350

Query: 351 L 351
           L
Sbjct: 351 L 351


>gi|23013662|ref|ZP_00053531.1| COG0795: Predicted permeases [Magnetospirillum magnetotacticum
           MS-1]
          Length = 312

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 100/319 (31%), Gaps = 32/319 (10%)

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
              +P +L  + PF   +        + R  EL++    G S    I PVL +A +  IF
Sbjct: 3   FLKLPQMLHTILPFAVMIGAMVCFWRLTRTHELVVARAAGISAWQFITPVLAVAGMFGIF 62

Query: 114 LFISENIIEPKCRSTIKQLSAK--AQLALTFSYLEENLFFRLDDD---LYIKISKYNPNN 168
              + N +     S  ++L  +  A  +  F   E  L+ R   D   + +         
Sbjct: 63  EITTFNPMAAAMYSRYERLQDELLAAKSSAFDISEVGLWLREPHDDGEMVVHSETVRQEG 122

Query: 169 TLQGI-----FIVDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDIS 219
            +  I     F+ D  D   ++   A++ S++      R+A ++  G+        +  +
Sbjct: 123 LVLHIRDAHFFLYDRPD-HFYQRIAAETASLEDGAFEVRRAWVMEGGKPSVFKEKMRIPT 181

Query: 220 IMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQW 279
            +          S  + +                              +R      L   
Sbjct: 182 QLTLDRIHDNFASPETLSFWQLPGFIRFFE----------RAGFTANKHRLYLQSLLASP 231

Query: 280 LFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF------WGFSYIIHKIEQNP 333
           +      L++ V + +    R    +  I   ++  F V+      +         +   
Sbjct: 232 VLYCGMVLMAAVFSLRP-NTRSGGLLARIGGGVAAGFAVYFFSKVIYALGLSATLPQTLA 290

Query: 334 YYIPILYLFLFCISSIFLL 352
            + P L+  L  +S +F L
Sbjct: 291 AWTPPLFAGLIGLSGLFHL 309


>gi|110680307|ref|YP_683314.1| YjgP/YjgQ family permease [Roseobacter denitrificans OCh 114]
 gi|109456423|gb|ABG32628.1| permease YjgP/YjgQ family, putative [Roseobacter denitrificans OCh
           114]
          Length = 365

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 117/358 (32%), Gaps = 12/358 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LY  R      L++ + +  +  ++ ++ +    +    S   + ++     P  + 
Sbjct: 2   ILHLYFARRFASWLLIAFIALSALIALVDLVDQTRRFADRGVSATGIFELVILNTPQTIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T     S+ R++EL+    +G S +  +   + + ILL      + N I 
Sbjct: 62  QILPLIVLLATVAFFLSLARSSELIATRASGRSAMGALVAPVSVVILLGTLATTTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFR---LDDDLYIKISKYNPN-NTLQGI-FI 175
                   +LS   +       S   E L+ R    D  + I+  + NP+ + L  + F+
Sbjct: 122 AATSKKYNELSQIYRTGGVSTLSISTEGLWLRQATDDGQMVIRAWRSNPDASVLFDVTFL 181

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAII-LNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
                    +  +A S  +      +  + D  + R      + +  +  +         
Sbjct: 182 AYEVIGTPVRRIHADSAELKDGAWLLRNVKDWPLARGINSEGNATEHRSLTIPSSLTVER 241

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  ++  + +      N        +R      L + LF V   LI+  +A 
Sbjct: 242 IRESFGHPSTISIWEMTD-FIKQLNQAGFSSLQHRVWLQSELARPLFLVAMVLIA--SAF 298

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSIFL 351
                R       +  ++ + F +++  S+ +   E     + +  +        +  
Sbjct: 299 TMRHTRFGGTGVAVLAAVLLGFALYFVRSFGLILGENGQLPVYLAAWAPPIASVLLAF 356


>gi|163868027|ref|YP_001609231.1| hypothetical protein Btr_0826 [Bartonella tribocorum CIP 105476]
 gi|161017678|emb|CAK01236.1| hypothetical transmembrane protein [Bartonella tribocorum CIP
           105476]
          Length = 363

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 107/359 (29%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    + S    +      +S   IP ++
Sbjct: 5   TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLPSLPHYTAKDAFLLSVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+N+  EL++  + G S    + P    A LL +F  +  N +
Sbjct: 65  QQLIPFIALFSAMTTLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNN--TLQGIF 174
                S  +++  + +     + L                  I            L   F
Sbjct: 125 AAWGFSQAEKMMTEWRNNNVLTSLHNTRIHWLTQRTDLGRTTIGAKFITDQGFSLLDATF 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +    D            ++     A  L +G +++     +  +++K K+     +   
Sbjct: 185 VQYKDDATVKNWINTPKATL--THGAWFLTNGTIYKIGHPPEKFTVLKIKT---NLKPEF 239

Query: 235 SSTIVLKANDQNLSFL--LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            +  ++         L        +  Y     + Y       +      V   LI+  A
Sbjct: 240 LTERLVNPATIPFYQLPKKIMIARSFGYSAHNFDMYLQSL---IALPALLVAMTLIA--A 294

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
                  R  +    I   +   F ++   S ++       Y  PI+  +   + ++FL
Sbjct: 295 TVSLNFTRFGQSRTLILGGVIAGFMLYVI-SVLVQAFGNAGYIPPIIAAWTPVVIALFL 352


>gi|269302797|gb|ACZ32897.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 357

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 112/325 (34%), Gaps = 13/325 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +     + +L++  Y IP +LP + P    +   ++   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYDTVLRLMAYQIPYLLPFILPGSCFVSAFSLFRKLSDNNQMTFLRASGASQSII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           + PVL ++  +    F + + +   CR    +  A   +      L+     + +++   
Sbjct: 99  MFPVLMVSGAICCLNFYTCSELASICRYQTCKEIANMAMTSPALLLQ--TLQKKENNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-- 217
               +   +    + +    + +   +   +S   D  +  +   D     K P S    
Sbjct: 157 IAVDHCAKSKFDNVIVALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTES 216

Query: 218 --ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              S  +F   TL        T  L A    L    +  P     +  L  ++  E  +R
Sbjct: 217 SSPSSQRFYIETLDELLIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRR 276

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           +      +      ++    +   R+        I+L   F +      I+ K  +N   
Sbjct: 277 VAIGFLCITLTYAGMILGIHKPRFRKS-------IALYFIFPILDLILLIVGKNTKNLPL 329

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
             +L++F   +S +       + ++
Sbjct: 330 AFMLFVFPQLVSWVVFAARAYRESR 354


>gi|327188011|gb|EGE55241.1| putative permease protein [Rhizobium etli CNPAF512]
          Length = 362

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 113/361 (31%), Gaps = 24/361 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  ++ L +    + N 
Sbjct: 64  LQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQT 230
           I      +      A +  ++     +   +G V RK          + +          
Sbjct: 184 IHFDSSGRVILRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLRT------NL 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       +          L N      ++     +   ++F+  L+Q L  V   LI+ 
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTLIAA 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ 
Sbjct: 294 TVSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALA 350

Query: 351 L 351
           L
Sbjct: 351 L 351


>gi|241203948|ref|YP_002975044.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857838|gb|ACS55505.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 362

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 117/360 (32%), Gaps = 22/360 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLVTTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGVLMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  +++L +    + N 
Sbjct: 64  LQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLVLGLLTMAALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       + T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQESGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I      Q      A +           L DG     + + +    +  +  ++Q  +  
Sbjct: 184 IHFDSSGQVILRQDAATAK---------LEDGYWQLNNVVERKPGEIPVRKASVQLRTNL 234

Query: 235 SSTIV---LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               V   L A +    F L+             +   ++F+  L+Q L  V    I+  
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTFIAAT 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ L
Sbjct: 295 VSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALAL 351


>gi|319898730|ref|YP_004158823.1| hypothetical protein BARCL_0559 [Bartonella clarridgeiae 73]
 gi|319402694|emb|CBI76240.1| conserved membrane protein of unknown function [Bartonella
           clarridgeiae 73]
          Length = 363

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 110/360 (30%), Gaps = 23/360 (6%)

Query: 3   SFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y      +    FL+    +  +    +   R+ L+     ++     IS   IP 
Sbjct: 5   TLGRYFFVLYLKKICYFLLGVFILTLLIDFTENSSRLELLP--HYTVKGAFLISLLRIPF 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF        +L S+N+  EL++  + G S    + P  F A LL +F  +  N
Sbjct: 63  IMQQLFPFIALFSAMTMLISLNQKLELVVARSIGISAWQFLMPACFGAFLLGLFSILFVN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNN--TLQG 172
            +     S  +++ A  +                          I            +  
Sbjct: 123 PLAAWSSSQAEKMIAAWRSNNIEISTSNTRIPWLTQQTNLGRTTIGAKSITHQGLSLIDA 182

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           IF+  + +         +  ++     A +L +G +++     +     KF    L+T  
Sbjct: 183 IFVQYNENATVKNWINTKKATL--TNGAWLLTNGTIYKIGQTPE-----KFTELRLKTHL 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNP-NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                    A+   + F   P               +       +   +  V   LI+  
Sbjct: 236 KPEFLTEHLADPVTIPFYKLPEKIAVARSFGYSANKFDMHLQSLIASPILLVAMTLIA-- 293

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A       R  +    I   +   F ++   S ++       Y  PI+  ++  + ++  
Sbjct: 294 ATVSLKFTRFGQSRTLILGGVIAGFILYVI-SVLVRSFGNAGYIPPIIAAWVPVVVALSF 352


>gi|225849792|ref|YP_002730026.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
 gi|225646703|gb|ACO04889.1| putative permease, YjgP/YjgQ family [Persephonella marina EX-H1]
          Length = 356

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 133/366 (36%), Gaps = 15/366 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + Y+ + +    L+      F+A + ++++ +    +    +  L     Y +P  
Sbjct: 1   MRILDRYLYKKLTVYLLVVLPSFSFVAVLAELIEVLRK--AKQLDIYYLSLYILYQLPEK 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +    +   +  + E+  I   G S  +L   +    + LS    I+  +
Sbjct: 59  VYYILPISAVIAFILLAKDLIESKEIYPILLNGISLKSLATKLFIFPLFLSFLQIINLEL 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFS---YLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           I P  +  ++++ +  +             N +  LD   Y+     + N       I  
Sbjct: 119 IMPTAKKEVEKVYSILKNRPPEEEKYLFAYNRWITLDSKSYMYFRFLDFNKREGKDLIFI 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
             D   + +   +     +  ++I++ +G++   S I    +  +FK++         + 
Sbjct: 179 QFDENYNPVLRIEGNRFKIKGRSILIQNGKIIDLSDI-FSFNYRRFKTFDFPVAVDIKNL 237

Query: 238 IVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
             L    + +S L L  +             Y S+F+ +L      +I  ++       R
Sbjct: 238 KKLVKVKKPVSILQLYRSAVIAEKFGYPAGYYWSKFYSKLATVFSALILSIVVFPFLWSR 297

Query: 297 ALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY-YIPILYLFLFCISSIFLLMIK 355
              +       +FI+ +     ++G ++I    E     YI +L++ L  +      + K
Sbjct: 298 KKDK-------LFIAFASIIVYWYGTAFIASMAESGAVPYITVLFVDLVYLMVGLFFLSK 350

Query: 356 KKYTKI 361
            +++++
Sbjct: 351 LRFSEL 356


>gi|149173512|ref|ZP_01852142.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
 gi|148847694|gb|EDL62027.1| hypothetical protein PM8797T_22248 [Planctomyces maris DSM 8797]
          Length = 388

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 133/391 (34%), Gaps = 47/391 (12%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES---------------- 45
            +F+ Y+L+     F++  +    +  V      I+   +  E                 
Sbjct: 6   TTFDRYLLKRYFHVFVIGFIATYGLYVVFDGFTNIDGFQAGAEKVSSNDLNGLEVDQNAS 65

Query: 46  ---LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
              L I+L+   Y       M++P    +    V + M R+ EL  + + G     L  P
Sbjct: 66  TSLLWIMLEFYFYQSSLFFDMISPILSVLAGVVVFSLMVRHGELNPVLSAGIPTYRLAIP 125

Query: 103 VLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEE-NLFFR--LDDDLYI 159
           +    I+++  + +++ +I P     ++        +    ++E    F    + +   +
Sbjct: 126 LAMATIIVNCVMCLNQEVIIPSIADKLQAERGDMASS--AQFVEPVYDFSTRIMINGQEV 183

Query: 160 KISK---YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK 216
            +++    N    L    + D    ++    Y            +        + +P  +
Sbjct: 184 FLTEQKMKNAEFVLSKPMVHDFVTVKSDTAIYQTPTQTRPGGWLL-------KQATPSYQ 236

Query: 217 DISIMKFKSYTLQTESANSSTIVL------KANDQNLSFLLNPNP-----NNPNYRPELL 265
           ++ I +F    +Q     +   ++      +  ++N S L++ +      NNP++    +
Sbjct: 237 ELEIAEFAREIIQPGPEPNEIFIVTDVGCDQLCNRNFSSLISTSDLIARINNPSFSDLSI 296

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
              + + H RLT+ +  +I  LISI    ++        I      +   FG+   F Y+
Sbjct: 297 RKQKLDLHSRLTRPIMNLIAVLISIPFVLRKESRSLILNIAICACVMGGLFGISQCFLYM 356

Query: 326 IHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
                 +P      +  +    ++      +
Sbjct: 357 GSTKLISPDQAA--WFPVITNGTLAAWFTNR 385


>gi|89054304|ref|YP_509755.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
 gi|88863853|gb|ABD54730.1| permease YjgP/YjgQ [Jannaschia sp. CCS1]
          Length = 364

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 116/364 (31%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              LYI R    SF +     + I   I +  ++  + S  +  + +L+++   +P  + 
Sbjct: 2   ILHLYIARRFLVSFGIVLAVFMAILLPIDMADQLRRIGSD-QGFSAVLQLALLNLPRSIT 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R +EL+++   G S +      + +A+++     +  N + 
Sbjct: 61  GLMPLFVMLATLVLFLGLARTSELVVVRAAGRSALKSAASPVIVALIIGGLSLLILNPLV 120

Query: 123 PKCRSTIKQLSAKAQ--LALTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVD 177
                      A+     + + S   E  + R         I+ S  N + T     + D
Sbjct: 121 ATTARQYDLTLARLSGLESRSVSVTGEGFWLRQGTGSEQTVIRASATNSDGT----HLFD 176

Query: 178 SR----DTQTHKIYYAQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTES 232
           +     D     +    +    L R A  L D +        + +     F + TL +  
Sbjct: 177 ASFFTFDADGALLERMDAREAVLARAAWTLTDVKRWPLAQSDNAEADAELFPTLTLPSTL 236

Query: 233 ANSSTIVLKANDQNLSFLLNPN-PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
                     N + +     P      N        +R+ F  +L+  L      LI   
Sbjct: 237 TPEQIRDSFGNPETVPIFELPGFIRQLNDAGFAALQHRTWFQMQLSSPLLLAAMVLIG-- 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN-PYYIPILYLFLFCISSIF 350
           A       R  K    +  ++ + FGV +   +     E        + +        + 
Sbjct: 295 AGFTMRHTRFGKTGVMVLGAILLGFGVVFLRRFAEVLGETGQLAASLVAWTPPIAAILLA 354

Query: 351 LLMI 354
           +  +
Sbjct: 355 IGFL 358


>gi|332088227|gb|EGI93348.1| hypothetical protein SD15574_3353 [Shigella dysenteriae 155-74]
          Length = 109

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L M+ P    +     L  M  ++E+  I   G  R    KP   
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGAVRDACTKPFFI 105


>gi|288817926|ref|YP_003432273.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
 gi|288787325|dbj|BAI69072.1| hypothetical protein HTH_0610 [Hydrogenobacter thermophilus TK-6]
 gi|308751524|gb|ADO45007.1| permease YjgP/YjgQ family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 352

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 128/364 (35%), Gaps = 24/364 (6%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+L    + F++    ++ I     + + + L      S NI +     L+P     
Sbjct: 2   LGKYVLFFYIKLFIVVNAILLGIVSSYALAELLFLFKEK--SANIAISYLLNLLPISFFY 59

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
           + PF   +    +L  +      LI+ + G S +  +  ++   + +S F  I    + P
Sbjct: 60  LLPFSAVITMMILLKHIFSKKLDLIVQSFGVSPLKFLLNIILFLVFVSFFNLIMSFDVYP 119

Query: 124 KCRSTIKQL--SAKAQLALTFSYLEENLFFRLDDDLYIKISK---YNPNNTLQGIFIVDS 178
           +    +  +    K +  +    +    FF+ +    I I+       +  + G+F+V S
Sbjct: 120 ESNKNLYSIEKEFKKRQEVEDLIVRNAWFFKEESGERIYINFQFVDIKDGNIAGVFLVKS 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
             +   ++  +  GS   D   I+L   +V      +     +  K + ++        +
Sbjct: 180 SKSNILEVIQSDRGSWKGD--IILLPIAKVWNIKEGNFVAKGISIKLFEIKNAQPIGEKV 237

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
              +  Q L           NY       Y SE  +R    L P+  G+  +  A KR  
Sbjct: 238 EHISLHQLLLLYSLGKRVGLNY-----HLYLSEIIRRFLSSLSPIAIGITVMSYAIKR-- 290

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ----NPYYIPILYLFLFCISSIFLLMI 354
               + I   F+S   +F  +W    +     +    NP Y    Y+ L  +S   L  +
Sbjct: 291 ----RSILAGFLSFVPAFFFYWFSFVLTRFFSESVSFNPLYGLFAYIPLVILSLKGLYYL 346

Query: 355 KKKY 358
            K +
Sbjct: 347 GKGF 350


>gi|99080789|ref|YP_612943.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
 gi|99037069|gb|ABF63681.1| permease YjgP/YjgQ [Ruegeria sp. TM1040]
          Length = 368

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +LY  R   + F++    ++ +  +I + ++     +       LL+++    P    
Sbjct: 2   ILDLYYARRFLQWFMVIAAVLMSLVMLIDLSEQFRRFDAQDLRFGQLLELTLLNAPAAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   M R++EL++    G S I  + P + +A++L      + N I 
Sbjct: 62  EFLPLIMILTTIVLFVGMARSSELVVTRAIGRSGIRALVPPVVVALVLGGLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLA---LTFSYLEENLFFRLD--DDLYIKISKYNPNNTLQGIFIVD 177
               +  + LS   +        S   E L+ R    +   + I   N     + +++ D
Sbjct: 122 AATTNRFETLSESYRQTGGPAAVSLSGEGLWLRQGGQNGQSV-IHAANYRGDAENLYLYD 180

Query: 178 ------SRDTQTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISIMKFKSYTLQT 230
                 + D    +   A    ++ D    +L D +V      ++ + S  ++    L T
Sbjct: 181 VSILTYAPDGGPTRRTVAAEARLEGDD--WVLRDAKVWQLILGVNPERSAKRYDELRLPT 238

Query: 231 ESANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              N          + +S + L     + +        ++      L + LF V   L+ 
Sbjct: 239 TLTNERIRDTLGYAEGISIYDLPQTIQSLSEAGFSTTRFQVWLQVELARPLFLVAMVLVG 298

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
             AA      R       +  S+ + F +++  ++    + +N     +L  +   ++SI
Sbjct: 299 --AAFTMRHTRLGGTGVAVLTSVLLGFALYFVHNF-ARILGENGQIPILLAAWAPPVASI 355

Query: 350 FLLM 353
            L M
Sbjct: 356 LLTM 359


>gi|154174950|ref|YP_001408879.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
 gi|112803667|gb|EAU01011.1| methionyl-tRNA formyltransferase [Campylobacter curvus 525.92]
          Length = 356

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 116/370 (31%), Gaps = 30/370 (8%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +  +  Y+     +SFL+    +      I +L  +  + +   S N+ L   G  + + 
Sbjct: 3   LNLYARYVGWVYLKSFLIVFFALELFYVGIDLLTNLKDLPN---SANLQLLYVGLTLLSA 59

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M R+ EL+     G S+  LI P  F+A+ ++         
Sbjct: 60  VSYVMPISLVFALIISHINMVRSNELVSFYALGVSKNGLILPPFFIALAVTFL--YVGLN 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSR 179
             P                 +FS    + F +  +  +I I + + +    + + I D  
Sbjct: 118 CTPFAY--AYDYQKSIAKNTSFSKSTTDSFLK-FEGKFIYIKELSASQKNAKDVRIFDIN 174

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV--HRKSPISKDISIMKFKSYTL-------QT 230
            T      +A       +   +   +  +         K +S+  F              
Sbjct: 175 GTDLLSTTFADGAKFKNNHWQLQDVNQTLLPKDLRLGQKGLSVQNFDELDALSGFKPKSI 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           ESAN++     +    L F+                 Y        +  + P     + +
Sbjct: 235 ESANAADGARFSIPDTLDFIFTFKNEGVELDSVKSAFY--------SLAIAPFFAPFLIL 286

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLFLFCI 346
           V      +  +   +        +   V WG  +++ +  Q+    P +  +L + L   
Sbjct: 287 VLYYHLPMTGRFFNLAFASFIFVVITLVIWGVLFVLTRFAQSSVILPEFGIVLPVILLFA 346

Query: 347 SSIFLLMIKK 356
             I+LL   +
Sbjct: 347 YGIYLLKTHR 356


>gi|291287414|ref|YP_003504230.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884574|gb|ADD68274.1| permease YjgP/YjgQ family protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 361

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 131/377 (34%), Gaps = 38/377 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI++   +  ++  +F+  I  +    Q   ++S    S   L+       P +
Sbjct: 1   MTKFNKYIIKLFVQYTVIVQVFVAIITLIANTFQHTKMLSEYNISFMTLIVYDLMKTPYL 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P    + T  V+ ++ +N EL+   + G     L  P +   I LS+ L+ S ++
Sbjct: 61  LYTTMPMTIVISTMLVMVTLLKNNELIAYVSLGGKIRNLAYPFIVSGIFLSVLLYFSADV 120

Query: 121 IEPK--------CRSTIKQLSAKAQLALTFSYLEEN-------LFFRLDDDLYIKISKYN 165
           I PK            IK  +      LT  +L+E+             +   I I++Y+
Sbjct: 121 INPKIMLERERFAYENIKNRTFNVSGKLTDMWLKESDSSFININLMDPTEKKIIGITEYH 180

Query: 166 PNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-FK 224
            NN  Q  +IV     + +       G      + +   D          + I   + F 
Sbjct: 181 LNNNFQVDYIVTYDSAEYY------EGKWIEKNKKVFAMDPVPVMTDSAEEVIQERELFD 234

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             T      +   + LK   +    +   + N   Y  +L ++Y           L  ++
Sbjct: 235 ELT-SLPVLSPKFLSLKEVRRTAEIMKKQDINTAKYYLQLYKSY--------AHALSVIV 285

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI----LY 340
             +I ++        R    I     SL   F  +W        + +   + P+    + 
Sbjct: 286 --IILVIFPLCIGFNRNHSYIAVASKSLFTGFA-YWMLMASFQSLGKTGLFSPLAANFIP 342

Query: 341 LFLFCISSIFLLMIKKK 357
           +  F I ++ L+  +++
Sbjct: 343 IGAFFILALALIYRRER 359


>gi|15605574|ref|NP_220360.1| hypothetical protein CT839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76789584|ref|YP_328670.1| permease [Chlamydia trachomatis A/HAR-13]
 gi|237803271|ref|YP_002888465.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805192|ref|YP_002889346.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311680|ref|ZP_05354250.1| putative membrane transport protein [Chlamydia trachomatis 6276]
 gi|255317981|ref|ZP_05359227.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
 gi|3329310|gb|AAC68436.1| hypothetical protein CT_839 [Chlamydia trachomatis D/UW-3/CX]
 gi|76168114|gb|AAX51122.1| predicted permease [Chlamydia trachomatis A/HAR-13]
 gi|231273492|emb|CAX10408.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274505|emb|CAX11301.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436395|gb|ADH18569.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
 gi|296437326|gb|ADH19496.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
 gi|296438254|gb|ADH20415.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
 gi|297140755|gb|ADH97513.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
 gi|297748967|gb|ADI51513.1| Predicted permease [Chlamydia trachomatis D-EC]
 gi|297749847|gb|ADI52525.1| Predicted permease [Chlamydia trachomatis D-LC]
          Length = 354

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 117/321 (36%), Gaps = 20/321 (6%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYATVFKVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMI 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           I PVL  + +L  F F + + +   CR    +  A   +      L+     + ++D   
Sbjct: 99  IFPVLIASGVLCCFNFYTCSELASICRFQTGKEIANIAMTSPALLLQ--TLQKKENDRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP---ISK 216
               +   +    + I    + +   I + ++   D+++ ++   +  V  K P    ++
Sbjct: 157 IAIDHCGKSKFDNVVIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEAR 216

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFH 273
             +  +F   TL        T  L A    +         +     +L++  R   +E  
Sbjct: 217 TSNPNEFYLETLDEFLIPKITATLFAGKSYM-----KTRTDYLPWKQLIQDARLHLAEIL 271

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +R+   L         +     +   R+   I+ +F  L++ F +       + K   +P
Sbjct: 272 RRIAIGLLCSTMTFSGLALGTYKPRFRKPVLIYALFPILNLIFLI-------VGKNTIHP 324

Query: 334 YYIPILYLFLFCISSIFLLMI 354
               +L+LF   +S +     
Sbjct: 325 ISAVMLFLFPQLLSWLIFSWR 345


>gi|332976301|gb|EGK13158.1| permease YjgP/YjgQ [Psychrobacter sp. 1501(2011)]
          Length = 455

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 1/132 (0%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K    Y+      + L + L +  +  V   L  +  + S + +    L    Y  P  L
Sbjct: 19  KIISRYVKTNALFAMLFAVLGLWALQIVFAYLAELEDI-SDSYTYFDALTYILYKSPYFL 77

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
              TP    +     L  +  N+EL+++   G S   ++  VL  A +  I        +
Sbjct: 78  EQFTPTGALLGAVIGLGLLANNSELIVMRAAGLSIYRIVSWVLQPAFIFVILALGINQYV 137

Query: 122 EPKCRSTIKQLS 133
            P+      Q+ 
Sbjct: 138 LPETNLMANQIR 149


>gi|319784424|ref|YP_004143900.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170312|gb|ADV13850.1| permease YjgP/YjgQ family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 360

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 109/377 (28%), Gaps = 52/377 (13%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   + ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVTITIWFFIGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF         L S+NR  EL+I  + G S    + P    A+L  +      N +
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVLSVGVINPL 123

Query: 122 EPKCRSTIKQLSAKAQLAL-------TFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGI 173
                S  +Q+  + +             ++ +        D  I           +  +
Sbjct: 124 AAHAFSWSEQIETQLRSGKSNTVSADAAPWIRQKT---SSGDTIIGARAILNQGLEMADV 180

Query: 174 --FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             FI+D +     +           D     L DG    +   +       F++ T+Q  
Sbjct: 181 VFFILDPQGNIVER----------KDAARAFLRDGYWELQDVKT-------FQNGTIQAS 223

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYR-----------PELLETYRSEFHKRLTQWL 280
           + +     LK   + +   L      P Y                  +  +F   +    
Sbjct: 224 ATDRVPTNLKP--EFVQERLARPETIPFYDLPGKIEVARSFGLKANAFAMQFDSLVALPF 281

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW------GFSYIIHKIEQNPY 334
             V   LI+  A       R  +    I   +   F ++        F            
Sbjct: 282 LLVAMTLIA--ATVSMRFARMGQSATMILGGIIAGFLLYVVSVLVKAFGVAGFVPTVVAA 339

Query: 335 YIPILYLFLFCISSIFL 351
           ++P++    F ++ +  
Sbjct: 340 WVPVMVAMFFGVTFLLY 356


>gi|190891135|ref|YP_001977677.1| permease [Rhizobium etli CIAT 652]
 gi|190696414|gb|ACE90499.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 362

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 113/361 (31%), Gaps = 24/361 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYVATTGWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  ++ L +    + N 
Sbjct: 64  LQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGVLTTTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQT 230
           I      +      A +  ++     +   +G V RK          + +          
Sbjct: 184 IHFDSSGRVILRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLRT------NL 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       +          L N      ++     +   ++F+  L+Q L  V   LI+ 
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTLIAA 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ 
Sbjct: 294 TVSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALA 350

Query: 351 L 351
           L
Sbjct: 351 L 351


>gi|89898056|ref|YP_515166.1| hypothetical protein CF0249 [Chlamydophila felis Fe/C-56]
 gi|89331428|dbj|BAE81021.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 357

 Score = 72.7 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 103/326 (31%), Gaps = 15/326 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       +L+++ Y IP +LP + P    +    +   ++ N ++  +  +G S   +
Sbjct: 39  IAKDVPYPTVLRLTAYQIPYLLPFILPISCFISAFTLFRGLSDNNQITFLKASGASHGII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           I P L ++  +    F + + +   CR    +  A   +      L+     + +++   
Sbjct: 99  IFPALMVSCAICCINFYTCSELASICRFQTCKEIANMAMTSPTLLLQ--TLQKKENNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHK-----IYYAQSGSIDLDRQAIILNDGEVHRKSPI 214
               +   +    + I   RD +               +  +  + +++        +  
Sbjct: 157 ITVDHCAKSKFDNVIIALKRDQEIANVGIIKTIIPDVANDTVQAKNVVMISKLPSTLTDQ 216

Query: 215 SKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
               S   +   +L        T  L A    +    +  P     +      +  E  +
Sbjct: 217 HSSNSQEYYIE-SLNEMLIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHAHLPETLR 275

Query: 275 RLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
           R+   L  +      +V    +   R+        I L   F V      I+ K   + +
Sbjct: 276 RIGIGLLCITLTYSGMVLGTYKPRFRK-------PIILYCVFPVMDLILLIVGKNTNSLF 328

Query: 335 YIPILYLFLFCISSIFLLMIKKKYTK 360
              +L++    IS I   +   +  +
Sbjct: 329 PALMLFIVPQVISWIVFAIRAYRENR 354


>gi|254477617|ref|ZP_05091003.1| permease YjgP/YjgQ [Ruegeria sp. R11]
 gi|214031860|gb|EEB72695.1| permease YjgP/YjgQ [Ruegeria sp. R11]
          Length = 367

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 125/364 (34%), Gaps = 16/364 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           + + Y  R   + F + C  ++ +  +I + ++I    +   S   L  ++    P  L 
Sbjct: 2   TLDFYYARRFLQWFAVICAVLLTLVMLIDLNEQIRRFDAQDLSFGQLFGLTLLNAPAALS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P    + T  +   + R++EL++    G S I  +   + LA  + +    + N I 
Sbjct: 62  EFLPLIMILTTIVLFVGLARSSELVVTRAIGRSGIRALAAPVVLAAFIGLLAVSTLNPIV 121

Query: 123 PKCRSTIKQLSAKAQLALTF--SYLEENLFFRLD---DDLYIKISKYN---PNNTLQGIF 174
               +  + L+   +       S   E L+ R         I    Y+    + TL G+ 
Sbjct: 122 AATSNHYRDLAETYRNGGPAALSLTGEGLWLRQGGAQGQSVIHAKGYSGDVEDVTLLGVT 181

Query: 175 IVDSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVH-RKSPISKDISIMKFKSYTLQTES 232
           I+             A+S ++  D    +L + +V    + ++ + +  +  S  L T  
Sbjct: 182 ILSYGPEGRPIRQTVARSATL--DGSDWVLTNAKVWPLVTGVNPETNATEHASLRLSTTL 239

Query: 233 ANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
            +            +S + L              + Y       L + LF +   L+   
Sbjct: 240 TSERIRDTLGTATGISVYDLPATIRELAEAGFSTKRYEVWLQVELARPLFLIAMVLVG-- 297

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIF 350
           AA      R       + +++ + FG+++  ++     E     + +  +        + 
Sbjct: 298 AAFTMRHARFGGTGLAVLMAVLLGFGLYFLRNFAQILGENGQIPVALAGWAPPVAAILLT 357

Query: 351 LLMI 354
           + ++
Sbjct: 358 MGLL 361


>gi|209548670|ref|YP_002280587.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534426|gb|ACI54361.1| permease YjgP/YjgQ family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 362

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 117/360 (32%), Gaps = 22/360 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYMVTMGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGILMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  +++L +    + N 
Sbjct: 64  LQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLILGLLTMTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQENGTKLIDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           I      Q      A +           L DG     + + +    +  +  ++Q  +  
Sbjct: 184 IHFDSSGQVILRQDAATAK---------LEDGYWQLNNVVERKPGEIPMRKASVQLRTNL 234

Query: 235 SSTIV---LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
               V   L A +    F L+             +   ++F+  L+Q L  V    I+  
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPLLLVAMTFIAAT 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            + K +   Q + +  I   +   F ++   + ++     +    P +  ++  I ++ L
Sbjct: 295 VSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPMIVALAL 351


>gi|94987323|ref|YP_595256.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731572|emb|CAJ54935.1| predicted permeases [Lawsonia intracellularis PHE/MN1-00]
          Length = 366

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 133/359 (37%), Gaps = 19/359 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++   +  L++    + +  +  + +R++    +  S  I+L    Y  P  
Sbjct: 1   MSLLFRYLIKNNTKILLLTLTIGIGVYILTDLFERLDNFIEAHTSTKIILTYFIYKTPFA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + PF F + T   L  M +  EL+ +   G S   +   ++  ++      FI    
Sbjct: 61  IAQILPFIFLISTVIQLCIMAKKKELIALQAGGISFTRIASIIIIASLFWGTIQFIFSEY 120

Query: 121 IEPK-CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI--FIVD 177
           I     R +++              + ++++F  D +  + I+   P++T  G   +++D
Sbjct: 121 IGTACGRKSLQIWQEYVHNQHKSKTILKDIWFT-DKNWIVSINTLKPDDTGSGFSAYLLD 179

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
                  KI +A S SI  +   +     +V    P      +++  + T    S     
Sbjct: 180 KNGLTIEKIIWALSFSIHNNEWILK----KVAVSEPALYSQEMLQELTLTFNQSSETLKF 235

Query: 238 IVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKR 296
           I      Q LSF  L    +        +E  ++ +H +L+     V+  L++       
Sbjct: 236 IQNNNAPQQLSFWELRETIHKLERSGSNVELLKTSWHTKLSYSFSLVVMALLA------- 288

Query: 297 ALVRQRKKIHPIFISLSISF-GVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLL 352
             +   K    I I+ S+ +  ++   + I   +       PI+  ++    I S+ + 
Sbjct: 289 TTIVAWKNNIYIAIAFSLLYTFIYNALNTIGISLGNKGIISPIIGAWIANLVIMSVTIW 347


>gi|166154183|ref|YP_001654301.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|166155058|ref|YP_001653313.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335428|ref|ZP_07223672.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
 gi|165930171|emb|CAP03655.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|165931046|emb|CAP06609.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 354

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 117/321 (36%), Gaps = 20/321 (6%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       + K++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYATVFKVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMI 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           I PVL  + +L  F F + + +   CR    +  A   +      L+     + ++D   
Sbjct: 99  IFPVLIASGVLCCFNFYTCSELASICRFQTGKAIANIAMTSPALLLQ--TLQKKENDRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP---ISK 216
               +   +    + I    + +   I + ++   D+++ ++   +  V  K P    ++
Sbjct: 157 IAIDHCGKSKFDNVIIALKHNQEISNIGFIETIIPDVNKDSVQAKNVLVISKIPLFSEAR 216

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYR---SEFH 273
             +  +F   TL        T  L A    +         +     +L++  R   +E  
Sbjct: 217 TSNPNEFYLETLDEFLIPKITATLFAGKSYM-----KTRTDYLPWKQLIQDARLHLAEIL 271

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
           +R+   L         +     +   R+   I+ +F  L++ F +       + K   +P
Sbjct: 272 RRIAIGLLCSTMTFSGLALGTYKPRFRKPVLIYALFPILNLIFLI-------VGKNTIHP 324

Query: 334 YYIPILYLFLFCISSIFLLMI 354
               +L+LF   +S +     
Sbjct: 325 ISAVMLFLFPQLLSWLIFSWR 345


>gi|157165310|ref|YP_001466458.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Campylobacter concisus
           13826]
 gi|112801662|gb|EAT99006.1| permease YjgP/YjgQ [Campylobacter concisus 13826]
          Length = 354

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 117/368 (31%), Gaps = 26/368 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y+     +SFL+  L +      I +L  +  +     S N+ L   G    + 
Sbjct: 1   MKLYARYVGWVYIKSFLIVFLALELFYVGIDLLTNLKDLP---PSANLQLLYVGLTALSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P         +  +M R+ EL+     G S+  LI P   +A  ++I  F     
Sbjct: 58  ISYVLPLSLIFALIILHVNMVRSNELISFYALGISKNKLILPPFLIAFFVTI--FYVGLN 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSR 179
             P   +              FS    + F +  +  +I I + N        + I D  
Sbjct: 116 FTPFAYAH--DYQKSIAKNTAFSKSTNDSFLK-FEGKFIYIKELNSAKQRANDVRIFDIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
            T      +A       +    +L D       P + ++    F            +   
Sbjct: 173 GTDLLSTTFADHAKFKDNE--WVLED-VNQTFLPQNLELGENGFSK---VKSENLDALRG 226

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEF----HKRLT---QWLFPVIFGLISIVA 292
            K      +  +  +  N       ++T+++E       R       + P     + ++ 
Sbjct: 227 FKPKSIESAASVENSKFNIPDAINFIKTFKNEGIGLDSARTAFYNLAITPFFAPFLLLIF 286

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
                +  +   +        +   V WG  +I+ K  Q    +P    ++ + L    +
Sbjct: 287 YYHLPVTGRFFNLALSTFIFVVITLVVWGLLFILTKFAQTSVILPEIGMVVPVILLFAYA 346

Query: 349 IFLLMIKK 356
           I+L+   +
Sbjct: 347 IYLIKSHR 354


>gi|254503227|ref|ZP_05115378.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
 gi|222439298|gb|EEE45977.1| putative permease, YjgP/YjgQ family [Labrenzia alexandrii DFL-11]
          Length = 364

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 122/359 (33%), Gaps = 19/359 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++  +Y      ++ L   LF   + ++  +L+ +   S     ++  +  IS   +P +
Sbjct: 5   RTLSVYFSGRFIKAILGLFLFAAVLLFLFDVLELVRRGSDREGFTVMRVAYISLLRVPLL 64

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V PF           +++R  EL++    G S      P + + + L IF     N 
Sbjct: 65  LEQVIPFTVLFGAIAAFVTLSRALELVVTRAAGISVWQFSTPAVLVGLFLGIFSITVYNP 124

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDL----YIKISKYNPNNT-LQGIF 174
                +   ++ +A    A     L+     +   D L     ++ S+   N T L  + 
Sbjct: 125 AAVYLQQKSEEAAAGLFGADQTFLLQSSGEVWVRQDGLDGESVLRASQLLDNGTRLLRVT 184

Query: 175 IVD-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESA 233
           +     D    +   A+   +    +   L++  V+      +  S+     Y + T   
Sbjct: 185 VFTFDEDGTFRERIEAEQARL--GNETWYLDNAIVYTTENDPQSYSV-----YQISTFLT 237

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFGLISIVA 292
            +       + +++SF   P   +      L    Y  ++   L + L  ++  +I I A
Sbjct: 238 ATEVRESIGSPESISFWNLPRFIDLARNAGLPAYRYNLQYQSLLARPL--LLIAMILIAA 295

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A    + R       I   +   F ++     +           P++  +   I  + +
Sbjct: 296 AVSLKVSRFGGLGRMILGGILSGFVLYVLTE-LAKDFGGAGIVPPLVAAWAPGIFGVLM 353


>gi|153007032|ref|YP_001381357.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030605|gb|ABS28373.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 358

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 108/363 (29%), Gaps = 15/363 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    +F+ S   +V I   +  +      +     +  +L++       V+ 
Sbjct: 2   ILFRYAARRTFAAFVGSLAGVVAIFLAVDFVDNSASFTGPGW-IPAVLELYANKTAVVVR 60

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P    +     +++  R  E   +   G     L  PV  + +L    L +  ++  
Sbjct: 61  QVAPAAMVLGAAIAVSTFRRTREYTAMRALGLGPWRLAGPVAAVTLLAGAALVVVHDVWG 120

Query: 123 PKCRSTIKQLSAKAQLALTFSYLE---ENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDS 178
            +  +  +++ A         + +      +FR  D   I  +    P      + ++ +
Sbjct: 121 VEATARAEEIRATRFSRGVRQFQQAREPKRWFRSRDGRRIYHLGASLPGGGFARVTVL-A 179

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSST 237
                       +  +  D  A +L + +     P     +     + Y         + 
Sbjct: 180 VTPDFRLAGRIDAARMRPDGDAWMLEEVQDRTFLPDGSVRLERADSRRYEFPEPPEAFAV 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +  + +      L+        +     E ++ E + R+             +  A    
Sbjct: 240 VPGRPSQLRWRTLVAQ-IAVRRHLGLATEEFQLERYDRVAYPFA--GVPGALLAVALALR 296

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF----LFCISSIFLLM 353
             R+      +  S+ +S  +FWG   +   +  +    P +  +    LF    I  + 
Sbjct: 297 RNRKGHVSAALVESVGVSL-LFWGVQGVSFALGLSGRVAPWVAAWAPNALFLALGIAAVR 355

Query: 354 IKK 356
             +
Sbjct: 356 RAR 358


>gi|162149096|ref|YP_001603557.1| hypothetical protein GDI_3326 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545161|ref|YP_002277390.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787673|emb|CAP57269.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532838|gb|ACI52775.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 369

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 117/366 (31%), Gaps = 30/366 (8%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    + +   L +  +  +   +  +  V++      ++  +I+   +P  +
Sbjct: 6   TLSFYIARQFTLAVMAMILSLTGLVSLFDFIDLLRRVATRPDVPTSLASEIALLHVPYFM 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   L  A+L+ I    + + +
Sbjct: 66  IEILPFGVLLGGIVCFWRLTRSSELIVARAAGISAWQFLTGPLSCALLIGILATGALSPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENL--FFRLDDDLY------IKISKY-NPNNTLQ- 171
                   + L      +     L +      + D  L       +           L+ 
Sbjct: 126 SSIMYRQAETLDHVYLRSGGPLNLSDGALWLRQADSGLVPHGVAILHARSVHLQGGVLRI 185

Query: 172 -GIFIVDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQ 229
            GI +    DT    +   A  G +   R+  I  D    R  P    +   +F   T  
Sbjct: 186 GGISLFRLDDTDHLIVRIEAPEGYL--GRKVWIFQDARTIR--PDRLPVPAGRFVMPT-D 240

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL---TQWLFPVIFG 286
                        +  ++  L       P +   L  +  S    RL   T    P++ G
Sbjct: 241 LTVPRVQESFASPDTLSVWAL-------PGFIALLERSGFSSIRHRLHFQTLLTLPILAG 293

Query: 287 LISIVAAD-KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            +++VAA       R+      I   ++  F +F        +  ++    P+L  +   
Sbjct: 294 TMALVAAGFSMRPTRRGGVARMIGSGVAAGFALFTISKVAA-QFGESGAMPPLLAAWAPT 352

Query: 346 ISSIFL 351
            + + L
Sbjct: 353 GAGLCL 358


>gi|188583149|ref|YP_001926594.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
 gi|179346647|gb|ACB82059.1| permease YjgP/YjgQ family protein [Methylobacterium populi BJ001]
          Length = 362

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 115/335 (34%), Gaps = 34/335 (10%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y      R+ L   L +  + + +  ++ +     S   S  ++ +++ Y  P V 
Sbjct: 6   TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDSEGASTGLMAQLALYRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P  F+A+ +      + N +
Sbjct: 66  ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN------------NT 169
                + +KQ S++ +  +     +         DL+++    +               T
Sbjct: 126 S----AALKQRSSEIEAKIFAKSTKAGT----GKDLWLRQRSVDGQAIIRAETAVEGTTT 177

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI--SKDISIMKFKSYT 227
           L G+ +    D     ++ AQ     ++     L+DG    +     ++D      + Y 
Sbjct: 178 LAGVTVFQFDDAG---VFTAQ-----IEAARATLHDGWWELRDVRVLTRDEPPESHEVYL 229

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFG 286
           + +    S         +++ F   P     + R  L    YR ++   L   L  +   
Sbjct: 230 VASTLDPSQIRQRFTPPESVPFWQLPETIARHERAGLDATRYRLQYDVLLATPLLYLAMV 289

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
           L++  A       R       +   +S  F ++  
Sbjct: 290 LVA--ATVSLRFFRFGGVGKLVLGGVSAGFVLYVA 322


>gi|58038774|ref|YP_190738.1| hypothetical protein GOX0299 [Gluconobacter oxydans 621H]
 gi|58001188|gb|AAW60082.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 396

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 114/365 (31%), Gaps = 25/365 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
            +  +YI R    S L   L +  +  +   +  +   ++      ++++KI+   +P  
Sbjct: 31  TTLAIYIARQFMLSTLSMVLALTGLVSLFDFIDLLRRAATRPNVPASLIVKIAALHVPYY 90

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V PF   +      + + R++EL++    G S    +   L  A+L  +      + 
Sbjct: 91  IIYVLPFGILLGGIVCFSRLTRSSELIVARAAGISAWQFLASPLACALLTGLLTTTGISA 150

Query: 121 IEPKCRSTIKQLSAK-AQLALTFSYLEENL--FFRLDDDLYIK---------ISKYNPNN 168
           +      + + L     +       L        + DD L            +   +   
Sbjct: 151 LSSTMFRSAEMLDQTYLRTGGGPLTLNGGALWLRQSDDGLVPHGVAILHAQDVHLIDGAL 210

Query: 169 TLQGIFIVDSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
            + G+ I    D     +   A  G++       IL+   V     + + I  M   S  
Sbjct: 211 KVSGVSIFRLDDRDRLIVRVEAPQGAL--GDHQWILHGTSVLHPDHLPQQIGDMTLPS-- 266

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFG 286
                          +  ++  L  P   +   R       +R  F   L   +      
Sbjct: 267 -DLTVGRVQESFASPDTLSVFAL--PGFISLLERSGFPSIRHRLHFQSLLALPILAGTMA 323

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L+S  A       R+      +   ++  F +F   S +  +  ++    P+L  +    
Sbjct: 324 LVS--AGFSMRPTRRGGVARMLGSGIAAGFALFTI-SKVAEQFGESGALPPVLAAWAPTG 380

Query: 347 SSIFL 351
           + + L
Sbjct: 381 AGLCL 385


>gi|296445732|ref|ZP_06887685.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
 gi|296256712|gb|EFH03786.1| permease YjgP/YjgQ family protein [Methylosinus trichosporium OB3b]
          Length = 361

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/330 (12%), Positives = 102/330 (30%), Gaps = 26/330 (7%)

Query: 3   SFELYI---LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y+         +   +   ++F+ + +++L+R   +  +    + +  ++   +P 
Sbjct: 5   TLSRYLAARFAKTILAIFATMFCLMFVVYFVELLRRAGDIPQAG--ADTVALMTILRVPA 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
               + PF            + R  EL++   +G S    + P  F+A+++ +      N
Sbjct: 63  TAETILPFAVLFGAMTTFVDLTRKLELVVARASGVSVWQFLFPPAFVALVIGVVSVTLYN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD--DDLYI-KISKYNPNNTLQGIFIV 176
            +    +    Q+  +         ++ + + RL   D   I   + Y            
Sbjct: 123 PVSAVMKQRSDQMELELFGVQGSVRVDHSKWLRLTGVDGTAILHATDYQAGG-------- 174

Query: 177 DSRDTQTHKIYYAQSG----SIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QT 230
            +R T+     Y++ G     ++  R  ++     +      +         SY L    
Sbjct: 175 -ARLTEVSVNVYSKEGLFLERVEAARARLLAGVFVLEEARVNAPGEESRTVGSYLLATDL 233

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                 T            LL       +        Y  +F   L + L  ++  ++ +
Sbjct: 234 TPEQLVTATTPPQGAPFWSLLELGEKTAD-AGLDPTGYILQFQTLLARPL--LLVAMVLV 290

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFW 320
            A+      R       +   +   F ++ 
Sbjct: 291 AASFSLRFFRMGGIARTVSGGVVAGFVLYI 320


>gi|168701113|ref|ZP_02733390.1| hypothetical protein GobsU_16419 [Gemmata obscuriglobus UQM 2246]
          Length = 410

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 5/186 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +    I   + R FL+S   +  +  V+  +Q+ + +     SL  L++    L+P++L
Sbjct: 4   TTLNRMIFWELVRVFLLSLGSLTGLVLVVMSVQQASQL---GLSLAQLVRAVPLLVPSIL 60

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           P+  P         V   +  + E++ +   G     ++KP L L +L +       +  
Sbjct: 61  PIAIPATTLFAACVVYGRLAHDNEVIALKAAGVHLFGIVKPTLLLGVLTTATTAALAHST 120

Query: 122 EPKCRSTI-KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P+ +     ++ +  +  L      +           + +        L  + +     
Sbjct: 121 IPRTQQMFWDEILSDPEEVLYNMIRRDRCLRHPSLPNVLYVRDVE-GKRLIDVVVKRRIK 179

Query: 181 TQTHKI 186
            +  + 
Sbjct: 180 EKDPRT 185


>gi|167646491|ref|YP_001684154.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
 gi|167348921|gb|ABZ71656.1| permease YjgP/YjgQ family protein [Caulobacter sp. K31]
          Length = 367

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 119/360 (33%), Gaps = 26/360 (7%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTVLP 62
            E Y+L+    S   +   +  +  +I  +     V +        LL ++    P  + 
Sbjct: 7   IERYVLKKTLGSLAAALAVVSVLVMLIAFVDISKSVGTRAEVGFGELLFLTVLQAPATIL 66

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++TPF F   T      +NR +EL+ +   G S    I P    A ++ +      N + 
Sbjct: 67  LLTPFIFLFGTLGAFVGLNRRSELIAMRAAGVSAWRFIMPAAVAAFVMGLLTLTLLNPLT 126

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD---LYIKISKYNPNN---TLQGI--F 174
               S   + S  A +        + L+ R  DD   + I+    +  N    L+G+  F
Sbjct: 127 -AAMSAQFETSRNAMMENYLKSAPKGLWLRQGDDKTQVVIRARARDQINGAVRLRGVSLF 185

Query: 175 IVDSRDT---QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--Q 229
           +   +     Q  +   A    ++     +      V    P +  I     ++YTL   
Sbjct: 186 VYAVQPNGALQFSQRIEADEARLEPGFWQLS----GVRVAMPGAGAIRS---ETYTLPSN 238

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
            +   +S          +  L              +  +R    + L   L  +   +  
Sbjct: 239 LDDRTASERFSNPQAIAVWRLPETIKRTEAAGFSSI-PFRLRLQQVLATPL--LFAAMSV 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           + AA    L+R           +++ F  F+ F+ +   + +     P +  +   I ++
Sbjct: 296 LAAAFSLRLMRLGGLAGLAGAGVTLGFAFFF-FNELCGALGKADVLTPAMAAWTPPIVAL 354


>gi|162148705|ref|YP_001603166.1| permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545528|ref|YP_002277757.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787282|emb|CAP56876.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533205|gb|ACI53142.1| permease YjgP/YjgQ family protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 377

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 111/366 (30%), Gaps = 19/366 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                Y+ R +    L +   ++ +  ++ +L+++  +    + L   L       P +L
Sbjct: 15  GVLTRYLTRELAGRILTAGAILLALMEILALLEQLTPILERHQGLRGALYFMALHAPLLL 74

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    + +  +L  M   +E+ I+   G +   L++ +L   + L +   + ++ +
Sbjct: 75  GSIFPLAVLIGSLVMLVHMTTASEIAILRAAGLTTPALVRLMLPAVLGLGLAATLIDDQV 134

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENL-FFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
            P+    + +        LT  + E    F+       + +          G+  V  RD
Sbjct: 135 TPRAELALARW-----WNLTDPHPEAGRSFWFRSGTTLVDVGYVAQGGRELGMVDVYGRD 189

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
                   A  G            D       P     +  +  +              L
Sbjct: 190 GSGRLSRVAHLGGAHYANGEWTGTDARGLTVLPSEVIPAPAEPAAEAAGPMRGLGWPAGL 249

Query: 241 KANDQNLSFLLNPNPN---------NPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           + +D     +  P            +     +     R+    R    L  ++  L++I 
Sbjct: 250 RPDDMVRLSMDTPPLAASTMVAMMRDRAPSTQPPAALRTALLGRALTPLTFMVMLLLAIP 309

Query: 292 AA--DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                 R+  R    +  +   L   F VF G    +      P     L   +    ++
Sbjct: 310 VVYIPPRSGTRSWLPVWCLGAGL--LFVVFQGLLQALGNAGSLPALAATLPGIVIFTFAV 367

Query: 350 FLLMIK 355
             LM++
Sbjct: 368 SALMLR 373


>gi|218460846|ref|ZP_03500937.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 362

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 113/361 (31%), Gaps = 24/361 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     +    IA+++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLATTAWFLIGASAIAFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  ++ L +    + N 
Sbjct: 64  LQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLTTTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQT 230
           I      +      A +  ++     +   +G V RK          + +          
Sbjct: 184 IHFDSSGRVIMRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLRT------NL 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       +          L N      ++     +   ++F+  L+Q L  V   LI+ 
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTLIAA 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
             + K +   Q + +  I   +   F ++   + ++     +    P +  ++  + ++ 
Sbjct: 294 TVSLKFSRFNQSRSV--ILGGILSGFMLYVI-TVLVKAFGSSGVVPPFVATWIPVVVALA 350

Query: 351 L 351
           L
Sbjct: 351 L 351


>gi|15618904|ref|NP_225190.1| hypothetical protein CPn0996 [Chlamydophila pneumoniae CWL029]
 gi|15836527|ref|NP_301051.1| hypothetical protein CPj0996 [Chlamydophila pneumoniae J138]
 gi|16752031|ref|NP_445397.1| hypothetical protein CP0859 [Chlamydophila pneumoniae AR39]
 gi|4377325|gb|AAD19133.1| CT839 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|7189771|gb|AAF38648.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979369|dbj|BAA99203.1| CT839 hypothetical protein [Chlamydophila pneumoniae J138]
          Length = 357

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 111/325 (34%), Gaps = 13/325 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +     + +L++  Y IP +LP + P    +   ++   ++ N  +  +  +G S+  +
Sbjct: 39  IAKDVPYDTVLRLMAYQIPYLLPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           + PVL ++  +    F + + +   CR    +  A   +      L+     + +++   
Sbjct: 99  MFPVLMVSGAICCLNFYTCSELASICRYQTCKEIANMAMTSPALLLQ--TLQKKENNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-- 217
               +   +    + +    + +   +   +S   D  +  +   D     K P S    
Sbjct: 157 IAVDHCAKSKFDNVIVALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTES 216

Query: 218 --ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              S  +F   TL        T  L A    L    +  P     +  L  ++  E  +R
Sbjct: 217 SSPSSQRFYIETLDELLIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHSHLPETLRR 276

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           +      +      ++    +   R+        I+L   F +      I+ K  +N   
Sbjct: 277 VAIGFLCITLTYAGMILGIHKPRFRKS-------IALYFIFPILDLILLIVGKNTKNLPL 329

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
             +L++F   +S +       + ++
Sbjct: 330 AFMLFVFPQLVSWVVFAARAYRESR 354


>gi|46198338|ref|YP_004005.1| hypothetical protein TTC0030 [Thermus thermophilus HB27]
 gi|46195960|gb|AAS80378.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
          Length = 336

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 117/352 (33%), Gaps = 30/352 (8%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+       +     +     ++ S       +  +  Y +P  L +
Sbjct: 2   LGRYVLREVLVPYLVGVFLFAALLTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G   + L++P++ LA+ +S+   ++   + P
Sbjct: 62  ALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELRP 121

Query: 124 KCRSTIKQLSAKAQL--ALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIFIVDS 178
           + +    +L  +           L   ++      +Y    +  P    N L+G+ +VD 
Sbjct: 122 RSQEAYDRLLGRILYGEGGASGVLRRQVYAPPGLGVYF-AEEVYPEPEGNRLRGVRVVDE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R     ++Y A+ G  D +   +    G V     +     ++ F +          S  
Sbjct: 181 R----GRVYSAEEGLWDEEGWRL---KGYVVEGEEVRPFEGVLPFPA----RFRPKESLG 229

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D      L         R ++    R  FH+RL   L     G + + AA     
Sbjct: 230 SRDPYDSTPLEELW-------ARAQVEPEARFAFHRRLADAL-----GGLVLGAAAAALG 277

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  R+        + + FG +  ++        +   + + YL      ++ 
Sbjct: 278 LSLREAAWAFLGVVLLIFGYYVLWTLAAQLARYDVSPL-LAYLPDLFYGALA 328


>gi|268679754|ref|YP_003304185.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617785|gb|ACZ12150.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 341

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 108/324 (33%), Gaps = 15/324 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+L+  G  F      + FI  ++  ++   L +    +   L  +  YL+P  
Sbjct: 1   MNRTSRYLLKHFGALFSSLFFILFFITSIVFFIKITALTAIIQMNFLELGTLYIYLLPRT 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P  F +     L ++++  E +++   G +   + +  L LA  LS+ L ++  +
Sbjct: 61  LVYTLPITFFIALCITLFNLSKENETIVLFTLGYNPQKIARLFLLLATGLSLLLILNIFV 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +       + A     ++ + F +      + I K +      G+ +     
Sbjct: 121 LIPIS-KELNSNFIDYKKAEAKFNIKASEFGQKFSQWLVYIEKSDDQKHFSGVTLYQVPT 179

Query: 181 TQTH-KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIV 239
                ++  A +  I+     + LN  E         +I  + F+   + ++       +
Sbjct: 180 PNEDERLILANNALIENTDGKLRLNLEEGKIFEFKKNEIEQINFERMHINSQPKAGIGTI 239

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
               +      +N                  E    L   LFP+   LI++         
Sbjct: 240 QSVKEYWNGVFVNSKRAY-------------ELAFFLLIALFPLASTLIALSIGIVTYRY 286

Query: 300 RQRKKIHPIFISLSISFGVFWGFS 323
            +      +F ++ I F     FS
Sbjct: 287 NKGGIYIAMFATIFIYFAAATLFS 310


>gi|260576762|ref|ZP_05844747.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
 gi|259021014|gb|EEW24325.1| permease YjgP/YjgQ family protein [Rhodobacter sp. SW2]
          Length = 364

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 112/359 (31%), Gaps = 18/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  LYI R      L   L    I  +I  L ++  +S    SL     ++   +P+ L 
Sbjct: 2   TLSLYIARRFVWLLLGIILGFATILLLIDSLDQLRRLSGQGISLGQATLLAAMNMPSSLY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +   + R++EL+++  +G S +  +   +  A+L         N + 
Sbjct: 62  RILPLLMILAAITLFMGLARSSELVVVRASGRSGLRFLATPVLAALLFGAVAVAVLNPLV 121

Query: 123 PKCRSTIKQLSAKAQLA--LTFSYLEENLFFR---LDDDLYIKISKYNPNNT-LQGIFIV 176
                    L +K         S  ++ L+ R    D    I  ++ N + T L  +  +
Sbjct: 122 AATLKRYDTLLSKYAQDGESVLSINDDGLWLRQGGPDGQTVIHAARANADGTELFSVTFL 181

Query: 177 DSRDTQTHKIYY-AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                        A+   +     A++         +      +                
Sbjct: 182 SFDAAGLPSARTEAREARLGDGAWALVDAKTWPLNLANPEASAARETGTRLPSDLTRDAI 241

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLET-YRSEFHKRLTQ---WLFPVIFGLISIV 291
                     ++  L       P+Y   L    + +  H+   Q    L  ++  ++ I 
Sbjct: 242 RDSFGTPAAISIWNL-------PSYIAGLERAGFSARSHRVWLQTELALPLLLAAMVLIA 294

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           A       R  K    + ++L   FG+F+  ++     E     I +        + +F
Sbjct: 295 AGFTMRPTRSGKTGTYVLLALLGGFGIFFLRNFAQVLGENGQIPIAMAAWSPPAAAVLF 353


>gi|15834847|ref|NP_296606.1| hypothetical protein TC0227 [Chlamydia muridarum Nigg]
 gi|270285013|ref|ZP_06194407.1| hypothetical protein CmurN_01133 [Chlamydia muridarum Nigg]
 gi|270289036|ref|ZP_06195338.1| hypothetical protein CmurW_01188 [Chlamydia muridarum Weiss]
 gi|301336411|ref|ZP_07224613.1| hypothetical protein CmurM_01210 [Chlamydia muridarum MopnTet14]
 gi|7190266|gb|AAF39099.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 354

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 116/318 (36%), Gaps = 14/318 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       + +++ Y IP +LP + P    +    +   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYATVFRVTAYQIPYLLPFILPASCFISAFTLFRKLSDNNQITFLKASGASQGMI 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           I P+L  + +L  F F + + +   CR    +  A   +      L+     + ++D   
Sbjct: 99  IFPILITSGILCCFNFYTCSELASICRFQTGKEIANIAMTSPALLLQ--TLQKKENDRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP---ISK 216
               +   +    + I    + +   I + ++   D+++ ++   +  V  K P    ++
Sbjct: 157 IAIDHCGKSKFDNVIIALKHNQEISNIGFVETIIPDVNKDSVQAKNVLVISKVPLFSEAR 216

Query: 217 DISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
             +  +F   TL        T  L A    +    +  P     +   +  + +E  +R+
Sbjct: 217 TSNPNEFYLETLDELFIPKITATLFAGKSYMKARTDYLPWKQLIQD--VHLHLAEILRRV 274

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
              L         +     +   R+   I+ +F  L++ F +       + K   +P   
Sbjct: 275 AIGLLCSTMTFSGLALGTYKPRFRKPVLIYVLFPVLNLIFLI-------VGKNTTHPISA 327

Query: 337 PILYLFLFCISSIFLLMI 354
            +L+LF   +S +     
Sbjct: 328 LMLFLFPQLLSWLIFSWR 345


>gi|171059278|ref|YP_001791627.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
 gi|170776723|gb|ACB34862.1| permease YjgP/YjgQ family protein [Leptothrix cholodnii SP-6]
          Length = 368

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 117/373 (31%), Gaps = 21/373 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M +    + R I  +     +  + + + I  +  +  +                 +P  
Sbjct: 1   MHTIRRLLYREILGATGYVMVAFLGLFFFIDFMAELENIGQHGYGAAQAALACLLQVPGH 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P    +     L  +  ++E  I+   G      +  + +L +  +   F+  + 
Sbjct: 61  VYELAPIAVLIGAIYALARLAHSSEFTILRTGGLGPGLALLLLTWLGLGFAAITFVIGDF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTF----SYLEENLFFRLDDD---LYIKISKYNPNNTLQGI 173
           + P C +    L A+A   L+     ++L+++      D      +  +    +  L+ +
Sbjct: 121 VAPWCDTQATLLQARASGNLSVASGGAWLKDS--ASAADGEHRYTVNFAAARSDGELEKV 178

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV-HRKSPISKDISI-MKFKSYTLQTE 231
            I +               ++  D     L D  + H  S  +  +    K  S+  Q+ 
Sbjct: 179 RIFEFGPKGALITRTTAERAVIGDDGTWQLTDVRISHWTSDHTPRLDADEKLASHVWQSG 238

Query: 232 SANS--STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
              +  +  VL     +   L N    +     +  + Y  +F K+       ++  ++ 
Sbjct: 239 LTRNVVAAAVLPLRTMSTLALYN-YMTHLADHEQAAQRYEIQFWKKALYPFACLV--MMG 295

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFW---GFSYIIHKIEQNPYYIPILY--LFLF 344
           +         R       +F  + +  G        S++       P+        +FL 
Sbjct: 296 LALPFAYLHGRSGGIGLMVFGGIMLGIGFVLLNNLSSHLGLLQNWTPWLAASAPSAIFLL 355

Query: 345 CISSIFLLMIKKK 357
              + F  +++ +
Sbjct: 356 LSLAAFSWLVRYR 368


>gi|49475338|ref|YP_033379.1| hypothetical protein BH05440 [Bartonella henselae str. Houston-1]
 gi|49238144|emb|CAF27352.1| Hypothetical transmembrane protein [Bartonella henselae str.
           Houston-1]
          Length = 365

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 112/363 (30%), Gaps = 27/363 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    +SS    +      IS   IP ++
Sbjct: 5   TLGQYFFIRYLKMTCYFLGGIFVLALLIDFTENSGRLSSLPRYTAKDAFLISVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+NR +EL++  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLIPFIALFSAMAMLISLNRKSELVVTRSIGISAWQFLMPACFGAFLFGLFSILLVNPL 124

Query: 122 EPKCRSTIKQLSAK--AQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNN--TLQG 172
                S  +++  +  ++     + L                  I            +  
Sbjct: 125 AAWGFSQAERMMTEWRSKNNNVLTSLHNTRILWLTQRTHSGRTTIGAKSITDQGLSLIDA 184

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F+  + +        ++  ++     A +L DG +++     +     KF    +QT  
Sbjct: 185 TFVQYNDNATIKNWINSRKATLING--AWLLTDGTIYKIGHPPE-----KFSELQIQTTL 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLI 288
                     N   + F   P       +  Y     + Y       +      +   LI
Sbjct: 238 KPEFLTERLVNPATIPFYQLPTKIMIARSFGYSANNFDMYLQSL---IALPALLIAMTLI 294

Query: 289 SIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           +  A       R  +    I   +   F ++   S ++       Y  PI+  +     +
Sbjct: 295 A--AVVSLNFTRFGQSKILILGGVIAGFSLYVI-SILVQAFGNAGYIPPIIAAWTPVFIA 351

Query: 349 IFL 351
           +FL
Sbjct: 352 LFL 354


>gi|13476525|ref|NP_108095.1| hypothetical protein mll7865 [Mesorhizobium loti MAFF303099]
 gi|14027286|dbj|BAB54240.1| mll7865 [Mesorhizobium loti MAFF303099]
          Length = 360

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/376 (13%), Positives = 107/376 (28%), Gaps = 50/376 (13%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   L ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVTITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAVAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF         L S+NR  EL+I  + G S    + P    A+L         N +
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGFVSVGLINPL 123

Query: 122 EPKCRSTIKQLSAKAQLAL-------TFSYLEENLFFRLDDDLYIKISKYNPNN-TLQG- 172
                S  +Q+  + +             ++ +        D  I           +   
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKT---STGDTIIGARAILNQGLEMSDA 180

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
           +F V  +     +   A             L DG    +   +       F++ T+Q  +
Sbjct: 181 VFFVLDQQGNIVERKDAAHAY---------LRDGYWELQDVKT-------FRNGTIQPSA 224

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYR-----------PELLETYRSEFHKRLTQWLF 281
           ++     LK   + +   L      P Y                  +  +F   +     
Sbjct: 225 SDRVPTNLKP--EFVQERLARPETIPFYDLPGKIEVARSFGLKANAFAMQFDSLVALPFL 282

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW------GFSYIIHKIEQNPYY 335
            V   LI+  A       R  +    I   +   F ++        F            +
Sbjct: 283 LVAMTLIA--ATVSMRFARMGQSATMILGGVVAGFLLYVVSVLVKAFGVAGFVPTAIAAW 340

Query: 336 IPILYLFLFCISSIFL 351
           +P++    F ++ +  
Sbjct: 341 VPVVVAMFFGVTFLLY 356


>gi|33242365|ref|NP_877306.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
 gi|33236876|gb|AAP98963.1| hypothetical protein CpB1034 [Chlamydophila pneumoniae TW-183]
          Length = 357

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 110/325 (33%), Gaps = 13/325 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +     + +L++  Y IP +LP + P    +   ++   ++ N  +  +  +G S+  +
Sbjct: 39  IAKDVPYDTVLRLMAYQIPYLLPFILPGSCFVSAFSLFRKLSDNNHMTFLRASGASQSII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
           + PVL ++  +    F + + +   CR    +  A   +      L+     + +++   
Sbjct: 99  MFPVLMVSGAICCLNFYTCSELASICRYQTCKEIANMAMTSPALLLQ--TLQKKENNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-- 217
               +   +    + +    + +   +   +S   D  +  +   D     K P S    
Sbjct: 157 IAVDHCAKSKFDNVIVALKGNNEISHVGIIKSIIPDTTKDTVKAKDVVFISKLPDSLTES 216

Query: 218 --ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
              S  +F   TL        T  L A    L    +  P     +  L   +  E  +R
Sbjct: 217 SSPSSQRFYIETLDELLIPKITSTLFAGKSYLKTRTDYLPWKQLVKQSLKHPHLPETLRR 276

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           +      +      ++    +   R+        I+L   F +      I+ K  +N   
Sbjct: 277 VAIGFLCITLTYAGMILGIHKPRFRKS-------IALYFIFPILDLILLIVGKNTKNLPL 329

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
             +L++F   +S +       + ++
Sbjct: 330 AFMLFVFPQLVSWVVFAARAYRESR 354


>gi|226946454|ref|YP_002801527.1| YjgP/YjgQ family permease [Azotobacter vinelandii DJ]
 gi|226721381|gb|ACO80552.1| permease YjgP/YjgQ family [Azotobacter vinelandii DJ]
          Length = 356

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 117/359 (32%), Gaps = 14/359 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  E Y+L  +   F  +   ++ +   + ++  ++ +  +   L   L+++   +P  
Sbjct: 1   MRILERYLLGNLLLGFAAAAALLLPLFSTLDLVGELDDIGDAGYRLGQALQVTLMTLPRR 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + PF   +     L  ++ + EL ++   G S   +    L    LL+  L   +  
Sbjct: 61  AVELGPFIALLGGIAALGQLSMSQELSVLRTAGVSATRIGLTALLAGTLLAGGLGALDEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ--GIFIVDS 178
           +    +    +L A A+        +++  +   D   ++I             IF  D 
Sbjct: 121 VASPLQQKAIKLRAYAKPDND----KDDSIWARKDGQVVRIGSLATGRVPNHLEIFRFDE 176

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            + +  +   A    I        L+D  + R S   + +  ++   +      +    +
Sbjct: 177 SN-RLQEYILADRAEIQPGG-LWQLHDVRLKRWSDEGESVERLERLEWRAILPDSRLDEV 234

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
            L     +   L     +      +    +     ++L   +  +   L ++        
Sbjct: 235 TLPPASLSARQLRG-YVHFLQNTGQPSIQFEIALWQKLGVPILTLAMILFALPFTFAP-- 291

Query: 299 VRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
           VR       + +   +   V+ G      +   ++ N   + +L   +    ++ L+  
Sbjct: 292 VRSTGLGSRLALGAVMGLLVYIGNESLVSLGQLLKLNAMLVGLLPALVLLGMALALVRR 350


>gi|167947877|ref|ZP_02534951.1| hypothetical protein Epers_15577 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 109

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 80  MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC-RSTIKQLSAKAQL 138
           M+R++E++ +   G     + +P+L  A+ +++ +     ++EP   R   + ++A+   
Sbjct: 1   MHRDSEMIALQACGVGGWRVFRPILMAAVPMALLVAWLSMVVEPWGTRLKAEIIAAQKGQ 60

Query: 139 ALTFSYLEENLFFR-LDDDLYIKISKYNPN 167
                 +    F      +L   +  ++ +
Sbjct: 61  TSALPGVSPGRFNEYSRGNLVFYVESFSAD 90


>gi|149201834|ref|ZP_01878808.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
 gi|149144882|gb|EDM32911.1| permease, YjgP/YjgQ family protein [Roseovarius sp. TM1035]
          Length = 378

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 128/359 (35%), Gaps = 18/359 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  R    SF+   + ++ I  +I ++  +        +   +L I    +P    
Sbjct: 17  ILERYFGRRFFVSFMGVTITMLVIMGLIDLMDELGDFPE--LAFGQVLGIVLLKLPEAYY 74

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  +   + R++E++++  +G S +  +     +A+ + +      N + 
Sbjct: 75  EIIPLVMILASVALFLRLARSSEMVVLRASGRSALRGLLAPAAVALAIGLLGLAVGNPLV 134

Query: 123 PKCRSTIKQLS--AKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPN-NTLQGIFIV 176
                    L      Q     +   E L+ R         I  ++ + + +TL G    
Sbjct: 135 AATAKRHHDLVNTYSGQTYSDLAIASEGLWLRQGGTAGQTVIYAARSSSDLSTLYGPSFY 194

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
           D + D Q  +   A +  ++    A +L D ++   +  + +   M  +   L   S  +
Sbjct: 195 DFAPDGQPLRRISASTARLETG--AWLLEDAKIWDLA-ENINPEAMARQEAQLSVPSDLT 251

Query: 236 STIVLKANDQNLSFLLNPNP---NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +L +        +   P   +           Y   F   L Q +F  +  L+ I A
Sbjct: 252 QDRILDSFGSPEYIPIWELPKFIDQLEEAGFSARRYAIWFQSELAQPVF--LVALVLISA 309

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A      R       +  ++ + FG+ +  ++  H + +N     +L  +   ++S+F+
Sbjct: 310 ALTMGHTRGANVGLSVLTAVLLGFGLHYVRNF-AHILGENGQLPILLAAWAPPVASLFI 367


>gi|163853055|ref|YP_001641098.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218531865|ref|YP_002422681.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|240140388|ref|YP_002964867.1| putative permease [Methylobacterium extorquens AM1]
 gi|254562992|ref|YP_003070087.1| permease [Methylobacterium extorquens DM4]
 gi|163664660|gb|ABY32027.1| permease YjgP/YjgQ family protein [Methylobacterium extorquens PA1]
 gi|218524168|gb|ACK84753.1| permease YjgP/YjgQ family protein [Methylobacterium
           chloromethanicum CM4]
 gi|240010364|gb|ACS41590.1| putative permease [Methylobacterium extorquens AM1]
 gi|254270270|emb|CAX26266.1| putative permease [Methylobacterium extorquens DM4]
          Length = 362

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 114/327 (34%), Gaps = 18/327 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   Y      R+ L   L +  + + +  ++ +     +   S  ++ +++ Y  P V 
Sbjct: 6   TLGRYFAWRFVRTILGVFLTVFALVYTLDFVELLRRAGDAEGASPGLMAQLALYRTPAVA 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             V PF     +   L  ++R  EL++    G S    ++P  F+A+ +      + N +
Sbjct: 66  ESVLPFAVLFGSMAALLQLSRKLELVVARAAGISAWQFLQPGAFVALAIGALAIGAYNPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
                + +KQ S++ +  +     +         DL+++    +    ++    V+   T
Sbjct: 126 S----AALKQRSSEIEAKIFAKSTKAGT----GKDLWLRQRSIDGQAIIRAETAVEGTTT 177

Query: 182 QTHKIYY----AQSGSIDLDRQAIILNDGEVHRKSPI--SKDISIMKFKSYTLQTESANS 235
                 +    A + +  L+     L+DG    +     ++D      + Y + +    S
Sbjct: 178 LAGVTVFQFDEAGAFAAQLEAARATLHDGWWELRDVRVLTRDEPPESHEVYLVASTLDPS 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPEL-LETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                    +++ F   P     + R  L    YR ++   L   L  +   L++  A  
Sbjct: 238 QIRQRFTPPESVPFWQLPETIARHERAGLDATRYRLQYDVLLATPLLYLAMVLVA--ATV 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWG 321
                R       +   +S  F ++  
Sbjct: 296 SLRFFRFGGVGKLVLGGVSAGFVLYVA 322


>gi|240850231|ref|YP_002971624.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
 gi|240267354|gb|ACS50942.1| putative permease, YjgP/YjgQ family [Bartonella grahamii as4aup]
          Length = 363

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 111/361 (30%), Gaps = 25/361 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +        I  +A +I   +    +SS    +      +S   IP ++
Sbjct: 5   TLGRYFFIRYLKITCYFWGSIFVLALLIDFTENSGRLSSIPHHTAKDAFFLSVLRIPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+N+  EL++  + G S    + P    A LL +F  +  N +
Sbjct: 65  QQLIPFIALFSAMATLISLNKKLELVVTRSIGVSAWQFLMPACLGAFLLGLFSILLINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISKYNPNN--TLQGIF 174
                S  ++   + +     + L                  I            L   F
Sbjct: 125 AAWGFSQAEKKMTEWRNNNVLTPLHNTDIHWLTQRTNLGRTTIGAKFITDQGLSLLDATF 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +  + +            ++     + +L +G +++     +  ++++     ++T    
Sbjct: 185 VQYNDNATVKNWINTPKATL--TNGSWLLTNGTIYKIGHPPEKFTVLQ-----IKTNLKP 237

Query: 235 SSTIVLKANDQNLSFLLNPNP----NNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                  AN   + F   P       +  Y     + Y   F   +      V   LI+ 
Sbjct: 238 EFLTERLANPATIPFYQLPKKIMIARSFGYSANNFDMY---FQSLIALPALLVAMTLIA- 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
            A       R  +    I   +   F ++   S ++       Y  PI+  +   + ++F
Sbjct: 294 -ATVSLNFTRFGQSRTLILGGVIAGFMLYVI-SVLVQAFGNAGYIPPIIAAWTPVVIALF 351

Query: 351 L 351
           L
Sbjct: 352 L 352


>gi|320449377|ref|YP_004201473.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
 gi|320149546|gb|ADW20924.1| putative permease, YjgP/YjgQ family [Thermus scotoductus SA-01]
          Length = 368

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 5/201 (2%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   ++L+      L++ LF+  +            +      L  + +   Y +P VL 
Sbjct: 2   TLYRHLLKESLPVLLLALLFLTAVYLFGFFYAGARWL--EGVPLWKVARWLSYHVPGVLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            V P      T  V   ++       + + G        P++ +  LLS      +  + 
Sbjct: 60  QVFPIALVTTTVLVFGRLSAEGAQFALLSGGVPLWRAALPLVGIGALLSGVALYLQERLV 119

Query: 123 PKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
           P     ++     +        +  + L   +     +    ++     + G+ I   + 
Sbjct: 120 PHYNEKVRVAWWDEIHTQGAGLFRLKGLQIPIGKGRNLYFEDFDMEKKEMVGVRIASFQ- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAI 201
            +     +A+ GS +  R  +
Sbjct: 179 GEEGTFLFAERGSWEDKRITL 199


>gi|87306338|ref|ZP_01088485.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
           3645]
 gi|87290517|gb|EAQ82404.1| hypothetical protein DSM3645_08402 [Blastopirellula marina DSM
           3645]
          Length = 379

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 5/136 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-----SLNILLKISGY 55
           M   + Y+L    +SFL+  +    +  VI     ++      E     +  IL      
Sbjct: 1   MYIIDRYLLTQFIKSFLIFFISFTGLYVVIDSFNNLDEFLRYGEQTGRGAFPILFDYYTP 60

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            I T   M       +     +T + R+ E+  +   G ++  +++PV+    L++I   
Sbjct: 61  RIFTFFNMTGGILTLIAAMFTVTWLQRHNEMTALMAAGITKERIVRPVIIAVGLIAILGA 120

Query: 116 ISENIIEPKCRSTIKQ 131
           ++   + P+    + +
Sbjct: 121 LNREFVVPEYSDALSR 136


>gi|157736891|ref|YP_001489574.1| hypothetical protein Abu_0640 [Arcobacter butzleri RM4018]
 gi|157698745|gb|ABV66905.1| conserved hypothetical membrane protein [Arcobacter butzleri
           RM4018]
          Length = 355

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 125/366 (34%), Gaps = 24/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+    +F++  + +      I  LQ    + +   S N+ L    Y     
Sbjct: 1   MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIPA---SANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          L    +N E +  +  G +R  +  PV+ ++I  S+ + +    
Sbjct: 58  LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSI--SLLITLIFLQ 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P   S   +   K      FS  + ++F + ++  Y+   K  P     + I I   +
Sbjct: 116 MTPLAYS--YEQKRKILNDEYFSNTKSDIFLKYNE-YYVYFQKLLPLEKKAENIHIYKVK 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                +    +      D+  +    ++N  E    +    D+   KF  +TL+      
Sbjct: 173 GDNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFL-HTLEGFKPKI 231

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF--PVIFGLISIVAA 293
              V ++                  +    +  R+  + +L    F  P++  + S  + 
Sbjct: 232 LDNVYESKSDFSIMDAVSALILLKDQGMNTQKIRTILYNQLIIPFFVIPILILVYSFASL 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP---ILYLFLFCISSIF 350
           + R     +     IF +L +     WGF +++ ++  +   IP   +L      +    
Sbjct: 292 NSRFFNMAKFVSFSIFGTLIV-----WGFFFLVFRLTSSGTVIPEISMLLTMFIWVIFSI 346

Query: 351 LLMIKK 356
               KK
Sbjct: 347 YFYNKK 352


>gi|62185346|ref|YP_220131.1| hypothetical protein CAB733 [Chlamydophila abortus S26/3]
 gi|62148413|emb|CAH64180.1| conserved hypothetical membrane protein [Chlamydophila abortus
           S26/3]
          Length = 357

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 105/316 (33%), Gaps = 13/316 (4%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
            +       +L+++ Y IP +LP + P    +   ++   ++ N ++  +  +G S+  +
Sbjct: 39  IAKDVPYPTVLRLTAYQIPYLLPFILPISCFISAFSLFRGLSDNNQITFLKASGASQAII 98

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
             PVL ++  +    F + + +   CR    +  A   +      L+     + + +   
Sbjct: 99  TFPVLMVSCAICCVNFYTCSELASICRFQTCKEIANMAMTSPTLLLQ--TLQKKESNRIF 156

Query: 160 KISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDIS 219
               +   +    +     RD +   +   ++   D+    +      +  K P +    
Sbjct: 157 ITVDHCAKSKFDNVITALKRDKEIANVGLIKTIIPDVANDTVQARGVVMISKLPSTLTDQ 216

Query: 220 IMKF-KSY---TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                K Y   TL        T  L A    +    +  P     +     TY  E  +R
Sbjct: 217 CSSHSKEYYIETLDEMLIPKITSTLFAGKSYMKTRTDYLPWKQLVKQSFSHTYLPETLRR 276

Query: 276 LTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYY 335
           +   L  +      +V    +   R+        I+L   F V      I+ K   + + 
Sbjct: 277 IGIGLLCITLTYSGMVLGTYKPRFRKS-------ITLYCIFPVMDLILLIVGKNTSSLFP 329

Query: 336 IPILYLFLFCISSIFL 351
              L++F   IS I  
Sbjct: 330 ALTLFIFPQVISWIVF 345


>gi|153004269|ref|YP_001378594.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027842|gb|ABS25610.1| permease YjgP/YjgQ family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 360

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 106/359 (29%), Gaps = 15/359 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R    +F+ +   +V I   +  +      +    +  + L++       V+  V P
Sbjct: 6   YVARRTLNAFVGALAGVVAIFLAVDFVDNSAAFTGPGWAPAV-LELYVNKAAVVVRQVAP 64

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +     +++  R  E   +   G     L  PV+ + +L    L +  ++   +  
Sbjct: 65  AAMILGAGIAVSTFRRTREYTAMRAVGLGPWRLAVPVVAVTLLAGGALLLVHDLWGVEAA 124

Query: 127 STIKQLSA-----KAQLALTFSYLEENLFFRLDDDLYIK-ISKYNPNNTLQGIFIVDSRD 180
              +++ A             +  E   +FR  D   +  +   +P      + +++  +
Sbjct: 125 QRAEEIQALRFGRGGDRRRFEAAREPKRWFRGGDGRRVYHLRGTSPEGGFAHVTVLEVSE 184

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTIV 239
                +    +  +  +    +L   E     P     +     + Y         + + 
Sbjct: 185 A-FRLVRRVDAERMRPEGDRWLLEHVEDRTFLPDGTVRVERAASRRYDFPEPPDAFAVVP 243

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
            +        LL+            +   + E + RL             +  A      
Sbjct: 244 GRPTQMRWQTLLSQ-IGIRRRLGLPVAELQLERYNRLAYPFA--GVPGAMLALALALRRN 300

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYI--IHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           R+      +  S+ +S  +FWG   +     +  +       +        +  L +++
Sbjct: 301 RKGHIAAALVESVGVSL-LFWGTQGVTWAMGLSGHVAPWVAAWAPNLVFLVVGALAVRR 358


>gi|15639868|ref|NP_219318.1| hypothetical protein TP0883 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189026106|ref|YP_001933878.1| hypothetical protein TPASS_0883 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3323200|gb|AAC26573.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018681|gb|ACD71299.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
          Length = 365

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 120/351 (34%), Gaps = 13/351 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           +L      F +  +    I   I IL  +    S+    + L+KI    IP  + +  P 
Sbjct: 1   MLDMFLPIFFLVLVCASMILDAIDILVNLTQFISNGYRFSSLVKIWYVSIPHYVLLCCPL 60

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
                 T  +  +    E L I   G S  +++ P       L+I +F  +N +    +S
Sbjct: 61  SVLFAATYTVRILYVQNEFLAIHFGGLSFFSIVGPWFGFMCFLAIGIFAFDNSVVVVSQS 120

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN--TLQG-IFIVDSRDTQTH 184
              ++ A+  ++      E ++     D   I I+         L   + I+ + +    
Sbjct: 121 KKDEIIAR-TVSYAQGNSENDVVASSFDGKIISIAGAYHRGQKVLVDMLVIMKNSNGTIQ 179

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           K+  A +     DR   +L    V+  +   K +      S+ L+               
Sbjct: 180 KLIEAHTAHWQKDR--WVLIKPVVYTITHEMKLMVSEYLDSFELREPLELFDHQDFLTKG 237

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
            ++   +    +   Y  +        F+K+     FP+   ++  ++    + +++R  
Sbjct: 238 MSIQK-IKETLHTLKYASKPHRELSIRFYKKF---YFPLTMCIMLCLSFLTGSFLKKRSL 293

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSIFLL 352
           I  IF S+ ++   +      I    +   +P++     +  F     ++ 
Sbjct: 294 IMYIFCSVVLASAYYVVEMTSIVCAREEYFSPFWGVFFPVLTFLFLIFYVW 344


>gi|329114704|ref|ZP_08243462.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
 gi|326695970|gb|EGE47653.1| Permease YjgP/YjgQ Family Protein [Acetobacter pomorum DM001]
          Length = 358

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 75/203 (36%), Gaps = 9/203 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   +    +     +V +  ++ +L++   +      +  +L  +    P +L    
Sbjct: 8   RYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQRHLGVQGILSFAAMRAPFLLAGAL 67

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +    +LT M   +E+ I+   G S   L K ++   +++     + ++ + P+ 
Sbjct: 68  PLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQVTPRS 127

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---GIFIVDSRDTQ 182
              +     +            + F+  D +    I   +    +     I+I D+ + +
Sbjct: 128 EQALAAWWNRTDPHPENG----HAFWFHDGNRIAHIGYTSDGGNMLAKVDIYIRDT-NGR 182

Query: 183 THKIYYAQSGSIDLDRQAIILND 205
             +I +A+S      R   +L++
Sbjct: 183 LQQILHAKSADYTHTR-GWLLHN 204


>gi|218672883|ref|ZP_03522552.1| putative permease protein [Rhizobium etli GR56]
          Length = 340

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 109/349 (31%), Gaps = 24/349 (6%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTV 60
            +   Y  R    +     + +  I++++   +    +S     ++   + ++   +P +
Sbjct: 4   GTLSRYFFRRYLATTGWFLIGVSAISFLLDFSETAGRMSGLPGYTIGGGIVMTAVRLPLI 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF        VL  +NR  EL++    G S    + P +  ++ L +    + N 
Sbjct: 64  LQQTIPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFIAGSLALGLLTMTALNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYNPNNT--LQGIF 174
           +    +     + +  +                     DD+ I       N T  +  + 
Sbjct: 124 LAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAQTVQENGTKLVDAVL 183

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIMKFKSYTLQT 230
           I      +      A +  ++     +   +G V RK          + +          
Sbjct: 184 IHFDSSGRVILRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLRT------NL 234

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
           +       +          L N      ++     +   ++F+  L+Q L  V   LI+ 
Sbjct: 235 KQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLLLVAMTLIAA 293

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL 339
             + K +   Q +   P+ +   +S  + +  + ++     +    P +
Sbjct: 294 TVSLKFSRFNQSR---PVILGGILSGFMLYVITVLVKAFGSSGVVPPFV 339


>gi|219685677|ref|ZP_03540491.1| conserved hypothetical integral membrane protein [Borrelia garinii
           Far04]
 gi|219672793|gb|EED29818.1| conserved hypothetical integral membrane protein [Borrelia garinii
           Far04]
          Length = 390

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 3/164 (1%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
                      Y +P V+ +  PF   +     +     N E+L   + G S   LI P 
Sbjct: 9   VPFLKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKINNEILAFRSIGISIFDLIFPF 68

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             L +++    FIS +I+ P       ++  + +  +    L+     +   DL     +
Sbjct: 69  FKLGVVIVFISFISNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGE 127

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI--ILND 205
            + N      F  ++R     +I+ A++  I  +   +  ILND
Sbjct: 128 KSENGYKNVTFFDNTRLKGFDRIFMAKNLDIRKENFQVYFILND 171


>gi|58040479|ref|YP_192443.1| hypothetical protein GOX2051 [Gluconobacter oxydans 621H]
 gi|58002893|gb|AAW61787.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 380

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 82/221 (37%), Gaps = 16/221 (7%)

Query: 10  RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF 69
           R +   FL+    +V +  ++ +L++   + +       +L  +   +P +   + P  F
Sbjct: 30  RALLGRFLLCGAVLVSLLEILALLEKTTPILNRHLGFRGILTFAFLHLPALSIDILPLAF 89

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +    +LT M  ++E+  +   G S   L + +L   ++  I    ++  + P C + +
Sbjct: 90  MVGALFLLTQMTLSSEISALRAAGLSTPALYRLLLPAVLIAGIGGTCAQYWLVPACENAL 149

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLY-IKISKYNPNNT-LQGIFIVDSRDTQTHKIY 187
                +           E+           ++I +     T L+ + I    +       
Sbjct: 150 TTWWNRTDPLAGQDGQPEDNILWFRAGPTLVRIGQIAQGGTFLRDVTIYHRDN------- 202

Query: 188 YAQSGSIDLDRQAIIL--NDGEVHRKSPISKDISIMKFKSY 226
              +G +       +L   DG+ H     ++D+S+   KSY
Sbjct: 203 ---TGLLTGTEHTNVLTYRDGQWH--PDGAQDLSLSDDKSY 238


>gi|163759135|ref|ZP_02166221.1| putative permease [Hoeflea phototrophica DFL-43]
 gi|162283539|gb|EDQ33824.1| putative permease [Hoeflea phototrophica DFL-43]
          Length = 345

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 118/348 (33%), Gaps = 23/348 (6%)

Query: 12  IGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
              ++ ++ L I+ +    +  +R++     T +    L +S   +PT+L    PF   +
Sbjct: 2   TFLTYCLAILVIILLVDFNESGRRLSAAPEYTVTTG--LLVSALRVPTILQAAIPFVVLI 59

Query: 72  ETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQ 131
            +   L  +NR  EL++    G S    + P++   +L+        N          + 
Sbjct: 60  ASIATLLQLNRKYELVVARAAGISAWQFLAPLVAANLLIGFIAVAGLNTFAASAMQWAET 119

Query: 132 LSAK-----AQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQG--IFIVDSRDTQT 183
           +  +     AQ + +  +L +        D  +         T L G   F+ D  D   
Sbjct: 120 IIVERNLGSAQSSDSAPWLRQ---RTEQGDTVLGARASAAGGTRLSGATFFLFDE-DQNI 175

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
            +   A++  +      +        R+   S+ +  ++  S     ++      +   +
Sbjct: 176 KERLEAETAVLGDGEWVL-----TNVRRIRGSEPVEQVESASVPTSLKAEFVGESLTSPD 230

Query: 244 DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRK 303
                 L +              +Y  +FH+ + Q        LI+ + + K   VR  +
Sbjct: 231 TVPFFELRD-KIAVAKSFGLSATSYEMQFHRLVAQPALLAAMTLIAAIVSLK--FVRFGQ 287

Query: 304 KIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            +  I   +   F ++   S +I          PI+  +L  + +  L
Sbjct: 288 SLTVILGGILAGFVLYVV-SELIQAFANAGTIPPIVAAWLPVLVASAL 334


>gi|225848308|ref|YP_002728471.1| permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643577|gb|ACN98627.1| putative permease, YjgP/YjgQ family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 355

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 132/364 (36%), Gaps = 12/364 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  + YI   +   FL+       ++  +++++ +    S  +  N++L      +P  
Sbjct: 1   MKILDRYIYEKLTVYFLIVFPAFSLVSVFVELIEILRK--SKVQDFNLILIYILAKLPEN 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    V   + ++ E+  I   G S   +   ++  +I +S    ++  +
Sbjct: 59  FYYIVPISLIISAFVVANEIVKSREIYPILLNGISINYISTRIVIFSIFISFLQVLNLEV 118

Query: 121 IEPKCRSTIKQLSAKAQLALT--FSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
           + PK      +   K +         +  NL+ RLD+  +I    ++    +    ++ S
Sbjct: 119 LMPKSNKVYVETYQKLKNQPLEDEKAIAYNLWLRLDEKNFIYFDFFDLEKKVGKEIVLIS 178

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            D         ++ S  ++  ++ L  G+        +D+ + KF    +          
Sbjct: 179 MDENFLPTNRWEAESFKVESNSLTLLRGK-EITVKSIEDVKVSKFDEKKVYVSVDPEKIK 237

Query: 239 VLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
            L    + +S   L                + S+F+++L   + P I  + ++       
Sbjct: 238 KLIKEKKPVSITQLYKVAKIAQNYGYDASYFWSKFYQKLATVISPFILTVFAV-----GF 292

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
           + R+ K I       ++ +         I  +   PYY    +  LF +S  F LM K K
Sbjct: 293 IWRKNKFITLAGFLSTVLYWYGTSIVSAIASVGNIPYYFIFSFDVLF-LSIGFYLMFKTK 351

Query: 358 YTKI 361
           + ++
Sbjct: 352 HPEL 355


>gi|55980367|ref|YP_143664.1| hypothetical protein TTHA0398 [Thermus thermophilus HB8]
 gi|55771780|dbj|BAD70221.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 336

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 116/352 (32%), Gaps = 30/352 (8%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              Y+LR +   +L+       +     +     ++ S       +  +  Y +P  L +
Sbjct: 2   LGRYVLREVLVPYLVGVFLFAALLTFDLLSSLSGVLLSRGVGAREVGLLVLYRLPWTLSL 61

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P          L  + R +EL      G   + L++P++ LA+ +S+   ++   + P
Sbjct: 62  ALPLGLVFAVLVGLAGLIRRSELKAAYAAGVPPLALLRPLVLLALAVSLLNLLNLAELRP 121

Query: 124 KCRSTIKQLSAKAQL--ALTFSYLEENLFFRLDDDLYIKISKYNP---NNTLQGIFIVDS 178
           + +     L  +           L   ++      +Y    +  P    N L+G+ +VD 
Sbjct: 122 RSQEAYDGLLGRILYGEGGASGVLRRQVYAPPGLGVYF-AEEVYPEPEGNRLRGVRVVDE 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
           R     ++Y A+ G  D +   +    G V     +     ++ F +          S  
Sbjct: 181 R----GRVYSAEEGLWDEEGWRL---KGYVVEGEEVRPFEGVLPFPA----RFRPKESLG 229

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                D      L         R ++    R  FH+RL   L     G + + AA     
Sbjct: 230 SRDPYDSTPLEELW-------ARAQVEPEARFAFHRRLADAL-----GGLVLGAAAAALG 277

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
           +  R+        + + FG +  ++        +   + + YL      ++ 
Sbjct: 278 LSLREAAWAFLGVVLLIFGYYVLWTLAAQLARYDVSPL-LAYLPDLFYGALA 328


>gi|126031979|gb|ABN71555.1| putative permease [uncultured bacterium]
          Length = 365

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 123/357 (34%), Gaps = 20/357 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTV 60
           ++   YI +      +   L +V +  ++ +L     + S    S   L       +P +
Sbjct: 9   RTLTRYIAKLFVVRVVGVLLMLVLVLQMLDLLSESGKILSQPGNSEAQLWTYVSLRLPQL 68

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P+   + T   L ++N+N+E++ +   G S   ++ P+L  A+ +S        +
Sbjct: 69  VARFLPYSALLATIITLATLNQNSEVVAMKAAGLSAHQVLAPLLLTALGVSATSLAFNEL 128

Query: 121 IEPKCRSTIKQLSAKAQLALT-FSYLEENLFFRLDDDLYIKISKYNPNN---TLQGIFIV 176
           +  +  + +K   A     +   S    N++ R  +D+ +  +  +       L G+   
Sbjct: 129 VVTRSSAALKAWQAVDYGVVPRGSAGRTNVYTRDGNDI-LTAASVSGEGSAMRLVGVTFY 187

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILN-----DGEVHRKSPISKDISIMKFKSYTLQTE 231
             RD          S   +  +    L      D    ++ PI+  +         +   
Sbjct: 188 -RRDVNGAIREKIVSPRANFAQPGWRLEQPVAFDVASVQQKPIAPLVVARAVTPVQVSIS 246

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIV 291
           + ++    +    ++++ L      N     EL   +      +L+  L   +  L+  +
Sbjct: 247 TIDADGQNIVQLGRSIAAL----KANGRRTSELEGKW----WHKLSGPLSAALMPLLGAI 298

Query: 292 AADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
           AA   A   Q      + ++L  ++ V    +  +      P  I     FL  +  
Sbjct: 299 AAFGLARSGQLLIRAVLGMALGFTYFVVDNAALAMGNFGGYPPLIAAWAPFLLFLLI 355


>gi|315636068|ref|ZP_07891325.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479637|gb|EFU70313.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 355

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 129/361 (35%), Gaps = 25/361 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     YIL+    +F++  + +      I  LQ    + +   S N+ L    Y     
Sbjct: 1   MSILSKYILKKYLINFIIVLISLELFFVGIDYLQNFKNIPA---SANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          L    +N E +  +  G +R  +  PV+ ++I  S+ + +    
Sbjct: 58  LTLALPLSIVFGWIVTLVLFIKNNEFVAFNALGATRKNIFMPVVIVSI--SLLITLIFLQ 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           + P   S   +   K      FS  + ++F + ++  Y+   K  P     + I I   +
Sbjct: 116 MTPLAYS--YEQKRKILNDEYFSNTKSDIFLKYNE-YYVYFQKLLPLEKKAENIHIYKVK 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
                +    +      D+  +    ++N  E    +    D+   KF  +TL+      
Sbjct: 173 GDNLVETIIGEKAYFQNDKWYVVDVKVINKPENIDINNSKLDVRYEKFL-HTLEGFKPKI 231

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF--PVIFGLISIVAA 293
              V ++                  +    +  R+  + +L    F  P++  + S  + 
Sbjct: 232 LDNVYESKSDFSIMDAVSALILLKDQGMNTQKIRTILYNQLIIPFFVIPILILVYSFASL 291

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           + R     +     IF +L +     WGF +++ ++  +   IP + + L    ++F+ M
Sbjct: 292 NSRFFNMAKFVSFSIFGTLIV-----WGFFFLVFRLTSSGTIIPEISMLL----TMFIWM 342

Query: 354 I 354
           +
Sbjct: 343 V 343


>gi|260433487|ref|ZP_05787458.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417315|gb|EEX10574.1| permease, YjgP/YjgQ family [Silicibacter lacuscaerulensis ITI-1157]
          Length = 366

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 123/363 (33%), Gaps = 29/363 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + Y  R   +SF++     + +  +I +++++     +  S   LL+++    P  + 
Sbjct: 2   ILDRYFARRFLQSFVVIGAIFLTLMILIDLIEQVRRFGDADLSFGQLLQLTLLNTPAAIS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL++    G S I  +   + LA+ +        N I 
Sbjct: 62  EMLPLLMILSTIALFVGLARSSELVVTRAIGRSGIRALAAPVALALGIGALAVALLNPIA 121

Query: 123 PKCRSTIKQLSAKAQL--ALTFSYLEENLFFRL---DDDLYIKISKYNPNNTLQ--GIFI 175
                  + LS + +   + T S   + L+ R    D    I  +     +TL+   + I
Sbjct: 122 AATSEKYETLSDQYRNGGSSTLSLSRDGLWLRQGSKDGQSVIHAAGTENGDTLKLIDVTI 181

Query: 176 VDSRDTQTHKI-YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM---KFKSYTLQTE 231
           +             AQS           L DG+   +      +S     +F S    T 
Sbjct: 182 ITFSPQGIPTRQIIAQSAE---------LLDGQWLLRGVKDWSLSRAANPEFFSSEYDTL 232

Query: 232 SANSSTIVLKANDQNLS------FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           +  ++    +  D+         + L     +        + Y      +L +  F V  
Sbjct: 233 ALPTTLTRERILDRLGHQGLVSIYDLPQLIRDLAQAGFSTKQYEVWLQAQLARPFFLVSM 292

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLF 344
            LI   AA     VR       +  ++ + F +++  ++     E     + +  +   F
Sbjct: 293 VLIG--AAFTMRHVRFGGTGIAVLTAVLLGFAIYFVRNFAQILGENGQLPVMLAAWAPPF 350

Query: 345 CIS 347
              
Sbjct: 351 AAI 353


>gi|332086637|gb|EGI91777.1| hypothetical protein SB521682_3571 [Shigella boydii 5216-82]
          Length = 109

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK  E YI+R   R  L+   F++FI       + +   ++ T +L+++L I  Y +   
Sbjct: 1   MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIA 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L M+ P    +     L  M   +E+  I   G  R    KP   
Sbjct: 61  LEMLLPVGLYVSVGVTLGQMYTYSEITAISAAGAVRDACTKPFFI 105


>gi|224534174|ref|ZP_03674754.1| conserved hypothetical integral membrane protein [Borrelia
           spielmanii A14S]
 gi|224514599|gb|EEF84913.1| conserved hypothetical integral membrane protein [Borrelia
           spielmanii A14S]
          Length = 429

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIIAEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   L+ P   L I++    FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLVPFFKLGIIIVFISFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       ++  + +  +    L+     +   DL     + + N      F  ++R  
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENGYKNVTFFDNTRLK 184

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILND 205
              +I+ A++  I  +   +  ILND
Sbjct: 185 GFDRIFMAKNLDIRKENFQVYFILND 210


>gi|295917939|gb|ADG60246.1| permease YjgP/YjgQ [uncultured bacterium]
          Length = 122

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 41/101 (40%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           + + + YILR +        +    +  + ++L+    VS+    + ++ ++   L+P  
Sbjct: 19  ITAIDRYILRLVLVPMFGVFILAASLLMLEKMLRLFEFVSTQGGPVQVVFRMLVNLVPEY 78

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIK 101
             +  P    +        +  ++EL ++   G S   L++
Sbjct: 79  AGLAIPLGLMLGILLAFRKLATSSELDVMRAVGMSYSRLLR 119


>gi|258542690|ref|YP_003188123.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256633768|dbj|BAH99743.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01]
 gi|256636827|dbj|BAI02796.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-03]
 gi|256639880|dbj|BAI05842.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-07]
 gi|256642936|dbj|BAI08891.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-22]
 gi|256645991|dbj|BAI11939.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-26]
 gi|256649044|dbj|BAI14985.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-32]
 gi|256652031|dbj|BAI17965.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655088|dbj|BAI21015.1| transporter YjgP/YjgQ [Acetobacter pasteurianus IFO 3283-12]
          Length = 364

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 74/203 (36%), Gaps = 9/203 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+   +    +     +V +  ++ +L++   +      +  +L  +    P +L    
Sbjct: 14  RYLSMALLTRVIFCGAVLVGLLEILALLEQTTPILQRHLGIQGILSFAAMRAPFLLAGAL 73

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P    +    +LT M   +E+ I+   G S   L K ++   +++     + ++ + P+ 
Sbjct: 74  PLSVLIGALLMLTQMTLASEIAILRACGLSTFGLYKYLIPATLVIGFAGVVLDDQVTPRS 133

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---GIFIVDSRDTQ 182
              +     +            + F+  D +    I   +    +     I+I D+   +
Sbjct: 134 EQALAAWWNRTDPHPENG----HAFWFHDGNRIAHIGYTSDGGNMLTKVDIYIRDAS-GR 188

Query: 183 THKIYYAQSGSIDLDRQAIILND 205
             +I +A+S      R   +L++
Sbjct: 189 LQQILHAKSADYTHTR-GWLLHN 210


>gi|268678855|ref|YP_003303286.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616886|gb|ACZ11251.1| permease YjgP/YjgQ family protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 353

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK FE YI++   ++FL+  + +      + +L     +     S N+ +  + +   + 
Sbjct: 1   MKLFETYIIKNYLKNFLVIFIGLDLFYVGVDLLTNYKNIPD---SANLQILYALFQAMSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M +  EL+ +  +  ++  L++P+  +A++LS+        
Sbjct: 58  INYVLPLSIVFAMIVTYFAMLKTNELICMYASSITKKALVRPLFGVALVLSLLHIGLNY- 116

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
                 +   +  +  +     S   E+LF +  D  Y+   K +P       + I D  
Sbjct: 117 ---TEFAYAYEYGSNLKKYNRISNSSEDLFIK-HDQQYVYFKKLDPLKQVAYDVTIFDVE 172

Query: 180 DTQTHKIYYAQSGSIDLD 197
                +I  A+  S   D
Sbjct: 173 SADVKRIIRAKMASFVKD 190


>gi|213162832|ref|ZP_03348542.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 219

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 22/211 (10%)

Query: 149 LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIIL 203
            F +  +   +   +    +    +F+   R        +  A SG +       Q + L
Sbjct: 1   QFQQATNGSSVLFIESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTL 60

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
           N G     + + +D  I  F++Y         +      +  ++  L N + +       
Sbjct: 61  NKGTRFEGTALLRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND------- 113

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
                R+E H R+T      +  L+ +         RQ +      +S+  +  ++  F 
Sbjct: 114 ---RARAELHWRITLVFTVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFF 163

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFLLMI 354
            I   I+ N     +  +      ++  L +
Sbjct: 164 LIQTSIKSNGGKGKLDPVIWMWAVNLIYLAL 194


>gi|197105523|ref|YP_002130900.1| hypothetical protein PHZ_c2060 [Phenylobacterium zucineum HLK1]
 gi|196478943|gb|ACG78471.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 351

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 11/354 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           S  LY+ R      L +   +V I  ++ +L     +         +   +   +P ++ 
Sbjct: 2   SLGLYLFRLAFGRILAALAVLVGILQILDLLDVTTEILDRELGAQGVAYYALLRLPRLVE 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P      +      +   + +  + +TG S   +    L  A L++    +    + 
Sbjct: 62  QAAPLAVLAGSLFAFAKLAGESAVTAMRSTGISAYRITLLALPAAALVAAAQLVIGMAVA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQ 182
           P+  + + +   +A         ++ + FR+ DD+ +          +  + I   RD  
Sbjct: 122 PRTDAALTRW-WQATTPREEVKPQDVITFRVGDDI-VSARPSADAQRMSEVVIY-RRDGA 178

Query: 183 THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
              +    + +   D+ A  L        S    ++     +S T       +    L++
Sbjct: 179 GRLVQRTAADAAVYDQGAWRLIAPRFEAISE--GEVQTGAAESMTWTRSLRPADVRALQS 236

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
               +S        +          Y ++ H+    W  P    ++ ++AA       + 
Sbjct: 237 GGSTISAAEARRALHGGVSVRPKTYYDTQLHR---AWAAPAACLVMLLLAAPAALANFRG 293

Query: 303 KKIHPIF--ISLSISFGVFWGFSYIIHKIEQNPYYIPIL-YLFLFCISSIFLLM 353
                +   ++  + F VF G    + +    P  +       +F    +  L+
Sbjct: 294 GGTTLMVQCLAAGLLFLVFDGAFTALGESGAAPAMLAAWGAPVIFGALGVTALL 347


>gi|319404055|emb|CBI77643.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 363

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 124/359 (34%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y      ++   FL+    +V +    +   ++ L+     +      IS   IP 
Sbjct: 5   TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLALLP--HYTAKGAFLISLLRIPL 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF        +L S+N+  EL++  + G S    + P  F A L  +F  +  N
Sbjct: 63  IMQQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFIN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISK-YNPNNTLQGI 173
            +     S  K++ A+ +         +              + +        + +L   
Sbjct: 123 PLAAWSSSQAKKMIAEWRSNSAQISTTDTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDA 182

Query: 174 -FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F+  + +         +  ++     A +L +G +++     +  + ++ K++    + 
Sbjct: 183 TFVQYNENATVKNWINTKKATL--TDGAWLLTNGTIYKIGQTPEKFTELRIKTH---LKP 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +  +          L          R       + + H + +    P++   ++++A
Sbjct: 238 EFLTEYLTDPITIPFYTL---PKKIAVARSLGYSANKFDMHLQ-SLIALPMLLVAMTLIA 293

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A     + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F 
Sbjct: 294 ATVSLKIPRFGQSRTLILGGVIAGFILYVISMLVQSFGNAGYIPPIIAAWVPVIVALFF 352


>gi|111115642|ref|YP_710260.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
 gi|110890916|gb|ABH02084.1| hypothetical protein BAPKO_0860 [Borrelia afzelii PKo]
          Length = 429

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 3/206 (1%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            S+E YI+    + FL++ LF  F+ ++ QIL  + ++  +            Y +P V+
Sbjct: 6   NSYESYIITEFFKYFLITFLFFFFVFFINQILFFMRILLQNYVPFFKAFIFIIYSLPMVI 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  PF   +     +     + E+L   + G S   L+ P   L I++    FIS +I+
Sbjct: 66  ALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLIPFFKLGIIIVFISFISNDIL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDT 181
            P       ++  + +  +    L+     +   DL     + + N      F  ++R  
Sbjct: 126 LPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGEKSENGYKNVTFFDNTRLK 184

Query: 182 QTHKIYYAQSGSIDLDRQAI--ILND 205
              +I+ A++  I  +   +  ILND
Sbjct: 185 GFDRIFMAKNLDIRKENFQVYFILND 210


>gi|237752465|ref|ZP_04582945.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375954|gb|EEO26045.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 357

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 121/362 (33%), Gaps = 21/362 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+     + F    + +      I +++ ++ + S   S N+ + +  Y     
Sbjct: 1   MKLFFRYVSFLYLKYFFYLFVSLECFFVAIDLVKFLDDLPS---SANLFILLLAYDFMYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    +    +L ++ ++++       G ++I +  P+  L+  +++        
Sbjct: 58  SQFILPLSLILAQIVLLINLLKSSQFTAFLALGFAKIKIFYPIFLLSFCITLL--FIALN 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
             P      K+              + +LF + + + YI   K  P     +G+ + +  
Sbjct: 116 ATPFAY--AKERVDLIIDQGFVGNYKSDLFVKYNQN-YIYFKKIYPLLQRAEGVIVYEIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSP----ISKDISIMKFKSYTLQTESANS 235
            TQ       +S     + Q  IL +  +             + I K  +Y    +    
Sbjct: 173 PTQNSLTRIVESKMAQFNGQDWILENVTITTLDDNLELGKNPLKIQKETTYKTLHDFKPK 232

Query: 236 STIVLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               +     ++S L           +    +  R   +  L    FP+   LI I  A 
Sbjct: 233 ILDNIYEKQGSISILDAFEAFMLLKEQNANTQKVRGALYNLL---FFPLFAPLIMICLAV 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISSIF 350
                 +      + +++ +   + WG  +   K+  + +  P    I+ +F   ++S F
Sbjct: 290 FIPNSNRYANFSLMTLAMILGVLITWGIFFSFSKLSISGFLQPEFSVIMPIFTLFLASSF 349

Query: 351 LL 352
             
Sbjct: 350 CF 351


>gi|83952307|ref|ZP_00961039.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
 gi|83837313|gb|EAP76610.1| permease, YjgP/YjgQ family protein [Roseovarius nubinhibens ISM]
          Length = 363

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 107/345 (31%), Gaps = 15/345 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y  R    + +        +  +I ++  +            +L+I    +P    
Sbjct: 2   ILHFYFARKFLWTLIGIATVFSVLLGLIDLVDELQDFPD--LPFFDVLEIVLLNLPHANY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + T  +   + R++EL+++  +G S +  +   + +A L+ +      N + 
Sbjct: 60  EILPLVMILATVALFVRLARSSELVVLRASGRSALAGLAGPVAVAALVGLVGVTMFNPVV 119

Query: 123 PKCRSTIKQLS--AKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPN-NTLQGI-FI 175
                    L            +   E L+ R    +    I      P+ +TL G  F 
Sbjct: 120 AASAKRYNDLVNGHSGLGDNVLAISSEGLWLRQGTEEGQTVIHAKSATPDLSTLFGATFT 179

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK-SPISKDISIMKFKSYTLQTESAN 234
             + +    +   A+S  +   +    L+D ++    +  + + S       T++     
Sbjct: 180 SFTPEGDPMRRLTAESAEL--GQGQWHLSDVKIWDLANTDNPEASARTQDRLTIRAALTR 237

Query: 235 SSTIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              I      +    + L    +           Y   F   L Q LF +   L+   AA
Sbjct: 238 DRIIDSFGKPEYIPIWDLPAFIDQLETAGFSARRYAVWFQMELAQPLFLIALVLVG--AA 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
                 R       +  ++ + F + +  ++     E     I +
Sbjct: 296 FTMKHARLANTGTSVLAAVMLGFTLHYIRNFAQVLGENGQIPILL 340


>gi|319407067|emb|CBI80704.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
          Length = 363

 Score = 68.4 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 121/357 (33%), Gaps = 17/357 (4%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVS-SSTESLNILLKISGYLIPTVL 61
           +   Y      ++     L +  +  +I   +  + ++     +      IS   IP ++
Sbjct: 5   TLGRYFFMLYLKTVCFFLLGVFILVLLIDFTENSSKLAFLPHYTAKGAFLISLLRIPLIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF        +L S+N+  EL++  + G S    + P  F A L  +F  +  N +
Sbjct: 65  QQLFPFIALFSAITMLISLNKKLELVVARSIGISAWQFLAPACFGAFLFGLFSILFINPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLF-----FRLDDDLYIKISK-YNPNNTLQGI-F 174
                   +++ A+ +     + +                + +        + +L    F
Sbjct: 125 AAWSSFQAEKMIAEWRSNNAQTSITGTRIPWLTQHTNLGRITVGAKSIIYQDLSLIDATF 184

Query: 175 IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +  + +         +  ++     A +L +G +++     +  + ++ K++        
Sbjct: 185 VQYNENATVKNWINTKKATL--TDGAWLLTNGTIYKIGQTPEKFTELRIKTH------LK 236

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              +     D       N        R       + + H + +    P++   ++++AA 
Sbjct: 237 PEFLTEYLTDPITIPFYNLPKKIAVARSLGYSANKFDMHLQ-SLIALPMLLVAMTLIAAT 295

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
               + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F 
Sbjct: 296 VSLKIPRFGQSRTLILGGVIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFF 352


>gi|283780133|ref|YP_003370888.1| permease [Pirellula staleyi DSM 6068]
 gi|283438586|gb|ADB17028.1| permease YjgP/YjgQ family protein [Pirellula staleyi DSM 6068]
          Length = 386

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 5/134 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-----LNILLKISGY 55
           M + + Y+L    R  L+  + +  +  VI  L  ++  S+  E      L ++ +    
Sbjct: 1   MTTIDRYVLTIFIRVLLICFVSLAGLFVVIDCLGNLDEFSNYGEKHAGGILGVIFEYYSA 60

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
            +             +     +T + R  EL  +   G S    ++ V   A ++++   
Sbjct: 61  HVLGFFDRTIGLLAMVAAIFTVTWLQRTQELTALAAAGISPARAMRSVFIAAGIVALLGA 120

Query: 116 ISENIIEPKCRSTI 129
            +     P+ R+ +
Sbjct: 121 ANREFNLPQMRAKL 134


>gi|62289648|ref|YP_221441.1| hypothetical protein BruAb1_0705 [Brucella abortus bv. 1 str.
           9-941]
 gi|82699576|ref|YP_414150.1| YjgP/YjgQ permease [Brucella melitensis biovar Abortus 2308]
 gi|189023898|ref|YP_001934666.1| permease [Brucella abortus S19]
 gi|254688958|ref|ZP_05152212.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 6
           str. 870]
 gi|254697092|ref|ZP_05158920.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254729988|ref|ZP_05188566.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 4
           str. 292]
 gi|256257206|ref|ZP_05462742.1| Predicted permease YjgP/YjgQ family protein [Brucella abortus bv. 9
           str. C68]
 gi|260545600|ref|ZP_05821341.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260754447|ref|ZP_05866795.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260757666|ref|ZP_05870014.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260761493|ref|ZP_05873836.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883476|ref|ZP_05895090.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297248056|ref|ZP_06931774.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
 gi|62195780|gb|AAX74080.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615677|emb|CAJ10664.1| Predicted permease YjgP/YjgQ family [Brucella melitensis biovar
           Abortus 2308]
 gi|189019470|gb|ACD72192.1| Predicted permease YjgP/YjgQ family [Brucella abortus S19]
 gi|260097007|gb|EEW80882.1| permease YjgP/YjgQ family protein [Brucella abortus NCTC 8038]
 gi|260667984|gb|EEX54924.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 4 str. 292]
 gi|260671925|gb|EEX58746.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674555|gb|EEX61376.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 6 str. 870]
 gi|260873004|gb|EEX80073.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 9 str. C68]
 gi|297175225|gb|EFH34572.1| YjgP/YjgQ family permease [Brucella abortus bv. 5 str. B3196]
          Length = 362

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  N +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWEL 210


>gi|148261610|ref|YP_001235737.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|326405100|ref|YP_004285182.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
 gi|146403291|gb|ABQ31818.1| permease YjgP/YjgQ family protein [Acidiphilium cryptum JF-5]
 gi|325051962|dbj|BAJ82300.1| permease YjgP/YjgQ family protein [Acidiphilium multivorum AIU301]
          Length = 376

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 98/353 (27%), Gaps = 28/353 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE-SLNILLKISGYLIPTVL 61
           +  LYI R    + +     +  I  +   L  +   +   + +   +L +    +P + 
Sbjct: 12  TLSLYIGRRFLGAVVAMQAGLTAIGALFDFLDLLRQSADKPQATFWRMLALEVLRVPWLG 71

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++   TGTS    +   +  A L+ +    + + I
Sbjct: 72  MQILPFAVLLGGIFAFWRLTRSSELVVARATGTSVWQFLAVPVAGAALIGVLATTAGSPI 131

Query: 122 EPKCRSTIKQLSAK-AQLALTFSYLEENL-FFRLDDD-------LYIKISKY-NPNNTLQ 171
                +  + L +    +      L+    + R  DD         +           L 
Sbjct: 132 SAIMFARAEVLYSTYLGVDSGPLSLQGGQLWLRQADDAGGKGGIAILHADAVHLHGKVLT 191

Query: 172 GIFIVDSR---DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL 228
              I   R    T   +   A  G ++     +     E  R      +   +       
Sbjct: 192 TGHITVLRLTAQTTLQERIEAARGQLEPGGWRL-----ESARILTPDGEPRAVSALRIPT 246

Query: 229 QTESANSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
                         +  +   L   +     +     +    ++S     L   L     
Sbjct: 247 TLTVGRVQESFASPSALSFWALPGFIRLLRRSGFSATQHELAFQS----LLALPLLC--A 300

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            ++ + A       R+   I  I   +   F +F          +     + +
Sbjct: 301 TMVLVAAGFSMRPSRRGGAIQMIGAGVGCGFLLFMLSEVAAQLGKSGALPVGL 353


>gi|291279034|ref|YP_003495869.1| hypothetical protein DEFDS_0632 [Deferribacter desulfuricans SSM1]
 gi|290753736|dbj|BAI80113.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 119/360 (33%), Gaps = 5/360 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y+++    S +   +FI+ I    Q++Q    +S        +L      IP  
Sbjct: 1   MKKFNKYLIKSYLNSLVAILIFILIIYTFFQVVQHTKYISRYNTPFLNILIYDLMKIPYS 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P   +      +  + +N EL+   + G     +    L +  L  + L    + 
Sbjct: 61  IYQVFPVATSAAIVVTMLKLIKNNELIAYLSFGGRLRQIAVLFLSVNFLFFLILLYYSDA 120

Query: 121 IEPKCRS-TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDS 178
           I PK      K    K         L    F+  D +  I I   N       G+ I + 
Sbjct: 121 INPKIEKIRAKYKDEKIFFQKHTEKLTVTDFYFKDKESIISIDLINFDKKEFDGVTIYEK 180

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
                  +  A+     L        D ++     I   + I        +  +      
Sbjct: 181 DKDTISIVKRAKKAKY-LGNNIWEFQDFKIFDVKKIPTLLKIYDKYKLKSKILTKFIKIK 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +    +   L        + +    E++R  ++ ++   L  ++  ++ +      + 
Sbjct: 240 PDEPKKLSFKELSRVIKVYES-KGLSAESFRLIYYNKIAVPLILIVLTILLLPLTITISR 298

Query: 299 VRQRKKIHPIFISLSISFGV-FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
             Q  K+    +S++I F V +  F  +      NP+        LF I  + +L+ K++
Sbjct: 299 SYQYIKVAAKSLSVTIIFWVSYSVFYSLGKNGVINPFLANFSLHILFFIFGMIILLSKER 358


>gi|17987546|ref|NP_540180.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
 gi|225852206|ref|YP_002732439.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|254693440|ref|ZP_05155268.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|256044379|ref|ZP_05447283.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113222|ref|ZP_05454090.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264286|ref|ZP_05466818.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563731|ref|ZP_05834217.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|261213693|ref|ZP_05927974.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|265990797|ref|ZP_06103354.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994633|ref|ZP_06107190.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983249|gb|AAL52444.1| putative permeases [Brucella melitensis bv. 1 str. 16M]
 gi|225640571|gb|ACO00485.1| permease YjgP/YjgQ family protein [Brucella melitensis ATCC 23457]
 gi|260153747|gb|EEW88839.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260915300|gb|EEX82161.1| permease YjgP/YjgQ family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|262765746|gb|EEZ11535.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001581|gb|EEZ14156.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094546|gb|EEZ18355.1| permease YjgP/YjgQ family protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408705|gb|ADZ65770.1| permease YjgP/YjgQ family protein [Brucella melitensis M28]
 gi|326538429|gb|ADZ86644.1| permease YjgP/YjgQ family protein [Brucella melitensis M5-90]
          Length = 362

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  N +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENANRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWEL 210


>gi|225627183|ref|ZP_03785221.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225618018|gb|EEH15062.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 397

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 40  TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 99

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 100 QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 159

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 160 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 219

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 220 QFDEQKNIKDRYDARTATLQDGYWEL 245


>gi|90403464|dbj|BAE91930.1| hypothetical transmembrane protein [Brevundimonas diminuta]
          Length = 81

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 38/81 (46%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
          M   + Y+ R IG   + +   +  I  + Q L ++ ++    +S+ +++K++   +P +
Sbjct: 1  MTLIQRYLFRQIGLPIVAAVAALAGIGLLSQSLDQLEVIVERGQSVWVMVKLTLLALPQL 60

Query: 61 LPMVTPFCFAMETTNVLTSMN 81
          + ++ P    +     LT + 
Sbjct: 61 IAVILPIGLFVGALIALTRLQ 81


>gi|85706341|ref|ZP_01037435.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
 gi|85669114|gb|EAQ23981.1| permease, YjgP/YjgQ family protein [Roseovarius sp. 217]
          Length = 363

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 121/365 (33%), Gaps = 21/365 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             E Y  R    SFL   + +V +  +I ++  +        +   +L I    +P    
Sbjct: 2   ILERYFGRRFFMSFLGVTVTLVVMLGLIDLMDELGDFPE--LAFGQVLGIVLLKLPEAYY 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    + +  +   + R +EL+++  +G S +  +     +A+ + +      N + 
Sbjct: 60  EIIPLVMILASVALFLRLARTSELVVLRASGRSALQGLLAPAAVALAIGLLGLAVGNPLV 119

Query: 123 PKCRSTIKQLSAKA--QLALTFSYLEENLFFR---LDDDLYIKISKYNPN-NTLQGIFIV 176
                    L      Q +   +   E L+ R    +    I  ++ + +  TL      
Sbjct: 120 AATSKRHHDLVNSYSGQASSDLAIASEGLWLRQSAAEGQTVIYAARASSDLGTLYAPSFY 179

Query: 177 D-SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKSYTLQTESAN 234
           D + D +  +   A S  ++    A +L + ++   +   + + S  +    T+ ++   
Sbjct: 180 DFAPDGKPLRRISATSAQLEEG--AWVLTEAKIWDLAQGVNPEASAREDAQMTVPSDLTQ 237

Query: 235 SSTIV-LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
              +    + +    + L                Y   F   L Q +F  +  L+ I AA
Sbjct: 238 DRILDSFGSPEYVPIWELPKFIAQLEEAGFSARRYAIWFQSELAQPVF--LVALVLISAA 295

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN------PYYIPILYLFLFCIS 347
                 R       +  ++ + FG+ +  ++     E          + P +      + 
Sbjct: 296 FTMQHTRGANVGLSVLTAVLLGFGLHYIRNFAQILGENGQIPILLAAWAPPVASLFIGLG 355

Query: 348 SIFLL 352
            +  L
Sbjct: 356 ILLHL 360


>gi|224532217|ref|ZP_03672849.1| conserved hypothetical integral membrane protein [Borrelia
           valaisiana VS116]
 gi|224511682|gb|EEF82088.1| conserved hypothetical integral membrane protein [Borrelia
           valaisiana VS116]
          Length = 390

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
                      Y +P V+ +  PF   +     +     + E+L   + G S   L+ P 
Sbjct: 9   VPFFKAFVFIVYSLPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLVPF 68

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             L ++++   FIS +I+ P       ++  + +  +    L+     +   DL     +
Sbjct: 69  FKLGVVIAFISFISNDILLPLGSIGRLKIFNEIKEEIPHLVLKPYS-SKQYGDLIFVSGE 127

Query: 164 YNPNNTLQGIFIVDSRD-TQTHKIYYAQSGSIDLDRQAI--ILND 205
            + N   + +   DS       +I+ A++  I  +   +  ILND
Sbjct: 128 KSENG-YKNVTFFDSTGLKGFDRIFMAKNLDIRKENFQVYFILND 171


>gi|254718822|ref|ZP_05180633.1| hypothetical protein Bru83_04670 [Brucella sp. 83/13]
 gi|265983807|ref|ZP_06096542.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306838744|ref|ZP_07471578.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
 gi|264662399|gb|EEZ32660.1| permease YjgP/YjgQ family protein [Brucella sp. 83/13]
 gi|306406146|gb|EFM62391.1| permease YjgP/YjgQ family protein [Brucella sp. NF 2653]
          Length = 362

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
              +       Y A++ ++      +
Sbjct: 185 QFDKQKNIKDRYDARTATLQDGYWEL 210


>gi|319760186|ref|YP_004124124.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
 gi|318038900|gb|ADV33450.1| putative permease [Candidatus Blochmannia vafer str. BVAF]
          Length = 363

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 11/357 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K  ++YI + I  S  +  L ++ ++ +I+++  +      T S+  +   +   +P   
Sbjct: 3   KILDMYIKKSILSSISIVFLILISLSSIIRLIDGLRNFEKKTYSIIEIFFCTFLSLPKDF 62

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +  P    +     L  +    EL+I+   G S   +   V+ +++ + I   +    +
Sbjct: 63  ELFLPISILLGGLLGLGVLEIRNELVIMKVFGLSYFQITFSVVKVSVFILILHIMLNEWL 122

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSRD 180
            P  +  +       +    F   +    + +D++ ++ I      N + G+     ++D
Sbjct: 123 LPGSQYMLYIYQGHKEYNSYFFPEKNKNLWIIDNNGFVCIEYMPTTNNVFGVNLYYLTKD 182

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--STI 238
            +  KI Y +  +     ++  ++       S  +  ++   F  Y   T       S I
Sbjct: 183 KKIEKIIYFKDATYI--NKSWFVSSAIELNFSDKTHIVNRTVF-HYKWNTILTPDLLSII 239

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                  ++S L +      N   +  + Y   F  ++   L  +I  +IS++ +     
Sbjct: 240 TTNPRVLSVSKLFS-CIKYFNGINQNSQYYELIFWNKILSPLTGMIMLIISLLYSFGPFS 298

Query: 299 VRQRKKIHPIFISLSISFGV----FWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            ++          +   F V    F  F  + +        IP+L   +  I  +F 
Sbjct: 299 KKKIGFRLFFGSIIGFLFYVLHQFFDVFCVMHNIYPLVGSIIPVLLFIVINIVIVFY 355


>gi|15807417|ref|NP_296150.1| hypothetical protein DR_2430 [Deinococcus radiodurans R1]
 gi|6460254|gb|AAF11980.1|AE002073_10 hypothetical protein DR_2430 [Deinococcus radiodurans R1]
          Length = 350

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/368 (13%), Positives = 104/368 (28%), Gaps = 33/368 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
                 ILR + + +      ++ + +   +   +    +   + +        ++PT+ 
Sbjct: 4   SILPRSILREVLKMYGAGLALLLALQFADTLSSTLGKAIAYRATASESATAFLAILPTIF 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
                          L+ + R++EL      G   ++L+ P+L    L+    F +   +
Sbjct: 64  NRALVLSVPFAILLGLSRLQRDSELKAAFAAGIRPLSLVWPLLLPFTLVGALAFWNAGTV 123

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN--PNNT---LQGIFIV 176
            P       +        +       + +            +    P      L G+ + 
Sbjct: 124 VPAGLDRWDKTWYSI-FNVPEKIPTRDNYTYAPPGALYYAGRVTQAPQGQPAPLAGVMVQ 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILN------DGEVHRKSPISKDISIMKFKSYTLQT 230
                +   +Y A SGS +   Q+  L+       GE  R+      +           T
Sbjct: 183 -----RGGVVYTANSGSWNTAAQSWTLDAPWVTAPGERPRQQAGPVTLPQG-------DT 230

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
                +     +N    + L        +   +    Y  +   R      P+ F L   
Sbjct: 231 LRPPPAEAKKVSNAALRTAL-----AGESLTEQERREYTYQLASRYADPFTPIAFAL--- 282

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFS-YIIHKIEQNPYYIPILYLFLFCISSI 349
            AA    L+R +       I     F V W     +      +P     +   +F +  +
Sbjct: 283 AAAVLGLLIRNQAAALAAVIVFIAGFYVLWITMPQLARAGAVDPTLAAWVPSLIFLLLGL 342

Query: 350 FLLMIKKK 357
            L     +
Sbjct: 343 GLAWRVNR 350


>gi|254713811|ref|ZP_05175622.1| hypothetical protein BcetM6_10740 [Brucella ceti M644/93/1]
 gi|254717131|ref|ZP_05178942.1| hypothetical protein BcetM_12059 [Brucella ceti M13/05/1]
 gi|261218946|ref|ZP_05933227.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261321555|ref|ZP_05960752.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
 gi|260924035|gb|EEX90603.1| permease YjgP/YjgQ family protein [Brucella ceti M13/05/1]
 gi|261294245|gb|EEX97741.1| permease YjgP/YjgQ family protein [Brucella ceti M644/93/1]
          Length = 362

 Score = 66.1 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWEL 210


>gi|224533436|ref|ZP_03674029.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi CA-11.2a]
 gi|224513398|gb|EEF83756.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi CA-11.2a]
          Length = 390

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
                      Y +P V+ +  PF   +     +     + E+L   + G S   L+ P 
Sbjct: 9   VPFFKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKLHNEILAFRSIGISIFDLLVPF 68

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             L I+++   FIS +I+ P       ++  + +  +    L+     +   DL     +
Sbjct: 69  FKLGIVIAFVSFISNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGE 127

Query: 164 YNPNNTLQGIFIVDSRD-TQTHKIYYAQSGSIDLDRQAI--ILND 205
            + N   + +   D+       +I+ A++  I  +   +  ILND
Sbjct: 128 KSENG-YKNVTFFDNTGLKGFDRIFMAKNLDIRKENFQVYFILND 171


>gi|23501573|ref|NP_697700.1| hypothetical protein BR0686 [Brucella suis 1330]
 gi|161618655|ref|YP_001592542.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|163842956|ref|YP_001627360.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|254701469|ref|ZP_05163297.1| hypothetical protein Bsuib55_11506 [Brucella suis bv. 5 str. 513]
 gi|254704016|ref|ZP_05165844.1| hypothetical protein Bsuib36_08824 [Brucella suis bv. 3 str. 686]
 gi|254707610|ref|ZP_05169438.1| hypothetical protein BpinM_11731 [Brucella pinnipedialis
           M163/99/10]
 gi|254709807|ref|ZP_05171618.1| hypothetical protein BpinB_05956 [Brucella pinnipedialis B2/94]
 gi|256031298|ref|ZP_05444912.1| hypothetical protein BpinM2_11713 [Brucella pinnipedialis
           M292/94/1]
 gi|256060811|ref|ZP_05450971.1| hypothetical protein Bneo5_10662 [Brucella neotomae 5K33]
 gi|256159412|ref|ZP_05457190.1| hypothetical protein BcetM4_10688 [Brucella ceti M490/95/1]
 gi|256254706|ref|ZP_05460242.1| hypothetical protein BcetB_10505 [Brucella ceti B1/94]
 gi|256369121|ref|YP_003106629.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|260168437|ref|ZP_05755248.1| hypothetical protein BruF5_08723 [Brucella sp. F5/99]
 gi|260566735|ref|ZP_05837205.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|261221886|ref|ZP_05936167.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261315100|ref|ZP_05954297.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261317345|ref|ZP_05956542.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261324803|ref|ZP_05964000.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261752012|ref|ZP_05995721.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261754671|ref|ZP_05998380.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|261757899|ref|ZP_06001608.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|265988383|ref|ZP_06100940.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|265997849|ref|ZP_06110406.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|294852048|ref|ZP_06792721.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
 gi|306845287|ref|ZP_07477863.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
 gi|23347486|gb|AAN29615.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161335466|gb|ABX61771.1| permease YjgP/YjgQ family protein [Brucella canis ATCC 23365]
 gi|163673679|gb|ABY37790.1| permease YjgP/YjgQ family protein [Brucella suis ATCC 23445]
 gi|255999281|gb|ACU47680.1| permease YjgP/YjgQ family protein [Brucella microti CCM 4915]
 gi|260156253|gb|EEW91333.1| permease YjgP/YjgQ family protein [Brucella suis bv. 4 str. 40]
 gi|260920470|gb|EEX87123.1| permease YjgP/YjgQ family protein [Brucella ceti B1/94]
 gi|261296568|gb|EEY00065.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis B2/94]
 gi|261300783|gb|EEY04280.1| permease YjgP/YjgQ family protein [Brucella neotomae 5K33]
 gi|261304126|gb|EEY07623.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737883|gb|EEY25879.1| permease YjgP/YjgQ family protein [Brucella sp. F5/99]
 gi|261741765|gb|EEY29691.1| permease YjgP/YjgQ family protein [Brucella suis bv. 5 str. 513]
 gi|261744424|gb|EEY32350.1| permease YjgP/YjgQ family protein [Brucella suis bv. 3 str. 686]
 gi|262552317|gb|EEZ08307.1| permease YjgP/YjgQ family protein [Brucella ceti M490/95/1]
 gi|264660580|gb|EEZ30841.1| permease YjgP/YjgQ family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294820637|gb|EFG37636.1| hypothetical protein BAZG_00964 [Brucella sp. NVSL 07-0026]
 gi|306274446|gb|EFM56253.1| hypothetical protein BIBO1_1972 [Brucella sp. BO1]
          Length = 362

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWEL 210


>gi|328676744|gb|AEB27614.1| Permease YjgP/YjgQ family protein [Francisella cf. novicida Fx1]
          Length = 276

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 10/274 (3%)

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           + +    G + + ++K  L   + L+I   I+   + P  + T+    A        S +
Sbjct: 1   MFVTLAGGITWMQIVKNTLKPVVALTIITLITVMYLNPLSKQTLDIYKASLSAKALLSSI 60

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DTQTHKIYYAQSGSIDLDRQA--II 202
            +    +  D   I I   +  NTL  +F+  +      +K+  A +  I  D+ A  I 
Sbjct: 61  TDQKIIKAPDGKIIYIGNKS-GNTLSDVFLYQNTPQDGEYKVMTAPTAKIVSDKTAAYID 119

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRP 262
             +  ++ K+  + + S    K         +         D+     L  N N+     
Sbjct: 120 FMNVNIYTKNSQNSEYSYDNAKKAIYTIFDNSDRDYNHDRVDRLYMHTLIENFND----K 175

Query: 263 ELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGF 322
                Y++EF  R+   +  ++  L+++     R    +  K+ P  + L+I       F
Sbjct: 176 TNGTAYKAEFFGRINNAISVIVSSLLALALCRLRPRQNKYAKLLPSVVVLAIYLCTNM-F 234

Query: 323 SYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
              +      P +I   +L     +   +  I+K
Sbjct: 235 INTLMANGSVPVWIGF-WLPHIFFTIFAVRTIRK 267


>gi|260466947|ref|ZP_05813129.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259029244|gb|EEW30538.1| permease YjgP/YjgQ family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 360

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 99/340 (29%), Gaps = 46/340 (13%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         +   L ++ + ++I   +     +     +    + ISG  +P ++
Sbjct: 4   TLGRYFFFRYVAITIWFFLGLLALVFLIDFTELSGRTTGLPGFTYGTAMAISGLRMPMIM 63

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               PF         L S+NR  EL+I  + G S    + P    A+L  +      N +
Sbjct: 64  LQTVPFVGLFSAMATLVSLNRRYELVIARSAGVSAWQFLLPCCIGALLFGVVSVGIINPL 123

Query: 122 EPKCRSTIKQLSAKAQLAL-------TFSYLEENLFFRLDDDLYIKISKYNPNN-TLQG- 172
                S  +Q+  + +             ++ +        D  I           +   
Sbjct: 124 AAHAFSLSEQIETQLRSGKSNTVSADAAPWIRQKT---SSGDTIIGARAILNQGLEMSDA 180

Query: 173 -IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE 231
             FI+D +         A+      D     L DG    +   +       F++  +Q+ 
Sbjct: 181 VFFILDQQGN------IAER----KDAVRAYLRDGYWELQDVKT-------FRNGVIQSA 223

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYR-----------PELLETYRSEFHKRLTQWL 280
           + +     LK   + +   L      P Y                  +  +F   +    
Sbjct: 224 ANDRVPTNLKP--EFVQERLARPETIPFYDLPGKIEVARSFGLKANAFAMQFDSLVALPF 281

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFW 320
             V   LI+  A       R  +    I   +   F ++ 
Sbjct: 282 LLVAMTLIA--ATVSMRFARMGQSATMILGGVVAGFLLYV 319


>gi|148560142|ref|YP_001258668.1| hypothetical protein BOV_0678 [Brucella ovis ATCC 25840]
 gi|148371399|gb|ABQ61378.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 362

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 7/206 (3%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y      +  L   L I  +A ++   +  + +++    ++   L +S   +P ++
Sbjct: 5   TLGRYFFTRYVQITLYFLLGIFALALLLDFTENASRLANLPAYTVWAALGLSAMRVPFIM 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF         L S+NR  EL++  + G S    + P  F A+L  +      N +
Sbjct: 65  QQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPL 124

Query: 122 EPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FI 175
                S  ++++A  +        +  +  L  + D+   I  +K   N   TL    FI
Sbjct: 125 AAHGFSKAEEIAAMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
                      Y A++ ++      +
Sbjct: 185 QFDEQKNIKDRYDARTATLQDGYWEL 210


>gi|114569776|ref|YP_756456.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
 gi|114340238|gb|ABI65518.1| permease YjgP/YjgQ family protein [Maricaulis maris MCS10]
          Length = 365

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 74/206 (35%), Gaps = 10/206 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-ESLNILLKISGYLIPTV 60
                Y+        L++ L I  +  ++  +++   V +    S   LL ++    P +
Sbjct: 4   GRLNRYMASQTAGGLLLAFLTIATVIILVDFVEQSRAVGTRVDVSTLDLLGLTLLRAPAL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    PF F   T   L  +NR++EL+++  +G S   ++   + LA+ + I      N 
Sbjct: 64  LESTLPFVFLFGTLTSLFRLNRSSELIVMRASGISAWRILTAPMVLAVGIGIIGATGLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFR--LDDDLYIKISKY--NPNNTLQG-IFI 175
           +     +  +               E+ ++ R    D   +  +         L+  +F+
Sbjct: 124 LAATLNAEFEARRDSLMNVRRVEGAEQPVWLRETNIDGFTVIAATQLEEARQVLRNPVFL 183

Query: 176 VDSRD----TQTHKIYYAQSGSIDLD 197
             + D     +  +   A+S  +   
Sbjct: 184 QFAEDASGTPRLERRIDAESAELRAG 209


>gi|296272453|ref|YP_003655084.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296096627|gb|ADG92577.1| permease YjgP/YjgQ family protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 356

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 133/367 (36%), Gaps = 25/367 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+    Y+LR   R+F++  + +      I  LQ  + V +   S N+ L    Y     
Sbjct: 1   MRIITKYLLRKFIRNFVIVLISLQIFFVGIDFLQNFDEVPN---SANLQLLYILYNSFFT 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L +  P          +  M +  E++   + G     +  PV+ ++I+  + + +    
Sbjct: 58  LTLTLPLSLVFGWIITIVIMVKTNEMVASFSLGVGNRQIFMPVVNVSII--LIVLLIGFQ 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL-QGIFIVDSR 179
           + P   S   +   K      F+  + ++F +  +D ++   K  P     + I I    
Sbjct: 116 MTPLAYS--YEYKEKILKNTYFTSSKSDIFVK-YNDYFVYFKKLYPLQKYAEDIHIYKVV 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI-SKDISIMKFKS----YTLQTESAN 234
           D    +   A+      +R  ++  D  + +K  +   + S ++       YTL+     
Sbjct: 173 DDDIEEGIVAKKAYFQNNRWYVL--DARITKKPKVIDWNNSKIEIHHEKFLYTLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V ++                N +       R+  +  +   L+     LI ++ + 
Sbjct: 231 ILDSVYESTSSFSILDAITALTLLNDQEVNTSKIRASLYYEIVAPLY--FVPLIILIFSY 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ----NPYYIPILYLFLFCISSIF 350
                R          S++ +  + WG  +++HK       NP    +L +FL+ I  I 
Sbjct: 289 TSFNSRFFNIGKFTSFSIAATLVI-WGVFFMLHKFSSGGVINPEISILLPIFLWYI--IT 345

Query: 351 LLMIKKK 357
            ++IKK+
Sbjct: 346 YILIKKQ 352


>gi|255321867|ref|ZP_05363017.1| tRNA-I [Campylobacter showae RM3277]
 gi|255300971|gb|EET80238.1| tRNA-I [Campylobacter showae RM3277]
          Length = 353

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 17/206 (8%)

Query: 1   MKSFELYI----LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           M  +  Y+     +     F+   LF V I  +         +     S N+ L   G  
Sbjct: 1   MNLYARYVGWLYFKYFVILFIALTLFYVGIDILTN-------LKDMPASANLKLLYFGLT 53

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
             T +  V P            SM R+ EL+     G  +  LIKP  ++A+ +++    
Sbjct: 54  SLTAVNYVLPLALIFALITSKFSMIRSNELVSFYALGIDKNRLIKPPFYIALAITLIYVG 113

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
                        + +   + L+ T S +    F +  +  ++ +   NP +   + + I
Sbjct: 114 LNFTPFAYAYEYGRNIVKLSNLSRTSSDI----FLK-FEGKFVYMDSLNPISGEAKDVRI 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAI 201
            D   +      + +SG    D   +
Sbjct: 169 FDIDSSNLRSATFGESGKFIDDAWLL 194


>gi|114328862|ref|YP_746019.1| hypothetical protein GbCGDNIH1_2198 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317036|gb|ABI63096.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 370

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 107/363 (29%), Gaps = 26/363 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS-TESLNILLKISGYLIPTVL 61
           +   YI R    + L+  + +  +  +   ++ +   ++    S  ++  I+   +P + 
Sbjct: 6   TLSSYITRVFLAAALVVLVALTLLVGLFDFIELLRRAATKPDVSFGLVSTIAALRLPWMS 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        + R++EL++    G S    +   +  A LL +      + +
Sbjct: 66  ITILPFAVLLGGIGAFWRLTRSSELVVARAAGISAWQFLALPVGAAALLGMLAMTVISPL 125

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENL---FFRLDDDL------YIKISKYNP-NNTLQ 171
                S  +QL                      + D  L       I   +     N+LQ
Sbjct: 126 SSVMLSRAEQLDNTYLRTSGGPMRLAGGQLWLRQSDPGLDPHGVSIIHAMQVAAHKNSLQ 185

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
                +F +DS D    +   A +  +   +   +L++  V R S +      ++     
Sbjct: 186 ASSITVFRLDSEDRLVQR-IEAATARLVSGQ--WVLDNARVLRPSHLPDPPHTVE---IP 239

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLE-TYRSEFHKRLTQWLFPVIFG 286
                          +  +   L  P+      R       +R  F   L   L      
Sbjct: 240 TDLTVRRIQESFASPDTLSFWSL--PDFIRLLDRSGFSSLRHRLRFQSLLALPLLCATMA 297

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           L++  A       R+      I   ++  F +F          +     + +        
Sbjct: 298 LVA--AGFSMRPSRRGGVAKMIGSGVAAGFCLFVVSKVAEEFGQSGTVPVVLAAWAPSVA 355

Query: 347 SSI 349
             +
Sbjct: 356 GLM 358


>gi|217978371|ref|YP_002362518.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
 gi|217503747|gb|ACK51156.1| permease YjgP/YjgQ family protein [Methylocella silvestris BL2]
          Length = 361

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 117/355 (32%), Gaps = 18/355 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +   Y         L   + I  + +V+  ++ +   +     S   +  ++    P+  
Sbjct: 5   TLGRYFSARFLTLILAVFVTICGMVFVVDFVEMLRRTTDLPDASPRSVALLAMLRAPSAS 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PFC    +      + R  ELLI    G S    + P + +AI++ I   +  N +
Sbjct: 65  EQLMPFCVLCGSMAAFLDLTRKLELLIARAVGVSVWGFLVPPIAIAIVIGIGSVMLFNPV 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFR---LDDDLYIKISKYNPNN-TLQG--IFI 175
               +    ++  +    LT    + +++ R   +D D  IK    + +   L    ++I
Sbjct: 125 SAAMKQRADKIEVEIFGRLTQQNADADIWIRQKSVDGDAIIKARTMSRDGSRLTKPTVYI 184

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
            D  D +      A+   +             +      + + S+     Y L +    +
Sbjct: 185 YDDHD-KFEAEVEAEHAQLSDG--VWRFEQARILMPGEETIETSV-----YLLASNLTPA 236

Query: 236 STIVLKANDQNLSF-LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                  + Q+++F  L+      +        Y+ +F   L + L  +   ++ I AA 
Sbjct: 237 QVARGPISPQSVAFWDLDAARRQTDRAGLDSTAYKLQFQSLLARPL--LFVAMVLIAAAF 294

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                R       +   ++  F ++     +           P+       I+S+
Sbjct: 295 SLRFFRFGGIEKMVGGGVAAGFVLYVATKLVGDLGGAGLVSAPVAAWSPAVIASM 349


>gi|294084201|ref|YP_003550959.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663774|gb|ADE38875.1| permease YjgP/YjgQ [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 368

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 123/360 (34%), Gaps = 20/360 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLIPT 59
            +   Y      R  L+    +  I  VIQ ++ +    V+ S      +  ++   +P 
Sbjct: 8   GTLFRYFAFYYTRWILLCLFGLTVIISVIQSVELMRQKSVNKSDVEEISVSVLAMLNLPN 67

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++ PF   + T     + N++ E ++    G S    + PVL  A+ + +   +  N
Sbjct: 68  IIEVILPFAVLIGTMLCFHAWNKSNEFVVTRGFGQSIWVSLSPVLVSALAIGVLFVMVIN 127

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYL--EENLF-FRLDDDLYIKISKYNPNNTLQGIFIV 176
            I            A     ++ +    E  ++   + D++ I I     N     +   
Sbjct: 128 PIGAVTSKRYNSQMATLNDDISNNLTISESGIWLRDMQDNVKIII-----NGDALDMKTA 182

Query: 177 DSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYTLQTESAN 234
              +   +        +  +  Q+I L          I  D   +  +  ++ + T    
Sbjct: 183 QISNPTIYSFVNGFELNWRVQAQSIQLTQMGWEVVDGIKWDSDGLQNELGTFIIPTNLEA 242

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
                   +  ++S    P+      R  L      E H      +    F L+ I    
Sbjct: 243 VDLTRSGQSPHSISIYALPHFITVLERAGLPTINH-EIHF---NKILAFPFLLVGISMIA 298

Query: 295 KRALVR---QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
            R  VR   + +++  +   L I+  +F  FSY++H +  +     ++  +   I+ + +
Sbjct: 299 TRITVRSINRGRQMKLVIKGLGIATCIFI-FSYLMHVMGTSLTVPALVAGWTPAITVLLI 357


>gi|213163295|ref|ZP_03349005.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 137

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 56/137 (40%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRST 128
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P     
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWSSKH 120

Query: 129 IKQLSAKAQLALTFSYL 145
             ++ A+A+     + L
Sbjct: 121 QDEVLAEAKANPGMAAL 137


>gi|11465471|ref|NP_045138.1| hypothetical protein CycaCp121 [Cyanidium caldarium]
 gi|6466374|gb|AAF12956.1|AF022186_79 unknown [Cyanidium caldarium]
          Length = 397

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 127/382 (33%), Gaps = 37/382 (9%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              + Y+ + +   FL   +  VFI   +  + ++    SS   L I L+I    +P   
Sbjct: 23  TILDSYLFKSLVLPFLFCWVSFVFIELSVGCVNQLMSDLSSGLPLEISLQILLLYLPLYA 82

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               P              N + +LL +  T  S   L + VL     +    +    II
Sbjct: 83  YFALPITSFFSGLISFRIKNYSNQLLGVYITSISFSRLFRSVLIFTSAICGTTWCISEII 142

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEE---NLFFRLDDDL-----------YIKISKYNPN 167
            P   ++++ L  KA L    S   E    +F    +              + I  +N  
Sbjct: 143 IPVSSNSLQVLHRKASLCARNSICSETSSGIFTNYYNSQSKKAPLKELKGVLYIKHFNHL 202

Query: 168 NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYT 227
           N  Q I++ D  +    +++ A S   D   +  +  +  +       +           
Sbjct: 203 NAYQLIYL-DFNNENLKQLFLADSAKFDHFSRNWLFENMHIFSFDYDKELF--------- 252

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEF---------HKRLTQ 278
           + + + N +   L   D  L+ ++N +  +P +          E           ++L+ 
Sbjct: 253 VDSFNINMNLCNLSILDLKLNAVINKSQFSPFWMNAASIKMYKELSHLKTYSKSWRKLSL 312

Query: 279 WLFPVIFGLISIVA----ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPY 334
            L+   F  IS +            R + +    FI + I+F  +         +     
Sbjct: 313 RLYQKYFTPISSIFLYSTGALMGSFRYKTQYLSFFIGILIAFQFYLSTFVTESAVILGII 372

Query: 335 YIPILYLFLFCISSIFLLMIKK 356
            I   ++    ++ I LL++++
Sbjct: 373 PIYFSFIVPTSLTVILLLVLRR 394


>gi|218296646|ref|ZP_03497364.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
 gi|218242959|gb|EED09492.1| permease YjgP/YjgQ family protein [Thermus aquaticus Y51MC23]
          Length = 368

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 122/376 (32%), Gaps = 34/376 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +   ++L+       ++ LF+  I            +      +  +L+   Y +P VL 
Sbjct: 2   TLYRHLLKESLPVLFLTLLFLTAIFLFGFFYAGARWL--EGVPIPKILRWLSYHVPGVLV 59

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
              P      T  V   +        + + G        P+L+L  LLS+     +  + 
Sbjct: 60  QAFPIALVTTTVLVFGRLAAEGAQFALLSGGVPLWRAALPLLWLGALLSVAALYLQEYVV 119

Query: 123 PKCRSTIK-QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYN-PNNTLQGIFIVDSRD 180
           P+  + ++     +        +  + +   +     +    ++     + G+ IV  + 
Sbjct: 120 PEANNRVRVAWWDEIHTQGAGLFRLKGMQIPIGQGRSLYFEDFDMERKEMVGVRIVSFQ- 178

Query: 181 TQTHKIYYAQSGSIDLDRQAIILN---------------DGEVHRKSPISKDISIMK-FK 224
            +     +A+ G+   D + I L                +G     + + +    +   +
Sbjct: 179 GEVGTFLFAERGT--WDDRLITLRGYRFYRVDFREVPGLEGARDLLAQVRRVFRAVSRGE 236

Query: 225 SYTLQTESANSSTIVLKANDQNLSF----LLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
              ++++ + +  I   A+  +              +P   P   +  R EFH +L    
Sbjct: 237 VLEVESDLSRARAIADYADTFSFGQNSLSQAWRKARDPFLPPLERDRARLEFHSKLALP- 295

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
                    ++     A+  +  +   + + LS+   + +  ++ + +       IP   
Sbjct: 296 -----LANLVLVLLAAAMALRYGRSTGLALGLSVVLALGYYGAFFLGRALAGVGAIPPE- 349

Query: 341 LFLFCISSIFLLMIKK 356
           L  +  + +F L+  +
Sbjct: 350 LGAWGANLLFFLLGVR 365


>gi|149194453|ref|ZP_01871550.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
 gi|149135628|gb|EDM24107.1| hypothetical protein CMTB2_07626 [Caminibacter mediatlanticus TB-2]
          Length = 338

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 73/195 (37%), Gaps = 15/195 (7%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST--ESLNILLKISGYLIPTVLPMV 64
           YILR   ++F+++ +    +  ++        + +S+  ++L I      Y+    + ++
Sbjct: 5   YILRNYLKNFVITLIGFALLFVLVDYSFNFAKLPNSSNLQTLYIF-----YVFIDSIFIL 59

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPK 124
            P          L  M +  EL+   + G     ++KP+++ ++   I +   ++     
Sbjct: 60  YPLALVFAFLLTLNKMIKFNELVSFYSLGFKPFKILKPIIYFSLFFFILIMYLQSTKIAY 119

Query: 125 CRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQT 183
                K +    QL     +L+ N       +  + I + NP       + I   +D + 
Sbjct: 120 VNQYAKAIKNNMQLKNKNLFLKYN-------NSVVYIKELNPILKEAYDVKIFVVKDNKL 172

Query: 184 HKIYYAQSGSIDLDR 198
            KI Y +      + 
Sbjct: 173 IKIIYTKKAKFFKNH 187


>gi|213855151|ref|ZP_03383391.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 206

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 166 PNNTLQGIFIVDSRDTQT--HKIYYAQSGSI---DLDRQAIILNDGEVHRKSPISKDISI 220
             +    +F+   R        +  A SG +       Q + LN G     + + +D  I
Sbjct: 5   DGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTALLRDFRI 64

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
             F++Y         +      +  ++  L N + +            R+E H R+T   
Sbjct: 65  TDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDND----------RARAELHWRITLVF 114

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
              +  L+ +         RQ +      +S+  +  ++  F  I   I+ N     +  
Sbjct: 115 TVFMMALMVVP--LSVVNPRQGR-----VLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDP 167

Query: 341 LFLFCISSIFLLMI 354
           +      ++  L +
Sbjct: 168 VIWMWAVNLIYLAL 181


>gi|332674268|gb|AEE71085.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 355

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|218679276|ref|ZP_03527173.1| permease YjgP/YjgQ family protein [Rhizobium etli CIAT 894]
          Length = 312

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 101/311 (32%), Gaps = 21/311 (6%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           + ++   +P +L    PF        VL  +NR  EL++    G S    + P +  ++L
Sbjct: 3   ILMTAVRLPLILQQTVPFIALFVGMTVLIGLNRKYELVVTRAAGISVWQFMSPFIAGSLL 62

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN----LFFRLDDDLYIKISKYN 165
           L I    + N +    +     + +  +                     DD+ I      
Sbjct: 63  LGILTMTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQISGRDDVIIGAHTVQ 122

Query: 166 PNNT--LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKF 223
            N T  +  + I      Q      A +           L DG     + + +    +  
Sbjct: 123 ENGTKLIDAVLIHFDSSGQVILRQDAATAK---------LEDGYWQLNNVVERKPGEIPV 173

Query: 224 KSYTLQTESANSSTIV---LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           +  ++Q  +      V   L A +    F L+             +   ++F+  L+Q L
Sbjct: 174 RKASVQLRTNLKQDFVQERLTAPETIGFFDLSNRIAAAKSFGISTKALETQFNSLLSQPL 233

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             V    I+   + K +   Q + +  I   +   F ++   + ++     +    P + 
Sbjct: 234 LLVAMTFIAATVSLKFSRFNQSRSV--ILGGILSGFVLYVI-TVLVKAFGSSGVVPPFVA 290

Query: 341 LFLFCISSIFL 351
            ++  + ++ L
Sbjct: 291 TWIPVVVALAL 301


>gi|154148833|ref|YP_001406853.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
 gi|153804842|gb|ABS51849.1| permease YjgP/YjgQ [Campylobacter hominis ATCC BAA-381]
          Length = 353

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 128/366 (34%), Gaps = 23/366 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F+ YI     + F++  + + F    I +L  +       +S N+ L          
Sbjct: 1   MKIFQKYIGWTYFKYFVILFVALEFFYVGIDVLTNLKDFP---QSANLGLLYIAITAVAA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +    P            +M RN E +     G  + +LI P   +A+ ++       N 
Sbjct: 58  ITYTLPLSLVFALIIAKFNMIRNNEFISFFALGVPKNSLIIPPFLIALFITFGYISLNNT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSR 179
           I  K     K ++  A L      L         D  +I +SK NP   T + +  +++ 
Sbjct: 118 IFVKAVKFQKNITNFASLNENADDL-----LLKYDGNFIYMSKLNPKEKTAKDVIFLETN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVH---RKSPISKDISIMKFKSYTLQTESANSS 236
            T       ++ G    + +  + +D       +   + +     KF+    +  + + +
Sbjct: 173 GTNLISKAISKKG--VYNDKKWLFSDVNTTFLPQNLRLGEQGLTYKFEKNAQKLNNFDPN 230

Query: 237 TI--VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
           TI  V  ++     +    +      +   ++T ++          FP+    + ++   
Sbjct: 231 TIKNVYDSSQTYTIYEAIKSIKTFKNQGINVQTLKANL---FVMIFFPLFAPFMVLILYY 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISSIF 350
              ++ +   +  +  +  I     WG  +++ +   N   IP    IL +F+    + +
Sbjct: 288 YLPVISRFFNLALLSFAFFIITLCVWGILFVLVRFSLNGVIIPEIGIILPIFVMFCYACY 347

Query: 351 LLMIKK 356
           L +  +
Sbjct: 348 LFLKHR 353


>gi|308183601|ref|YP_003927728.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
 gi|308065786|gb|ADO07678.1| hypothetical protein HPPC_07350 [Helicobacter pylori PeCan4]
          Length = 355

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 119/364 (32%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYT------LQTES 232
              A+        +  IL+D  ++         +       +  FK+        L T  
Sbjct: 178 YAEAKEAFFK--DKYWILHDTTIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|88810917|ref|ZP_01126173.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
 gi|88791456|gb|EAR22567.1| permease YjgP/YjgQ [Nitrococcus mobilis Nb-231]
          Length = 367

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 111/330 (33%), Gaps = 8/330 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK+ E Y++R +   F+++   ++ +   I ++++++                G ++P  
Sbjct: 8   MKTAERYLMRAVAGGFVVAAAVLLPLFSFIDLIEQLDDTGQGNYHSAQAFAYVGLILPRR 67

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + PF   + TT  L  +  + EL  + + G S   +    L   +LL + L   + +
Sbjct: 68  LIELGPFIALLGTTVALGGLASHRELTALRSVGVSPGGIALAALKAGVLLILLLAAIDQL 127

Query: 121 IE-PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFI-VDS 178
           +  P  +      +                 +    D  +++           I I   +
Sbjct: 128 VASPLQQHAFGMRATALSGDSNAESGSGAALWARRGDRLLRVGALRLGRIPADIEIFHFN 187

Query: 179 RDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTI 238
            +    +  +A    I   R    LN   V  K+ ++      +  S   QT    +   
Sbjct: 188 AEGHLVRYIHADYAEI-HHRAPWRLN--TVLVKAFMAGTPVTTRHASMVWQTFLTPAQIG 244

Query: 239 VLKANDQNLSFL-LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           +L+   ++LS + L           +    Y     ++L   L      L+++  +    
Sbjct: 245 LLEKPAESLSPVQLYGYVQYLRSTGQSSAVYAVMLWQKLGLPLTAAAMILLAVPFSIGAP 304

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIH 327
             R       I +      GV+     I++
Sbjct: 305 --RGASIGSRIALGAIAGLGVYLADQIIVN 332


>gi|320088911|emb|CBY98669.1| Lipopolysaccharide export system permease protein lptG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 158

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSY 144
             + P+     +   A+A      ++
Sbjct: 122 EWVAPQGEQMARNYRAQAMYGGFAAF 147


>gi|307638154|gb|ADN80604.1| Permease [Helicobacter pylori 908]
 gi|325996753|gb|ADZ52158.1| Permease [Helicobacter pylori 2018]
 gi|325998348|gb|ADZ50556.1| hypothetical protein hp2017_1432 [Helicobacter pylori 2017]
          Length = 355

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+ F    +S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFF----ISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   +    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|319405492|emb|CBI79111.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 363

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 122/359 (33%), Gaps = 21/359 (5%)

Query: 3   SFELYILRCIGRS---FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y      ++   FL+    +V +    +   ++ L+     +      IS    P 
Sbjct: 5   TLGRYFFMLYLKTTCCFLLGVFILVLLIDFTENFSKLALLPYY--TAKGAFLISLLRTPL 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF        +L S+N+  EL+I  + G S    + P  F A L  +F  +  N
Sbjct: 63  IIQQLFPFIALFSAITMLISLNKRLELVIARSIGISAWQFLTPACFGAFLFGLFSILFIN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGI------ 173
            +     S  +++ A  +       +       L     +  +     + +         
Sbjct: 123 PLAAWSSSQSEKIVAAWRSNNNQISISNTRIPWLTQHTNLGRTTIGAKSIIHKDLSLIDA 182

Query: 174 -FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTES 232
            F+  + +         +   +     A +L +G +++     K  S ++ K++    + 
Sbjct: 183 TFVQYNENATVKNWINTKKAML--TDGAWLLINGTIYKIGQPPKKFSELRIKTH---LKP 237

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
              +  + +        L          R       + + H + +    P++   ++++A
Sbjct: 238 EFLTEYLAEPVTIPFYEL---PKKIAVARSFGYSANKFDMHLQ-SLIALPMLLVAMTLIA 293

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
           A     + +  +   + +   I+  + +  S ++       Y  PI+  ++  I ++F 
Sbjct: 294 ATVSLKIPRFGQSKTLILGGIIAGFILYVISMLVRSFGNAGYIPPIIAAWVPVIVALFF 352


>gi|188528269|ref|YP_001910956.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
 gi|188144509|gb|ACD48926.1| hypothetical protein HPSH_07675 [Helicobacter pylori Shi470]
 gi|308062762|gb|ADO04650.1| hypothetical protein HPCU_07550 [Helicobacter pylori Cuz20]
          Length = 355

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|297380647|gb|ADI35534.1| Hypothetical protein HPV225_1517 [Helicobacter pylori v225d]
 gi|308064258|gb|ADO06145.1| hypothetical protein HPSAT_07215 [Helicobacter pylori Sat464]
          Length = 355

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTTVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|153009929|ref|YP_001371144.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151561817|gb|ABS15315.1| permease YjgP/YjgQ family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 362

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 15/231 (6%)

Query: 3   SFELYIL---RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y       I   FL+    +  +    +   +++ +     S+   L +S   +P 
Sbjct: 5   TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDY--SVWAALGLSAMRVPF 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF         L S+NR  EL++  + G S    + P  F A L  +      N
Sbjct: 63  IMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILN 122

Query: 120 IIEPKCRSTIKQLSAKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI- 173
                  +   ++++  +        +  +  L  + D+   I  +K   +   TL    
Sbjct: 123 PFAAYGFAKADEIASTWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADAT 182

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
           FI           Y A++  +      +     +V R +   +   +  F+
Sbjct: 183 FIQFDEKKNIKVRYDARTAQLKDGHWELT----DVTRFARGEEPQKMASFQ 229


>gi|207091759|ref|ZP_03239546.1| hypothetical protein HpylHP_01146 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 355

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       S  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLKFELGANALNATRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|332088229|gb|EGI93350.1| hypothetical protein SD15574_3352 [Shigella dysenteriae 155-74]
          Length = 238

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 32/236 (13%)

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD 177
               P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  
Sbjct: 1   MYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY- 59

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
           +      +I+ A+S  +                 SP    + +    +Y L  +  + + 
Sbjct: 60  TSTANRTRIFRARSVDVVD--------------PSPEKPTVMLHNGTAYLLDHQGRDDNE 105

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVIFGL 287
            +     +NL   LNP   +PN + +                +E   R ++ L  ++   
Sbjct: 106 QIY----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLTALLMA- 160

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             +  +  R   RQ +    + ++L      + G              IP L+L  
Sbjct: 161 -LLAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVP 215


>gi|254780008|ref|YP_003058115.1| putative permease; putative membrane protein [Helicobacter pylori
           B38]
 gi|254001921|emb|CAX30174.1| Putative permease; putative membrane protein [Helicobacter pylori
           B38]
          Length = 355

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       S  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   +    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|261885753|ref|ZP_06009792.1| YjgP/YjgQ permease [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 253

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 99/268 (36%), Gaps = 28/268 (10%)

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
           +   G     +    +F++ ++S+ + I+  I+ P  +  +     + +       ++ +
Sbjct: 1   MFTLGQDPKNISNFFIFISFIVSVVMLINSLIVMPIAQ-NLNDNFIEYKKTKLSLNIKPS 59

Query: 149 LFFRLDDDLYIKISKYNPNN---TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQA--IIL 203
            F +      + I K N NN     + I + D  D        +QSG I        +IL
Sbjct: 60  EFGQKFGSWMVFIEKQNDNNDSLKYENIVMYDVSDENERL-ITSQSGDIKNQNSNLELIL 118

Query: 204 NDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPE 263
             G+++       +IS   +++  ++T   ++        +  L        ++   +  
Sbjct: 119 KKGKMYDIRDNKWNIS--SYENMVIRTLIKDNKNETYSLKEYWLKAF----SDDKRAKDL 172

Query: 264 LLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFS 323
            + T  +         LFP+   + ++       +  + +K    F    + F     F+
Sbjct: 173 SIYTLVA---------LFPLASVMFALSF---GIVTYRYEKGIIYFGIFGVLFAY---FA 217

Query: 324 YIIHKIEQNPYYIPILYLFLFCISSIFL 351
           +I+    Q  Y IPI+++  F  S++  
Sbjct: 218 FIMLFARQPIYAIPIIFIVSFVFSALTF 245


>gi|217033870|ref|ZP_03439294.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
 gi|216943633|gb|EEC23078.1| hypothetical protein HP9810_870g2 [Helicobacter pylori 98-10]
          Length = 355

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 122/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L++ N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMHQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|330443789|ref|YP_004376775.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
 gi|328806899|gb|AEB41072.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
          Length = 357

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 122/360 (33%), Gaps = 27/360 (7%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           I R +    ++ C   +    +I  LQ I +  +       + +++ Y IP +LP + P 
Sbjct: 9   IFRYLKT--ILFCASSLIFISIISSLQEIVVYIAKDVPYATVFRLAAYQIPYLLPFILPA 66

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRS 127
              +    +   ++ N ++  +  +G S+  +I P+L ++I +    F + + +   CR 
Sbjct: 67  SCFISAYTLFKGLSDNNQITFLRASGASQGIIIFPILTISIAICCANFYTCSELASICRY 126

Query: 128 TIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIY 187
              +  A   ++     L+     + +D        +   +    + +   RD     + 
Sbjct: 127 KSCKEIANMAMSSPPLLLQ--TLQKREDSRVFIAVDHFAKSKFDNVIVALKRDDTISDVG 184

Query: 188 YAQSGSIDLDRQAIILNDGEVHRKSPIS---------KDISIMKFKSYTLQTESANSSTI 238
             ++   D +   +   D     K P S         ++  I   +   +   +A   + 
Sbjct: 185 IIKAIIPDSEADTVQAKDVVYISKLPSSLSTPYTSPAQEYYIETVQELLIPKVTATLFSG 244

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
                 +              YR  + ET R     R    L         IV    +  
Sbjct: 245 KSFMKSRTDYLTWKQLVRQAFYRTYIPETLR-----RAAIGLLCFTLTYSGIVIGTYKPR 299

Query: 299 VRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
            R+   ++  F  L +   +       + K  +  +   + +LF   IS  +L+ I + Y
Sbjct: 300 FRKTHFLYFTFPILDLVLLI-------VGKNTKTTFMAFMFFLFPQIIS--WLVFIYRSY 350


>gi|224534155|ref|ZP_03674735.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
 gi|224514580|gb|EEF84894.1| permease, YjgP/YjgQ family [Borrelia spielmanii A14S]
          Length = 355

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 51/120 (42%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +        S   +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNISFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISVFISVILFFFDNYLV 121


>gi|315585885|gb|ADU40266.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 355

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 122/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F  +    +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTVVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|208435366|ref|YP_002267032.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
 gi|208433295|gb|ACI28166.1| hypothetical protein HPG27_1421 [Helicobacter pylori G27]
          Length = 355

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 120/364 (32%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYT------LQTES 232
              A+      + +  IL+D  ++         +       +  FK+        L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPSSFELGNNALNTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|332086636|gb|EGI91776.1| hypothetical protein SB521682_3570 [Shigella boydii 5216-82]
          Length = 238

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 38/239 (15%)

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVD 177
               P   + I QL  ++Q  L    L    F   D+   I     + +N  L    I  
Sbjct: 1   MYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY- 59

Query: 178 SRDTQTHKIYYAQSGSID---LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESAN 234
           +      +I+ A+S  +     ++  ++L++G                  +Y L  +  +
Sbjct: 60  TSTANRTRIFRARSVDVVDPSTEKPTVMLHNGT-----------------AYLLDHQGRD 102

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLE----------TYRSEFHKRLTQWLFPVI 284
            +  +     +NL   LNP   +PN + +                +E   R ++ L  ++
Sbjct: 103 DNEQIY----RNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLTALL 158

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
             L  +  +  R   RQ +    + ++L      + G              IP L+L  
Sbjct: 159 MAL--LAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVP 215


>gi|289548836|ref|YP_003473824.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
 gi|289182453|gb|ADC89697.1| permease YjgP/YjgQ family protein [Thermocrinis albus DSM 14484]
          Length = 286

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 13/234 (5%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
              R  L+   F+    +++Q+++   L+      +   +               P    
Sbjct: 9   RTIRLSLLVSTFLTLSFFIVQLVKLDKLIFK--LPVFDAVGFMFLWWSYFFVYFIPSSLL 66

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           +     L  +  N +L ++   G S   ++   L     L + + +   ++     ST +
Sbjct: 67  LSWCWNLYELKENKKLHVMQTFGISLGNVLFHTLLRLSPLLLAMAVGAYLLHQSDISTAR 126

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQ 190
            +      +     +    F+    D+   + +    NT + +F+             A+
Sbjct: 127 NILLSKYYSKLLMGIPAGDFYT-AGDVTFYVGERE-GNTWKNVFL-----KTQDLTVVAK 179

Query: 191 SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
              +  D   I+L  G V  +    + ++  +F  Y L+  +   +       D
Sbjct: 180 EAVLHSD--GILLKHGSVLTEKENKRFLA--RFDVYLLRLGTPPGTISQTTTKD 229


>gi|217031844|ref|ZP_03437347.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
 gi|298735532|ref|YP_003728053.1| hypothetical protein HPB8_32 [Helicobacter pylori B8]
 gi|216946496|gb|EEC25098.1| hypothetical protein HPB128_199g52 [Helicobacter pylori B128]
 gi|298354717|emb|CBI65589.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 355

 Score = 61.9 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       S  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   + NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDEINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLSLS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|15646107|ref|NP_208289.1| hypothetical protein HP1498 [Helicobacter pylori 26695]
 gi|2314682|gb|AAD08544.1| predicted coding region HP1498 [Helicobacter pylori 26695]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAIYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|15612456|ref|NP_224109.1| hypothetical protein jhp1391 [Helicobacter pylori J99]
 gi|4156011|gb|AAD06972.1| putative [Helicobacter pylori J99]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   +    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTHLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|317013268|gb|ADU83876.1| hypothetical protein HPLT_07455 [Helicobacter pylori Lithuania75]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+    +   +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFFEY--KYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|317011633|gb|ADU85380.1| putative permease; putative membrane protein [Helicobacter pylori
           SouthAfrica7]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+ F    +S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKRQILNPIFF----ISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYT------LQTES 232
              A+      + +  IL+D  ++         +     + +  FK+        L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTMRLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALFSLHALMRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|109948225|ref|YP_665453.1| hypothetical protein Hac_1758 [Helicobacter acinonychis str.
           Sheeba]
 gi|109715446|emb|CAK00454.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 120/364 (32%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++KP+ F    +S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKCQVLKPIFF----ISLFFTAIYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + DDD Y+   K +P     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYDDD-YVYFGKIDPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVH----RKSPISKDISIM---------KFKSYTLQTES 232
              A       + +   L+D  ++         +  +S M          F+   L T  
Sbjct: 178 YAEANEAFF--EGKHWTLHDATIYSLPLNFDLGNNALSAMHLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+    +    R  L               + P     +S+  
Sbjct: 236 QNKPAVSIMDALFSLHALVRQKADTKKVRSFLY-----------VFAILPFFVPFLSVFI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +L  FLF I S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPELGVLLPFFLFLIIS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|308185268|ref|YP_003929401.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
 gi|308061188|gb|ADO03084.1| hypothetical protein HPSJM_07640 [Helicobacter pylori SJM180]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 124/371 (33%), Gaps = 41/371 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILNPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
           A     + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ 
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 351 LLMIKKKYTKI 361
           L   KK   ++
Sbjct: 345 LWYFKKLNKRL 355


>gi|210135665|ref|YP_002302104.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
 gi|210133633|gb|ACJ08624.1| hypothetical protein HPP12_1476 [Helicobacter pylori P12]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|203284704|ref|YP_002222444.1| hypothetical protein BDU_816 [Borrelia duttonii Ly]
 gi|203288236|ref|YP_002223251.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
 gi|201084147|gb|ACH93738.1| uncharacterized conserved protein [Borrelia duttonii Ly]
 gi|201085456|gb|ACH95030.1| hypothetical protein BRE_819 [Borrelia recurrentis A1]
          Length = 402

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +  +L  +        S+N ++ I    +P    
Sbjct: 49  KVDKIFVNNILLTFLFMNFLFVILIVLFDLLTNLLNYLEHNLSINDIIYIYYLYLPKCFS 108

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N+L +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 109 DGVALSFLFAVSNLLGNLSMRNEIIGLFSCGISIARILRSIIMLSVFVSVILFFFDNYLV 168


>gi|239831520|ref|ZP_04679849.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823787|gb|EEQ95355.1| permease YjgP/YjgQ family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 362

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 15/231 (6%)

Query: 3   SFELYIL---RCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPT 59
           +   Y       I   FL+    +  +    +   +++ +     S+   L +S   +P 
Sbjct: 5   TLGRYFFIRYVQITFYFLLGIFALSLLLDFTENASKLSNLPDY--SVWAALGLSAMRVPF 62

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++  + PF         L S+NR  EL++  + G S    + P  F A L  +      N
Sbjct: 63  IMQQMIPFVALFSAMATLISLNRKYELVVARSVGVSAWQFLLPACFGAFLFGLATIFILN 122

Query: 120 IIEPKCRSTIKQLSAKAQLALT---FSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI- 173
                  +   ++++  +   T    +  +  L  + D+   I  +K   +   TL    
Sbjct: 123 PFAAYGFAKADEIASTWKTGKTTDVSALRDPWLRQKTDEGETIIGAKSILDQGATLADAT 182

Query: 174 FIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
           FI         + + A+   +      +     +V R +   +   +  F+
Sbjct: 183 FIQFDEKKNIRERFDARRAQLRDGHWELT----DVTRFARGEEPQKMASFQ 229


>gi|111115643|ref|YP_710261.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
 gi|110890917|gb|ABH02085.1| hypothetical protein BAPKO_0861 [Borrelia afzelii PKo]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 50/120 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +        SL  +  I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLIFMILIILGDLFVNLLNFLEKNISLKDIFYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     +++P++ +++ +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLV 121


>gi|317181181|dbj|BAJ58967.1| hypothetical protein HPF32_1385 [Helicobacter pylori F32]
          Length = 355

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 120/364 (32%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLKFELGANALNTTHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +    +F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFLVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|317010128|gb|ADU80708.1| hypothetical protein HPIN_07620 [Helicobacter pylori India7]
          Length = 355

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALSTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|108563840|ref|YP_628156.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
 gi|107837613|gb|ABF85482.1| hypothetical protein HPAG1_1415 [Helicobacter pylori HPAG1]
          Length = 355

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       S  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYISFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDRTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLKFELGTNALNATRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFIFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|269963274|ref|ZP_06177606.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831989|gb|EEZ86116.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 235

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 68/201 (33%), Gaps = 26/201 (12%)

Query: 158 YIKISKYNPNNTLQGIFIVDSR--DTQTHKIYYAQSGSIDL---DRQAIILNDGEVHRKS 212
            + I     ++TL  +F+   R  D+    + ++ SG +      RQ I +++G  +   
Sbjct: 27  VVFIDDI-KDSTLSNVFVAQMRPRDSILPSVMFSSSGEVKELSDGRQIITMHEGTRYEGV 85

Query: 213 PISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLL-NPNPNNPNYRPELLETYRSE 271
           P   +  + KF  Y                     + L+ +P+P             ++E
Sbjct: 86  PTRVEYMVTKFDQYEGVIGQREVKQKGRDWEAYPTADLIGHPDPE-----------AQAE 134

Query: 272 FHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
              R++     +   L++++     A+  ++ +   +  ++ I    F   S     +E 
Sbjct: 135 LQWRISL-FVCI--PLLTMLVIPLSAVNPRQGRFAKMGPAILIYLAYFLAISATKSALED 191

Query: 332 -----NPYYIPILYLFLFCIS 347
                     PI  + L    
Sbjct: 192 GAIPATIGMWPINAMLLIVAI 212


>gi|261838772|gb|ACX98538.1| hypothetical protein KHP_1349 [Helicobacter pylori 51]
          Length = 355

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGANALNTTHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|217032588|ref|ZP_03438077.1| hypothetical protein HPB128_159g14 [Helicobacter pylori B128]
 gi|216945724|gb|EEC24349.1| hypothetical protein HPB128_159g14 [Helicobacter pylori B128]
          Length = 249

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 95/264 (35%), Gaps = 19/264 (7%)

Query: 99  LIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY 158
           + K  + L++L+S  L +   I+ P  +S       + +       +    F +   D  
Sbjct: 1   MTKAFVPLSLLVSAILLVFSLILIPTSKSAYYGFLRQ-KKDKIDINIRAGEFGQKLGDWL 59

Query: 159 IKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDI 218
           + + K   NN+   + +  ++         AQ G+I+       LN  + H        +
Sbjct: 60  VYVDK-AENNSYDNLVLFSNKSLSQESFILAQKGNINNQNGVFELNLYKGHAYFTQGDKM 118

Query: 219 SIMKFKSYTL--QTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRL 276
             + F+   L  + +S NS+          L +       N N   +          +R 
Sbjct: 119 RKVDFEELHLRNKLKSFNSNDAAYLQGTDYLGYWKKAFGKNANKNQK----------RRF 168

Query: 277 TQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYI 336
           +Q +   +F L S+       +   R K +  +  +  + GV+     ++H I  + + +
Sbjct: 169 SQAILVSLFPLASVFLIPLFGIANPRFKTNWSYFYVLGAVGVY---FLMVHVISTDLFLM 225

Query: 337 PILYLFLFCISSIFLL--MIKKKY 358
              + F++   S  L    I K+Y
Sbjct: 226 TFFFPFIWAFGSYLLFRKFILKRY 249


>gi|118474677|ref|YP_891476.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
 gi|118413903|gb|ABK82323.1| permease YjgP/YjgQ [Campylobacter fetus subsp. fetus 82-40]
          Length = 353

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 9/202 (4%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK F  Y      + F++  + +      I  L  +     S     I L ++     T 
Sbjct: 1   MKLFSKYTGLVYLKYFIIIFMALELFYIGIDTLTNLKDFPKSANLQLIYLSLTAL---TA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P            +M R+ EL+   + G S+ TLI     ++++++       + 
Sbjct: 58  VNYVLPISLVFALIVSKINMIRSNELVSFYSLGISKNTLILSPFIISLIITCLYIYLSST 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                R   K L        + + +    F +  ++ +I I +  P       I I +++
Sbjct: 118 SFAYARDYQKSLINFQGFNKSSNSI----FLK-YENKFIYIDELYPAIGEANKIKIFETQ 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAI 201
           D        A+    + +   +
Sbjct: 173 DGDIIGQITAKKAKFEDNSWKL 194


>gi|216263485|ref|ZP_03435480.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           ACA-1]
 gi|215980329|gb|EEC21150.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           ACA-1]
          Length = 390

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 3/164 (1%)

Query: 44  ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
                      Y +P V+ +  PF   +     +     + E+L   + G S   L+ P 
Sbjct: 9   VPFFKAFIFIIYSLPMVIALSPPFASLISVILTIHKFKIHNEILAFRSIGISIFDLLIPF 68

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISK 163
             L I++    FIS +I+ P       ++  + +  +    L+     +   DL     +
Sbjct: 69  FKLGIIIVFISFISNDILLPLGSIGRLKIFNEIKEEVPHLVLKPYS-SKQYGDLIFVSGE 127

Query: 164 YNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI--ILND 205
            + N      F  ++R     +I+ A++  I  +   +  ILND
Sbjct: 128 KSENGYKNVTFFDNTRLKGFDRIFMAKNLDIRKENFQVYFILND 171


>gi|257462586|ref|ZP_05626996.1| hypothetical protein FuD12_01959 [Fusobacterium sp. D12]
          Length = 93

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
          MK    YIL+      ++S     FI  +  I+  +  +     S+  + +I  + +P +
Sbjct: 3  MKIINSYILKESRGPIVLSVSIFTFIFLLDIIVTMMESIIVKGISVFDVARILSFYVPPI 62

Query: 61 LPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
          L    P    +      +   R++E + +++
Sbjct: 63 LTQTLPLGLFVGIMITFSKFTRSSEAIAMNS 93


>gi|317014913|gb|ADU82349.1| hypothetical protein HPGAM_07880 [Helicobacter pylori Gambia94/24]
          Length = 355

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+ F    +S+F       +     
Sbjct: 63  ISLLLAMVLFYITFIKSNQYTALLSIGFSKRQILNPIFF----ISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDRTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   +    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTTIYEMPLSFELGANALNTTRLETFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALFSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|327537720|gb|EGF24427.1| hypothetical protein RBWH47_05036 [Rhodopirellula baltica WH47]
          Length = 430

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 4/149 (2%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS---TESLNILL-KISGYL 56
           M   + Y+L    R+  +  L +  I  V      ++ + +     +SL ++L K  G  
Sbjct: 1   MTQIDRYVLILFLRTVCVCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPY 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +  +  M       M        + R  EL    + G S   +++P++  ++ +      
Sbjct: 61  LLLLFDMTGTIITLMAFLFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLA 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           +   + P+ R ++   +      +  + +
Sbjct: 121 NREWVIPRFRDSLTMKAKNLSGDIEQAVM 149


>gi|317182703|dbj|BAJ60487.1| hypothetical protein HPF57_1413 [Helicobacter pylori F57]
          Length = 355

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTTVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK------------SPISKDISIMK-FKSYTLQTES 232
              A+      + +  IL+D  ++              +   K    +K F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGNNALNTTHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   F+F   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|317179675|dbj|BAJ57463.1| hypothetical protein HPF30_1366 [Helicobacter pylori F30]
          Length = 355

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 121/364 (33%), Gaps = 43/364 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGANALNATHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISS 348
           A     + + + +  + +   I   V WG  + + K   +   IP    +   FLF   S
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFLFLALS 344

Query: 349 IFLL 352
           ++  
Sbjct: 345 LWYF 348


>gi|34558361|ref|NP_908176.1| permease [Wolinella succinogenes DSM 1740]
 gi|34484080|emb|CAE11076.1| conserved hypothetical protein-PREDICTED PEMEASE [Wolinella
           succinogenes]
          Length = 355

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 124/374 (33%), Gaps = 37/374 (9%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     ++     + F +  L +      I +L+    +     S N+++    Y     
Sbjct: 1   MSLAFRFLGALYLKYFFILLLALETFFVGIDLLKFAEELP---PSANLVVLFVVYDALYA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  + P    +    +   + R  EL  + + G S+  +  P+L +A+L +    +    
Sbjct: 58  LNFILPIALVLAQILLFVVLLRTNELTALLSIGYSKRQITTPLLGIALLFTFGFIVLNA- 116

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
             P   +  +++          ++  E LF +   D YI   K  P     +G+ +    
Sbjct: 117 -TPFAYAK-ERVDTILDQGYVGNFKRE-LFVK-YHDSYIYFDKIYPLLQKAEGVKVYRLE 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAI----ILNDGEVHRKSPISKDISIMKFK--------SYT 227
             +  +   A+      +   +    ++             ++  + F            
Sbjct: 173 GDRVAQWIEAKEARFVDNHWRLNEAMVMTIPSELTLGGSPLEVEKVDFMEVLEGFRPRIL 232

Query: 228 LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL 287
                 + +  ++ A + ++S LL    N+   R  L            +  LFP    L
Sbjct: 233 DSIYERHGAVSIIDAIE-SMSLLLEQQVNSQKIRGILY-----------SLVLFPFFAPL 280

Query: 288 ISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFL 343
             ++ A    +  +   +  I  +  +   +FWG  + + ++  + +  P    ++ + L
Sbjct: 281 CMVLVAYYMPITMRYGNLAIIVFAAILGVLLFWGLFFALSRLSMSGFIHPEVSLLIPMIL 340

Query: 344 FCISSIFLLMIKKK 357
           +   ++F      +
Sbjct: 341 WTALALFFWRRLAR 354


>gi|296532232|ref|ZP_06894979.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296267439|gb|EFH13317.1| permease YjgP/YjgQ family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 369

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 52/140 (37%), Gaps = 1/140 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES-LNILLKISGYLIPTVL 61
           +   YI R      L     +  +  +   ++ +   ++  ++   ++  I+   +P V+
Sbjct: 6   TLSAYIARRFAGMALAMVAALAALVALFDFIELLRRAATRADAGFALVASIAALRLPYVV 65

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF   +        ++R +EL++    G S  + +   + +A+ +        + +
Sbjct: 66  LQILPFAVLLGGIVAFWRLSRASELVVARAAGVSAWSFLLGPVLVALAMGTLAITVVSPL 125

Query: 122 EPKCRSTIKQLSAKAQLALT 141
                +  ++L A      T
Sbjct: 126 SAAMMARAERLDATYLRNAT 145


>gi|330813915|ref|YP_004358154.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327487010|gb|AEA81415.1| putative permease YjgP/YjgQ family protein [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 375

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 25/360 (6%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTE--SLNILLKISGYLIPTVLPMV 64
           Y  +    S L+  L    ++ +I  +  +  +        + +   ++    PT +  +
Sbjct: 12  YFSKEFIFSLLLVFLVFFSLSLLINSVGELIYLKDKKLENVIWMATILTLAKTPTTIIEL 71

Query: 65  TPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII--E 122
           + F F          + +N E+  +   G S+     P+L  +I+  I        +   
Sbjct: 72  SIFIFLFSGILFFVKIQKNNEVNTMLLAGISK---TLPILIPSIISFICGLFIIFFLTSI 128

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLY-----IKISKYNPNN--TLQGIFI 175
                   +   +   +     +   +     ++       I+  K   NN   L  + I
Sbjct: 129 SSASLNFYEQEKRIYSSNDNLIVMNKMGLWFMENTTSGYNIIRADKIEKNNFNILNNVTI 188

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK------SPISKDISIMKFKSYTLQ 229
            +  D   + +    S  I ++++   LN  +V ++      S    D S+++  S+   
Sbjct: 189 YNL-DQGFNFVKRYDSEKITINQKRWSLNKTQVTQEKKSLSDSKKDNDASLVE-MSFDSS 246

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLIS 289
               +        N  +   +        N R    E  R +FHK L+   +  +F +I 
Sbjct: 247 ININDLKNYFTDVNTVSFWEMFK-TIKTLNSRGYSAEELRVKFHKYLSLPFY--LFAMIL 303

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
           +         +Q      +F    +   +++     I     N   + I       +  I
Sbjct: 304 VSTTFTMGANKQYNTFMYLFFGTILGVCIYFLNDLSISFGLSNKLPLAISVWSPVGLIII 363


>gi|317178203|dbj|BAJ55992.1| hypothetical protein HPF16_1395 [Helicobacter pylori F16]
          Length = 355

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 124/371 (33%), Gaps = 41/371 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAVYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +D     
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKDKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRK-------------SPISKDISIMKFKSYTLQTES 232
              A+      + +  IL+D  ++               + +    ++  F+   L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGNNALNATHLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
           A     + + + +  + +   I   V WG  + + K   +   IP + +    F   ++ 
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLALS 344

Query: 351 LLMIKKKYTKI 361
           L   KK   ++
Sbjct: 345 LWYFKKLNKRL 355


>gi|219684936|ref|ZP_03539877.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
 gi|219671674|gb|EED28730.1| permease, YjgP/YjgQ family [Borrelia garinii PBr]
          Length = 355

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 49/120 (40%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121


>gi|223038562|ref|ZP_03608855.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
 gi|222879964|gb|EEF15052.1| methionyl-tRNA formyltransferase [Campylobacter rectus RM3267]
          Length = 353

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 121/376 (32%), Gaps = 43/376 (11%)

Query: 1   MKSFELYI----LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL 56
           M  +  Y+     +     F+   LF V I  +         + S   S N+ L   G  
Sbjct: 1   MNLYARYVGWLYFKYFVILFVALTLFYVGIDILTN-------LKSMPASANLKLLYFGLT 53

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
             T +  V P            SM R+ EL+     G  +  LIKP  ++A+ ++     
Sbjct: 54  SLTAVNYVLPLSLIFALIASEFSMIRSNELVSFYALGIDKNRLIKPPFYIALTITFVYVG 113

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFI 175
                        + +   + L+ T S +    F +  +  ++ +   NP +   + + I
Sbjct: 114 LNFTPFAYAYEYGRNIVKLSNLSRTSSDI----FLK-FEGKFVYMDSLNPISGEAKDVRI 168

Query: 176 VDSRDTQTHKIYYAQSGSIDLD----RQAIILNDGEVHRKSPISKDISIM-------KFK 224
            D   +      +  S     D    +QA I+N  +  +      DI  +        FK
Sbjct: 169 FDINGSNLRSATFGLSARFVDDLWLVKQAKIVNLPQNIKLGEKGLDIKRLGELKTLENFK 228

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
             T++  +A SS I +      +    N      + +  L            + +  P +
Sbjct: 229 PKTIENAAAESSAITISDAVDYIQAFKNEGIGLNSVKTTLYNLA-------FSPFFAPFM 281

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILY 340
             +I                +       +I+    WG  +++ +  +N    P    +L 
Sbjct: 282 VLIIYYFLPVTGRFF----NLALKSFIFTIASLCVWGALFVMMRFARNGVISPEIGVLLP 337

Query: 341 LFLFCISSIFLLMIKK 356
           + L    + +L    +
Sbjct: 338 VILLGTYAFYLHFKAR 353


>gi|219685681|ref|ZP_03540495.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
 gi|219672797|gb|EED29822.1| permease, YjgP/YjgQ family [Borrelia garinii Far04]
          Length = 355

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 49/120 (40%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDKLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121


>gi|312148449|gb|ADQ31108.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi JD1]
          Length = 355

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +         L  +L I    +P    
Sbjct: 2   KIDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121


>gi|187918662|ref|YP_001884228.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
 gi|119861510|gb|AAX17305.1| hypothetical protein BH0808 [Borrelia hermsii DAH]
          Length = 355

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 50/120 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +  +   +        S++ ++ I    +P    
Sbjct: 2   KVDKLFVNNISLTFLFMNFLFVILIVLFDLFTNLFTYLDHNLSISDIIYIYYLYLPKCFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 62  DGLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVLLFFFDNYLV 121


>gi|119953585|ref|YP_945795.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
 gi|119862356|gb|AAX18124.1| hypothetical protein BT0808 [Borrelia turicatae 91E135]
          Length = 355

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 51/120 (42%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   +  I  +FL      V +  +I +   +        S++ ++ I    +P    
Sbjct: 2   KVDKLFVNNISLTFLFMNFLFVILIVLIDLFTNLFNYLDHNLSISDIVYIYYLYLPKCFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++ ++ L++ +S+ LF  +N + 
Sbjct: 62  DGLALSFLFAVSNLIGNLSMRNEIIGLFSCGISISRILRSIIMLSVFISVMLFFFDNYLV 121


>gi|15595153|ref|NP_212942.1| hypothetical protein BB0808 [Borrelia burgdorferi B31]
 gi|195941982|ref|ZP_03087364.1| hypothetical protein Bbur8_03794 [Borrelia burgdorferi 80a]
 gi|216264628|ref|ZP_03436620.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           156a]
 gi|218249833|ref|YP_002375306.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           ZS7]
 gi|221217616|ref|ZP_03589085.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
 gi|223889339|ref|ZP_03623926.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
 gi|224533064|ref|ZP_03673669.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
 gi|224533456|ref|ZP_03674049.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
 gi|225549381|ref|ZP_03770353.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
 gi|225550246|ref|ZP_03771205.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
 gi|226321273|ref|ZP_03796801.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
 gi|2688753|gb|AAC67159.1| predicted coding region BB0808 [Borrelia burgdorferi B31]
 gi|215981101|gb|EEC21908.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           156a]
 gi|218165021|gb|ACK75082.1| putative permease, YjgP/YjgQ family protein [Borrelia burgdorferi
           ZS7]
 gi|221192562|gb|EEE18780.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 72a]
 gi|223885260|gb|EEF56363.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 64b]
 gi|224512000|gb|EEF82396.1| permease, YjgP/YjgQ family [Borrelia burgdorferi WI91-23]
 gi|224513418|gb|EEF83776.1| permease, YjgP/YjgQ family [Borrelia burgdorferi CA-11.2a]
 gi|225369114|gb|EEG98568.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 118a]
 gi|225370009|gb|EEG99450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 94a]
 gi|226233305|gb|EEH32056.1| permease, YjgP/YjgQ family [Borrelia burgdorferi Bol26]
 gi|312149740|gb|ADQ29811.1| putative permease, YjgP/YjgQ family [Borrelia burgdorferi N40]
          Length = 355

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             +   ++ I  +FL   L  + +  +  +   +         L  +L I    +P    
Sbjct: 2   KIDKLFIKSIILTFLSMNLLFMILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 121


>gi|222824356|ref|YP_002575930.1| hypothetical protein Cla_1363 [Campylobacter lari RM2100]
 gi|222539577|gb|ACM64678.1| conserved hypothetical integral membrane protein [Campylobacter
           lari RM2100]
          Length = 353

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 127/374 (33%), Gaps = 39/374 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  YI     +SF +    + F    I  L   N +     S N+ L    +L  + 
Sbjct: 1   MNVFFRYISSLYLKSFFILFFSLTFFFVAIDFLVNFNKIPK---SANLELLYILFLTCSA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIK-PVLFLAILLSIFLFISEN 119
           +  + P          + +M R+ E + +   G S+  +I  P L+   L   F++I  N
Sbjct: 58  VSYILPLAIVFALILCVFNMIRSNEFVSLYALGLSKNQVIFYPFLW--ALFFCFVYIGLN 115

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
              P   +   +  +        S    N+  +  D+ ++ I +    N+L  + I D +
Sbjct: 116 F-TPFAYAN--EYKSNIIKTGLVSREGGNVLIK-YDNKFVYI-EKTSTNSLYNVKIFDVK 170

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSYT-------- 227
           +    ++  A+      + Q+  L D +      +     + + I  FKS          
Sbjct: 171 NLDIKQLTQAKKAQF--NGQSWELIDVKTIKVPDKLIVSQEGLKIKDFKSIKGLENFSPK 228

Query: 228 -LQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
            L+  S   S      +D   S L+         +     T R+      +    P    
Sbjct: 229 ILERISLVESDPSYSISDALESILIF------AKQDISTNTLRTSL---YSLVFIPFFAP 279

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN----PYYIPILYLF 342
            + +V      +  +   +  +     IS    WG  +++ ++ +N    P +  +L +F
Sbjct: 280 FLMLVIYYYFPITARFFNLAFLAFVFFISVLSAWGLLFLLTRLSENEILLPEFGIMLPIF 339

Query: 343 LFCISSIFLLMIKK 356
           +      +     K
Sbjct: 340 ILICMGSWFYYKNK 353


>gi|32491206|ref|NP_871460.1| hypothetical protein WGLp457 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166413|dbj|BAC24603.1| yjgQ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 352

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 110/253 (43%), Gaps = 16/253 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             + YI   I ++ +++   ++ I+ +I+  ++I  + +S  S+  L+      +P  + 
Sbjct: 4   ILDRYIRSLIFKTTIVALFILLTISGIIKFSEKIQSIDNSYISIFYLISTILLSVPKDIE 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                   +     +  + +N EL+II+++G SRI +   ++   I+      I    I 
Sbjct: 64  EFFNISILIGILWSIGILEKNRELIIIESSGISRIKICILIIKTIIIFLFIYSIILEWII 123

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEE---NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
           P        +  K +    F+++ E   NL+ +++++ +I I K    + +QGI+I +  
Sbjct: 124 P--------IEKKIKSKYFFNFISENKKNLWIKINNN-FILIKKIVDFDFIQGIYIYEFN 174

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESANSST 237
                K   +   +I  +++  I+ D +  + +  +K I I  F    YT        + 
Sbjct: 175 KFNEIKYIKSSKYAIFKNKE-WIMFDVKTIKFN-NNKKIEINSFDKQIYTNIITPKEINL 232

Query: 238 IVLKANDQNLSFL 250
           I+    + ++S L
Sbjct: 233 ILFPTEELSISEL 245


>gi|291277020|ref|YP_003516792.1| inner membrane protein OxaA [Helicobacter mustelae 12198]
 gi|290964214|emb|CBG40063.1| putative integral membrane protein [Helicobacter mustelae 12198]
          Length = 354

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 125/366 (34%), Gaps = 35/366 (9%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y+ R   R  L+    +      I  L+ ++   S   S N+++    Y     L    P
Sbjct: 4   YLGRQFFRFILIVFSALEIFFISIDSLKYLDQFPS---SANLIVLFFAYDFLYALNYTLP 60

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               + T     ++ ++ +       G +R  ++ PV F+++  +              +
Sbjct: 61  ISILLATIIFYLNLVKSNQYTAFLALGYTRKQILAPVFFISLTFTFLYVGLNATPFVYAQ 120

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHK 185
              + + ++      F+ + E+L  + +++ Y+   K  P     + I + +  D Q   
Sbjct: 121 ERAEAIMSQEN----FTNITEDLLVKYENN-YVYFQKLYPLIKRAENIKVFEL-DKQGRL 174

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPIS------------KDISIMK-FKSYTLQTES 232
             +AQ+          +L+   + +    +              + I+K F+   L T  
Sbjct: 175 QSFAQAKDAIFLHNYWVLSHASISKVPEETTLGKAGLEVSEVDKLKILKGFRPKILDTIY 234

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N  ++ +    Q+L  L N + N+   R  L               L P    L SI+ 
Sbjct: 235 QNKPSVSIIDAIQSLIILQNQDSNSEKIRAILY-----------AFILIPFFVPLTSIII 283

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFL 351
                 + +   +  +     +   V WG  +   K+  +    P I+ L  F +  +  
Sbjct: 284 GFYAPTLSRYSNLALLGFMFIVLALVIWGLFFAFGKLSISGLLPPEIMMLIPFGLLCVLS 343

Query: 352 LMIKKK 357
           L   KK
Sbjct: 344 LFYFKK 349


>gi|168704909|ref|ZP_02737186.1| hypothetical protein GobsU_35554 [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 109/367 (29%), Gaps = 21/367 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS----TESLNILLKISGYL 56
           M + +   L    RS+++  + +V +  VI +   ++   +       S   +    G  
Sbjct: 1   MTAIDRMFLWTFFRSYIIVLISLVGLFIVIDLFTHLDAFVNKPGGFVASARHITYYYGNR 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           +P    +   F   +     +  M RN ELL + + G      I+PV   A +      +
Sbjct: 61  VPEYFDLFGNFVTLIAGAFTVAWMQRNNELLPLLSAGVPTRRAIRPVFLGAAVTLALGPL 120

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEE----NLFFRLDDDLYIKISKYNPNNTLQG 172
           ++  + P+    +         A   S +       + F           K      +  
Sbjct: 121 NQEFLIPEVADALTSQRDDPDQAKAQSLMGAYDSSGIHFEGLAG----FRKDKLVKKMCV 176

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDR------QAIILNDGEVHRKSPISK-DISIMKFKS 225
            F   SR    H    AQ       +         +L D      +     +++++    
Sbjct: 177 TFPEHSRSGMVHLT--AQEAVFRPKQGDDPLTGGWLLTDATPDTFTGEIPLNLTVLGTGR 234

Query: 226 YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIF 285
           + ++ + A+   +         +   +      +  P         FH R+T+ L  ++ 
Sbjct: 235 FFVKVQDADYDAVCRGGAWYIYAATSDLQTMLVDPEPRRRGKLAVLFHTRVTRPLVGMVM 294

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            +  +                   I  + +F       Y+  +    P     L + LF 
Sbjct: 295 VVFGLAVILGNPNRHVIISSGLCLIVSAATFLFVIACKYLGDQDVLPPPLAAWLPVILFG 354

Query: 346 ISSIFLL 352
             ++   
Sbjct: 355 PPALVAF 361


>gi|51599060|ref|YP_073248.1| hypothetical protein BG0834 [Borrelia garinii PBi]
 gi|51573631|gb|AAU07656.1| hypothetical protein BG0834 [Borrelia garinii PBi]
          Length = 355

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 50/120 (41%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
             ++  ++ I  +FL   L  + +  +  +   +            +L I    +P    
Sbjct: 2   KIDMLFVKSIILTFLSMNLLFMILIILGDLFVNLLSYLEKNIGFKDILYIYYLYLPKAFS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                 F    +N++ +++   E++ + + G S   +++P++ +++ +S  LF  +N + 
Sbjct: 62  DGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPIILISLFISFVLFFFDNYLV 121


>gi|261840174|gb|ACX99939.1| hypothetical protein HPKB_1402 [Helicobacter pylori 52]
          Length = 355

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 122/371 (32%), Gaps = 41/371 (11%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y  +      L   LF V I      L+  + +     S N+++    Y I   L    P
Sbjct: 10  YYFKYFLIVLLALELFFVGI----DSLKYADKMPD---SANMIILFFTYDILFALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  ++ +   + + G S+  ++ P+     L+S+F       +     
Sbjct: 63  ISLLLAMVLFYIAFIKSNQYTALLSIGFSKCQILSPIF----LISLFFTAIYVGLNATPF 118

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
             +++ +           + E+L  + +DD Y+   K NP     Q I +   +      
Sbjct: 119 VYMEEKTQNLIYKDNSLSVSEHLLVKYNDD-YVYFDKINPLLQKAQNIKVFRLKGKTLES 177

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHR-------KSPISKDISIMKFKSYT------LQTES 232
              A+      + +  IL+D  ++         +       +  FK+        L T  
Sbjct: 178 YAEAKEAFF--EDKYWILHDTIIYEMPLSFELGNNALNTTRLKTFKTLKNFRPKVLDTIY 235

Query: 233 ANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVA 292
            N   + +     +L  L+  N +    R  L               + P     +S++ 
Sbjct: 236 QNKPAVSITDALLSLHALVRQNADTKKVRSFLY-----------VFAILPFFVPFLSVLI 284

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLF--LFCISSIF 350
           A     + + + +  + +   I   V WG  + + K   +   IP + +    F   S+ 
Sbjct: 285 AYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSISGILIPEIGVLSPFFVFLSLS 344

Query: 351 LLMIKKKYTKI 361
           L   KK   ++
Sbjct: 345 LWYFKKLNKRL 355


>gi|320101900|ref|YP_004177491.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
 gi|319749182|gb|ADV60942.1| permease YjgP/YjgQ family protein [Isosphaera pallida ATCC 43644]
          Length = 392

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGY----L 56
           ++  +        +++++    +V +  VI     ++    +   L  +++  G+     
Sbjct: 5   IRILDRQRYWSFVKAYVICFSSLVGLYIVIHAFANVDEFGKAAPGLMGVVRAMGFYYLIR 64

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      +      M     +T M ++ +L+ +   G S    I+PVL  ++L+S+   I
Sbjct: 65  ISQYYDQLCGVIAMMAAIFTVTFMQKDNQLVAMLAAGISTHRAIRPVLVCSVLVSLLAVI 124

Query: 117 SENIIEPKCRSTI 129
           ++ +I P+ ++ +
Sbjct: 125 NQELILPRFQTEL 137


>gi|315638229|ref|ZP_07893411.1| integral membrane protein [Campylobacter upsaliensis JV21]
 gi|315481765|gb|EFU72387.1| integral membrane protein [Campylobacter upsaliensis JV21]
          Length = 350

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 77/209 (36%), Gaps = 13/209 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    +V     I +L     + +S   + + +   G+   + 
Sbjct: 1   MSIFFHFISSIYLKNFFILFFALVGFYCGIDLLLNFKDLPASANLILLYVLFVGF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT-LIKPVLFLAILLSIFLFISEN 119
           +  + P            +M RN E + +   G S+   +I P L+   LL  F+++  N
Sbjct: 58  VTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLW--ALLFCFIYVGLN 115

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
                  +   +           +    ++F + +++ ++ +   +     + + I   +
Sbjct: 116 F---TSFAYANEYKRSILKNGVLNKKSSDIFLKFNEE-FVYVKSLD-EGVAKELKIFSLK 170

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
           D     +  A+    + +  + +L +G +
Sbjct: 171 DGNLSHLIQAKRALFNEN--SWLLEEGNI 197


>gi|213857515|ref|ZP_03384486.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 121

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +R   +S L     ++ I +  ++++ +          N++L + G  +P +  ++ P  
Sbjct: 1   MRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLS 60

Query: 69  FAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
             +     L  +   +E+ ++   G S+  L+K  + LA+   I   ++     P  
Sbjct: 61  LFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMVLALFTGILAAVNVMWAGPWS 117


>gi|188997596|ref|YP_001931847.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932663|gb|ACD67293.1| permease YjgP/YjgQ family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 356

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 138/364 (37%), Gaps = 20/364 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+  + YI + +    L+       ++ +I++++ +    + T   + L       +P  
Sbjct: 1   MRILDAYIYKKLFVYLLIIFPSFSIVSALIELIEILKK--AKTIEFSTLTLYILTKLPEN 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
              + P    + +   +    ++ E+  +   G S   +   ++  +IL+ I   I+   
Sbjct: 59  AYYIIPISLIVASFMFINDSIKSREIYPVILNGISLNYISIRIIIFSILVVILQVINLET 118

Query: 121 IEPKCRSTIKQLSAKAQL---ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVD 177
           + PK     + L  K +          +   ++ ++ ++ ++    ++ N+ +    I  
Sbjct: 119 VMPKTNQIYQTLYLKLKNQQEDEKVKGIAYKMWLKIGENQFLYFDFFDLNSKVGKKLIFI 178

Query: 178 SRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKS--YTLQTESANS 235
           S D + + IY  ++    +    I +++G + + + +  +I + KF      +  +  N 
Sbjct: 179 SFDKEFNPIYRLEAEDFKVSLDKIEVSNGRLIKINSLD-NIIVEKFDKKILDINIDVENI 237

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
             I+L     ++S L      +  Y  E    + S+F+++L   + P +  +  +     
Sbjct: 238 KKIILAKKPVSISELYKIASISQAYGYESY-YFWSKFYEKLATVIAPFVLTVFILGFI-- 294

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIE---QNPYYIPILYLFLFCISSIFLL 352
                          S  ++   +W  + +I  +      PY+    +  +F +   ++L
Sbjct: 295 ------WTNNKLYITSGFLATVFYWYGTSLISAVAEVGNIPYFSIFFFDVVFLVIGFYML 348

Query: 353 MIKK 356
             KK
Sbjct: 349 NSKK 352


>gi|296120596|ref|YP_003628374.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
 gi|296012936|gb|ADG66175.1| permease YjgP/YjgQ family protein [Planctomyces limnophilus DSM
           3776]
          Length = 373

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 128/382 (33%), Gaps = 42/382 (10%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTES------LNILLKISG 54
           M +F+ Y+L+     F +  +    +   I +L+ ++    + +S      L  +    G
Sbjct: 1   MWTFDQYLLKNFFYVFFVCFVAAFGLVVTIDLLENLDEFMLNNQSGGALSLLVSIGTYYG 60

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
           Y     L         +    VL    R+ EL  +   G     +++ ++   +L++  L
Sbjct: 61  YQAIFFLDRGGASLMVIAVMVVLVLFQRSGELHPMLAAGVPMYRVLRALMIGPVLVTAVL 120

Query: 115 FISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT----- 169
             ++ ++ P            A  A     ++     +++  +Y   +K + N       
Sbjct: 121 VANQELVVP----------VIAHAAHGGRGIQTGEGGQVEP-IYDYSTKISINGEKVSLA 169

Query: 170 ---LQG--------IFIVDSRDTQTHKIYYAQSGSIDLDRQAII--LNDGEVHRKSPISK 216
              L+G        + + D    +     + ++     D   I       E    +P  +
Sbjct: 170 DSQLEGAQFVLPAPLIVHDLTIIRGTTAIFRKAAGQRPDGWVIFGAAPQFEELALTPRGQ 229

Query: 217 DISIMKFKSYTLQTESANSSTIVLKAND----QNLSFLLNPNPNNPNYRPELLETYRSEF 272
           +I     +S  L   S  S   + K        + S LL     N  Y P  ++ + ++ 
Sbjct: 230 EIVRKVGRSGELFIASPVSCDQLFKRKSSSNYLSTSELLGR-IRNEAYGPLAVQKFVTQV 288

Query: 273 HKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
           H RLTQ L  +I  L+S+    +R             ++  I FG+    +Y+       
Sbjct: 289 HGRLTQPLINLIAVLLSLPLLVRRESAGLVMDSGVCAVAQGILFGMMQLSAYL--STSGI 346

Query: 333 PYYIPILYLFLFCISSIFLLMI 354
                  +  +F   ++     
Sbjct: 347 IAADLAAWFPVFIGGAMAAWTR 368


>gi|152990135|ref|YP_001355857.1| hypothetical protein NIS_0386 [Nitratiruptor sp. SB155-2]
 gi|151421996|dbj|BAF69500.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 343

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 123/333 (36%), Gaps = 25/333 (7%)

Query: 32  ILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
            L    +  S   S N+ +    Y     + ++ P         +   + R+ EL+ I  
Sbjct: 27  SLDYFQVFKSLPASANLQILYLYYKSLNAIDLLFPITLIFALIALKNRLIRSNELVAIYA 86

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
            G S+  ++ PV   ++LL+I              +   + +   +   + S   ++LFF
Sbjct: 87  LGYSKRGVVMPVFLTSLLLTILYLFLHL----TSFAYADEYANNIKKYQSLSSATKDLFF 142

Query: 152 RLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRK 211
           + ++D       Y  N   QGI + +  + +  KI +AQS +    +++  L+D  +   
Sbjct: 143 KYNNDYVFFEKLYPLNKRAQGIKVYELENQKLQKIIFAQSATFQ--KRSWHLSDATIVEV 200

Query: 212 SPI-----SKDISIM-KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELL 265
           S         D+SI+  +K   L +     S+I L    + +  L   + N    +  + 
Sbjct: 201 SDGKLIERKADLSILQNYKPKILDSVYEGKSSITLIDALEAIKLLKQQSLNVDRIKAII- 259

Query: 266 ETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYI 325
                       Q LFP     + I+      +  +   ++      +++  + WGF + 
Sbjct: 260 ----------FYQLLFPFFAPFLMIIIYYFVPVTARITNLNLFLFGATVTSLIVWGFLFT 309

Query: 326 IHKIEQNPYY--IPILYLFLFCISSIFLLMIKK 356
           + K+  N        +   +  +  I L + KK
Sbjct: 310 LVKLAFNGSLDAWYAIVFPISLLLVIALYLYKK 342


>gi|119383652|ref|YP_914708.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
 gi|119373419|gb|ABL69012.1| permease YjgP/YjgQ family protein [Paracoccus denitrificans PD1222]
          Length = 373

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 16/215 (7%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R   R  +M       I ++I I+++I   S     L+    +S   I     
Sbjct: 2   ILSTYVARRFLRMLVMIAAIFGAILFLIDIVEQIRRFSDENIGLSGAAGLSLLNITASFY 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            + P    +    +  +++R++EL+ I  +G S I ++      A L  +      N + 
Sbjct: 62  SILPLITVLAGIALFLNLSRSSELVAIRASGRSGIRVLAAPAVTAALAGMLAVAVLNPVV 121

Query: 123 PKCRSTIKQLSAKAQLA--------------LTFSYLEENLFFRLDDDLYIKISKYNPN- 167
                      A+ +                                 + I+ S+ +P+ 
Sbjct: 122 AATTKRYDDAVAQMRSGGGQTVSVGDNAVWLRQALPTRNGNGDETSGQVVIRASRASPDA 181

Query: 168 NTLQGI-FIVDSRDTQTHKIYYAQSGSIDLDRQAI 201
            TL    F+V + DT   +   A +  +      +
Sbjct: 182 TTLYDATFMVFAPDTGPTRRIDAATARLTQGAWEL 216


>gi|289678195|ref|ZP_06499085.1| permease YjgP/YjgQ [Pseudomonas syringae pv. syringae FF5]
          Length = 95

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%)

Query: 6  LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
           Y+ R +  +       ++      + ++ +   +S      +L  I G+ +P  L ++ 
Sbjct: 5  RYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVIL 64

Query: 66 PFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
          P    +        +   +E+ ++  TG S
Sbjct: 65 PLGLFLGILMAYGRLYLESEMTVLAATGMS 94


>gi|195952581|ref|YP_002120871.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
 gi|195932193|gb|ACG56893.1| permease-like [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 130/358 (36%), Gaps = 19/358 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            +I +    +  +  L I+ + ++ QI      ++   +S  IL +     +P VL    
Sbjct: 4   RFITKRFLFTIFLVYLSILALFFIYQISNFF--ITYHMKSPKILFQTILNFLPIVLFYTA 61

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
               ++    +   + R    L+  + G     + KP + +++L+S    +      P  
Sbjct: 62  TINVSISVFVLSHYLKRIKMFLVPQSFGIPISHIFKPFIIVSLLISFGNLMLNEFFIPNA 121

Query: 126 RSTIKQLSAKAQLA-LTFSYLEENLFFRLDDD---LYIKISKYNPNNTLQGIFIVDSRDT 181
              +K +    +        +  NL+   + +    +I  S    N     I I++ ++ 
Sbjct: 122 TKELKYIEHVYKKNQKYELGIARNLWIAKEKNNEKTFIGTSLATSNGLFYNIKIINVKNN 181

Query: 182 QTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTE--SANSSTIV 239
           + + I  A+   +      + L  G     SP       + F++  L+TE    + +  +
Sbjct: 182 KFNYIIKAKKAIVKNG--YMDLEQGIETSFSP----FREIHFQTLHLKTEINPKDLNLWI 235

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
              ++Q+L+ L+             +  Y S F  +L     P +   I+     K    
Sbjct: 236 KTPDEQSLTELVKTAIVM-RKEGLNMFPYISTFIFKLEFSFLPFLMVCIASFYIAKSQNT 294

Query: 300 RQRKKIHPIFISLSISFGVFWGFSY-IIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
               K      SL   FG+     Y +  KI  NP +  ++Y+F+   +   +  I++
Sbjct: 295 IDWYKAFLWHASL---FGIGIVIPYSLSSKINMNPLFFVVIYVFMSFYALKRVFDIQR 349


>gi|32266995|ref|NP_861027.1| hypothetical protein HH1496 [Helicobacter hepaticus ATCC 51449]
 gi|32263047|gb|AAP78093.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 359

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 118/354 (33%), Gaps = 34/354 (9%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           F +  L +      I +L+ ++ +     S N+L+    Y     L    P    + +  
Sbjct: 14  FFIIFLGLEGFFLAIDMLKYVDELPD---SANLLILFLFYNGIFALTYTLPISLVLCSIL 70

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
              +  ++++L  +   G S+  ++ P+L ++ +                +   + +  +
Sbjct: 71  FYMAFLKSSQLTALMALGYSKRQILAPLLVISSVFIGGFIGLNTTSFAYAKEYAESIIYQ 130

Query: 136 AQLALTFSYLEENLFFRLDDDLYIKISKYNP----NNTLQGIFIVDSRDTQTHKIY-YAQ 190
                      ENL  +  D+ YI I K  P        +GI +         K Y  AQ
Sbjct: 131 QNTQNA----RENLLLK-SDNQYIFIRKLYPLLNEQARAEGIKVFTLDGEHKLKNYHEAQ 185

Query: 191 SGSIDLDRQAII----------LNDGEVHRKSPISKDISIMK-FKSYTLQTESANSSTIV 239
               + +   +           L  GE   K   S +I I+K F S  L+T + +  T  
Sbjct: 186 EAFFENNVWILKNVKSLEIASSLTLGEKALKITTSGEIEILKDFSSKVLETIAQDKPTAS 245

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           +     +L      N ++        +  RS  +  L    F  +   I+I++    +L 
Sbjct: 246 VIDAIASLRIAHKQNVSS--------DKIRSILYALLVIPFFVPLC--IAIISYYIPSLP 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           R        F+ +  +  V+  F  +         Y  I  L    I  +  L 
Sbjct: 296 RYGNLTFISFVCIIGALAVWGLFFSLSQLSVAGLIYPEIGLLLPMGILFVVFLW 349


>gi|326561252|gb|EGE11611.1| putative ABC transporter permease protein YjgP/YjgQ [Moraxella
           catarrhalis 46P47B1]
          Length = 120

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y++R    +   + + +  +  V   L  ++ + S T +L   L    Y  P  L 
Sbjct: 5   ILPKYVIRSALLAMAGAVVGLWLVQMVFAYLAELDNI-SETYTLTDALLFILYRSPYFLV 63

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
              P    +     L  +  ++EL+++   G S   ++   +  A++         +
Sbjct: 64  QFIPTGTLLGAVIGLGLLANHSELIVMRAAGMSIYRIVSWAMLPAVIFVAISLGVNH 120


>gi|289668602|ref|ZP_06489677.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 212

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 129 IKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRDTQTHKIY 187
            + +   A  ++  + LE   F  L     + +   + +   L  +F+   +      + 
Sbjct: 2   AEAMLEDANRSVLMAGLESGQFTPLSGGGVVYMQTISADGKGLGKVFMQ-RQQNDRINVV 60

Query: 188 YAQSGSI---DLDRQAIILNDGEVHRKSPISK--DISIMKFKSYTLQTESANSSTIVLKA 242
            A  G++       + + L+DG            D  +MKF S  +              
Sbjct: 61  TADRGAMFFEGKTDRYLRLDDGYRTEGPAGGATLDYRLMKFASSDIALPDRTRVHDANDP 120

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKR 275
                + LL+          +   T R++ H+R
Sbjct: 121 EVMWTTQLLS----------DERPTARAQLHER 143


>gi|153951775|ref|YP_001398642.1| hypothetical protein JJD26997_1652 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939221|gb|ABS43962.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 352

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 104/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E +     G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSFYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DFNLSSFVSAKNAHF--EGESWILRDGNIALLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFIFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  +   V+     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAFVTFIAFVVILMVWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|260891451|ref|ZP_05902714.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
           F0254]
 gi|260858834|gb|EEX73334.1| hypothetical protein GCWU000323_02662 [Leptotrichia hofstadii
           F0254]
          Length = 222

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 146 EENLF-FRLDDDLYIKISKYNPNN-TLQGIFIVDSRDTQ-THKIYYAQSGSIDLDRQAII 202
           EE +F    +      I + N    T +   I++ R       ++ A++   D     + 
Sbjct: 3   EEKVFLTNEEKGFGFYIDEVNNEKATAKNFLIINKRGNNPYPIVFLAENAKFDPGIIRLK 62

Query: 203 LNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN-DQNLSFL---LNPNPNNP 258
              G    K   S+  ++ + +   + T    +   V K+  + N+  L      N  NP
Sbjct: 63  KVKGYAFDKDGNSQVSALYQEQEIPITTFFRENKKEVKKSRKEMNIKELNEFYKQNIKNP 122

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
             + E     + E ++RL   + P     +  +        R+  +     ISL + FG 
Sbjct: 123 EEK-ETALKAQVEIYQRL---IGPFASTFLCWLGVLLSVGHRRSGRGISFGISLIVIFGY 178

Query: 319 FWGFSYI-IHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
               SY  I  ++ N      +++  F +  + +    KKY
Sbjct: 179 IGMASYAKIMVLKNNVPANIAMWVPNFVLFIMCIYFSIKKY 219


>gi|297170536|gb|ADI21564.1| hypothetical protein [uncultured verrucomicrobium HF0070_35E03]
          Length = 324

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 100/335 (29%), Gaps = 58/335 (17%)

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           M  PF F +    ++     + E+L   + G   + L+  V+    L+S+    S     
Sbjct: 1   MALPFGFVVSVVFLIGKWVADGEILAYRSLGGDVLALLWVVMLFGTLISVISTYSSLEWS 60

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP---------------- 166
           P  RS   QL  +     T   LEE    R +        + +                 
Sbjct: 61  PVNRSKFDQLKNEILWTQTNLLLEE----RGEIGFAFHSDEQSKTSEKLNALAGERIRGA 116

Query: 167 --------NNTLQGIFIVDSRDTQTH--KIYYAQSGSIDLDRQAIILNDGEV-------- 208
                   ++  + + IV S         + +A+   ++  +       GE+        
Sbjct: 117 SLSVFDASDDLWKNLRIVLSGGPNEEVLVVIHARKAFVEKRKD-----KGELVLDLLDVD 171

Query: 209 ----HRKSPISKDISIMKFKSYTLQT-ESANSSTIVLKANDQNLSFLLNP--NPNNPNYR 261
                     +     + F+ +        N             + LL+      +P +R
Sbjct: 172 LEYGFSTGEKAAGGQFLSFERWKEPIVFQINQEARPKGVKRMGFTELLSAIERSEDPQFR 231

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG 321
            E +        K L+    P     + I+      L  + + +  + + L+I  G +  
Sbjct: 232 NEGISLLS----KNLSFGTSPF---FLGILLVPIGILAGKSESLINLSLGLAIGLGFYAM 284

Query: 322 FSYIIHKIEQ-NPYYIPILYLFLFCISSIFLLMIK 355
              +   + + +  +       + C     +LMI+
Sbjct: 285 GLLLSGLMGKHDLGFAGWWAPNIVCFLLGMILMIR 319


>gi|205356037|ref|ZP_03222805.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205346161|gb|EDZ32796.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 352

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 107/354 (30%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAHF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +T +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        F++  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAIVTFVAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|315057734|gb|ADT72063.1| Permease YjgP/YjgQ [Campylobacter jejuni subsp. jejuni S3]
          Length = 352

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAYF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|157414610|ref|YP_001481866.1| hypothetical protein C8J_0290 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385574|gb|ABV51889.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315931610|gb|EFV10576.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 352

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAHF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|57168449|ref|ZP_00367583.1| probable integral membrane protein Cj0313 [Campylobacter coli
           RM2228]
 gi|57020257|gb|EAL56931.1| probable integral membrane protein Cj0313 [Campylobacter coli
           RM2228]
          Length = 352

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 123/357 (34%), Gaps = 20/357 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +  L ++     I +L   N +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P          L SM R  E + +   G S+  +I      A+            
Sbjct: 58  VTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
                    + +             +    F   ++ +I ISK N    T Q I I + +
Sbjct: 118 PFAYANDYKRNIL-----KNGTMLKQSGEVFLKFNNEFIYISKVNNGQSTAQNIKIFNIK 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A+SG    +++  IL +G +          +K ++I +FK   TL+     
Sbjct: 173 DLNLSSFIEAKSGIF--EKKNWILKEGNLTLLPKEYELGNKGLNISEFKELNTLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++  +L  +      +   +E+ +   +K +    F     LI      
Sbjct: 231 IIEGVASDSDYSILDILE-SLELFKTQNISIESLKISLYKLVFMPFFAPFLMLIMYYFFP 289

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFL 351
              ++ +   +  +     +   + WG  +++ ++ +N   +  L + +  +  IFL
Sbjct: 290 ---VIARFFNLAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIVMPIVLLIFL 343


>gi|289668601|ref|ZP_06489676.1| YjgP/YjgQ family permease [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 129

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 55/127 (43%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M   + Y+L    +SFL + + ++ ++    ++  +  ++       +LL   G      
Sbjct: 1   MPKLDRYLLSDFTQSFLATLIVLLVVSVGGVLVDILGNIADGRIPARLLLSQVGLQFVAY 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           LP++ P    +     L  + R++E+ +I   G     +++P+L L + + + + +    
Sbjct: 61  LPIILPLALMLGLLLALARLYRDSEMAVITAIGVGPKRMLRPMLMLVVPVVVVIGLCSLW 120

Query: 121 IEPKCRS 127
           + P  R 
Sbjct: 121 LGPWARR 127


>gi|283955738|ref|ZP_06373229.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792693|gb|EFC31471.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 352

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCVYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAHF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAIVTFIAFVVTLMIWGILFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|114768925|ref|ZP_01446551.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
 gi|114549842|gb|EAU52723.1| permease, YjgP/YjgQ family protein [alpha proteobacterium HTCC2255]
          Length = 366

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 128/369 (34%), Gaps = 24/369 (6%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
           +  +Y  +    SF+   L IV +  +   L  +N ++     +   L +S     T L 
Sbjct: 2   TLAIYFGKRYLISFIRVFLSIVLLVLLFDFLTNLNRLNGIEAQIWNALILSLLRTTTYLS 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           +  P    +       S++R+ E +++  +G S +  + PV+  A  L +      + + 
Sbjct: 62  LAMPLIIMLSALAFSVSLSRSNEFIVLRASGVSALKGLFPVISSAFFLGLISIFMLDPLA 121

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK------------ISKYNPNNTL 170
            K          K +       L        D+  +++            ++  N    L
Sbjct: 122 GKMIGYYNIKLDKLRSKEQSQVL------INDNGYWMRQATLNGHQIIKAVNVSNNGQRL 175

Query: 171 QGIFIVDSRDTQ-THKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM--KFKSYT 227
             + I +  +     + ++++S ++  +   ++L +      + I K+  I   K K   
Sbjct: 176 HQVTIFNYDENGLVTERFFSESAALGNNE--LLLTNAIKWSDTKIKKNPIIANEKIKKLK 233

Query: 228 LQTESANSSTIVLKANDQNLS-FLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG 286
           ++TE   +  +   A+ + +S + +N            +  Y+S+  ++  +    ++  
Sbjct: 234 IKTEITPTQLLDGYASPETISPWNMNKQIQKVKSSGFSVLKYQSKKMEQYARPFLFIVMV 293

Query: 287 LISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCI 346
           ++  V   + +  R       + ++       F  F   + +  + P  I      L   
Sbjct: 294 VLGTVFTLQNSRARNVGISVVLAVASGFFLHFFQNFCTTLGRSGEIPLIIATWSPILSIG 353

Query: 347 SSIFLLMIK 355
                L + 
Sbjct: 354 LIAMTLFLH 362


>gi|57242053|ref|ZP_00369993.1| probable integral membrane protein Cj0313 [Campylobacter
           upsaliensis RM3195]
 gi|57017245|gb|EAL54026.1| probable integral membrane protein Cj0313 [Campylobacter
           upsaliensis RM3195]
          Length = 350

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 11/208 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    +V     + +L     + +S   + + +   G+   + 
Sbjct: 1   MSIFFHFISFIYLKNFFILFFALVGFYCGVDLLLNFKDLPASANLILLYVLFVGF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  + P            +M RN E + +   G S+  +I      A+L           
Sbjct: 58  VTYILPISLIFALVLSFLTMIRNNEFVSLYALGLSKNRVIIYPFLWALLFCFIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
                    + +     L    S +    F + +++ ++ +   +     + + I   +D
Sbjct: 118 SFAYANEYKRSILKNGVLNKKSSDI----FLKFNEE-FVYVKSLD-EGLAKELKIFSLKD 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                +  A+    + +  + +L +G +
Sbjct: 172 GNLSHLIQAKRALFNEN--SWLLEEGNI 197


>gi|33519520|ref|NP_878352.1| putative inner membrane protein [Candidatus Blochmannia floridanus]
 gi|33517183|emb|CAD83565.1| putative inner membrane protein; predicted permease [Candidatus
           Blochmannia floridanus]
          Length = 360

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 120/358 (33%), Gaps = 8/358 (2%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
              E YI + +  +  M  L  + ++ +I+++  +      T S+  +       I    
Sbjct: 5   NILERYIKKYVLLNIFMIFLIFISLSSIIRLVDELRNFQKQTYSVFEIFFCIFLNIIKDF 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            +       +     L  +    EL+I+   G S + +   V+  +I + +   I    +
Sbjct: 65  ELFLSLSTLLGGVLGLGILELRNELIIMKVFGLSNLQINLSVIKTSIFIVLLYVIYNIWL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLE-ENLFFRLDDDLYIKISKYNPNNTLQGI-FIVDSR 179
            P  +  +       Q  +     + +NL+     + +I ++       L GI     + 
Sbjct: 125 LPYSQYLLCSHQHYKQYNVYLFPEKNKNLWLMDSGNSFIHVNYMLTTQDLLGINLYHFTE 184

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS--ST 237
           + Q  +I Y +  +   +  ++   +     +          K  SY   T    +  S 
Sbjct: 185 ERQLKRIIYIEKATYIDNSWSVSNIN---ELEFVDKMQFLNRKILSYEWNTTLTPAILSM 241

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I +  +  ++S L+       +   +  + Y+  F  ++   +F V+   I+++ +    
Sbjct: 242 ITVNPHFLSISKLIC-CIKYFDVLGQNSKYYQLIFWDKIFSPIFGVMMLTIALLYSYGPF 300

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
             ++          +   F V      I+  +      +  + L +  +    + +  
Sbjct: 301 YKKKISFRLFFGGIIGFVFYVLHQIFEILSIVYNITPIVGSIILIMLFLMINTIFLRN 358


>gi|218659050|ref|ZP_03514980.1| putative permease protein [Rhizobium etli IE4771]
          Length = 272

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 26/248 (10%)

Query: 55  YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFL 114
             +P  L    PF        VL  +NR  EL++    G S    + P +  ++ L +  
Sbjct: 1   MRLPLNLQQTIPFVALFVGMTVLIGLNRKYELVVTRAAGISVWQFMFPFVAGSLALGVLT 60

Query: 115 FISENIIEPKCRSTI-------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN 167
             + N +    +          +  +A  + A    +L +       DD+ I       N
Sbjct: 61  TTALNPLAAWGQRQALLVESDWRGENAVLRKAPQIPWLRQ---ISGRDDVIIGAQTVQEN 117

Query: 168 NT--LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPI----SKDISIM 221
            T  +  + I      +      A +  ++     +   +G V RK          + + 
Sbjct: 118 GTKLVDAVLIHFDSSGRVIMRQDAATAKLEDGYWQL---NGVVERKPGEIPLRKASVQLR 174

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
                    +       +          L N      ++     +   ++F+  L+Q L 
Sbjct: 175 T------NLKQDFVQERLTAPETIGFFDLSNRIAAAKSF-GISTKALETQFNSLLSQPLL 227

Query: 282 PVIFGLIS 289
            V   LI+
Sbjct: 228 LVAMTLIA 235


>gi|57237364|ref|YP_178377.1| hypothetical protein CJE0358 [Campylobacter jejuni RM1221]
 gi|57166168|gb|AAW34947.1| membrane protein, putative [Campylobacter jejuni RM1221]
          Length = 352

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAYF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        F++  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAIVTFMAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|262277385|ref|ZP_06055178.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
 gi|262224488|gb|EEY74947.1| putative permease, YjgP/YjgQ family [alpha proteobacterium HIMB114]
          Length = 365

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 122/364 (33%), Gaps = 21/364 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLI---P 58
           ++   Y+++    S ++  +    +  +   +Q I        S N LL++        P
Sbjct: 7   RTLIKYLIKEFSFSLMIFTVIFSSLIILTTFIQEITFFQEKEVSDNFLLRMLLLTFIKSP 66

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           T++   + F F            +N E++ I  +G S   +       +  L I + I  
Sbjct: 67  TLIINSSSFIFLFAGIFFYVKFMKNNEIVPISLSGFSMNFITLVPGIFSFFLGIVIIIIF 126

Query: 119 NIIEPKCRSTIKQLSAK-AQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-----TLQG 172
           + I  +     + +    ++           ++ +   +  I I + +  +      L+ 
Sbjct: 127 SPISSELSKYYESIKKNYSKNDNLIVMSATGIWIKEKKNDNIYIIRADKLSGNDFAKLKN 186

Query: 173 IFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTL--QT 230
           I I      +  +     +G I  +   I          + +  D+  +   SYT   + 
Sbjct: 187 ISIYTFSMNKFKERINGDNGIIVKNNLKIT--------PANLVSDVRNISLNSYTYISKI 238

Query: 231 ESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISI 290
              N     + A+  ++  + N   N+        E    +FHK L+         ++S 
Sbjct: 239 NLENIKNYFVNADTFSIWSVKNAL-NDVRKMGYFGEEIIIKFHKYLSLPFLLFAMIVLST 297

Query: 291 VAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI-LYLFLFCISSI 349
               K            + I   I    F+  S  + K  + P  + + + + L  + SI
Sbjct: 298 FFTIKMNFTFNNFIYAFLGILTGIIVYFFYDLSIAVGKSGKLPLILSVWMPVILINVFSI 357

Query: 350 FLLM 353
           ++L+
Sbjct: 358 YILI 361


>gi|121612521|ref|YP_001000023.1| hypothetical protein CJJ81176_0335 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87250256|gb|EAQ73214.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 352

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 11/209 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
           D        A++     + ++ IL DG +
Sbjct: 173 DLNLSSFVSAKNAHF--EGESWILRDGNI 199


>gi|288818803|ref|YP_003433151.1| hypothetical protein HTH_1500 [Hydrogenobacter thermophilus TK-6]
 gi|288788203|dbj|BAI69950.1| hypothetical protein HTH_1500 [Hydrogenobacter thermophilus TK-6]
 gi|308752389|gb|ADO45872.1| permease YjgP/YjgQ family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 285

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 13/220 (5%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             + Q+L+   ++ S    L   L          L    P    + ++ V   +  + +L
Sbjct: 25  FMLFQLLRIDKILFS--LPLEETLPFLMLWTSYSLFYFMPTSMFISSSVVFFELKDSKKL 82

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
            +I++ G +       V    + + I L     ++  +  S +++             + 
Sbjct: 83  HVIESFGIAPYLAYSRVFVRCMPIFISLIAISFMLREEDVSFMRRYLTYKYYMNMVYSVP 142

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDG 206
           E  FF L D +   +S+ N  N +  +F       +   +  A+   +D D  AI+  DG
Sbjct: 143 EKTFFTLGD-MTFYVSERN-GNDVSDVFF-----KKGESLVIAKGAHLDSD--AIVFTDG 193

Query: 207 EVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQN 246
            +       +   +  F  Y +  E   S     +   ++
Sbjct: 194 SI--LVKEGEKFYLTAFSQYRISLEKFVSVERQQRNLKRD 231


>gi|86151428|ref|ZP_01069643.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153749|ref|ZP_01071952.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315123881|ref|YP_004065885.1| hypothetical protein ICDCCJ07001_285 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841775|gb|EAQ59022.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85842710|gb|EAQ59922.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|307747250|gb|ADN90520.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315017603|gb|ADT65696.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 352

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + +  F    +L+     
Sbjct: 173 DLNLSSFVSAKNAHF--EGESWILRDGNITLLPKNYELANDGLKLQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +  +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDALKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|167004981|ref|ZP_02270739.1| hypothetical protein Cjejjejuni_01670 [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 351

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 106/354 (29%), Gaps = 20/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  Y  R + + F      ++     I +L     +  +     + +    +   + 
Sbjct: 1   MDIFSFY-FRDLFKKFFYYIFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 56

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 57  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 116

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 117 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 171

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 172 DLNLSSFVSAKNAHF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 229

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +T +   +K +    F     LI      
Sbjct: 230 IIEGVASNSDYSISDALE-SFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF- 287

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        F++  ++  ++     +    E +     I  +    I  
Sbjct: 288 -PVIARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 340


>gi|86149085|ref|ZP_01067317.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597305|ref|ZP_01100540.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218561972|ref|YP_002343751.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85840443|gb|EAQ57700.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190366|gb|EAQ94340.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359678|emb|CAL34464.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284925585|gb|ADC27937.1| putative integral membrane protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315928386|gb|EFV07700.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930530|gb|EFV09573.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 352

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 107/354 (30%), Gaps = 19/354 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +    ++     I +L     +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAANLDLLYVMFLSF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +P V P          L SM R  E + +   G SR  +I      A+            
Sbjct: 58  VPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFLWALFFCCIYIGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFIVDSR 179
                    + +             +    F   ++ ++ ISK N   N+ Q I I +  
Sbjct: 118 SFAYANDYKRNIL-----KNGTIMNQSGEVFLKFNNNFVYISKINNGQNSAQNIKIFNIN 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKSY-TLQTESAN 234
           D        A++     + ++ IL DG +          +  + I  F    +L+     
Sbjct: 173 DLNLSSFASAKNAHF--EGESWILRDGNITLLPKNYELANDGLKIQDFSELKSLEGFKPK 230

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
               V   +D ++S  L  +      +    +T +   +K +    F     LI      
Sbjct: 231 IIEGVASNSDYSISDALE-SFELFKAQNVNTDTLKINLYKFVFTPFFAPFLMLIMYYFF- 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISS 348
              + R        FI+  ++  ++     +    E +     I  +    I  
Sbjct: 289 -PVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIVVPIIILG 341


>gi|322379484|ref|ZP_08053850.1| permease [Helicobacter suis HS1]
 gi|322380465|ref|ZP_08054664.1| putative permease [Helicobacter suis HS5]
 gi|321147110|gb|EFX41811.1| putative permease [Helicobacter suis HS5]
 gi|321148091|gb|EFX42625.1| permease [Helicobacter suis HS1]
          Length = 355

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 116/350 (33%), Gaps = 34/350 (9%)

Query: 17  LMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNV 76
           L+  L + F    I  LQ      S+   + +     G      +    P    +     
Sbjct: 16  LIILLALEFFFLGIDSLQYAEKFPSAANLILLFFVYDGL---YAINYTLPISLLLGLVLF 72

Query: 77  LTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
            T+  R+ +   + + G S   ++KP+L+    ++    +    +       +++ +   
Sbjct: 73  YTAFIRSNQYTALLSIGYSIKEILKPMLW----INGLCILIYVGLNATPFVYMQEKAQSI 128

Query: 137 QLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
                 + + ENL  + ++D YI   K NP     Q + I   +D Q +    A S S +
Sbjct: 129 IYKDNTNSISENLLVKYNND-YIYFGKINPLLQNAQNVKIFMLKDNQLNTFAQAPSASFE 187

Query: 196 LDRQAI--ILNDGEVHRKSPISKDISIMK---------FKSYTLQTESANSSTIVLKAND 244
                +  +             K +S+ K         F+   L T   N   + +    
Sbjct: 188 GKFWVLHSVTLSTLPTPLLLGKKGLSVQKLPLLKTLKGFRPKVLDTIYQNKPAVSITDAF 247

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKK 304
           ++L  L     +    R  L  +              P    L +I+ A     + + + 
Sbjct: 248 RSLHVLYRQKADTKKIRGFLYVSI-----------FLPFFVPLTAILIAYYTPNLARYEN 296

Query: 305 IHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP---ILYLFLFCISSIFL 351
           +  + +   +   + WG  + + K   +  ++P   +L  F+  I   F 
Sbjct: 297 LALLSLKFILLSLILWGLFFAMGKFSISGVFLPEVGVLAPFIILIGVSFY 346


>gi|15618903|ref|NP_225189.1| hypothetical protein CPn0995 [Chlamydophila pneumoniae CWL029]
 gi|15836526|ref|NP_301050.1| hypothetical protein CPj0995 [Chlamydophila pneumoniae J138]
 gi|16752032|ref|NP_445398.1| hypothetical protein CP0860 [Chlamydophila pneumoniae AR39]
 gi|33242364|ref|NP_877305.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
 gi|4377324|gb|AAD19132.1| CT838 hypothetical protein [Chlamydophila pneumoniae CWL029]
 gi|7189772|gb|AAF38649.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8979368|dbj|BAA99202.1| CT838 hypothetical protein [Chlamydophila pneumoniae J138]
 gi|33236875|gb|AAP98962.1| hypothetical protein CpB1032 [Chlamydophila pneumoniae TW-183]
 gi|269302795|gb|ACZ32895.1| putative permease, YjgP/YjgQ family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 366

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 124/370 (33%), Gaps = 29/370 (7%)

Query: 1   MKSFELYILRCI-GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYL--I 57
           M  ++ ++L         +  L ++F A +   L  +   S++    ++ L I  YL  I
Sbjct: 1   MLIWKRHLLTRFWFALTSLLVLALIFYASIHHSLHTLKGASTAASGASVKLSILYYLAQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ TT+ L +M    E++++  +G S  +L+ P+L    ++ + L+ +
Sbjct: 61  SLKAEFLMPQLVAVATTSTLFAMQNKREIILLQASGLSLKSLMHPLLLSGAVIMMVLYAN 120

Query: 118 ENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF--FRLDDDLYIKISKYNPNN-TLQGIF 174
              + P C    K    K  +    +  E+       L D   +  S   P   TL  +F
Sbjct: 121 FQWLHPICE---KISITKENMDRGTTDKEQGKIPALYLKDQTVLLYSSIEPKTLTLNNVF 177

Query: 175 -IVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM----KFKSYTLQ 229
            I D +      IY  +  +       I LN  +       + ++       +F      
Sbjct: 178 WIKDPK-----TIYTMEKLAFTTLSLPIGLNVTQFFANDSENLELKEFFDMKEFPEIEFN 232

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNP------NYRPELLETYRSEFHKRLTQWLFPV 283
                 S +    N   LS      P N          P+ + +  ++F+  L   L   
Sbjct: 233 FYENPFSKLFSAGNKNRLSEFFKAIPWNATGLGLSTQVPQRILSLLAQFYYVLISPLAC- 291

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL 343
               I + A       R         I L      F      I         +P L +  
Sbjct: 292 -MAAIILSAYLCLRFSRTPTVTLAYLIPLGTVNIFFVFLKAGIVLASS--SVLPTLPVMA 348

Query: 344 FCISSIFLLM 353
           F +  +FLL 
Sbjct: 349 FPLIVLFLLT 358


>gi|239946701|ref|ZP_04698454.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920977|gb|EER21001.1| permease, YjgP/YjgQ family [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 362

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFMTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I        + L AK    LT   L E +  +    L    S  + N  +Q  FI  +  
Sbjct: 124 IGTIGLQKYELLEAK----LTKKALSEGIISK--SGLLFFESLNDENQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|283955209|ref|ZP_06372710.1| LOW QUALITY PROTEIN: putative integral membrane protein
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793246|gb|EFC32014.1| LOW QUALITY PROTEIN: putative integral membrane protein
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 353

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 96/289 (33%), Gaps = 16/289 (5%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           L    +L  + +P V P          L SM R  E + +   G S+  ++      A+ 
Sbjct: 47  LLYIMFLCFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSKNYVVLFPFLWALF 106

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-N 168
                               + +             +    F   ++ ++ ISK N   N
Sbjct: 107 FCCIYIGLNFTSFAYANDYKRNIL-----KNGTIMTQSGEVFLKFNNNFVYISKINNGQN 161

Query: 169 TLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFK 224
           + Q I I +  D+       A++     + ++ IL DG +          +  + I  F 
Sbjct: 162 SAQNIKIFNINDSNLSSFISAKNAYF--EGESWILRDGNITLLPKNYELANDGLKIKDFS 219

Query: 225 SY-TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPV 283
              +L          V   +D ++S  L  +      +    +  R   +K +    F  
Sbjct: 220 QLKSLDGFKPKIIEGVASNSDYSISDALE-SFELFRAQNVNTDALRINLYKFIFTPFFLP 278

Query: 284 IFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQN 332
            F ++ I+      + R        FI+  ++  + WG  +++ ++ +N
Sbjct: 279 HFLML-IMYYFFPIIARFFNLAFVTFIAFVVTLMI-WGVLFLLTRLSEN 325


>gi|305432868|ref|ZP_07402026.1| integral membrane protein [Campylobacter coli JV20]
 gi|304444022|gb|EFM36677.1| integral membrane protein [Campylobacter coli JV20]
          Length = 352

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 77/230 (33%), Gaps = 15/230 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F  +I     ++F +  L ++     I +L   N +  +     + +    +   + 
Sbjct: 1   MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAANLSLLYVIFLAF---SA 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +  V P          L SM R  E + +   G S+  +I      A+            
Sbjct: 58  VTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFLWALFFCFVYVGLNFT 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNN-TLQGIFIVDSR 179
                    + +             +    F   ++ +I ISK N    T Q I I + +
Sbjct: 118 PFAYANDYKRNIL-----KNGTMLKQSGEVFLKFNNEFIYISKVNNGQSTAQNIKIFNIK 172

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEV----HRKSPISKDISIMKFKS 225
           D        A+SG    +++  IL +G +          +K ++I +FK 
Sbjct: 173 DLNLSSFIEAKSGIF--EKKNWILKEGNLTLLPKEYELGNKGLNISEFKE 220


>gi|157826222|ref|YP_001493942.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
 gi|157800180|gb|ABV75434.1| hypothetical protein A1C_06005 [Rickettsia akari str. Hartford]
          Length = 362

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + FL+    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLAKLYSKCFLVILFLLIVLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V            L+++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVCSLISFTAMLFFLSNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I        + L AK    LT   L E +  +    L    S    N  +Q  FI  +  
Sbjct: 124 IGTIGLQKYELLEAK----LTKKALSEGIISK--SGLLFFESLNGENQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|166154182|ref|YP_001654300.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|166155057|ref|YP_001653312.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335427|ref|ZP_07223671.1| putative membrane transport protein [Chlamydia trachomatis L2tet1]
 gi|165930170|emb|CAP03654.1| putative membrane transport protein [Chlamydia trachomatis 434/Bu]
 gi|165931045|emb|CAP06608.1| putative membrane transport protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 366

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 126/376 (33%), Gaps = 39/376 (10%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLI 57
           M  ++ Y+L     S   +  L ++F A +   L        + +   L + L      I
Sbjct: 1   MVIWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ +T  L SM    E+L++  +G S  TLI+P++  + L+++ L+ +
Sbjct: 61  SLKAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYAN 120

Query: 118 ENIIEPKCRSTI-------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
              + P C           K    KAQ  +   YL++         + I  S      TL
Sbjct: 121 FQWLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQT-------VLIFSSINRRAATL 173

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFK 224
             +F +     +  K  YA            I       ++ E H  S +++   + +F 
Sbjct: 174 NNVFWI-----KGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVS-LTQFFDMKEFP 227

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN------YRPELLETYRSEFHKRLTQ 278
                      S I +   D + S  L   P +          P+ + +  + F+  L  
Sbjct: 228 ELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLIS 287

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L  +    + + A       R  K      + L      F         +  N   +P 
Sbjct: 288 PLLCI--AAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLK--AGMVLANNSVLPA 343

Query: 339 LYLFLFCISSIFLLMI 354
           L +       + L+ +
Sbjct: 344 LQVMFIPAGFMLLITL 359


>gi|157829030|ref|YP_001495272.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933754|ref|YP_001650543.1| hypothetical protein RrIowa_1403 [Rickettsia rickettsii str. Iowa]
 gi|157801511|gb|ABV76764.1| hypothetical protein A1G_06555 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908841|gb|ABY73137.1| hypothetical membrane spanning protein [Rickettsia rickettsii str.
           Iowa]
          Length = 362

 Score = 53.0 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +  L++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFLRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++   +   I+  +   +   I
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVL---VIPCIVTLMLGIVFTTI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++     +  LT   L E +  +    L    S  +    +Q  FI  +  
Sbjct: 121 LNPISTIGLQKYEL-LEAKLTKKALSEGIISK--SGLLFFESLNDETQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|67459625|ref|YP_247249.1| permease [Rickettsia felis URRWXCal2]
 gi|67005158|gb|AAY62084.1| Predicted permeases [Rickettsia felis URRWXCal2]
          Length = 362

 Score = 53.0 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++     + ++L I      N 
Sbjct: 64  LGQVSSLISFTSMLFFLRNLTKNNELTAMLSSGIHIWQVLVIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I        + L AK    LT   L E +  +    L    S  + N  +Q  FI  +  
Sbjct: 124 IGTIGLQKYELLEAK----LTKKTLSEGIISK--SGLLFFESLKDENQIIQTQFINIAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|224438054|ref|ZP_03658993.1| hypothetical protein HcinC1_08770 [Helicobacter cinaedi CCUG 18818]
 gi|313144499|ref|ZP_07806692.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129530|gb|EFR47147.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 358

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 122/368 (33%), Gaps = 39/368 (10%)

Query: 4   FELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPM 63
              ++     + FL+  L +      I  L+ I  +     S N+L+    Y     L  
Sbjct: 2   LIRFVGFYYLKYFLIIFLGLEGFFLAIDTLKYIEELPD---SANLLILFLFYDGVFALTY 58

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
             P    + +     +  ++++L  +   G S+  ++ P+L ++ LL+            
Sbjct: 59  TLPISLVLCSIMFYMAFLKSSQLTALMALGYSKRQILAPLLLISSLLTAGFIGLNATPFA 118

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP----NNTLQGIFIVDSR 179
             +   + +  +         + ENL  +   + YI + K  P        +GI +    
Sbjct: 119 YAKEYAESIIYQNAQN-----IRENLLLK-SGNQYIFLRKLYPLFNGEARAEGIKVFTL- 171

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILND------------GEVHRKSPISKDISIMK-FKSY 226
           D  ++ + Y ++     ++   +L              GE      + +++ I+K F S 
Sbjct: 172 DENSNLVAYHEANEAFFEKNIWVLKKAKSVDITNSPTLGEKALDISLKEELEILKGFSSK 231

Query: 227 TLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF-PVIF 285
            L+T + +     +     +L      N ++   R  L           L    F P+  
Sbjct: 232 VLETIAQDKPIASIVDAFASLKIAKRQNVSSDKIRGILYGL--------LVIPFFVPLCI 283

Query: 286 GLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC 345
            +I+       +L R        F+S+ ++  ++  F  +         Y  +  L    
Sbjct: 284 AIIAY---YIPSLPRYGNLTLISFVSIIVALAIWGVFYSLSQLSVAGLVYPEVGLLLPMG 340

Query: 346 ISSIFLLM 353
           I     + 
Sbjct: 341 ILCAVFMW 348


>gi|108760212|ref|YP_631129.1| hypothetical protein MXAN_2918 [Myxococcus xanthus DK 1622]
 gi|108464092|gb|ABF89277.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 371

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 104/366 (28%), Gaps = 11/366 (3%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +  +Y+LR   R  L     +V +  V+  + R  L +     +    ++  Y     +
Sbjct: 3   GTLFIYVLRTYLRFALGILAGLVLVFVVVDFVDRAKLYTGPGW-VWDAAELYFYKAMMSV 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + P    +     ++++ +  E+  I         L  P+L  + +  + L   +  +
Sbjct: 62  QQLGPAALLLAAGTTVSALRKQGEVTAIRALTFGPSALYLPILVASFVACVGLVAFDERV 121

Query: 122 EPKCRSTIKQLSAKAQLA--LTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
                  + +++ +          Y     +FR  D+++            Q + +    
Sbjct: 122 ATYSGRRVDEITTQRFNKWGDWRFYYTPKQWFRRGDNIFFLRGGSAQEG-FQDVSVFTVT 180

Query: 180 DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISK-DISIMKFKSYTLQTESANSSTI 238
           ++   +     SG   ++     L D          K  +  +    Y L          
Sbjct: 181 ESFDLQRRLDASGMFPVEGMRWRLTDVVERTFDGEGKTSVRQLPEAEYDLGVAVTAFRIR 240

Query: 239 VLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRAL 298
             +      S L        +      + +    H R    +      L+ +        
Sbjct: 241 PGRPEQMRASELREQIVARRDV-GLATKQFELALHNRFAYPMAAFPAALLGV--GLALRA 297

Query: 299 VRQRKKIHPIFISLSISF---GVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
            R+      I   L  +    G+      ++     +P         L  + +  + + +
Sbjct: 298 NRRGHLTAAIIEGLLTAVAMWGLMMVCRTLVLTERLSPGVAAWTPTVLLGLIAGAVWLQR 357

Query: 356 KKYTKI 361
           +    +
Sbjct: 358 EGRLHL 363


>gi|216263568|ref|ZP_03435563.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
           ACA-1]
 gi|215980412|gb|EEC21233.1| putative permease, YjgP/YjgQ family protein [Borrelia afzelii
           ACA-1]
          Length = 333

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 23  IVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNR 82
           ++ I      +  +N +     SL  +  I    +P          F    +N++ +++ 
Sbjct: 1   MILIILGDLFVNLLNFL-EKNISLKDIFYIYYLYLPKAFSDGVALSFLFAISNLIGNLSM 59

Query: 83  NTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
             E++ + + G     +++P++ +++ +S+ LF  +N + 
Sbjct: 60  RNEIIGLFSCGVPLTRILRPIILISVFISVVLFFFDNYLV 99


>gi|257459022|ref|ZP_05624141.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
 gi|257443407|gb|EEV18531.1| permease YjgP/YjgQ [Campylobacter gracilis RM3268]
          Length = 348

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 118/365 (32%), Gaps = 26/365 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK +  Y      + F +  + +      I +L  +    SS  +  + + ++  +    
Sbjct: 1   MKLYVKYAALSYLKYFFILLIALECFYVGIDVLTNLKDFPSSANTALLYIALTAAV---A 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L    P         +  +M R+ EL+     G S+  LI P   +A+ ++         
Sbjct: 58  LSYTLPLSLIFALILMGFNMIRSNELVSFYALGVSKNALIIPPFLIALAIT--ASFIALN 115

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P   +       K Q  LT         F   +  YI I   N  N    I I +  D
Sbjct: 116 STPFAYA------LKFQKNLTDLSPTGGDMFLKFEGKYIYIKALNGKNA-NDITIFNIGD 168

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGE-----VHRKSPISKDISIMKFKSYTLQTESANS 235
                  +A SG      +   L D          K   S   S +  +S  L+    +S
Sbjct: 169 NSVASRSHASSGEY--AGKIWHLRDVNTTTLPTQLKLGGSGLKSKLSAQSEALKGFDPSS 226

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
              V   ++         +    +++   + T ++  +  +    FP+   L  +V    
Sbjct: 227 IASVYDTSNVYSIRDALRSIRTFSHQGVNISTIKASLYNMI---FFPLFAPLAVLVLYYY 283

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP----ILYLFLFCISSIFL 351
             +  +   +  +     I+    WG  +++ +   N   IP    I+ +      + FL
Sbjct: 284 LPVTGRFFNLALLSFGFFIATLCAWGVLFVLIRFSLNGVIIPEFGIIVPIIALLGFAAFL 343

Query: 352 LMIKK 356
           +   +
Sbjct: 344 VFKHR 348


>gi|157964920|ref|YP_001499744.1| putative permease [Rickettsia massiliae MTU5]
 gi|157844696|gb|ABV85197.1| Putative permease [Rickettsia massiliae MTU5]
          Length = 370

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 67/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  I   +    +     +   ++  Y IP +
Sbjct: 12  LKTLSWYLTKLYFKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYL 71

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++   +   I+  +   +   I
Sbjct: 72  LGQVSSLISFSAMLFFLRNLTKNNELTAMLSSGIHIWQVL---VIPCIVTLMLGIVFTTI 128

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++     +  LT   L E +  +    L    +  + N  +Q  FI  +  
Sbjct: 129 LNPIGTIGLQKYEL-LEAKLTKKALSEGIISK--SGLLFFEALNDENQIIQTQFINVAEK 185

Query: 181 TQTHKIYY 188
              +    
Sbjct: 186 KLNNITIL 193


>gi|213022333|ref|ZP_03336780.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGNYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +      
Sbjct: 62  KDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIG 121

Query: 119 NIIE 122
             + 
Sbjct: 122 EWVA 125


>gi|153875332|ref|ZP_02003181.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
 gi|152068203|gb|EDN66818.1| permease YjgP/YjgQ [Beggiatoa sp. PS]
          Length = 218

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 20/169 (11%)

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGS--IDLDRQAIILNDGEVHRKSPISKDISIMK 222
           N +NT+Q +F+  +       I  A  G   I      ++L DG  +   P + +  + +
Sbjct: 6   NESNTMQTLFVQVNL-PHKRVIMVADRGYQVIQEGELFMVLIDGYRYESPPGALNYIVTQ 64

Query: 223 FKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFP 282
           F  + ++       T      D   + LL               + ++E   RL+  L  
Sbjct: 65  FAEHRIRV-PKRLDTPKNDRRDAIPTDLLWFAKEP---------SLQAELQWRLSLPLTV 114

Query: 283 VIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ 331
           ++   +++         RQ +    +F  L     ++  ++ +++  ++
Sbjct: 115 ILLAALAVP--LSHTTPRQGQYAKILFGIL-----IYLIYNNLLNVAKK 156


>gi|15605868|ref|NP_213245.1| hypothetical protein aq_359 [Aquifex aeolicus VF5]
 gi|14916753|sp|O66685|Y359_AQUAE RecName: Full=Uncharacterized protein aq_359
 gi|2983036|gb|AAC06646.1| putative protein [Aquifex aeolicus VF5]
          Length = 356

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 115/354 (32%), Gaps = 18/354 (5%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST--ESLNILLKISGYLIPTV 60
             + Y+L      FL      V +  +  +L  +          +L+  L I       +
Sbjct: 2   LLDRYLLSRFLGIFLNVSFVSVLLVSLYALLDFLVGFKEKRTDVALSYFLNILPLGFYYI 61

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +       +    V        EL +  + G S +    PVL  ++ LS    +    
Sbjct: 62  SFITLSISLILFLRKVFEK---KMELTV-QSFGISPLRFSLPVLLFSVFLSSTFLLGNEY 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFS-YLEENLFFRLDDDL--YIKISKYN-PNNTLQGIF-I 175
             PK    +  +    +       +++   F + ++++  Y  +   N  + +L   + +
Sbjct: 118 AFPKLLGNLWFIEKNYKKKQEVKGFIKNFWFIKKENEVKTYYHVGNLNLSDGSLFNFYTM 177

Query: 176 VDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS 235
              R              +  D++  I   GE++      ++   +  K++ L       
Sbjct: 178 KVERKNLNPLEVLKVFSGVWKDKEIFI-RSGEIYDFEKGKRE--KVFNKTFKLGLSIKEV 234

Query: 236 STIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADK 295
                K +  +LS +      +       ++ Y  E   R+   L PV    ISI +   
Sbjct: 235 ELFSEKIDFLSLSEIFFLMQKSKKV-GLNVDVYTGELFYRVMFSLSPV---FISIFSLYL 290

Query: 296 RALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
               +   ++ P F+   +   +      I+ +    P    ++ +FL  + S+
Sbjct: 291 FFKHKVLSQVIPRFLVFIVILWLVILSPKILPQKANQPVLYSLIPIFLLILYSL 344


>gi|194323556|ref|ZP_03057333.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
           novicida FTE]
 gi|208779047|ref|ZP_03246393.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
 gi|194322411|gb|EDX19892.1| hypothetical protein FTE_1717 [Francisella tularensis subsp.
           novicida FTE]
 gi|208744847|gb|EDZ91145.1| hypothetical protein FTG_1341 [Francisella novicida FTG]
          Length = 283

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    I P      
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTMVFGGYIAP------ 54

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
             +  +       +Y   +L+F+  D      +         GI     +D +  +I YA
Sbjct: 55  --ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYA 112

Query: 190 QSGSIDLDRQAIILN 204
           +S +   D  A + N
Sbjct: 113 ESATYINDASANVFN 127


>gi|157804140|ref|YP_001492689.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
 gi|157785403|gb|ABV73904.1| hypothetical protein A1E_04940 [Rickettsia canadensis str. McKiel]
          Length = 333

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 27  AWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
             +  I   +    +     +   ++  Y IP +L  V+           L+++ +N EL
Sbjct: 1   MIISNIFDLLQKFKNIYVPFSFFWRLILYKIPYLLGQVSSLISFTAMLFFLSNLTKNNEL 60

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLE 146
            +I ++G     ++     + ++L I      N I        + L AK    LT   L 
Sbjct: 61  TVILSSGVHIWQVLVSPCIVTLILGIVFTTILNPIGTIGLQKYELLEAK----LTKKALS 116

Query: 147 ENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYY 188
           + +  +    L    S  + N  +Q  FI  +     +    
Sbjct: 117 DGIISK--SGLLFFESLNDANQIIQTQFINVAEKKLNNITVL 156


>gi|15605573|ref|NP_220359.1| hypothetical protein CT838 [Chlamydia trachomatis D/UW-3/CX]
 gi|76789583|ref|YP_328669.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
 gi|237803270|ref|YP_002888464.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|255311679|ref|ZP_05354249.1| putative membrane transport protein [Chlamydia trachomatis 6276]
 gi|255317980|ref|ZP_05359226.1| putative membrane transport protein [Chlamydia trachomatis 6276s]
 gi|3329309|gb|AAC68435.1| hypothetical protein CT_838 [Chlamydia trachomatis D/UW-3/CX]
 gi|76168113|gb|AAX51121.1| hypothetical protein CTA_0914 [Chlamydia trachomatis A/HAR-13]
 gi|231274504|emb|CAX11300.1| putative membrane transport protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436394|gb|ADH18568.1| putative membrane transport protein [Chlamydia trachomatis G/9768]
 gi|296437325|gb|ADH19495.1| putative membrane transport protein [Chlamydia trachomatis G/11222]
 gi|296438253|gb|ADH20414.1| putative membrane transport protein [Chlamydia trachomatis G/11074]
 gi|297140754|gb|ADH97512.1| putative membrane transport protein [Chlamydia trachomatis G/9301]
 gi|297748966|gb|ADI51512.1| Hypothetical protein CTDEC_0838 [Chlamydia trachomatis D-EC]
 gi|297749846|gb|ADI52524.1| Hypothetical protein CTDLC_0838 [Chlamydia trachomatis D-LC]
          Length = 366

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 126/376 (33%), Gaps = 39/376 (10%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLI 57
           M  ++ Y+L     S   +  L ++F A +   L        + S   L + L      I
Sbjct: 1   MVIWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ +T  L SM    E+L++  +G S  TLI+P++  + L+++ L+ +
Sbjct: 61  SLKAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYAN 120

Query: 118 ENIIEPKCRSTI-------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
              + P C           K    KAQ  +   YL++         + I  S      TL
Sbjct: 121 FQWLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQT-------VLIFSSINRRAATL 173

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFK 224
             +F +     +  K  YA            I       ++ E H  S +++   + +F 
Sbjct: 174 NNVFWI-----KGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVS-LTQFFDMKEFP 227

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN------YRPELLETYRSEFHKRLTQ 278
                      S I +   D + S  L   P +          P+ + +  + F+  L  
Sbjct: 228 ELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLIS 287

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L  +    + + A       R  K      + L      F         +  N   +P 
Sbjct: 288 PLLCI--AAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLK--AGMVLANNSVLPA 343

Query: 339 LYLFLFCISSIFLLMI 354
           L +       + L+ +
Sbjct: 344 LQVMFIPAGFMLLITL 359


>gi|237805191|ref|YP_002889345.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273491|emb|CAX10407.1| putative membrane transport protein [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 366

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLI 57
           M  ++ Y+L     S   +  L ++F A +   L        + S   L + L      I
Sbjct: 1   MVIWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAISRAPLQLSLLYYLSQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ +T  L SM    E+L++  +G S  TLI+P++  + L+++ L+ +
Sbjct: 61  SLKAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLIRPLVISSSLITLLLYAN 120

Query: 118 ENIIEP 123
              + P
Sbjct: 121 FQWLHP 126


>gi|34581207|ref|ZP_00142687.1| hypothetical protein [Rickettsia sibirica 246]
 gi|28262592|gb|EAA26096.1| unknown [Rickettsia sibirica 246]
          Length = 362

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++   +   I+  +   +   I
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVL---VIPCIVTLMLGIVFTTI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++     +  LT   L E +  +    L    S  +    +Q  FI  +  
Sbjct: 121 LNPIGTIGLQKYEL-LEAKLTKKALSEGIISK--SGLLFFESLNDKTQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|229587132|ref|YP_002845633.1| Putative permease [Rickettsia africae ESF-5]
 gi|228022182|gb|ACP53890.1| Putative permease [Rickettsia africae ESF-5]
          Length = 362

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++   +   I+  +   +   I
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVL---VIPCIVTLMLGIVFTTI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++     +  LT   L E +  +    L    S  +    +Q  FI  +  
Sbjct: 121 LNPIGTIGLQKYEL-LEAKLTKKALSEGIISK--SGLLFFESLNDETQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|15893122|ref|NP_360836.1| hypothetical protein RC1199 [Rickettsia conorii str. Malish 7]
 gi|238650591|ref|YP_002916443.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
 gi|15620329|gb|AAL03737.1| unknown [Rickettsia conorii str. Malish 7]
 gi|238624689|gb|ACR47395.1| hypothetical protein RPR_03025 [Rickettsia peacockii str. Rustic]
          Length = 362

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   ++  Y IP +
Sbjct: 4   LKTLSWYLTKLYSKCFFIILFLLIGLLIISNVFDLLQKFKNIYVPFSFFWRLILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  + ++G     ++   +   I+  +   +   I
Sbjct: 64  LGQVSSLISFTAMLFFLRNLTKNNELTAMLSSGIHIWQVL---VIPCIVTLMLGIVFTTI 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           + P     +++     +  LT   L E +  +    L    S  +    +Q  FI  +  
Sbjct: 121 LNPIGTIGLQKYEL-LEAKLTKKALSEGIISK--SGLLFFESLNDETQIIQTQFINVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|91204945|ref|YP_537300.1| putative permeases [Rickettsia bellii RML369-C]
 gi|91068489|gb|ABE04211.1| Putative permeases [Rickettsia bellii RML369-C]
          Length = 362

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 48/139 (34%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   +   Y +P +
Sbjct: 4   LKTLSWYLAKLYFKCFFIILSILIGLLIISNLFDLLQKFKNMYVPFDFFWRFILYKVPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPYIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLA 139
           I          L AK    
Sbjct: 124 IGALGLQKYDLLEAKLTKK 142


>gi|29840523|ref|NP_829629.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
 gi|29834872|gb|AAP05507.1| YjgP/YjgQ family protein [Chlamydophila caviae GPIC]
          Length = 367

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 125/376 (33%), Gaps = 40/376 (10%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRI---NLVSSSTESLNILLKISGYL 56
           M  ++ Y+L     S + +  L  VF A +   L  I   +   +S  SL + +      
Sbjct: 1   MYIWKRYVLTKFWLSLVSLIVLAFVFYASIHHSLHAIKGNSTALASGASLKLSVLYYLSQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIRSSFIITLLLYA 120

Query: 117 SENIIEPKCRSTI-------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT 169
           +   + P C           +    KAQ  +   YL++         + +  S      T
Sbjct: 121 NFQWLHPICEKISTTKEHMDRGTLDKAQDKVPALYLKDQT-------VLLYSSIEQKALT 173

Query: 170 LQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAI-----ILNDGEVHRKSPISKDIS-IMKF 223
           L  +F +     +  K  Y     +     ++     ++   E    +    + S + +F
Sbjct: 174 LNKVFWI-----KNPKTIYTME-KLAFTTPSLPIGLDVIRFSETESGTMELSEFSDMKEF 227

Query: 224 KSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP------NYRPELLETYRSEFHKRLT 277
                       S I        LS      P N          P+ + +  S F+  L 
Sbjct: 228 PEIEFGFYDNPFSKIFTAGGKNRLSESFRAIPWNATGLGLSTTIPQRISSLLSTFYYMLI 287

Query: 278 QWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
             L  +   +I + A       R         + L      F         +  N   +P
Sbjct: 288 SPLACIS-AMI-LSAYLCLRFSRVPTVTLAYLVPLGTINTFFV--FLKAGMVLSNSSVLP 343

Query: 338 ILYLFLFCISSIFLLM 353
           IL + LF +  + +  
Sbjct: 344 ILPVMLFPLVVLAIFT 359


>gi|195953935|ref|YP_002122225.1| hypothetical protein HY04AAS1_1565 [Hydrogenobaculum sp. Y04AAS1]
 gi|195933547|gb|ACG58247.1| hypothetical protein HY04AAS1_1565 [Hydrogenobaculum sp. Y04AAS1]
          Length = 289

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 14/249 (5%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M+ F L+ L+ +  +     + I FI + I+    + ++  S  +    L          
Sbjct: 1   MRIF-LFFLKGLLVNVYFYTMIICFIFFSIESFSLVYVL--SYVNGLTALGFLASWFSYY 57

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
                P    +   +    +    ++      G S + +++  L+   +     F     
Sbjct: 58  FIYFLPLGVIISVFSFFYKLFSQNKIQAFYIFGVSPLYILRQSLYAVAIPLFLGFSFSFF 117

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I  +  +  K    +         +    F  + D   +     + + + + +F+     
Sbjct: 118 ITNEDITYAKNYLMEEFAKRVIEAIPPKTFEHVGD-YAVYFDNKSKD-SFENMFVS---- 171

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            Q  K  Y +          +   DGEV   S  +    ++ FKS  +Q     SSTI  
Sbjct: 172 -QDGKYIYMKKAYYKEG--VLYAEDGEV--VSEENSKDYVVDFKSLKIQIYKLTSSTISK 226

Query: 241 KANDQNLSF 249
           K   +++ F
Sbjct: 227 KIVKKDILF 235


>gi|328675789|gb|AEB28464.1| conserved membrane protein of unknown function [Francisella cf.
           novicida 3523]
          Length = 283

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + I+ SI   +    I P      
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVVLVGIIGSITTIVFGGYIAP------ 54

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
             +  +       +Y   +L+F+  D      +         GI     +D +  +I YA
Sbjct: 55  --ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYA 112

Query: 190 QSGSIDLDRQAIILN 204
           +S +   D  A + N
Sbjct: 113 ESATYINDASANVFN 127


>gi|237750188|ref|ZP_04580668.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374082|gb|EEO24473.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 356

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 114/368 (30%), Gaps = 37/368 (10%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
              +  L+    + F    +  LQ  + ++ S  +    L             V P    
Sbjct: 9   RYLKPTLVILCGLEFFFICVDSLQYFDALAQSANNAIWFLAFDAM---YAFNYVLPLALL 65

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIK 130
           +       S+ ++ + + + + G SR  +  P   +  L+               +    
Sbjct: 66  LGLIVFYISLIKSNQYVALLSLGYSRRKIFYPPFLIINLVVCGYIGLNATDFVYAQERAD 125

Query: 131 QLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIV-----DSRDTQTHK 185
            + + +  A     L    F R + D       Y      + I I      DSR  +   
Sbjct: 126 NIVSSSNNADVSKDL----FIRYNTDYVFFEKVYPLLQKAENIQIYHTEYKDSR--KLVS 179

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMK-----------FKSYTLQTESAN 234
           I  A+ G    D   ++     +   S    D  ++            FK   L T   N
Sbjct: 180 ITRAKEGYFHNDEWKLLNPQVSILPTSYDLGDKGMITTGHDSTTTLKGFKPKVLDTFYKN 239

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              I +     +L  L+    +    R  L            T  + P    ++ ++ A 
Sbjct: 240 KPAISITDAFYSLQILMQEGADTARTRGVLY-----------TLAVTPFFISMLCVIIAY 288

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP-ILYLFLFCISSIFLLM 353
               + +   +  + +SLS+   + WG  + + K+  N  +IP    L    I  +  ++
Sbjct: 289 YAPPLARYGNLAMLGVSLSVLSLMVWGVFFSLGKLNANAVFIPEFSMLVPLGILLVVSIV 348

Query: 354 IKKKYTKI 361
             +K  +I
Sbjct: 349 YYRKLDEI 356


>gi|163782091|ref|ZP_02177090.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882623|gb|EDP76128.1| hypothetical protein HG1285_18199 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 357

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 7/202 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  F+ Y+L    + F       V +  +  +     L+     +L + LK + YLIP  
Sbjct: 1   MNIFDRYLLLNFLKVFSAISFVSVGLIVLYSLTDF--LLGFKETNLEVGLKYTLYLIPLG 58

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +++     +    +            + + G S +      +   ++LS         
Sbjct: 59  FYILSSLLVNIALIVLFRRFFSKGVDFTVQSFGISPLRFSAVFVGFTLVLSSLFLFLNES 118

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFF---RLDDDLYIKISKYN-PNNTLQGIF-I 175
             P     +  +    +       L E L+F         Y+ I   +  +    G+F +
Sbjct: 119 FLPGLFKRVWYIEKTYKKKQEIGRLVERLWFVKKTSFGKYYVYIGSLDVTSGKFAGLFML 178

Query: 176 VDSRDTQTHKIYYAQSGSIDLD 197
             S + +  ++   +SG    +
Sbjct: 179 RVSSEGKVKEVVEGKSGRWSGN 200


>gi|255349243|ref|ZP_05381250.1| putative membrane transport protein [Chlamydia trachomatis 70]
 gi|255503780|ref|ZP_05382170.1| putative membrane transport protein [Chlamydia trachomatis 70s]
 gi|255507461|ref|ZP_05383100.1| putative membrane transport protein [Chlamydia trachomatis
           D(s)2923]
 gi|289525884|emb|CBJ15366.1| putative membrane transport protein [Chlamydia trachomatis Sweden2]
 gi|296435470|gb|ADH17648.1| putative membrane transport protein [Chlamydia trachomatis E/150]
 gi|296439187|gb|ADH21340.1| putative membrane transport protein [Chlamydia trachomatis E/11023]
          Length = 366

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 125/376 (33%), Gaps = 39/376 (10%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLI 57
           M  ++ Y+L     S   +  L ++F A +   L        + +   L + L      I
Sbjct: 1   MVIWKRYLLSRFWISLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ +T  L SM    E+L++  +G S  TLI P++  + L+++ L+ +
Sbjct: 61  SLKAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTLICPLVISSSLITLLLYAN 120

Query: 118 ENIIEPKCRSTI-------KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTL 170
              + P C           K    KAQ  +   YL++         + I  S      TL
Sbjct: 121 FQWLHPICEKISVTKEHMDKGTLEKAQEKIPALYLKDQT-------VLIFSSINRRAATL 173

Query: 171 QGIFIVDSRDTQTHKIYYAQSGSIDLDRQAII------LNDGEVHRKSPISKDISIMKFK 224
             +F +     +  K  YA            I       ++ E H  S +++   + +F 
Sbjct: 174 NNVFWI-----KGPKTIYAIKKLAFTTPSLPIGLEVSYFSEDENHEVS-LTQFFDMKEFP 227

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPN------YRPELLETYRSEFHKRLTQ 278
                      S I +   D + S  L   P +          P+ + +  + F+  L  
Sbjct: 228 ELEFSYYDNPFSKIFITGRDCSFSAFLQAIPWHAAKFGLLTTVPQRILSLLTLFYYMLIS 287

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPI 338
            L  +    + + A       R  K      + L      F         +  N   +P 
Sbjct: 288 PLLCI--AAVILSAHLCLRFHRLPKITWAYLVPLGTINIFFVVLK--AGMVLANNSVLPA 343

Query: 339 LYLFLFCISSIFLLMI 354
           L +       + L+ +
Sbjct: 344 LQVMFIPAGFMLLITL 359


>gi|328676743|gb|AEB27613.1| conserved membrane protein of unknown function [Francisella cf.
           novicida Fx1]
          Length = 283

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            +     L+ +  N+E++++ + G S   + K V+ + ++ S+   +    I P      
Sbjct: 1   MVGALMGLSLLANNSEIIVLRSFGRSTAQIAKGVILVGLIGSVTTIVFGGYIAP------ 54

Query: 130 KQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYA 189
             +  +       +Y   +L+F+  D      +         GI     +D +  +I YA
Sbjct: 55  --ILQRQVDTNMVTYNTHDLWFKTPDGFMNIANIEPTKGKAYGIRKFMVQDNKVREIRYA 112

Query: 190 QSGSIDLDRQAIILN 204
           ++ +   D  A + N
Sbjct: 113 ENATYINDASANVFN 127


>gi|315122194|ref|YP_004062683.1| putative permease protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495596|gb|ADR52195.1| putative permease protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 321

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
           +S   +P ++    PF   + +  V  ++NR  EL+I    G S   L+ P    + LL 
Sbjct: 15  LSVTRLPLIIQQTIPFISLIVSMIVFFNLNRTNELVITRAVGVSIWQLLSPFTTGSFLLG 74

Query: 112 IFLFISEN 119
           +F  +  N
Sbjct: 75  MFTILVIN 82


>gi|224531722|ref|ZP_03672354.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
 gi|224511187|gb|EEF81593.1| permease, YjgP/YjgQ family [Borrelia valaisiana VS116]
          Length = 329

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 36/78 (46%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
               +L I    +P          F    +N++ +++   E++ + + G S   +++P++
Sbjct: 18  GFKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMRNEIIGLFSCGVSLTRILRPII 77

Query: 105 FLAILLSIFLFISENIIE 122
            +++ +S  LF  +N + 
Sbjct: 78  LISVFISAALFFFDNYLV 95


>gi|51473938|ref|YP_067695.1| hypothetical protein RT0756 [Rickettsia typhi str. Wilmington]
 gi|51460250|gb|AAU04213.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 362

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+  LY+ +   + F +    ++ +  +  I   +    +     +   +   Y IP +
Sbjct: 4   LKTLSLYLTKLYSKCFFIILFLLIVLLIISNIFDLLQKFKNIYVPFSFFWRFILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ ++ EL+ I ++G     ++     + ++L I      N 
Sbjct: 64  LTQVSSLISFTSMLFFLRNLTKSNELIAILSSGIHIWQVLIIPCIVTLILGIICTTLLNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I          L AK         L        +  L    S    N  +Q  FI  +  
Sbjct: 124 ISTIGLQKYAILEAKLTKKALSGGL------ISESGLLFFESLNEHNQIIQTQFIDVAEQ 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|89071066|ref|ZP_01158277.1| Predicted permease [Oceanicola granulosus HTCC2516]
 gi|89043397|gb|EAR49616.1| Predicted permease [Oceanicola granulosus HTCC2516]
          Length = 108

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 186 IYYAQSGSID--LDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
           IY A +  +        +++ DG         + +   +F  +T        S    +  
Sbjct: 2   IYTAATAYLVRSEGGPQLVMVDGLAQTLRGSDQRLYTTRFNDFTYDIGRLIVSEEPGRLR 61

Query: 244 DQNLSF--LLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           ++N+    LL  +              R+E H R+ + L   +
Sbjct: 62  ERNVWSGPLLQASSALQAQIERPAVALRAEVHDRMNKALLGFV 104


>gi|163784080|ref|ZP_02179031.1| hypothetical protein HG1285_04101 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880656|gb|EDP74209.1| hypothetical protein HG1285_04101 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 295

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 11/293 (3%)

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +    V   +  + ++  I   G S   LI P +  +I +      +  ++ PK +
Sbjct: 1   MAAVISFFIVYRELITSRKIYPIFLNGISIKYLITPAVLFSIFVFFIQLFNNLVVMPKSK 60

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLD----DDLYI-KISKYNPNNTLQGIFIV-DSRD 180
               +     +     S  ++ +F        D+         + N ++   FI     +
Sbjct: 61  ELSLKYYKTLKGGKLQSEEDKYIFISNQWIKLDNFTFAYFGFLDLNKSIGKNFIYIKLDN 120

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVL 240
            + + ++  ++ ++++ ++ + L  G +   + +  +    KF+      +    +   L
Sbjct: 121 KEFYPLFRVEAKTVNIQKEKLKLFKGRIVSLADVI-NFDYTKFEKLEYPVKIDTKNLRKL 179

Query: 241 KANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVR 300
               +  S L          R      Y   F  R   +   V   ++  +       +R
Sbjct: 180 IKIKRPTSILQFYEKAIIADRFGYPSGY---FWSRFFSYFTTVFSPIVLTIFIYPWIWLR 236

Query: 301 QRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
           +R+K   IF S+   + V    + +       PY+ P+    ++ I    LL 
Sbjct: 237 RREKYIVIFGSILFYWYVISALASLSETGG-VPYFSPVFINIIYLILGFILLF 288


>gi|225551662|ref|ZP_03772606.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
 gi|225371689|gb|EEH01115.1| permease, YjgP/YjgQ family [Borrelia sp. SV1]
          Length = 333

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 42/99 (42%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + +  +  +   +         L  +L I    +P          F    +N++ +++  
Sbjct: 1   MILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMR 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 61  NEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 99


>gi|226320855|ref|ZP_03796407.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
 gi|226233721|gb|EEH32450.1| permease, YjgP/YjgQ family [Borrelia burgdorferi 29805]
          Length = 333

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 42/99 (42%)

Query: 24  VFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN 83
           + +  +  +   +         L  +L I    +P          F    +N++ +++  
Sbjct: 1   MILIMLGDLFVNLLNYLEKNIGLKDILYIYYLYLPKAFSDGVALSFLFAISNLIGNLSMR 60

Query: 84  TELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
            E++ + + G     ++KP++ ++I +S+ LF  +N + 
Sbjct: 61  NEIIGLFSCGVPLTRILKPIILISIFISVVLFFFDNYLV 99


>gi|169837522|ref|ZP_02870710.1| Hypothetical membrane-spanning protein [candidate division TM7
           single-cell isolate TM7a]
          Length = 92

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           +K   Y  P ++    P    + +   ++ M +  E+  +  +G S   +    +  + L
Sbjct: 11  IKYLRYGTPEIITNTAPLGVLLGSLLCISKMAKQLEIAAMKTSGISFARIALFPMIFSFL 70

Query: 110 LSIFLFISENIIE 122
           +S+ +F     I 
Sbjct: 71  VSMGVFWINYDIL 83


>gi|34763637|ref|ZP_00144566.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27886690|gb|EAA23834.1| Hypothetical Membrane Spanning Protein [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 191

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 12/176 (6%)

Query: 186 IYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQ 245
           I  A+S   D D    I ++  ++           +    Y       + S  +  + + 
Sbjct: 20  IITAKSAKFDTDEDKWIFSNVNIYNVDTK----ETVTKTEYKSDLYKDDPSNFIRASAED 75

Query: 246 NLSFLLNPNPNNPNYR---PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
                +         +    E    Y +E  KR +      I   I + A      VR  
Sbjct: 76  PRMLTIKELKKTIKEQKNIGEDTRIYLAELAKRYSFPFASFIVAFIGLSA--SSKYVRGG 133

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPIL--YLFLFCISSIFLLMIKK 356
           +    + I +   +G +   S     +  N    P +  ++       I +  + +
Sbjct: 134 RTTMNLVICVVAGYGYYLV-SGAFEAMSLNGIVNPFVASWIPNILYLIIGIYFMNR 188


>gi|307721571|ref|YP_003892711.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306979664|gb|ADN09699.1| permease YjgP/YjgQ family protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 358

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 124/370 (33%), Gaps = 33/370 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            YI     + FL+    +V        +     +S S  S N++L    Y   + + ++ 
Sbjct: 5   KYISLHYIKYFLIILTALVLFVVGFDYMGSAEELSKS--SANLILIYLVYKSFSAIDILL 62

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P        +    + R+  L+   + G SR+ +++P +F++  + I             
Sbjct: 63  PVALVFAMISTKIYLIRSNALVSFFSLGYSRVDVLRPFVFVSTAVIILFIALHAW---SN 119

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTH 184
            +  ++ S   +    +     +LFF      YI  SK  P   + + I +    +    
Sbjct: 120 FARSEEFSRNIKKNAQYLSPTRDLFFA-YKGKYIYFSKLLPLQESAKNIRVFSVENESLK 178

Query: 185 KIYYAQSGSIDLD-----RQAIILNDGEVHRKSPI-----SKDISIMK-FKSYTLQTESA 233
           ++  A+S     +     R  II    ++   SP      +KD+ I++ F+   L     
Sbjct: 179 EVVVAKSARYIDNYWFIKRADIITKPDDLSLVSPGITVTKAKDLRILEGFRPKMLDQVYE 238

Query: 234 NSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFG-LISIVA 292
                 +K     +  L   N N  N +  L + +           ++P     LI I+ 
Sbjct: 239 GKVNFTIKDAVDAIRLLDKQNINTDNIKAALYKIF-----------IYPFFVPCLIVIIF 287

Query: 293 ADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQ---NPYYIPILYLFLFCISSI 349
                 VR        F ++  +   +    ++I        +     I+ + +  + + 
Sbjct: 288 FFVPMSVRFLNVSLFTFGAILATLLTWGILFFLIKLANNKVISSEIGIIVPVVILAVLAF 347

Query: 350 FLLMIKKKYT 359
                 +  T
Sbjct: 348 LQWHRHRSST 357


>gi|89898055|ref|YP_515165.1| hypothetical protein CF0248 [Chlamydophila felis Fe/C-56]
 gi|89331427|dbj|BAE81020.1| conserved hypothetical protein [Chlamydophila felis Fe/C-56]
          Length = 367

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 1   MKSFELYILRCIGRSFLM-SCLFIVFIAWVIQILQRIN---LVSSSTESLNILLKISGYL 56
           M  ++ Y+L     S +    L  +F A +   L  I       +S  SL + +      
Sbjct: 1   MYIWKRYVLTKFWLSLVFLIVLAFIFYASIHHSLHAIKGNATPLASGASLKLSILYYLSQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTLTLFSMQNKREVLLLQASGLSLKSLTAPLIVSSFIITLLLYA 120

Query: 117 SENIIEP 123
           +   + P
Sbjct: 121 NFQWLHP 127


>gi|304392006|ref|ZP_07373948.1| permease [Ahrensia sp. R2A130]
 gi|303296235|gb|EFL90593.1| permease [Ahrensia sp. R2A130]
          Length = 372

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 118/362 (32%), Gaps = 36/362 (9%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS-STESLNILLKISGYLIPTVL 61
           +  +Y+ +   R+ +   L   F+  ++ +L+     +         ++ I     P + 
Sbjct: 5   TLSVYLAKNFLRNTMFVFLVFFFLIALVDMLELSRRTARIDDVGFFDVVSIVMLRAPVLS 64

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
             + PF      +  L  +N+  EL++   +G S    + P+   A ++ + + +  N +
Sbjct: 65  ENIVPFAVLFGASASLLLLNKRLELVVARASGVSVWQFLAPICAAAAVVGLVMGLIYNPL 124

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ---------- 171
                 +++  ++   L          +      + + +I++ + +  L+          
Sbjct: 125 ------SLRLQASSLSLEGVVFAKNTGVTSDTTWNFWTRIARPDGDMVLRAAVAAERGKK 178

Query: 172 ----GIFIVDSRDTQTHKIYYAQSGSIDLD-------RQAIILNDGEVHRKSPISKDISI 220
                +++ D +D +  +   A S +               +L    +       K + +
Sbjct: 179 LSGVSLYLFD-KDGKPEQRIDAASANFAEAVPGTDSLPNRYVLERANILTVGEKPKVVPV 237

Query: 221 MKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
           M        + +A    I   + ++   + L+             E +++ +H  L   L
Sbjct: 238 MV----VPVSITAELLEIRQTSAERVSFWDLDDQAELAERAGRPPEPFQTRWHSVLALPL 293

Query: 281 FPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILY 340
             +   ++ +         R       I   +   F ++     ++     N    P++ 
Sbjct: 294 --LFVAMVLLAGTVSLTFARFGINGKRILTGVVAGFVLYVLTK-LVVTFGSNGLVSPVIA 350

Query: 341 LF 342
            +
Sbjct: 351 AW 352


>gi|15604603|ref|NP_221121.1| hypothetical protein RP769 [Rickettsia prowazekii str. Madrid E]
 gi|3861298|emb|CAA15197.1| unknown [Rickettsia prowazekii]
 gi|292572419|gb|ADE30334.1| Putative permease [Rickettsia prowazekii Rp22]
          Length = 362

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 6/188 (3%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+  LY+ +   + F +    ++ +  +  I   +    +     +   +   Y IP +
Sbjct: 4   LKTLSLYLTKLYSKCFFIILFLLIGLLIISNIFDLLQKFKNIYVPFSFFWRFILYKIPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ ++ EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LSQVSSLISFTSMLFFLRNLTKSNELTAILSSGIHIWQVLIIPCIVTLILGIICTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           I          L AK         L        +  L    S    N  +Q  FI  +  
Sbjct: 124 ISTIGLQKYSLLEAKLTKKALSECL------ISESGLLFFESLNEHNQIIQTKFIDVAEK 177

Query: 181 TQTHKIYY 188
              +    
Sbjct: 178 KLNNITIL 185


>gi|313683045|ref|YP_004060783.1| permease yjgp/yjgq family protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155905|gb|ADR34583.1| permease YjgP/YjgQ family protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 362

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 112/359 (31%), Gaps = 32/359 (8%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             + ++ ++  +     +   S    S N++L    Y     + M+ P          L 
Sbjct: 15  FSIVLIALSSFMVGFDLMENASELPHSANLVLIYIMYKYFYAVDMMLPISLTFAMIASLV 74

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
            + R+  L+   + G S+  ++ P L      ++   +    I     +  +       L
Sbjct: 75  ELVRSNALVAYFSIGYSKARILAPFL------TMTTLLISIYIGLHATNFARANEFADNL 128

Query: 139 ALTFSYLEE--NLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHKIYYAQSGSID 195
             +  ++    NLFF  + + YI      P +   + I I      Q  +   A      
Sbjct: 129 RDSSEFIRPTSNLFFTHEGN-YIYFGNLYPLSKRAEDIRIFTFEKGQLKEALSASEAVYR 187

Query: 196 LDRQAIILNDGEVHR------------KSPISKDISIMK-FKSYTLQTESANSSTIVLKA 242
                I      + R             +   +++ +++ FK   L           +  
Sbjct: 188 NGFWNI--EKAHMLRPPEDFDLKGLGIVTEDKENLKVLRDFKPKILDQVYEGKVNFTITD 245

Query: 243 NDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQR 302
             + L+ L N N +       +   +       +T W  P++  +           +   
Sbjct: 246 GLEALTLLKNQNVDVAKIMSGMYRMF-------ITPWFAPLLMVIFFTYTPVSSRFLNLS 298

Query: 303 KKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKYTKI 361
                  ++  + +G+ + F  + +    +P    IL + L  I  ++ L    +  ++
Sbjct: 299 LFSFGAILATLMVWGLLFMFGELSNNKTISPEIGIILPIGLLFIVMVWRLGNPLRRVRV 357


>gi|152993636|ref|YP_001359357.1| hypothetical protein SUN_2059 [Sulfurovum sp. NBC37-1]
 gi|151425497|dbj|BAF73000.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 361

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 116/366 (31%), Gaps = 31/366 (8%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            Y+ +   ++ L     + F    I   Q    +     S N  +    Y+    L ++ 
Sbjct: 12  RYLAKHYIKNLLAILFGLSFAFAAIDYFQYTEELQG---SWNYKILYIFYMWQEALGLLY 68

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P            +  +   +  +   G ++  L  PV  +A L                
Sbjct: 69  PLAIVFAVIMTKLTFVKQNTMGALHAFGYTKKRLFSPVFVIASLTYAVFIYLHTTEFSYA 128

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTH 184
           +     L      A   +    ++FF+  +D ++ I K NP    ++GI I         
Sbjct: 129 KDKANMLLKNQVHAYNVN----DMFFK-YNDTFVYIKKLNPIVKKIKGITIFKV--AGYQ 181

Query: 185 KIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN- 243
             Y  ++     + +  I  +  V      + ++       Y++  + + ++    K   
Sbjct: 182 VRYTIKAPVAVFNGEEWIAQNATVKTHIYQNGEL-----VRYSMDQKESIATLHGYKPKI 236

Query: 244 --DQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQ 301
                    LN       ++   ++   S    ++   ++  +   +  +A       + 
Sbjct: 237 IESLYEGKALNIIDAYNTWKLLEIQHLDS---DKIRATIYNKVIVPLFALALLLILFFKL 293

Query: 302 RKKIHPIFISLSISFGVF-----WGFSYIIHKIEQN----PYYIPILYLFLFCISSIFLL 352
                 +   + ++F +      WG  + + +I  N    P +  ++ + L  + +I++ 
Sbjct: 294 PFHARMMNFGVVVAFSLGVTFLIWGVLFGLEQIGLNGVLKPEFTAVMPIVLLWLYAIYVY 353

Query: 353 MIKKKY 358
              ++ 
Sbjct: 354 FTDERR 359


>gi|15834846|ref|NP_296605.1| hypothetical protein TC0226 [Chlamydia muridarum Nigg]
 gi|270285012|ref|ZP_06194406.1| hypothetical protein CmurN_01128 [Chlamydia muridarum Nigg]
 gi|270289035|ref|ZP_06195337.1| hypothetical protein CmurW_01183 [Chlamydia muridarum Weiss]
 gi|301336410|ref|ZP_07224612.1| hypothetical protein CmurM_01205 [Chlamydia muridarum MopnTet14]
 gi|7190265|gb|AAF39098.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 366

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 1   MKSFELYILRCIGRSFL-MSCLFIVFIAWVIQILQRINL--VSSSTESLNILLKISGYLI 57
           M  ++ YIL     S   +  L ++F A +   L        + +   L + L      I
Sbjct: 1   MAIWKRYILARFWLSLSSLFFLAVIFYASIHHSLHAFREGKTAIAGAPLQLSLLYYLSQI 60

Query: 58  PTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
                 + P   A+ +T  L SM    E+L++  +G S  T+I+P++  + L+++ L+ +
Sbjct: 61  SLKAEFILPQLVAIASTITLFSMQSKREILLLQASGLSLKTVIRPLILSSTLVTLLLYAN 120

Query: 118 ENIIEP 123
              + P
Sbjct: 121 FQWLHP 126


>gi|224373131|ref|YP_002607503.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
 gi|223589255|gb|ACM92991.1| putative permease YjgP/YjgQ [Nautilia profundicola AmH]
          Length = 340

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 9/191 (4%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           YI++   ++FL+    + F   +I  +   + +     S N+ +    Y++     M  P
Sbjct: 5   YIIKKYAKNFLLILFSLAFFFVIIDFIANFSKLPD---SSNLQVLYLYYIVLYSFDMFYP 61

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
                     +  M +  EL+   + G S   ++KP L  + L+       ++      R
Sbjct: 62  LAIVFSFLFTMYYMIKFNELVSFYSLGFSVKKILKPFLTFSFLIFFIFIALDSGKMAYVR 121

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKI 186
                +  K Q + T      NLF + +D +               I +   +D +  KI
Sbjct: 122 EYADSILNKRQYSNT------NLFIKFNDKIIYIKKIKPILKEAIDIRVFVLKDGKVKKI 175

Query: 187 YYAQSGSIDLD 197
             A+      D
Sbjct: 176 ISAKKAVFVND 186


>gi|329943109|ref|ZP_08291883.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
 gi|332287691|ref|YP_004422592.1| conserved hypothetical membrane transport protein [Chlamydophila
           psittaci 6BC]
 gi|313848265|emb|CBY17266.1| conserved hypothetical membrane protein [Chlamydophila psittaci
           RD1]
 gi|325506677|gb|ADZ18315.1| conserved hypothetical membrane transport protein [Chlamydophila
           psittaci 6BC]
 gi|328814656|gb|EGF84646.1| hypothetical protein G5Q_0788 [Chlamydophila psittaci Cal10]
 gi|328914944|gb|AEB55777.1| YjgP/YjgQ family protein [Chlamydophila psittaci 6BC]
          Length = 367

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 1   MKSFELYILRCI-GRSFLMSCLFIVFIAWVIQILQRINLVSSS---TESLNILLKISGYL 56
           M  ++ Y+L         +  L  VF A +   L  I   ++S     SL + +      
Sbjct: 1   MYIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLSQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYA 120

Query: 117 SENIIEP 123
           +   + P
Sbjct: 121 NFQWLHP 127


>gi|163782560|ref|ZP_02177557.1| hypothetical protein HG1285_16790 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882133|gb|EDP75640.1| hypothetical protein HG1285_16790 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 286

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 20/242 (8%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF 67
           IL  + R+  ++ L + FI  ++QI +   ++      L   +               P 
Sbjct: 6   ILWKVTRNTYITALTLAFILLMVQIFKIGFILF--GLPLTSSVPFFLVWFVYYGFFFIPD 63

Query: 68  CFAMETTNVLTSMNRNTELLIIDNTGTSRITL----IKPVLFLAILLSIFLFISENIIEP 123
                    +  +     L ++ +   S + L      PVLF  +L  +F  +       
Sbjct: 64  GLITAVATAVYELKEKRLLHVLYSFHISPLQLLGYFALPVLFFLVLSGVFSQVLYEEHVS 123

Query: 124 KCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQT 183
             R  +            F  + E  F     D+ +   K +    L+ +F+        
Sbjct: 124 FARRGL----LIQYKDRLFENMPEKTFLS-SGDVVVYAGKKD-GRELRDVFL-----KYK 172

Query: 184 HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAN 243
                A    +   R   +   G +   +       +M+F+ Y L TE   ++ I  K  
Sbjct: 173 DTHILADRA-VYEGRGRFLFERGSL--LTRERGKYFLMEFRRYWLDTEEFLTAEIREKRV 229

Query: 244 DQ 245
            +
Sbjct: 230 RR 231


>gi|157827727|ref|YP_001496791.1| putative permeases [Rickettsia bellii OSU 85-389]
 gi|157803031|gb|ABV79754.1| Putative permeases [Rickettsia bellii OSU 85-389]
          Length = 362

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 48/139 (34%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +K+   Y+ +   + F +    ++ +  +  +   +    +     +   +   Y +P +
Sbjct: 4   LKTLSWYLAKLYFKCFFIILFILIGLLIISNLFDLLQKFKNMYVPFDFFWRFILYKVPYL 63

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           L  V+           L ++ +N EL  I ++G     ++     + ++L I      N 
Sbjct: 64  LNQVSALISFTSMLFFLRNLTKNNELTAILSSGIHIWQVLIIPCIVTLILGIVFTTILNP 123

Query: 121 IEPKCRSTIKQLSAKAQLA 139
           I          L AK    
Sbjct: 124 IGALGLQKYDLLEAKLTKK 142


>gi|62185347|ref|YP_220132.1| hypothetical protein CAB734 [Chlamydophila abortus S26/3]
 gi|62148414|emb|CAH64181.1| conserved hypothetical membrane protein [Chlamydophila abortus
           S26/3]
          Length = 367

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 1   MKSFELYILRCI-GRSFLMSCLFIVFIAWVIQILQRINLVSSS---TESLNILLKISGYL 56
           M  ++ Y+L         +  L  VF A +   L  I   ++S     SL + +      
Sbjct: 1   MYIWKRYVLTKFWFSLVSLIVLAFVFYASIHHSLHTIKGNTTSLASGASLKLSILYYLAQ 60

Query: 57  IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFI 116
           I      + P   A+ TT  L SM    E+L++  +G S  +L  P++  + ++++ L+ 
Sbjct: 61  IALKAEFLIPQLVAVATTITLFSMQNKREVLLLQASGLSLKSLTAPLIHSSFIITLLLYA 120

Query: 117 SENIIEP 123
           +   + P
Sbjct: 121 NFQWLHP 127


>gi|315453577|ref|YP_004073847.1| putative integral membrane protein [Helicobacter felis ATCC 49179]
 gi|315132629|emb|CBY83257.1| putative integral membrane protein,Permease YjgP/YjgQ [Helicobacter
           felis ATCC 49179]
          Length = 355

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 103/343 (30%), Gaps = 35/343 (10%)

Query: 7   YILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTP 66
           Y L+      +   LF + I      LQ  +    +   L +     G      L    P
Sbjct: 10  YYLKYCFVILMALELFFIGI----DSLQYADKFPDAANLLLLFFVYDGL---YALNYTLP 62

Query: 67  FCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCR 126
               +       +  R+ +   +   G S   ++ P   L I L   +        P   
Sbjct: 63  ISLLLGLVLFYITFIRSNQYSALLAIGYSIRQILNP--MLTINLFFIIIFVGLNATPFVY 120

Query: 127 STIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTHK 185
              K ++   +       + ENL  + ++D Y+   K NP     Q I I   ++ +   
Sbjct: 121 MQDKAMAIIYKDN--AGNVSENLLVKYNND-YVYFGKINPLLQNAQNIKIFTLKNDELSA 177

Query: 186 IYYAQSGSIDLDRQAII----------LNDGEVHRKSPISKDISIMK-FKSYTLQTESAN 234
           +  A   +       +           L  G+       +  +  +K F    L T   N
Sbjct: 178 VAQADHAAFKDKYWTLHQATIATLPTPLGLGDQGLLVENAPLLKTLKGFHPKVLDTIYQN 237

Query: 235 SSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAAD 294
              + +    ++L  L   + +    R  L               L P    L +I+ A 
Sbjct: 238 KPAVSITDAFRSLHVLYRQHGDTKKIRGFLYVAI-----------LTPFFVPLTAILIAR 286

Query: 295 KRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIP 337
               + + + +  + +   I   + WG  + + K      + P
Sbjct: 287 YTPNLARYENLALLSLKFIILALILWGLFFALGKFSIAGLFYP 329


>gi|161505453|ref|YP_001572565.1| hypothetical protein SARI_03611 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866800|gb|ABX23423.1| hypothetical protein SARI_03611 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 59

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 21/56 (37%)

Query: 40 SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTS 95
                 N++L +    +P +  ++ P          L  +   +E++++   G S
Sbjct: 4  VDGDIPANLVLSLLELGVPEMAQLILPLSLFPGLLMTLGKLYTESEIMVMHACGLS 59


>gi|310822423|ref|YP_003954781.1| hypothetical protein STAUR_5182 [Stigmatella aurantiaca DW4/3-1]
 gi|309395495|gb|ADO72954.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 373

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 110/365 (30%), Gaps = 15/365 (4%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
            +   Y+ R   R  +     ++ +  V+  + R    +     +  +L++         
Sbjct: 3   GTLFRYVARLYARFAVGILAALLTVFLVVDFVDRSRAYTGEGW-VLAVLELYWNKALVTT 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    +     ++++ +  E+  +        +L  PV  +A+   + L   +  +
Sbjct: 62  QLLGPAALLLAAGAAVSTLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDERV 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYL--EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR 179
             +    + +++ +         L      +FR  +     +   +     + + I+   
Sbjct: 122 VAQASRRVDEITTQRFNRWGDWRLYYTPKQWFRRGE-HVFFLRSGSAQEGFRDVAILTLT 180

Query: 180 -DTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSST 237
            D +  +   A +  + L+     L        SP  +  +S      Y L   + +   
Sbjct: 181 ADFKLARRLDADT-MVPLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLI 239

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
              +     L  L                 Y    + R     +P+     ++VA     
Sbjct: 240 RPGRPEQMRLPELREQISARTEV-GLDSRQYELALYNRFA---YPMAGLPAALVAVGLAL 295

Query: 298 LVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLM 353
              ++  +    +   +     WG   +   +       P L  +L      + +  L +
Sbjct: 296 RPNRKGHLTVAIVEGLLIAMAMWGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWL 355

Query: 354 IKKKY 358
            ++ +
Sbjct: 356 RREGW 360


>gi|153875333|ref|ZP_02003182.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
 gi|152068204|gb|EDN66819.1| conserved hypothetical protein, membrane [Beggiatoa sp. PS]
          Length = 175

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 55/154 (35%), Gaps = 2/154 (1%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+ R I ++ L   + ++ I    + ++ +   S      N + ++    + + L 
Sbjct: 2   IISRYLFREILQTLLALLVLLILIYISHRFMRYLVQASVGDLPANFIFQLLALRLLSDLM 61

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
           ++ P  F +     L  + ++ E+  +   G     +   ++   ++ ++ + I   ++ 
Sbjct: 62  LLLPLGFFLALLLALGRLYKDNEITAMAACGIPVPIIS--IIGFGVMFAVIVGIFSLLLA 119

Query: 123 PKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
           P   +   QL  +         +    F   +  
Sbjct: 120 PWADNQRGQLQIQLNTMAEVGGIAAGRFKEFNHG 153


>gi|297521657|ref|ZP_06940043.1| Inner membrane protein yjgQ [Escherichia coli OP50]
          Length = 173

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 4/171 (2%)

Query: 112 IFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQ 171
           +        + P+     +   A+A    +    ++ L+ +  ++ ++ I +   +  L 
Sbjct: 2   LLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNN-FVYIERVKGDEELG 60

Query: 172 GIFIV-DSRDTQTHKIYYAQSGSIDLDRQAIILND-GEVHRKSPISKDISIMKFKSYTLQ 229
           GI I   + + +   + YA +   D + +   L+   E    +P     S     ++   
Sbjct: 61  GISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTN 120

Query: 230 TESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWL 280
                   + L  +  ++S L N          +    Y+     ++ Q L
Sbjct: 121 LTPDKLGVVALDPDALSISGLHN-YVKYLKSSGQDAGRYQLNMWSKIFQPL 170


>gi|254458642|ref|ZP_05072066.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
 gi|207084408|gb|EDZ61696.1| permease YjgP/YjgQ [Campylobacterales bacterium GD 1]
          Length = 355

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 112/348 (32%), Gaps = 26/348 (7%)

Query: 19  SCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLT 78
             + ++ +   +     +   SS + S N++L    Y     + M+ P            
Sbjct: 14  FSVILIALVMFLVGFDYMENASSLSSSANLVLIYLVYKAFFAIDMLLPLSLIFAMITTKI 73

Query: 79  SMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
            + R+  L+   + G SR+ ++KP + ++   +I +        P   S   + S   + 
Sbjct: 74  FLIRSNALVSFYSLGYSRVDVLKPFVVVS--TTIIVIFVSLHAIP-SFSRADEFSNNIRK 130

Query: 139 ALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDR 198
              +    ++LFF   D               +GI +   ++    ++  A+  +   + 
Sbjct: 131 NAAYLSPTKDLFFTYKDKYIYFAQMLPLQERAEGIRVFSIKENSLKEVLVAKEATYRNES 190

Query: 199 QAIILNDGEVH-----------RKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNL 247
             I   D               +         +  F+   L           +K     L
Sbjct: 191 WHIAQADVITKPDNMSFESKGIKVDHEKGLDILHGFRPKMLDQVYEGKVNFTIKNAIDAL 250

Query: 248 SFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHP 307
             L + N N  + +  L + +           ++P     + ++      +  +   +  
Sbjct: 251 LLLSDQNINTRSIKGALYKIF-----------IYPFFVPCLVVIIFFFVPISARFLNVSL 299

Query: 308 IFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIK 355
                 ++  + WG  +++ ++  N   IP     +  +  +FL+ ++
Sbjct: 300 FSFGAILATLLVWGILFMLIELSNNKT-IPSEAGVVAPVVILFLIALR 346


>gi|301346544|ref|ZP_07227285.1| permease YjgP/YjgQ family protein [Acinetobacter baumannii AB056]
          Length = 164

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 199 QAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNP 258
             + L  G  +   P     +  +F+SY L+ E+           +   +  L    N+P
Sbjct: 2   NVVDLVQGRRYEIFPGQPKYTQAEFQSYRLRLENDKDVKFESGDVEALSTSKLFSKANDP 61

Query: 259 NYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGV 318
                     RSE   RL      +I  ++S+  ++      +  ++ P     +    +
Sbjct: 62  VV--------RSELGWRLFGPFTIIIALMLSVALSEVSPRQGRYYRLIPSIFIFASLIVL 113

Query: 319 FWGFSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                  I K E + +  P+  L     +++F
Sbjct: 114 MIAIKTRISKGELDIWAYPVALLVYAIAAALF 145


>gi|32471812|ref|NP_864806.1| signal peptide [Rhodopirellula baltica SH 1]
 gi|32397183|emb|CAD72490.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
          Length = 413

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSS---TESLNILL-KISGYLIPTVLPMVTPFCFAMET 73
           M  L +  I  V      ++ + +     +SL ++L K  G  +  +  M       M  
Sbjct: 1   MCFLSLAGIFIVFHAFTAMDDLIAQSKVGDSLPLVLAKFYGPYLLLLFDMTGTIITLMAF 60

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
                 + R  EL    + G S   +++P++  ++ +      +   + P+ R ++   +
Sbjct: 61  LFTAGWLRRTGELTATLSAGVSHGRILRPMIIASLAIISVQLANREWVIPRFRDSLTMKA 120

Query: 134 AKAQLALTFSYL 145
                 +  + +
Sbjct: 121 KNLSGDIEQAVM 132


>gi|297519577|ref|ZP_06937963.1| hypothetical protein EcolOP_18177 [Escherichia coli OP50]
          Length = 115

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLK---ISGYLIP 58
              + YI + I   F    + +  +  +  I++ ++ +  + +     L     +   +P
Sbjct: 5   GVLDRYIGKTI---FTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVP 61

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
             + +  P    +     L  + + +EL+++  +G +R+ +   V+  AI L +
Sbjct: 62  KDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVL 115


>gi|254669827|emb|CBA04201.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 210

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 16/205 (7%)

Query: 163 KYNPNNTLQGIFIVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIM 221
           K  P++TL GI I    D     +   A S  ++ D     L +           ++SI 
Sbjct: 15  KSGPDHTLLGIKIWARNDKNELAEAVEADSAVLNSDGS-WQLKNIRRSTLGEDKVEVSIA 73

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQ 278
             +++ +  +      +++K +  ++  L   +    NN     +    Y   + ++L  
Sbjct: 74  AEENWPISVKRNLMDVLLVKPDQMSVGELTTYIRHLQNNS----QNTRIYAIAWWRKLVY 129

Query: 279 WLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYY 335
                +  L++          R       +F  + +          F +        P+ 
Sbjct: 130 PAAAWVMALVAFAF--TPQTTRHGNMGLKLFGGICLGLLFHLAGRFFGFTSQLYGIPPFL 187

Query: 336 IPILYLFLFCISSIFLLMIKKKYTK 360
              L    F + ++   +I+K+  +
Sbjct: 188 AGALPTIAFALLAV--WLIRKQEKR 210


>gi|254455252|ref|ZP_05068681.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082254|gb|EDZ59680.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 325

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 115/316 (36%), Gaps = 21/316 (6%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAIL 109
           + +S    P+++  + PF F + T      +  N E+ I   +G    +++K +  L ++
Sbjct: 18  IFLSLLNSPSMIFEMLPFIFLITTQLFFIKLFNNNEIEIFKYSGLKNTSILK-IFSLIVI 76

Query: 110 LSIFLFISENIIEPKCRSTI---KQLSAKAQLALTFSYLEENLFFR--LDDDLYIKISKY 164
            S  +                  ++    +         +  L+ +  +D+ +YI  S  
Sbjct: 77  SSGIILTIIFYNFSAVFKNFYLEEKTKFTSDSKYLAVITKNGLWIKDEIDEKIYIVNSSK 136

Query: 165 NPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHRKS--PISKDISI-M 221
             +N L   FI +  D     I   +S  I++        + +V+ K+   I K ++I  
Sbjct: 137 IESNFLINNFITEF-DKDYKVIRNLKSDKINIQSTDWQAFNVKVYDKNNYEIKKQLNIKT 195

Query: 222 KFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLF 281
            F    +QT  +N S++        L  L            E+   +     K L+  L+
Sbjct: 196 NFDYKRIQTLYSNLSSLSF----YQLFELRKNYKKLNYSLIEINLQFL----KILSFPLY 247

Query: 282 PVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG-FSYIIHKIEQNPYYIPILY 340
             +  +    +     + R       I + L  S  +++    +++    +    I  ++
Sbjct: 248 LFLVAI--FSSLIMFRVKRLHNTTFKISLGLFFSVIIYYINNFFMVMGNTERISLIFAIF 305

Query: 341 LFLFCISSIFLLMIKK 356
           + L  +S I  LM+ K
Sbjct: 306 IPLILLSIINSLMLNK 321


>gi|82523966|emb|CAI78777.1| predicted permease YjgP/YjgQ family [uncultured epsilon
           proteobacterium]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 8/193 (4%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            YI     + FL+  + +      +     +      + S N++L    Y     + M+ 
Sbjct: 5   KYISFHYIKYFLIILIAL---MLFLVGFDYMENAGDLSSSANLVLIYLVYKAFFAIDMLL 61

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P        +    + R+  L+   + G SR+ +++P + ++   SI +        P  
Sbjct: 62  PLSLVFAMVSTKIFLIRSNALVSFYSLGYSRVDVLRPFVVVS--TSIIVIFISLHALP-S 118

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNP-NNTLQGIFIVDSRDTQTH 184
            S   + S   +    +     +LFF   D  Y+  SK  P     +GI +    +    
Sbjct: 119 FSRADEYSNNIRKNAEYLSPTRDLFFTYKDQ-YVYFSKMLPLQERAEGIRVFSVINNSLQ 177

Query: 185 KIYYAQSGSIDLD 197
           ++  A+S     D
Sbjct: 178 EVLVAKSAVYRDD 190


>gi|182413673|ref|YP_001818739.1| permease [Opitutus terrae PB90-1]
 gi|177840887|gb|ACB75139.1| permease [Opitutus terrae PB90-1]
          Length = 887

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 62  PMVTPFCFAMETTNVLTS-MNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            +V     A     +    + R  EL +    G SR  L++P+L  A+L++I       +
Sbjct: 358 LLVLGMAVANAANLLFARAVARERELAVRGALGASRWRLLRPLLVEAVLMAILAGAFALV 417

Query: 121 IEPKCRSTIKQLSA 134
           +     + ++ L A
Sbjct: 418 LADWVDAWLRSLLA 431


>gi|78776668|ref|YP_392983.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
 gi|78497208|gb|ABB43748.1| permease YjgP/YjgQ [Sulfurimonas denitrificans DSM 1251]
          Length = 359

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVT 65
            YI     R F++  L +V        +     +     S N+ L    Y     + M+ 
Sbjct: 5   KYITFHYIRYFIIILLALVLFLVGFDYMGNTEKLD---ISANLFLIYVVYKTFYAIDMLL 61

Query: 66  PFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKC 125
           P        +    + R+  L+   + G SRI ++KP + +A    I LFIS + I    
Sbjct: 62  PLSLIFAMISTKIFLIRSNALVSFYSLGYSRIDILKPFVVVATA-MITLFISLHSI--SN 118

Query: 126 RSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHK 185
            +   + +   +    +     +LFF   D             + + I +    D    +
Sbjct: 119 FARADEFAKNIRKNAQYLSPTRDLFFTYKDKFVYFSKLLPLQESAENIRVFSFVDNSLKE 178

Query: 186 IYYAQSGSIDLDRQAIILND 205
           +  A+  S   D   I + D
Sbjct: 179 VLVAKRASYRNDAWLIKMAD 198


>gi|284799561|ref|ZP_06390218.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
 gi|284797389|gb|EFC52736.1| permease, YjgP/YjgQ family [Neisseria subflava NJ9703]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 70/197 (35%), Gaps = 8/197 (4%)

Query: 166 PNNTLQGIFIVDSRDTQT-HKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFK 224
           P++TL GI I    D     +   A+S  ++ D     L +           ++S    +
Sbjct: 3   PDHTLLGIKIWQRNDKNELTQAAEAESAVLNPDGS-WQLKNIRRSILGEDKVEVSTAAEE 61

Query: 225 SYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVI 284
           ++ +  +      +++K +  ++  L     ++     +  + Y   + ++L   +   +
Sbjct: 62  NWPISVKRNLMDVLLVKPDQMSVGELTT-YIDHLEKNNQNTQVYAIAWWRKLVYPVAAWV 120

Query: 285 FGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYL 341
             L++          R       +F  + +     +    F +        P+    L  
Sbjct: 121 MALVAFAF--TPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPT 178

Query: 342 FLFCISSIFLLMIKKKY 358
            LF + +++L+  ++K 
Sbjct: 179 VLFALLAVYLIRRQEKR 195


>gi|330443790|ref|YP_004376776.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
 gi|328806900|gb|AEB41073.1| YjgP/YjgQ family protein [Chlamydophila pecorum E58]
          Length = 384

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M  ++ Y+L     SF ++ LF+ FI +                S  I L     L+   
Sbjct: 18  MLIWKRYLLTKFWLSF-IALLFLAFIFYTSVHHSL--HAIKGNASFFISLSSLKLLLLYY 74

Query: 61  LP-------MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           L         + P   A+  T  L SM    E+L++  +G S  +LI P++    ++++ 
Sbjct: 75  LSQTVLKADFLFPQLIAIAATLTLFSMQSKREVLLLQASGLSLKSLITPLIASGGIVTLI 134

Query: 114 LFISENIIEP 123
           L+ +   + P
Sbjct: 135 LYANFQWLYP 144


>gi|88800547|ref|ZP_01116109.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
 gi|88776692|gb|EAR07905.1| hypothetical protein MED297_15285 [Reinekea sp. MED297]
          Length = 353

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 112/357 (31%), Gaps = 6/357 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           M     Y+++       +  L I  + +V  I        + T +L   +      +   
Sbjct: 1   MNIQNGYLVKQTSLMVSIVLLAIAGLLFVTGIADEAARRMTDTYTLQSAVIYKFSTLSAE 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +         + T   + S N++ EL II  +  S   L+  +L  A++L   ++     
Sbjct: 61  VYEYIGVIVMLGTLITVASFNKHQELTIIQLSAASAPALLLRLLLPALILLPIVYGIGEF 120

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
             P  ++  +Q  A  +     +      +++  ++ Y+ +   +    L GI      +
Sbjct: 121 AAPSWQNNAEQARALLRGEKNPTLR--GQWYK-ANNEYVNVEFISNETELTGITRFQM-N 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANS-STIV 239
            Q   +  + S        + +L +    +++    +   M   S+     +      + 
Sbjct: 177 PQKQLMAASYSKRAVYSDGSWVLINTIEVKRTERGFERKTMGISSWENAVFTPELVRNLA 236

Query: 240 LKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALV 299
           L++++  L  L             L          R+   L  +    +++  A      
Sbjct: 237 LESSNLTLPELWTQ-VRFRAEAGTLTPALERTLWNRVLFPLQYIGLMFVALAFAFGSFRQ 295

Query: 300 RQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
           +         + L +  G+          +   P +  +L          F L+ ++
Sbjct: 296 KTIGDAAFKALVLGVISGLLIDTLSASLMVLAMPAFAAVLVSNSLFTGLAFYLLKRR 352


>gi|145629198|ref|ZP_01784997.1| predicted permease [Haemophilus influenzae 22.1-21]
 gi|144978701|gb|EDJ88424.1| predicted permease [Haemophilus influenzae 22.1-21]
          Length = 68

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 23/54 (42%)

Query: 33 LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTEL 86
          ++ +   ++     +++  + G  +PT+  ++ P C  +        +   +E+
Sbjct: 1  MRVLGAAANGNVPADLVFSLLGLGMPTMAQLMLPLCLFIAILLTFGRLYAESEI 54


>gi|328956715|ref|YP_004374101.1| cell-division ABC transporter [Carnobacterium sp. 17-4]
 gi|328673039|gb|AEB29085.1| cell-division ABC transporter [Carnobacterium sp. 17-4]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++    F +  T  +T  +R TE+ I+   G +   +  P L    L+ +   I   
Sbjct: 175 IVALILTAVFLISNTIRITIFSRRTEIEIMKLVGATNWYIRWPFLIEGALIGLIGAIIPV 234

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            I          +         F+ L  N F      L +
Sbjct: 235 TILSFVYVASFDVLTNFLKGTYFALLTPNPFLYQVGGLML 274


>gi|325108543|ref|YP_004269611.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
 gi|324968811|gb|ADY59589.1| permease YjgP/YjgQ family protein [Planctomyces brasiliensis DSM
           5305]
          Length = 374

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 37/118 (31%), Gaps = 8/118 (6%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSST-------ESLNILLKIS 53
           +  FE  + R       +    I+ +  +I +   ++   + +        ++ I+    
Sbjct: 2   LTIFERSVFRQFLFVNAVFLCVIMGLFTIIDLFDNVDDFVNHSGEGGFPVIAMKIVGYYG 61

Query: 54  GYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLS 111
              +        P   A+     +  + R  ++    + G     ++ P L   + + 
Sbjct: 62  KMGLFIFDAAAVPM-IAISLLTTMLMLKRKGQIKPFLSAGIPAYRVLTPALLCGVCVM 118


>gi|296816597|ref|XP_002848635.1| calcium P-type ATPase [Arthroderma otae CBS 113480]
 gi|238839088|gb|EEQ28750.1| calcium P-type ATPase [Arthroderma otae CBS 113480]
          Length = 765

 Score = 42.6 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   I+F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLAAGLILFVVLFIKFLAHLKNIHGATAKGQAFLQIFIMAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL-IIDNT 92
            P    +      T M R+  L+ ++   
Sbjct: 560 LPLAVTLALAFATTRMLRDNNLVRLLRAC 588


>gi|115379865|ref|ZP_01466928.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
 gi|115363124|gb|EAU62296.1| hypothetical protein STIAU_7243 [Stigmatella aurantiaca DW4/3-1]
          Length = 315

 Score = 42.6 bits (99), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 86/289 (29%), Gaps = 14/289 (4%)

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
           +++ +  E+  +        +L  PV  +A+   + L   +  +  +    + +++ +  
Sbjct: 20  STLRKRGEVTALRALTFGPASLYLPVGAVALAACLGLIAFDERVVAQASRRVDEITTQRF 79

Query: 138 LALTFSYL--EENLFFRLDDDLYIKISKYNPNNTLQGIFIVDSR-DTQTHKIYYAQSGSI 194
                  L      +FR  +     +   +     + + I+    D +  +   A +  +
Sbjct: 80  NRWGDWRLYYTPKQWFRRGE-HVFFLRSGSAQEGFRDVAILTLTADFKLARRLDADT-MV 137

Query: 195 DLDRQAIILNDGEVHRKSPISKD-ISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNP 253
            L+     L        SP  +  +S      Y L   + +      +     L  L   
Sbjct: 138 PLEGNRWRLTGVVERSFSPDGRTAVSAAPEAEYDLGVPARSFLIRPGRPEQMRLPELREQ 197

Query: 254 NPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLS 313
                         Y    + R     +P+     ++VA        ++  +    +   
Sbjct: 198 ISARTEV-GLDSRQYELALYNRFA---YPMAGLPAALVAVGLALRPNRKGHLTVAIVEGL 253

Query: 314 ISFGVFWGFSYIIHKIEQNPYYIPILYLFL----FCISSIFLLMIKKKY 358
           +     WG   +   +       P L  +L      + +  L + ++ +
Sbjct: 254 LIAMAMWGLIVVSKTLVTTERMAPGLAAWLPSGVLVVVATVLWLRREGW 302


>gi|332686415|ref|YP_004456189.1| cell division protein FtsX [Melissococcus plutonius ATCC 35311]
 gi|332370424|dbj|BAK21380.1| cell division protein FtsX [Melissococcus plutonius ATCC 35311]
          Length = 294

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 42  STESLNILLKISG----YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
              S + + +I+     + +   + ++    F +  T  +T ++R  E+ I+   G    
Sbjct: 152 GGVSSDKIFRIAATVRTWGLAAAILLLFVAVFLISNTIRITILSRKREIHIMRLVGAKNG 211

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
            +  P       + +F  I   +I          +     L   +S L+   F    D L
Sbjct: 212 FIRWPFFLEGAWIGLFGAIIPVVILTIGYQQFYNIFNPQLLRSNYSLLKPENFVMKIDVL 271

Query: 158 YIKIS 162
            + I 
Sbjct: 272 MVFIG 276


>gi|306842049|ref|ZP_07474722.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
 gi|306287890|gb|EFM59310.1| permease YjgP/YjgQ family protein [Brucella sp. BO2]
          Length = 286

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 74  TNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS 133
              L S+NR  EL++  + G S    + P  F A+L  +      N +     S  ++++
Sbjct: 1   MATLISLNRKYELVVARSVGVSAWQFLLPACFGALLFGLATIFILNPLAAHGFSKAEEIA 60

Query: 134 AKAQLAL---TFSYLEENLFFRLDDDLYIKISK--YNPNNTLQGI-FIVDSRDTQTHKIY 187
           A  +        +  +  L  + D+   I  +K   N   TL    FI           Y
Sbjct: 61  AMWKTGKVTDVSALRDPWLRQKTDEGETIIGAKSILNQGTTLADATFIQFDEQKNIKDRY 120

Query: 188 YAQSGSIDLDRQAI 201
            A++ ++      +
Sbjct: 121 DARTATLQDGYWEL 134


>gi|320088912|emb|CBY98670.1| Lipopolysaccharide export system permease protein lptG [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 220

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 9/216 (4%)

Query: 146 EENLFFRLDDDLYIKISKYNPNNTLQGIFIV---DSRDTQTHKIYYAQSGSIDLDRQAII 202
           ++ L+ +  ++ ++ I +   +  L GI I    D R  +   + YA S   D + +   
Sbjct: 9   QQGLWAKDGNN-FVYIERVKGDEELAGISIYAFNDQR--RLQSVRYAASAKFDPEHKVWR 65

Query: 203 LND-GEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYR 261
           L+   E   ++P     S     ++           + L  +  ++S L N         
Sbjct: 66  LSQVDESDLQNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHN-YVKYLKSS 124

Query: 262 PELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVF-W 320
            +    Y+     ++ Q L   +  L+++                   IS    F V   
Sbjct: 125 GQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQ 184

Query: 321 GFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKK 356
            F  +       P    +L    F + S++L++ K 
Sbjct: 185 IFGPLTLVYGIPPIVGALLPSASFFLISLWLMLRKS 220


>gi|326479225|gb|EGE03235.1| P-type calcium ATPase [Trichophyton equinum CBS 127.97]
          Length = 1314

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/89 (12%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLTAGLVLFVVLFIKFLVHLKTIQGATAKGQAFLQIFIMAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL-IIDNT 92
            P    +      T M R+  L+ ++   
Sbjct: 560 LPLAVTLALAFATTRMLRDNNLVRLLRAC 588


>gi|315049901|ref|XP_003174325.1| calcium-transporting ATPase [Arthroderma gypseum CBS 118893]
 gi|311342292|gb|EFR01495.1| calcium-transporting ATPase [Arthroderma gypseum CBS 118893]
          Length = 1405

 Score = 41.9 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   I+F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 501 VLAEYIAKLGLTAGLILFVVLFIKFLVHLKNIQGATAKGQAFLQIFIMAVTVIVVAVPEG 560

Query: 65  TPFCFAMETTNVLTSMNRNTELL-IIDNT 92
            P    +      T M R+  L+ ++   
Sbjct: 561 LPLAVTLALAFATTRMLRDNNLVRLLRAC 589


>gi|116626043|ref|YP_828199.1| hypothetical protein Acid_7001 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229205|gb|ABJ87914.1| protein of unknown function DUF214 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 751

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 43  TESLNILLKISGYLIPTVLPMVTPFCFA--METTNVLTSMNRNTELLIIDNTGTSRITLI 100
            +  +       +L+   + M+        +    +     R  E+ I    G +R  L 
Sbjct: 234 GQGGDDYRMFVFFLMLLGIAMILALIACSNVAGLLLARRAARFREMTIRQALGANRWQLA 293

Query: 101 KPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALT 141
           +P+L  A++L      S   ++   RS ++ L       + 
Sbjct: 294 RPLLGEALVLVACGAASGLALDAWLRSHLRYLRWPTAYNIP 334


>gi|302658490|ref|XP_003020948.1| hypothetical protein TRV_04942 [Trichophyton verrucosum HKI 0517]
 gi|291184820|gb|EFE40330.1| hypothetical protein TRV_04942 [Trichophyton verrucosum HKI 0517]
          Length = 1404

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLTAGLVLFVVLFIKFLVHLKNIQGATAKGQAFLQIFIMAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M R+  L+
Sbjct: 560 LPLAVTLALAFATTRMLRDNNLV 582


>gi|302497890|ref|XP_003010944.1| hypothetical protein ARB_02842 [Arthroderma benhamiae CBS 112371]
 gi|291174490|gb|EFE30304.1| hypothetical protein ARB_02842 [Arthroderma benhamiae CBS 112371]
          Length = 1404

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLTAGLVLFVVLFIKFLVHLKNIQGATAKGQAFLQIFIMAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M R+  L+
Sbjct: 560 LPLAVTLALAFATTRMLRDNNLV 582


>gi|319956049|ref|YP_004167312.1| permease yjgp/yjgq family protein [Nitratifractor salsuginis DSM
           16511]
 gi|319418453|gb|ADV45563.1| permease YjgP/YjgQ family protein [Nitratifractor salsuginis DSM
           16511]
          Length = 372

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 121/371 (32%), Gaps = 32/371 (8%)

Query: 2   KSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVL 61
           K   LYI R   ++FL+  + +      I  LQ+   +       N  +  + Y    ++
Sbjct: 5   KRTFLYIARHYLKNFLILLIGLSLAVVFIDFLQQAQRLHGG---ANRKILYAFYTWEYMV 61

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
            ++ P    M       S       + + + G  R  ++ P L   +L+ +     +   
Sbjct: 62  ALIYPLVILMAMAWTQISFIYRNVFVSLFSFGFGRRQILIPFLASGVLIYLVFTGLQMTS 121

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNT-LQGIFIVDSRD 180
               +   + +    +     +    NLFF+  +D ++  S+ +P +  L    I + + 
Sbjct: 122 FAYGQDRARMILHADRYKDALN----NLFFK-YNDSFVYASRLDPLHKALLRGMIFEVKK 176

Query: 181 TQTHKIYYAQSGSIDLDRQAIILNDGEV------HRKSPISKDISIMKFKSYTLQ---TE 231
            Q  +                  +DGE        R      +  +  F+   L+     
Sbjct: 177 NQVVRTLRFDEARF---------HDGEWIAPRALVRSKRFDTEGELTGFEDKELKNMILL 227

Query: 232 SANSSTIVLKANDQNLSFLLNPNPNNPNYRPELL--ETYRSEFHKRLTQWLFPVIFGLIS 289
                 +  K  +     L++        + + L  +  ++  + ++   LF +   +I 
Sbjct: 228 KGYRPKVFRKIYEGGTFSLVDSLAALHLLKKQGLSADKVKAILYNKVLTPLFALAMMVI- 286

Query: 290 IVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSI 349
                +  L  +  +   ++ +L  S  + W   + + ++  N    P L   L  +  I
Sbjct: 287 --FFYRTPLYHRFVRKEQLWTALLGSALLTWALLFALFRLGMNGVIDPDLGQTLPILILI 344

Query: 350 FLLMIKKKYTK 360
                  +  +
Sbjct: 345 LYAWRLDRRIR 355


>gi|327293840|ref|XP_003231616.1| P-type calcium ATPase [Trichophyton rubrum CBS 118892]
 gi|326466244|gb|EGD91697.1| P-type calcium ATPase [Trichophyton rubrum CBS 118892]
          Length = 1404

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLTAGLVLFVVLFIKFLVHLKNIQGATAKGQAFLQIFIMAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M R+  L+
Sbjct: 560 LPLAVTLALAFATTRMLRDNNLV 582


>gi|182413695|ref|YP_001818761.1| permease [Opitutus terrae PB90-1]
 gi|177840909|gb|ACB75161.1| permease [Opitutus terrae PB90-1]
          Length = 817

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFA-METTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           +  L  + G L   ++ +V     A +       ++ R  EL++    G SR  +++ +L
Sbjct: 276 MADLAPVIGCLFTGLVLLVLFIACANVANLMGSHALAREKELVVRAALGASRWRIVRLLL 335

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQL 132
             ++LL++   I    +       ++ L
Sbjct: 336 AESVLLAVLAGIVGYSLAWWGGDAMRSL 363


>gi|326406517|gb|ADZ63588.1| cell division transport system permease protein [Lactococcus lactis
           subsp. lactis CV56]
          Length = 311

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 29/102 (28%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +T ++R  E+ I+   G     +  P       + +   I   +
Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPGL 251

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           I              +  +   +      F      L   I 
Sbjct: 252 IVAWAYRLAFVSLTPSLQSQKLAMFAPKEFIPAIVGLMALIG 293


>gi|261193861|ref|XP_002623336.1| ferro-O2-oxidoreductase [Ajellomyces dermatitidis SLH14081]
 gi|239588941|gb|EEQ71584.1| ferro-O2-oxidoreductase [Ajellomyces dermatitidis SLH14081]
          Length = 654

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 24/178 (13%)

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS-AKAQLALTFSYL 145
                 G SR  L   V+FL +++S    +      P   S  + L   + Q       L
Sbjct: 32  TSSQAAGWSRSYLASVVIFLVLVVSFLGALRIPRSPPYYSSQNRVLGPTQQQQHPGAQRL 91

Query: 146 EE-----NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG--SIDLDR 198
                       +  +  +      P+  L+ I++V+ +      +  A+SG   I   R
Sbjct: 92  HPEAHIYRTVRTIRLNWTVTAGYRRPDGVLKRIYLVNGQFPG--PVVEARSGDRLIVDVR 149

Query: 199 QAIILNDGEVHRKSPISKDISIMKFK--------------SYTLQTESANSSTIVLKA 242
             +      VH      +D + M                  Y      + S T    A
Sbjct: 150 NGLEDEGVSVHWHGLHMRDANRMDGTVGVTQCAINPGDSFRYDFTISDSQSGTYWYHA 207


>gi|327350083|gb|EGE78940.1| ferro-O2-oxidoreductase [Ajellomyces dermatitidis ATCC 18188]
          Length = 654

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 24/178 (13%)

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS-AKAQLALTFSYL 145
                 G SR  L   V+FL +++S    +      P   S  + L   + Q       L
Sbjct: 32  TSSQAAGWSRSYLASVVIFLVLVVSFLGALRIPRSPPYYSSQNRVLGPTQQQQHPGAQRL 91

Query: 146 EE-----NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG--SIDLDR 198
                       +  +  +      P+  L+ I++V+ +      +  A+SG   I   R
Sbjct: 92  HPEAHIYRTVRTIRLNWTVTAGYRRPDGVLKRIYLVNGQFPG--PVVEARSGDRLIVDVR 149

Query: 199 QAIILNDGEVHRKSPISKDISIMKFK--------------SYTLQTESANSSTIVLKA 242
             +      VH      +D + M                  Y      + S T    A
Sbjct: 150 NGLEDEGVSVHWHGLHMRDANRMDGTVGVTQCAINPGDSFRYDFTISDSQSGTYWYHA 207


>gi|239613741|gb|EEQ90728.1| ferro-O2-oxidoreductase [Ajellomyces dermatitidis ER-3]
          Length = 654

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 52/178 (29%), Gaps = 24/178 (13%)

Query: 87  LIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLS-AKAQLALTFSYL 145
                 G SR  L   V+FL +++S    +      P   S  + L   + Q       L
Sbjct: 32  TSSQAAGWSRSYLASVVIFLVLVVSFLGALRIPRSPPYYSSQNRVLGPTQQQQHPGAQRL 91

Query: 146 EE-----NLFFRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSG--SIDLDR 198
                       +  +  +      P+  L+ I++V+ +      +  A+SG   I   R
Sbjct: 92  HPEAHIYRTVRTIRLNWTVTAGYRRPDGVLKRIYLVNGQFPG--PVVEARSGDRLIVDVR 149

Query: 199 QAIILNDGEVHRKSPISKDISIMKFK--------------SYTLQTESANSSTIVLKA 242
             +      VH      +D + M                  Y      + S T    A
Sbjct: 150 NGLEDEGVSVHWHGLHMRDANRMDGTVGVTQCAINPGDSFRYDFTISDSQSGTYWYHA 207


>gi|15672955|ref|NP_267129.1| cell division protein [Lactococcus lactis subsp. lactis Il1403]
 gi|12723913|gb|AAK05071.1|AE006331_11 cell division protein [Lactococcus lactis subsp. lactis Il1403]
          Length = 311

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 29/102 (28%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +T ++R  E+ I+   G     +  P       + +   I   +
Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPGL 251

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           I              +  +   +      F      L   I 
Sbjct: 252 IVAWAYRLAFVSLTPSLQSQKLAMFAPKEFIPAIVGLMAVIG 293


>gi|326474233|gb|EGD98242.1| P-type calcium ATPase [Trichophyton tonsurans CBS 112818]
          Length = 1214

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLV---SSSTESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L  +  +   ++  ++   +  ++  +I   +P  
Sbjct: 474 VLAEYIAKLGLTAGLVLFVVLFIKFLVHLKTIQGATAKGQAFLQIFIMAVTVIVVAVPEG 533

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M R+  L+
Sbjct: 534 LPLAVTLALAFATTRMLRDNNLV 556


>gi|187933306|ref|YP_001885579.1| ABC transporter permease [Clostridium botulinum B str. Eklund 17B]
 gi|187721459|gb|ACD22680.1| putative ABC transporter permease protein [Clostridium botulinum B
           str. Eklund 17B]
          Length = 465

 Score = 41.1 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
                S+ ++  +    + +++ ++          N L+   R  E+ ++   G  +  +
Sbjct: 299 VEGLSSITLMFVLVVLGLGSIILVLL---------NTLSIKERKYEIGVLRAIGMKKWKV 349

Query: 100 IKPVLFLAILLSIFLF-----ISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD 154
              ++  A+++++        +   + +P   + +++  A  + A            +  
Sbjct: 350 ASGLISEALMVTVICLGIGIGVGSIVAQPVSNTLLQKQIASQKEAQ----------NKPT 399

Query: 155 DDLYIKISKYNPNNTLQGI 173
           +   I     N    L+ I
Sbjct: 400 NGFMITTGNSNGETDLETI 418


>gi|255994600|ref|ZP_05427735.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
 gi|255993313|gb|EEU03402.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
          Length = 401

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++      +     L  +    E++I    G +R  +  P++ L IL+ +  F++  
Sbjct: 302 IILLMVSILIFLAIIISLYKVTFEEEIIIKRFMGHNRARIYSPIVILCILVLVLDFVASQ 361

Query: 120 II 121
           +I
Sbjct: 362 VI 363


>gi|163789838|ref|ZP_02184274.1| cell division ABC transporter, permease protein FtsX
           [Carnobacterium sp. AT7]
 gi|159874778|gb|EDP68846.1| cell division ABC transporter, permease protein FtsX
           [Carnobacterium sp. AT7]
          Length = 295

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++    F +  T  +T  +R TE+ I+   G +   +  P L    L+ +   I   
Sbjct: 175 IVALILTAVFLISNTIRITIFSRRTEIEIMKLVGATNWYIRWPFLIEGALIGLVGAIIPV 234

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYI 159
            I      T   +         F  L  N F      L +
Sbjct: 235 AILSFVYVTAYGIGTDFLKGTYFGLLAPNPFLYQVGGLML 274


>gi|182413709|ref|YP_001818775.1| permease [Opitutus terrae PB90-1]
 gi|177840923|gb|ACB75175.1| permease [Opitutus terrae PB90-1]
          Length = 798

 Score = 40.3 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           L+ ++L SS+ +    +  +    +   + ++   C  +    +  +++R  E  +    
Sbjct: 248 LRAVDLQSSTMQPGTDVATLMLLGLAGFVLLI--VCGNLANLQMARALSRTREFAVRAAL 305

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           G SR  L++P+L  + +L++       ++     + I    A+
Sbjct: 306 GASRSHLLRPLLLESTMLALAGGALGVLVTVWGNAWISSQIAQ 348


>gi|87307122|ref|ZP_01089268.1| hypothetical protein DSM3645_01675 [Blastopirellula marina DSM
           3645]
 gi|87290495|gb|EAQ82383.1| hypothetical protein DSM3645_01675 [Blastopirellula marina DSM
           3645]
          Length = 480

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 26  IAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTE 85
           +  V++I     L+ S  ++L +++ +       ++ +V+     +   N +   +R  E
Sbjct: 306 VLPVLEISNLFELIVSPIQTLLLVITV-------MICIVSGISILVSIYNSMN--DRKHE 356

Query: 86  LLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           + ++   G SR T++  +L  +++LS+   +    +
Sbjct: 357 IAVMRALGASRGTVMMVILLESVILSVGGGLIGWFV 392


>gi|242309279|ref|ZP_04808434.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524320|gb|EEQ64186.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 269

 Score = 40.3 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 17/277 (6%)

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
             G S+  +  P+  +A L++           P   +  K      +  L     + +LF
Sbjct: 2   ALGYSKSRIFLPIFSIAFLIA--SAFVLLNATPFAYAKEKVDLIVERGYLGSY--KSDLF 57

Query: 151 FRLDDDLYIKISKYNPN-NTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVH 209
            + D++ YI  +K  P   + +GI + +  + +  +I  A   + +      IL + ++ 
Sbjct: 58  IKYDNN-YIYFAKIFPLLQSAEGIQVFEVENEEVLRIIEAPKATFNEGE--WILENAKIT 114

Query: 210 RKSP----ISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFL-LNPNPNNPNYRPEL 264
              P        + + + K Y             +     ++S +      N    +   
Sbjct: 115 TIQPQLEVGKNPLWVEEQKVYKTLVGFKPKILDNIYEKQGSISIVDAFEAMNLLEGQNIN 174

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
            +  R+  +  L   LFP    L+ +  +       +   +  I + + +   V WG  +
Sbjct: 175 TQKLRASLYVLL---LFPFFAPLMMVCLSGFTPNSNRYANLGGITLGMILGILVVWGILF 231

Query: 325 IIHKIEQNPYYIP-ILYLFLFCISSIFLLMIKKKYTK 360
              ++  + +  P    +    I ++    +  +  K
Sbjct: 232 SFSRLSMSGFLQPEFSVIMPIGILALISAWLFVRLLK 268


>gi|218460845|ref|ZP_03500936.1| putative permease protein [Rhizobium etli Kim 5]
          Length = 86

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 309 FISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFC--ISSIFLLMIKKK 357
             +L  +F + W   Y  ++I+ +P YI +LY       I SI  L + K+
Sbjct: 1   MSALGYAFALRWAAFYAANQIDTDPEYIAVLYALPIVSSIVSIIFLSLHKR 51


>gi|210621280|ref|ZP_03292572.1| hypothetical protein CLOHIR_00515 [Clostridium hiranonis DSM 13275]
 gi|210154829|gb|EEA85835.1| hypothetical protein CLOHIR_00515 [Clostridium hiranonis DSM 13275]
          Length = 1081

 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 31   QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLII 89
            +++   ++V S   S+  ++    Y++   + +        +     ++ + R  E+ ++
Sbjct: 926  KVISYTDMVGSLMSSVTSIINSISYILVAFVAISLVVSSIMIGVITYISVLERKKEIGVL 985

Query: 90   DNTGTSRITLIKPV----LFLAILLSIFLFISENIIE 122
               G S+  + +        +  L  I   +   I+ 
Sbjct: 986  RAIGASKRNISQVFNAETFIIGALAGIIGIVVSLILI 1022


>gi|322385193|ref|ZP_08058840.1| cell division protein FtsX [Streptococcus cristatus ATCC 51100]
 gi|321270817|gb|EFX53730.1| cell division protein FtsX [Streptococcus cristatus ATCC 51100]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           +L+  +++ G +   +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L
Sbjct: 175 ALSDFIRVWGLVGAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNSYIRGPFL 232

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           F    + +   +   ++     +   Q   K  +A   S +E +LF 
Sbjct: 233 FEGAWIGLLGSVLPVVLVYFGYNMAYQTMNKNLVAQNLSMIEPHLFV 279


>gi|320010355|gb|ADW05205.1| protein of unknown function DUF214 [Streptomyces flavogriseus ATCC
           33331]
          Length = 860

 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGT 94
              +S+ +S+   L +  Y +     +       +   N  + +   R  E+ ++   G+
Sbjct: 252 EAAASNKDSMGSFLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGS 310

Query: 95  SRITLIKPVLFLAILLSIFLFIS 117
           SR  + + VL  A+LL +   + 
Sbjct: 311 SRKQVNRSVLVEAVLLGVVGSVL 333


>gi|326778848|ref|ZP_08238113.1| protein of unknown function DUF214 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659181|gb|EGE44027.1| protein of unknown function DUF214 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 861

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKP 102
           S+   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + 
Sbjct: 260 SMGSFLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQVNRS 318

Query: 103 VLFLAILLSIFLFIS 117
           VL  A+LL I   + 
Sbjct: 319 VLVEAVLLGIVGSVL 333


>gi|182438199|ref|YP_001825918.1| putative ABC transporter permease protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178466715|dbj|BAG21235.1| putative ABC transporter permease protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 861

 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKP 102
           S+   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + 
Sbjct: 260 SMGSFLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQVNRS 318

Query: 103 VLFLAILLSIFLFIS 117
           VL  A+LL I   + 
Sbjct: 319 VLVEAVLLGIVGSVL 333


>gi|297157745|gb|ADI07457.1| ABC transport system integral membrane protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 859

 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPV 103
           +   L I  Y +     +       +   N  + +   R  E+ ++   G+SR  + + V
Sbjct: 259 IGSFLDIMKYAMLGFAGIAVLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQVNRSV 317

Query: 104 LFLAILLSIFLFIS 117
           L  A+LL +   + 
Sbjct: 318 LIEALLLGVVGSVL 331


>gi|163840104|ref|YP_001624509.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953580|gb|ABY23095.1| cell division protein [Renibacterium salmoninarum ATCC 33209]
          Length = 304

 Score = 39.6 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 32  ILQRINLVSSSTESLNILLK----ISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
            +  ++ V    ++L  L +    ++   +   L M+      + TT  L++ +R  E  
Sbjct: 154 SVPGVDQVVDQRKALEPLFEVMNRLTAVAVGVALVMILTAWLLIATTIRLSAFSRRRETG 213

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
           I+   G S+  +  P +   ++ ++        +       I    A A    + + +
Sbjct: 214 IMRLVGASKTVIQLPFIMEGVISAVIGAGIA-WLAIWGSIKIFVEGASAANQQSIALI 270


>gi|322699738|gb|EFY91497.1| P-type calcium ATPase [Metarhizium acridum CQMa 102]
          Length = 1282

 Score = 39.6 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTES--LNILLKISGYLIPTVLPMV---TPF 67
              F      I F+   I+ L  +  ++S   S        I    I  V+  V      
Sbjct: 364 LIVFGAVVGAIFFVILFIRYLVLLKWMASKGPSNKAEAFFHILILSITVVIITVPEGLAL 423

Query: 68  CFAMETTNVLTSMNRNTELL 87
              +      T M R+  L+
Sbjct: 424 NVTVALAFATTRMLRDNNLV 443


>gi|227494929|ref|ZP_03925245.1| cell division protein FtsX [Actinomyces coleocanis DSM 15436]
 gi|226831381|gb|EEH63764.1| cell division protein FtsX [Actinomyces coleocanis DSM 15436]
          Length = 304

 Score = 39.6 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 51  KISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL 110
           K     +  V+ +       + TT  L++M R  E  I+   G S +T+  P +    + 
Sbjct: 179 KFLSLALAGVMTVAA--VLLITTTIRLSAMAREKETTIMRFVGASSLTIQLPFMIEGAIA 236

Query: 111 SIFLFISENI 120
           ++   I   +
Sbjct: 237 ALTGAILAVV 246


>gi|302534857|ref|ZP_07287199.1| ABC transporter integral membrane protein [Streptomyces sp. C]
 gi|302443752|gb|EFL15568.1| ABC transporter integral membrane protein [Streptomyces sp. C]
          Length = 849

 Score = 39.2 bits (90), Expect = 1.00,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILL 110
            +  +L         +    +  +       R  EL ++   G +R  +I+ VL  A+++
Sbjct: 266 SMSNMLLAFAGISLFVGVFLIYNTFTMLVAQRTRELALLRAVGANRGQVIRSVLAEALVV 325

Query: 111 SIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
                             ++ L       +    L
Sbjct: 326 GALSAAIGLAAGVGLAVGMRSLMDTIGAKIPAGDL 360


>gi|262375761|ref|ZP_06068993.1| lipoprotein release ABC transporter permease [Acinetobacter lwoffii
           SH145]
 gi|262309364|gb|EEY90495.1| lipoprotein release ABC transporter permease [Acinetobacter lwoffii
           SH145]
          Length = 407

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           W+    Q +N +++ + S N++          ++ +     F + +   ++ + R  E+ 
Sbjct: 265 WIETNAQLMNAITAQSLSTNMI----------IVFVAISVAFGIASVMSVSVVQRTREIG 314

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           I+  TG ++  +++  LF   +  +   +  +I+
Sbjct: 315 ILRATGATQSQILRVFLFQGAIFGLLGSVLGSIV 348


>gi|257457657|ref|ZP_05622824.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445043|gb|EEV20119.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 116

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 37/103 (35%), Gaps = 2/103 (1%)

Query: 255 PNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSI 314
               +    +L  Y  EFHK+ +       F L++   +    +  Q        +    
Sbjct: 13  KQTQDEDKRILNLYWMEFHKKFSIPFGAFFFVLLAFAISSAGKVHNQGAGFFLGLLIAVA 72

Query: 315 SFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKK 357
            + +F G   +  ++  N      +++    + +  ++++ KK
Sbjct: 73  YWALFMGGQTLCLRLNWNGTSA--MWVPNIMVFAASVVLLGKK 113


>gi|322388281|ref|ZP_08061885.1| cell division protein FtsX [Streptococcus infantis ATCC 700779]
 gi|321140953|gb|EFX36454.1| cell division protein FtsX [Streptococcus infantis ATCC 700779]
          Length = 308

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 176 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 233

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      + +     + + Q    + +    S +  N F  L   L   I 
Sbjct: 234 EGAFIGLLGAALPSALVYFIYNRVFQSVNPSLVGQNLSLITPNTFIPLMIGLLFLIG 290


>gi|313899491|ref|ZP_07833001.1| efflux ABC transporter, permease protein [Clostridium sp. HGF2]
 gi|312955779|gb|EFR37437.1| efflux ABC transporter, permease protein [Clostridium sp. HGF2]
          Length = 497

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 49/142 (34%), Gaps = 13/142 (9%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
             V++  +SL  L  +S Y    +  ++      +   N+     R  E+ ++   G ++
Sbjct: 313 EDVAAYEQSLAPLENLSTYAGYFLAVVLLVGGVILVVLNIYHIRERKYEIGVLAAIGMNK 372

Query: 97  ITLIKPVLFLAILLSIFLFISENII-----EPKCRSTIKQLSAKAQLALTFSYLEEN--- 148
             +    +   +++++   +    I      P   + ++  + +   A    + +E    
Sbjct: 373 RRIALQFICEILIVTLMAIMLGCGIGAAASVPLTNTLLQTQTVQTSAAQETDFPKEGGPQ 432

Query: 149 -LFFRLDDDL---YI-KISKYN 165
             F      +    +  I + +
Sbjct: 433 IEFGGRSKGMEKETVSYIQEIS 454


>gi|309800016|ref|ZP_07694215.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           infantis SK1302]
 gi|308116367|gb|EFO53844.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           infantis SK1302]
          Length = 308

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 176 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNSYIRGPFLL 233

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      +++     + + Q    + +    S +  + F  L   L   I 
Sbjct: 234 EGAFIGLLGAALPSVLVYFIYNRVFQSVNPSLVGQNLSLITPDTFIPLMIGLLFLIG 290


>gi|307324331|ref|ZP_07603539.1| protein of unknown function DUF214 [Streptomyces violaceusniger Tu
           4113]
 gi|306890062|gb|EFN21040.1| protein of unknown function DUF214 [Streptomyces violaceusniger Tu
           4113]
          Length = 856

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKP 102
            +   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + 
Sbjct: 256 GIGSFLDVMKYAMLGFAGIAVLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQINRS 314

Query: 103 VLFLAILLSIFLFIS 117
           VL  A+LL I   I 
Sbjct: 315 VLIEALLLGIVGSIL 329


>gi|71083417|ref|YP_266136.1| permease YjgP/YjgQ family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762160|ref|ZP_01264125.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|71062530|gb|AAZ21533.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|91717962|gb|EAS84612.1| Predicted permease YjgP/YjgQ family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 357

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           MK++  +++     S L   +    I  +  IL++I    +   S   L  +S    P+V
Sbjct: 1   MKTYIKFLINLFNISLLKIFITFFIIILITNILEQIEFFKNIDLSFFYLFFLSLLNTPSV 60

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           L  + PF F + T      +    EL +   +G + I +IK +   + +L I + I 
Sbjct: 61  LFEILPFIFLLGTQVFFIHLIDKNELQVFKYSGLNNIKIIKILGLYSFILGIIMVIF 117


>gi|315657058|ref|ZP_07909943.1| cell division protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492450|gb|EFU82056.1| cell division protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 304

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           +   +   + M+      + TT  L++M+R  E  I+   G S + +  P +    + + 
Sbjct: 179 TYLAVGLAVAMIIAAVLLITTTIRLSAMSRERETSIMRLVGASNLFVQLPFMVEGAVAAT 238

Query: 113 FLFISENIIE 122
              +    I 
Sbjct: 239 IGALGSVAIL 248


>gi|158321283|ref|YP_001513790.1| hypothetical protein Clos_2261 [Alkaliphilus oremlandii OhILAs]
 gi|158141482|gb|ABW19794.1| protein of unknown function DUF214 [Alkaliphilus oremlandii OhILAs]
          Length = 298

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           ++    +     ++   ++  G +I ++L +V  F  +      L    R  E+ I+ + 
Sbjct: 152 IKYYKELVDQLLNVAKFIRTVGLVIISILVLVAIFIISNTIKLALN--ARRQEIEIMKDV 209

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAK 135
           G +   +  P L   +LL +        I          L   
Sbjct: 210 GATNWFIRWPFLLEGMLLGLIGAALSIGIVYFGYQYAFNLITS 252


>gi|282866319|ref|ZP_06275365.1| protein of unknown function DUF214 [Streptomyces sp. ACTE]
 gi|282558905|gb|EFB64461.1| protein of unknown function DUF214 [Streptomyces sp. ACTE]
          Length = 860

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRIT 98
           +  +S+   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  
Sbjct: 256 ADKDSMGSFLDVMKYAMLGFAGIAFLVGVFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQ 314

Query: 99  LIKPVLFLAILLSIFLFIS 117
           + + VL  A+LL +     
Sbjct: 315 VNRSVLVEAVLLGVVGSAL 333


>gi|298346506|ref|YP_003719193.1| cell division protein [Mobiluncus curtisii ATCC 43063]
 gi|304389755|ref|ZP_07371714.1| cell division protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|298236567|gb|ADI67699.1| cell division protein [Mobiluncus curtisii ATCC 43063]
 gi|304326931|gb|EFL94170.1| cell division protein [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 304

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           +   +   + M+      + TT  L++M+R  E  I+   G S + +  P +    + + 
Sbjct: 179 TYLAVGLAVAMIIAAVLLITTTIRLSAMSRERETSIMRLVGASNLFVQLPFMVEGAVAAT 238

Query: 113 FLFISENIIE 122
              +    I 
Sbjct: 239 IGALGSVAIL 248


>gi|315655088|ref|ZP_07907990.1| cell division protein [Mobiluncus curtisii ATCC 51333]
 gi|315490569|gb|EFU80192.1| cell division protein [Mobiluncus curtisii ATCC 51333]
          Length = 304

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 27/70 (38%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           +   +   + M+      + TT  L++M+R  E  I+   G S + +  P +    + + 
Sbjct: 179 TYLAVGLAVAMIIAAILLITTTIRLSAMSRERETSIMRLVGASNLFVQLPFMVEGAVAAT 238

Query: 113 FLFISENIIE 122
              +    I 
Sbjct: 239 IGALGSVAIL 248


>gi|315641244|ref|ZP_07896321.1| cell division protein FtsX [Enterococcus italicus DSM 15952]
 gi|315483011|gb|EFU73530.1| cell division protein FtsX [Enterococcus italicus DSM 15952]
          Length = 294

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 30  IQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLII 89
           +Q  +  + +S    S+   ++  G +   +L  +  F   +  T  +T ++R  E+ I+
Sbjct: 146 VQDARYGDDLSDKIFSIAKGVRTWGLVGSILLLFIAMF--LISNTIRITILSRQREIQIM 203

Query: 90  DNTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENL 149
              G     +  P       + +   +   +I          ++    L   +S +  N 
Sbjct: 204 RLVGAKNSYIRWPFFLEGGWIGLLGAVIPVLIIVFGYQKFYAVANPIMLRSNYSLVTPNE 263

Query: 150 FFRL 153
           F   
Sbjct: 264 FMVP 267


>gi|116326947|ref|YP_796667.1| AraC family transcriptional regulator [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116119691|gb|ABJ77734.1| Transcriptional regulator, AraC family [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 540

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 4/120 (3%)

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I L+ N+  + +L   +  + NYR  ++     E HKRL       I G+I         
Sbjct: 150 IDLQPNENRIFYLFVLSNEDINYRIRIMGLEEFELHKRLKFITSYSIVGIIGFAVLYSFF 209

Query: 298 LVRQRKKIHPIFISL----SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              + K    IF  L     I    F                    Y      S +FL +
Sbjct: 210 GYYRFKNSTFIFFPLYVFSVILTFYFLHGRTFAEVFGNTNNLFRHSYFLFLGTSYVFLFL 269


>gi|184156106|ref|YP_001844446.1| ABC transporter permease and ATP-binding components [Lactobacillus
           fermentum IFO 3956]
 gi|183227450|dbj|BAG27966.1| ABC transporter permease and ATP-binding components [Lactobacillus
           fermentum IFO 3956]
          Length = 661

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLIIDNTGTS 95
           N VSS    +   + +   ++  V  +        +  T  ++  +R  E+ I+   G S
Sbjct: 514 NAVSSMISRIETYISLITNILAGVAGISLLVSALMIIVTMYMSVADRTKEIGILRALGES 573

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
           +  + +  +  ++++ IF  I   +I    ++      +K   
Sbjct: 574 KKDIRRMFIAESLIIGIFSAIVATVIAFVAQAGFNAALSKIAT 616


>gi|302542969|ref|ZP_07295311.1| ABC lipoprotein transporter, permease component [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460587|gb|EFL23680.1| ABC lipoprotein transporter, permease component [Streptomyces
           himastatinicus ATCC 53653]
          Length = 856

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPV 103
           +   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + V
Sbjct: 257 IGSFLDVMKYAMLGFAGIAVLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQINRSV 315

Query: 104 LFLAILLSIFLFIS 117
           L  A+LL I   I 
Sbjct: 316 LLEALLLGIVGSIL 329


>gi|239941835|ref|ZP_04693772.1| putative ABC transporter permease protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239988295|ref|ZP_04708959.1| putative ABC transporter permease protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291445282|ref|ZP_06584672.1| ABC transport system integral membrane protein [Streptomyces
           roseosporus NRRL 15998]
 gi|291348229|gb|EFE75133.1| ABC transport system integral membrane protein [Streptomyces
           roseosporus NRRL 15998]
          Length = 861

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPV 103
           +   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + V
Sbjct: 261 MGAFLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQVNRSV 319

Query: 104 LFLAILLSIFLFIS 117
           L  A+LL I   + 
Sbjct: 320 LLEAVLLGIVGSLL 333


>gi|217322881|ref|YP_002327179.1| hypothetical protein ABBFA_003303 [Acinetobacter baumannii
          AB307-0294]
 gi|213986513|gb|ACJ56812.1| hypothetical protein ABBFA_003303 [Acinetobacter baumannii
          AB307-0294]
          Length = 71

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 30/69 (43%)

Query: 3  SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
              Y+++ +  + L+    +  I    ++++   + +      +IL  I GY +P  L 
Sbjct: 2  IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDASILFSIIGYRLPEFLT 61

Query: 63 MVTPFCFAM 71
          ++ P  F +
Sbjct: 62 LILPLGFLL 70


>gi|116332388|ref|YP_802106.1| AraC family transcriptional regulator [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116126077|gb|ABJ77348.1| Transcriptional regulator, AraC family [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 540

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 37/120 (30%), Gaps = 4/120 (3%)

Query: 238 IVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRA 297
           I L+ N+  + +L   +  + NYR  ++     E HKRL       I G+I         
Sbjct: 150 IDLQPNENRIFYLFVLSNEDINYRIRIMGLEEFELHKRLKFITSYSIVGIIGFAVLYSFF 209

Query: 298 LVRQRKKIHPIFISL----SISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLLM 353
              + K    IF  L     I    F                    Y      S +FL +
Sbjct: 210 GYYRFKNSTFIFFPLYVFSVILTFYFLHGRTFAEVFGNTNNLFRHSYFLFLGTSYVFLFL 269


>gi|126650468|ref|ZP_01722691.1| hypothetical protein BB14905_07758 [Bacillus sp. B14905]
 gi|126592624|gb|EAZ86623.1| hypothetical protein BB14905_07758 [Bacillus sp. B14905]
          Length = 439

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVL 104
           + +   ++   L  V      + +  +  +M      R  E+ ++   G S   + +  L
Sbjct: 288 MNVFFLVLKIGLIFVGTIAVLIASIGIFNTMTMAVTERTREIGVLKAIGASPKLIQRLFL 347

Query: 105 -----------FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
                      F+A+++S  +  + N + P          A A   +TFS +
Sbjct: 348 MESTFIGLLGTFIAVIISYAISFAANAVLPLILKAATGEDAFATNDITFSLI 399


>gi|300790950|ref|YP_003771241.1| ABC transporter permease [Amycolatopsis mediterranei U32]
 gi|299800464|gb|ADJ50839.1| ABC transport system permease protein [Amycolatopsis mediterranei
           U32]
          Length = 815

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 64  VTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
                F +  T  L++  R  EL ++   GT+   L + VL  A+++ +       ++ P
Sbjct: 264 ALVMVFVVAGTLTLSTQQRQRELALLRAVGTTPRQLRRMVLGEALVVGLLAVGLAVVLGP 323


>gi|227515363|ref|ZP_03945412.1| ABC superfamily ATP binding cassette transporter permease and ABC
           protein [Lactobacillus fermentum ATCC 14931]
 gi|227086277|gb|EEI21589.1| ABC superfamily ATP binding cassette transporter permease and ABC
           protein [Lactobacillus fermentum ATCC 14931]
          Length = 661

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLIIDNTGTS 95
           N VSS    +   + +   ++  V  +        +  T  ++  +R  E+ I+   G S
Sbjct: 514 NAVSSMISRIETYISLITNILSGVAGISLLVSALMIIVTMYMSVADRTKEIGILRALGES 573

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
           +  + +  +  ++++ IF  I   +I    ++      +K   
Sbjct: 574 KKDIRRMFIAESLIIGIFSAIVATVIAFVAQAGFNAALSKIAT 616


>gi|299783598|gb|ADJ41596.1| ABC superfamily ATP binding cassette transporter permease and ABC
           protein [Lactobacillus fermentum CECT 5716]
          Length = 661

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLIIDNTGTS 95
           N VSS    +   + +   ++  V  +        +  T  ++  +R  E+ I+   G S
Sbjct: 514 NAVSSMISRIETYISLITNILAGVAGISLLVSALMIIVTMYMSVADRTKEIGILRALGES 573

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
           +  + +  +  ++++ IF  I   +I    ++      +K   
Sbjct: 574 KKDIRRMFIAESLIIGIFSAIVATVIAFVAQAGFNAALSKIAT 616


>gi|282866299|ref|ZP_06275345.1| protein of unknown function DUF214 [Streptomyces sp. ACTE]
 gi|282558885|gb|EFB64441.1| protein of unknown function DUF214 [Streptomyces sp. ACTE]
          Length = 842

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           T+L +       +    +  +       R  EL ++   G SR  +   VL  A ++ + 
Sbjct: 263 TILLVFAGIALFVGVFLIANTFTMLVAQRTRELALMRAVGASRRQVKWAVLMEAAVVGLI 322

Query: 114 LFIS 117
             + 
Sbjct: 323 ASVI 326


>gi|281491476|ref|YP_003353456.1| cell division permease FtsX [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375194|gb|ADA64707.1| Cell division permease protein FtsX [Lactococcus lactis subsp.
           lactis KF147]
          Length = 311

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +T ++R  E+ I+   G     +  P       + +   I   +
Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPGL 251

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           I              +  +   S    N F      L   I 
Sbjct: 252 IVSWAYRLAFVSLTPSLQSQKLSMYATNQFIPAIVGLMAVIG 293


>gi|262283018|ref|ZP_06060785.1| cell division protein FtsX [Streptococcus sp. 2_1_36FAA]
 gi|262261270|gb|EEY79969.1| cell division protein FtsX [Streptococcus sp. 2_1_36FAA]
          Length = 323

 Score = 38.4 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           +    SL   ++  G ++  +L  +    F +  T  +T ++R+ E+ I+   G     +
Sbjct: 185 TKRIFSLADFIQTWGLILAGMLIFIA--IFLISNTIRITIISRSREIQIMRLVGAKNSYI 242

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
             P L     + +   +    +     +   +   K  +A   S +   LF  +
Sbjct: 243 RGPFLLEGAWIGLLGAVMPAALVYFAYNIAYRSVNKGLVAQNLSMIAPKLFIPI 296


>gi|302874158|ref|YP_003842791.1| hypothetical protein Clocel_1272 [Clostridium cellulovorans 743B]
 gi|307689583|ref|ZP_07632029.1| hypothetical protein Ccel74_15609 [Clostridium cellulovorans 743B]
 gi|302577015|gb|ADL51027.1| protein of unknown function DUF214 [Clostridium cellulovorans 743B]
          Length = 295

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFA-METTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
                K++ +++  +  ++       +  T  LT  +R  E+ I+ N G +   +  P L
Sbjct: 162 FESFKKVTMWILLGLSVVLFAVSLFLIANTIKLTVFSRRREIAIMKNIGATDWFIRWPFL 221

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
              ++L     I   II     S +    + A
Sbjct: 222 IEGMILGFLGDIISVIILFAGYSVLYNKVSSA 253


>gi|169829801|ref|YP_001699959.1| macrolide export ATP-binding/permease [Lysinibacillus sphaericus
           C3-41]
 gi|168994289|gb|ACA41829.1| Macrolide export ATP-binding/permease protein [Lysinibacillus
           sphaericus C3-41]
          Length = 439

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVL 104
           + +   ++   L  V      + +  +  +M      R  E+ ++   G S   + +  L
Sbjct: 288 MNVFFLVLKIGLIFVGTIAVLIASIGIFNTMTMAVTERTREIGVLKAIGASPKLIQRLFL 347

Query: 105 -----------FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
                      F+A+++S  +  + N + P          A A   +TFS +
Sbjct: 348 MESTFIGLLGTFIAVIISYAISFAANAVLPLILKAATGEDAFATNDITFSLI 399


>gi|322706047|gb|EFY97629.1| P-type calcium ATPase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1259

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTES--LNILLKISGYLIPTVLPMV---TPF 67
              F      I F+   I+ L R+  ++S   S        I    I  V+  V      
Sbjct: 364 LIVFGAVVGAIFFVILFIRYLVRLKWMASKGPSNKAEEFFHILILSITVVIITVPEGLAL 423

Query: 68  CFAMETTNVLTSMNRNTELL 87
              +      T M R+  L+
Sbjct: 424 NVTVALAFATTRMLRDNNLV 443


>gi|260662636|ref|ZP_05863530.1| ABC transporter permease and ATP-binding component [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552717|gb|EEX25716.1| ABC transporter permease and ATP-binding component [Lactobacillus
           fermentum 28-3-CHN]
          Length = 661

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLIIDNTGTS 95
           N VSS    +   + +   ++  V  +        +  T  ++  +R  E+ I+   G S
Sbjct: 514 NAVSSMISRIKTYISLITNILAGVAGISLLVSALMIIVTMYMSVADRTKEIGILRALGES 573

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQL 138
           +  + +  +  ++++ IF  I   +I    ++      +K   
Sbjct: 574 KKDIRRMFIAESLIIGIFSAIVATVIAFVAQAGFNAALSKIAT 616


>gi|262089343|gb|ACY24563.1| copper-containing nitrite reductase [uncultured crenarchaeote
           76h13]
          Length = 452

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 148 NLFFRLDDDLY----IKISKYNPNNTLQGIF--IVDSRDTQ--THKIYYAQS---GSIDL 196
            ++  + + +Y    +  +   P      +F  + ++ D          A S   G    
Sbjct: 154 GVWEHISNGMYGGIIVHPANEEPAKEFYMVFSELYNNADKGPFVGTNGTAGSFDIGKFIS 213

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
           +   ++L +G  H+  P   +++ ++         + ++    +K  +    +++NP PN
Sbjct: 214 NNPDLVLTNGMAHKYVPAVGEVNKLE--------LNKDAELFKVKPGEMTRWYIINPGPN 265

Query: 257 NP 258
           + 
Sbjct: 266 DG 267


>gi|269213541|ref|ZP_06158032.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
 gi|269146393|gb|EEZ72811.1| permease, YjgP/YjgQ family [Neisseria cinerea ATCC 14685]
          Length = 182

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 61/176 (34%), Gaps = 13/176 (7%)

Query: 189 AQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLS 248
           A+S  ++ D     L +           ++S    +++ +  +      +++K +  ++ 
Sbjct: 14  AESAVLNNDGS-WQLKNIRRSTLGEDKVEVSTAAEETWPIAVKRNLMDVLLVKPDQMSVG 72

Query: 249 FL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKI 305
            L   ++   NN     +  + Y   + ++L   +   +  L++          R     
Sbjct: 73  ELTTYISHLENN----NQNTQIYAIAWWRKLVYPIAAWVMALVAFAF--TPQTTRHGNMG 126

Query: 306 HPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIFLLMIKKKY 358
             +F  + +     +    F +        P+    L    F + +++L+  ++K 
Sbjct: 127 LKLFGGICLGLLFHFAGRLFGFTSQLYGVPPFLAGALPTIAFALLAVWLIRRQEKR 182


>gi|157150897|ref|YP_001450719.1| cell division protein FtsX [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075691|gb|ABV10374.1| cell division protein FtsX [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 308

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 40  SSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITL 99
           +    SL   ++  G ++  +L  +    F +  T  +T ++R+ E+ I+   G     +
Sbjct: 170 TKRIFSLADFIQTWGLILAGMLIFIA--IFLISNTIRITIISRSREIQIMRLVGAKNSYI 227

Query: 100 IKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
             P L     + +   +    +     +   +   K  +A   S +   LF  +
Sbjct: 228 RGPFLLEGAWIGLLGAVMPAALVYFAYNIAYRSVNKGLVAQNLSMIAPKLFIPI 281


>gi|317130273|ref|YP_004096555.1| hypothetical protein Bcell_3583 [Bacillus cellulosilyticus DSM
           2522]
 gi|315475221|gb|ADU31824.1| protein of unknown function DUF214 [Bacillus cellulosilyticus DSM
           2522]
          Length = 297

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           S    +++ G+ I  ++ ++    F +  T  LT + R  E+ I+   G +   +  P  
Sbjct: 164 SATDFVRMVGFAI--IIALMFTAMFLIANTIKLTIIARKREIQIMKLVGATNGFIRWPFF 221

Query: 105 FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEEN 148
              +LL     +    I     S       +      FS+L  N
Sbjct: 222 VEGLLLGTLGAVIPIAILSYGYSNFYSSMGQQTGLDFFSFLAPN 265


>gi|313677511|ref|YP_004055507.1| hypothetical protein Ftrac_3425 [Marivirga tractuosa DSM 4126]
 gi|312944209|gb|ADR23399.1| protein of unknown function DUF214 [Marivirga tractuosa DSM 4126]
          Length = 799

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 52  ISGYLIPTVLPMVTPFCFAMETTNVLTS-MNRNTELLIIDNTGTSRITLIKPVLFLAILL 110
           I  Y++  +  +V                MNR  E+ +    G  +  ++   L  AI++
Sbjct: 285 IFIYVLLGLALVVMLSACFNYANLTTARAMNRAKEIGVRKVIGAGKKHIMAQFLMEAIII 344

Query: 111 SIFLF----ISENIIEPKCRSTIKQLSAKAQLALTF 142
           S+F F    +    + P   S    L A  +   T 
Sbjct: 345 SLFAFAIAALLVEYLHPSLNSMFTSLGAPIRFDKTN 380


>gi|224543371|ref|ZP_03683910.1| hypothetical protein CATMIT_02571 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523698|gb|EEF92803.1| hypothetical protein CATMIT_02571 [Catenibacterium mitsuokai DSM
           15897]
          Length = 302

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%)

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            V+ ++    F +  T  +T  +R+TE+ I+   G S   +  P +   I + +   I  
Sbjct: 181 FVVALIVVALFMIANTIKITITSRSTEISIMRMVGASNWYIRIPFMLEGIFIGLIGSIVP 240

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
            II                 +   +++  
Sbjct: 241 LIILAYGYKFAYVTMTSLMSSNLITFVPP 269


>gi|254384880|ref|ZP_05000216.1| ABC transporter integral membrane protein [Streptomyces sp. Mg1]
 gi|194343761|gb|EDX24727.1| ABC transporter integral membrane protein [Streptomyces sp. Mg1]
          Length = 850

 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           T+L +       +    +  +       R  EL ++   G +R  +++ VL  A+++   
Sbjct: 269 TMLLVFAGISLFVGIFLIYNTFTMLVTQRTKELALLRAVGANRGQVMRSVLAEALVVGAV 328

Query: 114 LFISENI 120
             +   I
Sbjct: 329 SAVIGLI 335


>gi|291301941|ref|YP_003513219.1| hypothetical protein Snas_4481 [Stackebrandtia nassauensis DSM
           44728]
 gi|290571161|gb|ADD44126.1| protein of unknown function DUF214 [Stackebrandtia nassauensis DSM
           44728]
          Length = 854

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMET-TNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           L+I+L    YL+     +       +   T  +    R  EL +    G  R  + + V+
Sbjct: 260 LSIILDFFNYLLLGFGTIALLVSVFLIINTFSIIVAQRTRELALFRAIGAGRGQVTRSVM 319

Query: 105 FLAILLSIFLFISENII 121
             A ++     +    +
Sbjct: 320 LEAFIIGALAAVVGMAV 336


>gi|169839875|ref|ZP_02873063.1| hypothetical protein cdivTM_22572 [candidate division TM7
           single-cell isolate TM7a]
          Length = 122

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 117 SENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPN-NTLQGIFI 175
            E  + P+    I   + +   +   S  EE +F   ++     I + N    T +   I
Sbjct: 6   LEIYVNPRALENINAQTKQVLASKPSSLTEEKVFLTNEEKDLFYIDEVNNEAATAKNFLI 65

Query: 176 VDSR-DTQTHKIYYAQSGSIDLD 197
           ++ R D     ++ A++   D  
Sbjct: 66  INKRGDNHYPIVFLAENARFDPG 88


>gi|167761000|ref|ZP_02433127.1| hypothetical protein CLOSCI_03398 [Clostridium scindens ATCC 35704]
 gi|167661379|gb|EDS05509.1| hypothetical protein CLOSCI_03398 [Clostridium scindens ATCC 35704]
          Length = 479

 Score = 37.6 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 60  VLPMVTPFCFAMETTNVLTSM-NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +L +V+   F +     L  M NR  E+ I+   G S+  +    L  A+L+    F+  
Sbjct: 328 LLLLVSSASFIILVLIFLFWMKNRTQEIGILMALGESKKRIWMQFLVEALLVGCIGFVLS 387

Query: 119 NIIEPKCRSTIKQLSAK 135
               P          A+
Sbjct: 388 MGASPFLSKATASYLAR 404


>gi|262369027|ref|ZP_06062356.1| lipoprotein release ABC transporter permease [Acinetobacter
           johnsonii SH046]
 gi|262316705|gb|EEY97743.1| lipoprotein release ABC transporter permease [Acinetobacter
           johnsonii SH046]
          Length = 407

 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 28  WVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELL 87
           W+    Q +N +++ + S N+++   G              F + +   ++ + R  E+ 
Sbjct: 265 WIETNAQLMNAITAQSLSTNMIIVFVG----------ISVAFGIASVMSVSVVQRTREIG 314

Query: 88  IIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
           I+  TG ++  +++  LF   +  +   +  +++
Sbjct: 315 ILRATGATQAQILRVFLFQGAIFGLLGSMLGSVV 348


>gi|270292343|ref|ZP_06198554.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. M143]
 gi|270278322|gb|EFA24168.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. M143]
          Length = 329

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 197 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 254

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +F     +++     + + Q   K+ +    S +  ++F  L   L   I 
Sbjct: 255 EGAFIGLFGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPLMTVLLFVIG 311


>gi|148272490|ref|YP_001222051.1| putative ABC transporter permease,involved in cell division
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830420|emb|CAN01355.1| putative ABC transporter, permease component,involved in cell
           division [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 305

 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVL----PMVTPFCFAMETTNVLTSMNRNTELLI 88
           L  +  V+   + L+ +  I      T +     M+      + TT  L++ +R  EL I
Sbjct: 156 LAGVENVTDQRQYLDQIFSILNAASLTAVGIAGLMLVAAALLIATTIRLSAFSRRRELGI 215

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +   G S   +  P +   +  ++   +  
Sbjct: 216 MRLVGASNRFIQTPFILEGVFAALIGSVLA 245


>gi|318059751|ref|ZP_07978474.1| ABC transporter integral membrane protein [Streptomyces sp.
           SA3_actG]
          Length = 839

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            VL +       +    +  +       R  EL ++   G SR  + + VL  A L+ + 
Sbjct: 267 QVLLVFAGIALFVGIFIIANTFTMLVAQRTRELALLRAVGASRRQVTRSVLTEAFLIGLV 326

Query: 114 LFISENII 121
             ++  ++
Sbjct: 327 AAVAGGVL 334


>gi|302523385|ref|ZP_07275727.1| ABC transporter integral membrane protein [Streptomyces sp. SPB78]
 gi|302432280|gb|EFL04096.1| ABC transporter integral membrane protein [Streptomyces sp. SPB78]
          Length = 839

 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            VL +       +    +  +       R  EL ++   G SR  + + VL  A L+ + 
Sbjct: 267 QVLLVFAGIALFVGIFIIANTFTMLVAQRTRELALLRAVGASRRQVTRSVLTEAFLIGLV 326

Query: 114 LFISENII 121
             ++  ++
Sbjct: 327 AAVAGGVL 334


>gi|260589186|ref|ZP_05855099.1| putative efflux ABC transporter, permease protein [Blautia hansenii
           DSM 20583]
 gi|260540267|gb|EEX20836.1| putative efflux ABC transporter, permease protein [Blautia hansenii
           DSM 20583]
          Length = 806

 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           L        S +S+  ++KI GY    ++ M+T     M  T +L  + R  EL ++   
Sbjct: 657 LSSFEGEVESLDSMMAIMKIMGYSFLLLIGMITFMN--MANTMILNVITRKRELGVLQAV 714

Query: 93  GTSRITLIKPVLFLAILLSIFLFISENII-EPKCRSTI 129
           G +   L K +    +L ++   +   ++  P      
Sbjct: 715 GMTNQQLNKMLRNEGLLFTLGSIVISLVVGIPAGYGLF 752


>gi|227874897|ref|ZP_03993050.1| cell division protein FtsX [Mobiluncus mulieris ATCC 35243]
 gi|269976499|ref|ZP_06183484.1| cell division protein FtsX [Mobiluncus mulieris 28-1]
 gi|306818193|ref|ZP_07451924.1| cell division protein FtsX [Mobiluncus mulieris ATCC 35239]
 gi|307701721|ref|ZP_07638735.1| efflux ABC transporter, permease protein [Mobiluncus mulieris
           FB024-16]
 gi|227844672|gb|EEJ54828.1| cell division protein FtsX [Mobiluncus mulieris ATCC 35243]
 gi|269935300|gb|EEZ91849.1| cell division protein FtsX [Mobiluncus mulieris 28-1]
 gi|304649157|gb|EFM46451.1| cell division protein FtsX [Mobiluncus mulieris ATCC 35239]
 gi|307612979|gb|EFN92234.1| efflux ABC transporter, permease protein [Mobiluncus mulieris
           FB024-16]
          Length = 304

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 28/70 (40%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSI 112
           +   I   + M+      + TT  L++M+R  E  I+   G S + +  P +    + + 
Sbjct: 179 TMLSIGLAVAMIVAAVLLITTTIRLSAMSRERETSIMRLVGASNLFVQLPFMVEGAIAAT 238

Query: 113 FLFISENIIE 122
              ++   + 
Sbjct: 239 IGALAAVGVL 248


>gi|333022727|ref|ZP_08450791.1| putative ABC transporter integral membrane protein [Streptomyces
           sp. Tu6071]
 gi|332742579|gb|EGJ73020.1| putative ABC transporter integral membrane protein [Streptomyces
           sp. Tu6071]
          Length = 839

 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
            VL +       +    +  +       R  EL ++   G SR  + + VL  A L+ + 
Sbjct: 267 QVLLVFAGIALFVGIFIIANTFTMLVAQRTRELALLRAVGASRRQVTRSVLTEAFLIGLV 326

Query: 114 LFISENII 121
             ++  ++
Sbjct: 327 AAVAGGVL 334


>gi|213403750|ref|XP_002172647.1| calcium-transporting ATPase [Schizosaccharomyces japonicus yFS275]
 gi|212000694|gb|EEB06354.1| calcium-transporting ATPase [Schizosaccharomyces japonicus yFS275]
          Length = 1304

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 27/70 (38%)

Query: 18  MSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
           M   F + I +++++    +   S  +    +L +S  L+   +P   P    +      
Sbjct: 481 MLLFFALIIEFLVRLRNNHDSSKSKGQEFMQILIVSITLLVVAVPEGLPLAVTLALAFAT 540

Query: 78  TSMNRNTELL 87
             M ++  L+
Sbjct: 541 NRMQKDNNLV 550


>gi|83772473|dbj|BAE62602.1| unnamed protein product [Aspergillus oryzae]
          Length = 819

 Score = 37.2 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     YI    G    +    I+FI ++  +       +   +    L  IS  ++   
Sbjct: 335 LNVLAKYI-ANFGGLAALVLFIILFIKFLTSLPHSSLTPTEKGQQFLDLFIISLTVVVIA 393

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           +P   P    +      T M ++  L+ + + 
Sbjct: 394 VPEGLPLTVTLALAFATTRMLKDHNLVRMLSA 425


>gi|328882940|emb|CCA56179.1| putative ABC transporter integral membrane protein [Streptomyces
           venezuelae ATCC 10712]
          Length = 843

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVL----FL 106
            +  VL         +    +  +       R  EL ++   G SR  + + VL     +
Sbjct: 261 ALNQVLLGFAGIALFVGIFLISNTFTMLVAQRTKELALMRAVGASRKQITRSVLAEAGLV 320

Query: 107 AILLSIFLFISENIIEPKCRSTIKQLSAKA 136
            +L S   ++    +    RS +     K 
Sbjct: 321 GLLASAVGYVLGIGLAVALRSGMNAFDLKI 350


>gi|207109665|ref|ZP_03243827.1| hypothetical protein HpylH_10769 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 109

 Score = 37.2 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 16  FLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTN 75
           FL+  L +      I  L+  + +     S N+++    Y I   L    P    +    
Sbjct: 15  FLIVLLALELFFVGIDSLKYADKMPD---SANMIILFFTYDILFALNYTLPISLLLAMVL 71

Query: 76  VLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
              S  ++ +   + + G S+  ++ P+  +++  +  
Sbjct: 72  FYISFIKSNQYTALLSIGFSKCQILSPIFLISLFFTAV 109


>gi|299538228|ref|ZP_07051513.1| macrolide export ATP-binding/permease protein [Lysinibacillus
           fusiformis ZC1]
 gi|298726430|gb|EFI67020.1| macrolide export ATP-binding/permease protein [Lysinibacillus
           fusiformis ZC1]
          Length = 439

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVL 104
           + +   ++   L  V      + +  +  +M      R  E+ ++   G S   + +  L
Sbjct: 288 MNVFFLVLKIGLIFVGTIAVLIASIGIFNTMTMAVTERTREIGVLKAIGASPKLIQRLFL 347

Query: 105 -----------FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYL 145
                       +A+++S  +  + N   P          A A   +TFS +
Sbjct: 348 MESTFIGIFGTLIAVVISYAISFAANAALPLILKAATGEEAFATNDITFSLI 399


>gi|297583385|ref|YP_003699165.1| hypothetical protein Bsel_1081 [Bacillus selenitireducens MLS10]
 gi|297141842|gb|ADH98599.1| protein of unknown function DUF214 [Bacillus selenitireducens
           MLS10]
          Length = 297

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVL 104
           S    +++ G ++  +L ++    F +  T  +T + R  E+ I+   G +   +  P  
Sbjct: 164 SATDFVRLVGIVL--ILGLIFTAVFLIANTIKITIIARKREIQIMKLVGATNAFIRWPFF 221

Query: 105 FLAILLSIFLFISENIIEPKCRSTIK 130
              +LL IF  +   I+         
Sbjct: 222 VEGLLLGIFGSLLPIIVLSYGYDQFY 247


>gi|42557785|emb|CAF28758.1| putative copper-containing nitrite reductase [uncultured
           crenarchaeote]
          Length = 537

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 148 NLFFRLDDDLY----IKISKYNPNNTLQGIF--IVDSRDTQ--THKIYYAQS---GSIDL 196
            ++  + + +Y    +  +   P      +F  I +S D          A S   G    
Sbjct: 152 GVWEHISNGMYGGIVVHPTNEEPAKEFYMVFSEIYNSADKGPFVGTNGTAGSFDIGKFIS 211

Query: 197 DRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPN 256
           +   ++L +G  H+  P   +++ ++         + ++    +K  +    +++NP PN
Sbjct: 212 NNPDLVLTNGMSHKYVPAVGEVNKLE--------LNKDAEIFKVKPGELTRWYIVNPGPN 263

Query: 257 NP 258
           + 
Sbjct: 264 DG 265


>gi|306825596|ref|ZP_07458935.1| cell division protein FtsX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431957|gb|EFM34934.1| cell division protein FtsX [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 311

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 179 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGARNGYIRGPFLL 236

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      +++     + + Q   K+ +    S +  ++F  L   L   I 
Sbjct: 237 EGAFIGLLGAAIPSVLVFFVYNIVYQSVNKSLVGQNLSMITPDVFVPLMTVLLFVIG 293


>gi|21221549|ref|NP_627328.1| ABC transporter integral membrane protein [Streptomyces coelicolor
           A3(2)]
 gi|10241793|emb|CAC09551.1| putative ABC transport system integral membrane protein
           [Streptomyces coelicolor A3(2)]
          Length = 854

 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRIT 98
              E +   + +  Y +     +       +   N  + +   R  E+ ++   G+SR  
Sbjct: 253 EGREDVGEFMDVIKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGSSRRQ 311

Query: 99  LIKPVLFLAILLSIFLFIS 117
           + + VL  A+LL +   + 
Sbjct: 312 VNRSVLVEALLLGVVGSVL 330


>gi|256787261|ref|ZP_05525692.1| ABC transport system integral membrane protein [Streptomyces
           lividans TK24]
 gi|289771156|ref|ZP_06530534.1| ABC transport system integral membrane protein [Streptomyces
           lividans TK24]
 gi|289701355|gb|EFD68784.1| ABC transport system integral membrane protein [Streptomyces
           lividans TK24]
          Length = 854

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRIT 98
              E +   + +  Y +     +       +   N  + +   R  E+ ++   G+SR  
Sbjct: 253 EGREDVGEFMDVIKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGSSRRQ 311

Query: 99  LIKPVLFLAILLSIFLFIS 117
           + + VL  A+LL +   + 
Sbjct: 312 VNRSVLVEALLLGVVGSVL 330


>gi|170782439|ref|YP_001710772.1| putative cell division protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157008|emb|CAQ02180.1| putative cell division protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 305

 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVL----PMVTPFCFAMETTNVLTSMNRNTELLI 88
           L  +  V+   + L+ +  I      T +     M+      + TT  L++ +R  EL I
Sbjct: 156 LAGVESVTDQRQYLDQIFSILNAASLTAVGIAGLMLVAAALLIATTIRLSAFSRRRELGI 215

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +   G S   +  P +   +  ++   +  
Sbjct: 216 MRLVGASNRFIQTPFILEGVFAALIGSVLA 245


>gi|296134228|ref|YP_003641475.1| protein of unknown function DUF214 [Thermincola sp. JR]
 gi|296032806|gb|ADG83574.1| protein of unknown function DUF214 [Thermincola potens JR]
          Length = 295

 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ +     F + TT  LT   R  E+ I+   G +   +  P L   ++L     +   
Sbjct: 177 IVLLALAAIFLIATTIRLTVFARRKEIQIMKMIGATNWFIRWPFLLEGMILGFVGALLAV 236

Query: 120 IIEPKCRSTIKQLSAK 135
           I+      T+     +
Sbjct: 237 IVVCFAYLTLADYLQR 252


>gi|297193945|ref|ZP_06911343.1| ABC transport system integral membrane protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197723502|gb|EDY67410.1| ABC transport system integral membrane protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 856

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 41  SSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRIT 98
           S  E +   L +  Y +     +       +   N  + +   R  E+ ++   G+SR  
Sbjct: 253 SGREEVGSFLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQ 311

Query: 99  LIKPVLFLAILLSIFLFI 116
           + + VL  A+LL +   I
Sbjct: 312 VNRSVLVEALLLGLVGSI 329


>gi|322374636|ref|ZP_08049150.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. C300]
 gi|321280136|gb|EFX57175.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. C300]
          Length = 329

 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 197 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 254

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      +++     + + Q   K+ +    S +  ++F  L   L   I 
Sbjct: 255 EGAFIGLLGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPLMTVLLFLIG 311


>gi|297250818|ref|ZP_06934295.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
 gi|296837906|gb|EFH21844.1| permease, YjgP/YjgQ family [Neisseria polysaccharea ATCC 43768]
          Length = 188

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 64/190 (33%), Gaps = 15/190 (7%)

Query: 178 SRDTQTHKIYYAQ-SGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSS 236
            R+ +      A+   ++     +  L +           ++S    +S+ +  +     
Sbjct: 7   QRNDKNELTQAAEAESAVLNTDGSWQLKNIRRSILGEDKVEVSTAAEESWPISVKRNLMD 66

Query: 237 TIVLKANDQNLSFL---LNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGLISIVAA 293
            +++K +  ++  L   +    NN     +  + Y   + ++L   +   +  L++    
Sbjct: 67  VLLVKPDQMSVGELTTYIRHLQNNS----QNTQIYAIAWWRKLVYPVAAWVMALVAFAF- 121

Query: 294 DKRALVRQRKKIHPIFISLSISFGVFWG---FSYIIHKIEQNPYYIPILYLFLFCISSIF 350
                 R       +F  + +     +    F +        P+   IL   LF + ++ 
Sbjct: 122 -TPQTTRHGNMGLKLFGGICLGLLFHFAGRLFGFAGQLYGVPPFLAGILPTALFALLAV- 179

Query: 351 LLMIKKKYTK 360
             +I+K+  +
Sbjct: 180 -RLIRKQEKR 188


>gi|237718006|ref|ZP_04548487.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452647|gb|EEO58438.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 380

 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 265 LETYRSEFHKRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSY 324
           +  +++E+HK++T  L  ++F  I    A    ++R+     P+ +S+ + F +++    
Sbjct: 114 IRKHKTEWHKKITISLSCLLFFFIG---APLGGIIRKGGLGMPVIVSV-LVFIIYYIIDN 169

Query: 325 IIHKIEQNPYYIPILYLFLFCISSI 349
             +K+ ++  +I  +++ ++  S++
Sbjct: 170 TGYKMARDGKWI--VWMGMWTSSAV 192


>gi|302555138|ref|ZP_07307480.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302472756|gb|EFL35849.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 180

 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 274 KRLTQWLFPVIFGLISIVAADKRALVRQRKKIHPIFISLSISFGVFWGFSYIIHKIEQNP 333
            RL   L    FGL ++V        R  ++ H    S+    GV    + ++    Q+ 
Sbjct: 61  DRLGGALICFSFGLPAVVGGAWPLFARGGRR-HAKAASVVRGHGVGMAGAAVLTLWAQSA 119

Query: 334 YYIPILYLFLFCISSIFLL 352
              P L+        + LL
Sbjct: 120 NDWP-LWSIPAIWGPLALL 137


>gi|315612840|ref|ZP_07887751.1| cell division protein FtsX [Streptococcus sanguinis ATCC 49296]
 gi|315314950|gb|EFU62991.1| cell division protein FtsX [Streptococcus sanguinis ATCC 49296]
          Length = 311

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 179 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 236

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      +++     + + Q   K+ +    S +  ++F  L   L   I 
Sbjct: 237 EGAFIGLLGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPLMTVLLFVIG 293


>gi|297200239|ref|ZP_06917636.1| ABC transporter integral membrane protein [Streptomyces sviceus
           ATCC 29083]
 gi|197717007|gb|EDY61041.1| ABC transporter integral membrane protein [Streptomyces sviceus
           ATCC 29083]
          Length = 856

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            + +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + VL  
Sbjct: 260 FMNVMKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAVGSSRGQVNRSVLVE 318

Query: 107 AILLSIFLFIS 117
           A+LL +F  + 
Sbjct: 319 ALLLGVFGSVL 329


>gi|19114802|ref|NP_593890.1| vacuolar calcium transporting P-type ATPase, Pmc1
           [Schizosaccharomyces pombe 972h-]
 gi|74624462|sp|Q9HDW7|ATC2_SCHPO RecName: Full=Calcium-transporting ATPase 2
 gi|12140658|emb|CAC21470.1| vacuolar calcium transporting P-type ATPase, Pmc1
           [Schizosaccharomyces pombe]
          Length = 1292

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/79 (11%), Positives = 30/79 (37%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +  +G +       ++ I +++++    +   +  +    +L +S  L+   +P   P  
Sbjct: 449 IAKLGGAASALLFIVLLIEFLVRLKSNDSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLA 508

Query: 69  FAMETTNVLTSMNRNTELL 87
             +        M ++  L+
Sbjct: 509 VTLALAFATNRMQKDNNLV 527


>gi|295838341|ref|ZP_06825274.1| ABC lipoprotein transporter, permease component [Streptomyces sp.
           SPB74]
 gi|197695862|gb|EDY42795.1| ABC lipoprotein transporter, permease component [Streptomyces sp.
           SPB74]
          Length = 855

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLI 88
           ++L +      +++     L +  Y +     +       +   N  + +   R  EL +
Sbjct: 243 RLLTQQESADENSKDTASFLDVMKYALLGFAGIAFLVGIFL-IVNTFSMLVAQRTRELGL 301

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           +   G+SR  + + VL  A+LL +   + 
Sbjct: 302 LRAVGSSRRQVNRSVLVEALLLGVVGSVL 330


>gi|42527544|ref|NP_972642.1| lipoprotein releasing system, permease protein, putative [Treponema
           denticola ATCC 35405]
 gi|41818129|gb|AAS12553.1| lipoprotein releasing system, permease protein, putative [Treponema
           denticola ATCC 35405]
          Length = 448

 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  +V      + +  V+  M R  E+ I+   G    ++    L   +L S+   I   
Sbjct: 290 MFLIVLVASANISSAIVMLVMERRREIAILKAAGAHPSSISLAFLLAGLLTSLGGIILGM 349

Query: 120 IIEPKCRSTIKQLSA 134
            +       I ++ A
Sbjct: 350 PLGILAAIHINEIFA 364


>gi|152977394|ref|YP_001376911.1| hypothetical protein Bcer98_3722 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152026146|gb|ABS23916.1| protein of unknown function DUF214 [Bacillus cytotoxicus NVH
           391-98]
          Length = 297

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIID 90
           Q+ +  + V  +  ++ I+L I+G L   +        F +  T  +T   R+TE+ I+ 
Sbjct: 158 QVEKLFDTV-KTGRNIGIVL-IAGLLFTAM--------FLISNTIKITIYARSTEIEIMK 207

Query: 91  NTGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLF 150
             G +   +  P L   + L I   I   I+     ++++ +  +      F  L  N F
Sbjct: 208 LVGATNWFIRWPFLLEGLFLGILGSIIPIIVILSSYNSLQGMFNEKLGGTIFELLPYNPF 267

Query: 151 FRLDDDLYIKIS 162
                 L + I 
Sbjct: 268 VFQLAGLLVLIG 279


>gi|116622421|ref|YP_824577.1| hypothetical protein Acid_3318 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225583|gb|ABJ84292.1| protein of unknown function DUF214 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 835

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 60  VLPMVTPFCFA-METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           ++ +V       +    +  +++R  E+ +    G SR  L++ +L  ++++S+    + 
Sbjct: 306 MVGLVLLIACFNVANLLIARAVSRQKEIAVRLAVGASRWQLLRQLLIESLVMSVVGGAAG 365

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEE 147
             +       I+ L            L  
Sbjct: 366 LFL---AVVMIRGLLHFLPGDEAALMLRA 391


>gi|325474498|gb|EGC77685.1| lipoprotein releasing system [Treponema denticola F0402]
          Length = 448

 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           +  +V      + +  V+  M R  E+ I+   G    ++    L   +L S+   I   
Sbjct: 290 MFLIVLVASANISSAIVMLVMERRREIAILKAAGAHPSSISLAFLLAGLLTSLGGIILGM 349

Query: 120 IIEPKCRSTIKQLSA 134
            +       I ++ A
Sbjct: 350 PLGILAAIHINEIFA 364


>gi|229541528|ref|ZP_04430588.1| protein of unknown function DUF214 [Bacillus coagulans 36D1]
 gi|229325948|gb|EEN91623.1| protein of unknown function DUF214 [Bacillus coagulans 36D1]
          Length = 294

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 35/98 (35%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           ++ ++    F +  T  +T   R  E+ I+   G +   +  P L   + L I   I   
Sbjct: 174 IIALLLTAMFLISNTIKITIFARRKEIEIMKLVGATNWFIRWPFLLEGLWLGILGSILPI 233

Query: 120 IIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
           ++      ++ ++            L+ + F    D L
Sbjct: 234 VLISFGYYSVYKIVEPKLQNNIIHMLDISPFIYGVDGL 271


>gi|299542036|ref|ZP_07052355.1| hypothetical protein BFZC1_23823 [Lysinibacillus fusiformis ZC1]
 gi|298725459|gb|EFI66104.1| hypothetical protein BFZC1_23823 [Lysinibacillus fusiformis ZC1]
          Length = 184

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 13  GRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCF--- 69
             + L     +VF+ W   + Q  N++     S  I L +   L P +L +         
Sbjct: 65  LMASLGGSCVLVFVVWNAPLSQPRNIIGGHFISAFIGLAMYSLLGPNILSISLGVGLTIF 124

Query: 70  AMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            M    V+        ++II   G     L+ PVL  A+++  F  +  N+
Sbjct: 125 FMAFLGVIHPPAGANPIIIILG-GYGWSYLLTPVLIGAVIIVFFGLLINNL 174


>gi|15902711|ref|NP_358261.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           pneumoniae R6]
 gi|15458254|gb|AAK99471.1| Cell division protein FtsX [Streptococcus pneumoniae R6]
          Length = 329

 Score = 36.9 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G  I  +L  +    F +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 197 LASFIRVWGLGIAALLIFIA--AFLISNTIRITIISRSREIQIMRLVGAKNSYIRGPFLL 254

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +   I+ +++       + Q   K+ +    S +  +LF  L   L   I 
Sbjct: 255 EGAFIGLLGAIAPSVLVFIVYQIVYQSVNKSLVGQNLSMISPDLFSPLMIALLFVIG 311


>gi|86604883|ref|YP_473646.1| permease [Synechococcus sp. JA-3-3Ab]
 gi|86553425|gb|ABC98383.1| putative permease [Synechococcus sp. JA-3-3Ab]
          Length = 305

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSR 96
           + +      +  +L++    I  VL +       + TT  L  M R  E+ ++   G + 
Sbjct: 159 DRIVEQLAQIQEVLRLGSLSITGVLALTA--VAVITTTIRLVVMARRREIEVMQLVGATA 216

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKA 136
             +  P +    L  +   +    +    +  +++   + 
Sbjct: 217 TWIYLPFILQGCLFGVVSALGAWGLVLGSQQLLQEALEQL 256


>gi|116511802|ref|YP_809018.1| cell division protein FtsX [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107456|gb|ABJ72596.1| cell division protein FtsX [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 311

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 32/102 (31%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +T ++R  E+ I+   G     +  P       + +   I  ++
Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPSL 251

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           I              +  +   S  E + F      L   I 
Sbjct: 252 IVAWAYRLAFVSLTPSLQSQKLSMYETSEFIPAIVGLMAIIG 293


>gi|28493167|ref|NP_787328.1| cell division protein FtsX [Tropheryma whipplei str. Twist]
 gi|28476207|gb|AAO44297.1| cell division protein FtsX [Tropheryma whipplei str. Twist]
          Length = 303

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF----CFAMETTNVLTSMNRNTELLI 88
           +  ++ V    + LN +  I      T + +           + TT  L++  R  E+ I
Sbjct: 154 ISGVDSVVDQRQYLNQIFYILNLASVTSISIAAVMLIAAVMLIATTIRLSAFTRRKEIEI 213

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   G S   +  P +   I  +    +  +I
Sbjct: 214 MRLVGASNFFVQAPFVLEGIFAASIGALLSSI 245


>gi|329941163|ref|ZP_08290442.1| ABC transporter transmembrane subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329299694|gb|EGG43593.1| ABC transporter transmembrane subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 859

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + VL  
Sbjct: 263 FLDVMKYAMLGFAGVAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGSSRRQVNRSVLVE 321

Query: 107 AILLSIFLFIS 117
           A+LL +   + 
Sbjct: 322 ALLLGVVGSVL 332


>gi|239930823|ref|ZP_04687776.1| ABC transporter integral membrane protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439191|ref|ZP_06578581.1| ABC transporter integral membrane protein [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342086|gb|EFE69042.1| ABC transporter integral membrane protein [Streptomyces ghanaensis
           ATCC 14672]
          Length = 842

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 61  LPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           L +       + T  +  +       R  EL ++   G SR  + + VL  A ++     
Sbjct: 267 LLVFAGIALFVGTFIIANTFTMLVAQRTRELALMRAVGASRRQVTRSVLIEAFVVGTVAA 326

Query: 116 ISENI 120
           ++  +
Sbjct: 327 VAGLV 331


>gi|118590505|ref|ZP_01547907.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
 gi|118436968|gb|EAV43607.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
          Length = 919

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 32/195 (16%)

Query: 97  ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDD 156
           I L  P LF   +L++      N I       +   +   +     S     L F  +  
Sbjct: 280 IRLFTPFLFYTAILAVGAAFLVNRITSAGLGRLLTYAMSLRQDKVVSPPPPGLIFEFNKL 339

Query: 157 LYIK------ISKYNP------NNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILN 204
             +       +   +       + ++ G+ +                     + + + +N
Sbjct: 340 ATMFQAAFESVRNRDAQFKDMIDGSMHGVLVH-------------------ANHRILYVN 380

Query: 205 DGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPEL 264
           D  +        D   +   S TL   +    + +    +   +    P         + 
Sbjct: 381 DALLKMCGYEPGDPKQLV-DSPTLVLYAPEEHSRLRSYYNMRENGSGAPRAYEVKGIRKD 439

Query: 265 LETYRSEFHKRLTQW 279
            ET   E H RLT+W
Sbjct: 440 GETLWLEQHVRLTEW 454


>gi|28572720|ref|NP_789500.1| cell division protein FtsX [Tropheryma whipplei TW08/27]
 gi|28410853|emb|CAD67238.1| cell division protein FtsX [Tropheryma whipplei TW08/27]
          Length = 303

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 33  LQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF----CFAMETTNVLTSMNRNTELLI 88
           +  ++ V    + LN +  I      T + +           + TT  L++  R  E+ I
Sbjct: 154 ISGVDSVVDQRQYLNQIFYILNLASVTSISIAAVMLIAAVMLIATTIRLSAFTRRKEIEI 213

Query: 89  IDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           +   G S   +  P +   I  +    +  +I
Sbjct: 214 MRLVGASNFFVQAPFVLEGIFAASIGALLSSI 245


>gi|302551939|ref|ZP_07304281.1| ABC transporter integral membrane protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302469557|gb|EFL32650.1| ABC transporter integral membrane protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 844

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILL 110
            +  VL         +    +  +       R  E+ ++   G SR  + + VL  A L+
Sbjct: 261 SLKQVLLGFAGIALFVGVFLISNTFTMLVAQRTKEIALMRAVGASRRQITRSVLAEAALV 320

Query: 111 SIFLFISENII 121
            +       ++
Sbjct: 321 GLVASAIGFVL 331


>gi|261338114|ref|ZP_05965998.1| putative cell division protein [Bifidobacterium gallicum DSM 20093]
 gi|270276736|gb|EFA22590.1| putative cell division protein [Bifidobacterium gallicum DSM 20093]
          Length = 307

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 62  PMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
            MV        TT  +++ +R+ E  I+   G S  T+  P +   ++ S+   +   +
Sbjct: 191 VMVLVAIMLTGTTIRMSAASRSEETEIMRLVGASNWTIRLPFILEGVIASLLGSVLSCV 249


>gi|158520526|ref|YP_001528396.1| hypothetical protein Dole_0509 [Desulfococcus oleovorans Hxd3]
 gi|158509352|gb|ABW66319.1| protein of unknown function DUF1239 [Desulfococcus oleovorans Hxd3]
          Length = 190

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 35/115 (30%)

Query: 94  TSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
            S   +I     L  ++ + +      + P            +   ++ ++++E      
Sbjct: 7   ISLFLMITVFAALGAVIYLLVQSRPLSVPPAATEQADTGVDISMTGVSQTFVQEGRISHT 66

Query: 154 DDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEV 208
                  +   +     + + +    +  T  +  A+ G +  +     L+ G V
Sbjct: 67  LTADTASLLARDKKAVFENVTLTFLAEDGTPSVVTAKQGELSTETGDATLSGGVV 121


>gi|306829188|ref|ZP_07462378.1| cell division protein FtsX [Streptococcus mitis ATCC 6249]
 gi|304428274|gb|EFM31364.1| cell division protein FtsX [Streptococcus mitis ATCC 6249]
          Length = 311

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 179 LASFIRVWGLIIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNSYIRGPFLL 236

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +F     +++     + + Q   K+ +    S +  +LF  L   L   I 
Sbjct: 237 EGAFIGLFGAAIPSVLVFFIYNMVYQSVNKSLVGQNLSMITPDLFIPLMTVLLFVIG 293


>gi|333026441|ref|ZP_08454505.1| putative ABC transporter integral membrane protein [Streptomyces
           sp. Tu6071]
 gi|332746293|gb|EGJ76734.1| putative ABC transporter integral membrane protein [Streptomyces
           sp. Tu6071]
          Length = 838

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            L +  Y +     +       +   N  + +   R  EL ++   G+SR  + + VL  
Sbjct: 244 FLDVMKYALLGFAGIAFLVGIFL-IVNTFSMLVAQRTRELGLLRAVGSSRRQVNRSVLVE 302

Query: 107 AILLSIFLFIS 117
           A+LL +   + 
Sbjct: 303 ALLLGVVGSVL 313


>gi|242008257|ref|XP_002424923.1| sodium antiporter, putative [Pediculus humanus corporis]
 gi|212508537|gb|EEB12185.1| sodium antiporter, putative [Pediculus humanus corporis]
          Length = 670

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 307 PIFISLSISFGVFWGFSYIIHKIEQNPYYIPILYLFLFCISSIFLL 352
           P+ I +   FG+ WGF      ++ +P+ IP+  L LFC  +I +L
Sbjct: 376 PVSIIMGFGFGILWGFLSKFVPVKDDPFVIPLRVLLLFCGGTIAVL 421


>gi|125624348|ref|YP_001032831.1| cell division protein ftsX-like protein [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493156|emb|CAL98120.1| cell division protein ftsX homolog [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071132|gb|ADJ60532.1| cell division protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 311

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 24/67 (35%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +T ++R  E+ I+   G     +  P       + +   I  ++
Sbjct: 192 ILLIFVAVFLISNTIRITILSRQREIQIMRLVGAKNGYIRWPFFLEGAWVGLLGSIIPSL 251

Query: 121 IEPKCRS 127
           I      
Sbjct: 252 IVAWAYR 258


>gi|52081526|ref|YP_080317.1| acetoin transport system substrate binding protein YtrF [Bacillus
           licheniformis ATCC 14580]
 gi|52786905|ref|YP_092734.1| YtrF [Bacillus licheniformis ATCC 14580]
 gi|52004737|gb|AAU24679.1| possible acetoin transport system substrate binding protein YtrF
           [Bacillus licheniformis ATCC 14580]
 gi|52349407|gb|AAU42041.1| YtrF [Bacillus licheniformis ATCC 14580]
          Length = 443

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 20/119 (16%)

Query: 35  RINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLII 89
            ++ ++   +S+N+      + I  +   V      +    +  +M      R  E+ I+
Sbjct: 280 YVDSITKKLDSINLF--FMAFKIGLIFVGV--IAVFISAIGIFNTMTMAVTERTQEIGIM 335

Query: 90  DNTGTSRITLIKPVLF-----------LAILLSIFLFISENIIEPKCRSTIKQLSAKAQ 137
              G S   + K  L            L I++S  +    N I P   S++ +  A A 
Sbjct: 336 KAIGASPNVIRKMFLLESAYIGILGSVLGIIISYGVSFLVNKIIPVILSSVSEGEASAA 394


>gi|294629784|ref|ZP_06708344.1| ABC lipoprotein transporter, permease component [Streptomyces sp.
           e14]
 gi|292833117|gb|EFF91466.1| ABC lipoprotein transporter, permease component [Streptomyces sp.
           e14]
          Length = 859

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 3/83 (3%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGT 94
            +  ++ + L   L +  Y +     +       +   N  + +   R  E+ ++   G+
Sbjct: 251 EVADANRKELGSFLDVMKYAMLGFAGIAFLVGIFL-IINTFSMLVTQRTREIGLMRAIGS 309

Query: 95  SRITLIKPVLFLAILLSIFLFIS 117
           SR  + + VL  A+LL +   + 
Sbjct: 310 SRKQVNRSVLAEALLLGVTGSVL 332


>gi|318060489|ref|ZP_07979212.1| ABC transporter integral membrane protein [Streptomyces sp.
           SA3_actG]
          Length = 855

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            L +  Y +     +       +   N  + +   R  EL ++   G+SR  + + VL  
Sbjct: 261 FLDVMKYALLGFAGIAFLVGIFL-IVNTFSMLVAQRTRELGLLRAVGSSRRQVNRSVLVE 319

Query: 107 AILLSIFLFIS 117
           A+LL +   + 
Sbjct: 320 ALLLGVVGSVL 330


>gi|315606124|ref|ZP_07881155.1| cell division protein [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312406|gb|EFU60492.1| cell division protein [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 304

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           MV      + TT  L++M+R  E  I+   G S + +  P +    L ++   +   
Sbjct: 189 MVVAAVLLISTTIRLSAMSREQETQIMRYVGASNLFIQAPFMIEGALAALVGAVFAI 245


>gi|302519745|ref|ZP_07272087.1| ABC transporter integral membrane protein [Streptomyces sp. SPB78]
 gi|302428640|gb|EFL00456.1| ABC transporter integral membrane protein [Streptomyces sp. SPB78]
          Length = 855

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            L +  Y +     +       +   N  + +   R  EL ++   G+SR  + + VL  
Sbjct: 261 FLDVMKYALLGFAGIAFLVGIFL-IVNTFSMLVAQRTRELGLLRAVGSSRRQVNRSVLVE 319

Query: 107 AILLSIFLFIS 117
           A+LL +   + 
Sbjct: 320 ALLLGVVGSVL 330


>gi|26553541|ref|NP_757475.1| permease [Mycoplasma penetrans HF-2]
 gi|26453547|dbj|BAC43879.1| predicted permeases [Mycoplasma penetrans HF-2]
          Length = 1786

 Score = 36.9 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/119 (9%), Positives = 35/119 (29%), Gaps = 5/119 (4%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNT-ELLIIDNTGTS 95
           NL+++      ++          ++ ++      + +  +   + +N   L +    G S
Sbjct: 863 NLLTARISYPRVIAGYVNIFAIILIVVLMVIGIYLSSLLIKIYVEKNRIPLAVAKANGIS 922

Query: 96  RITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLD 154
              +   +    I  +    I   ++    +               F  + E+ F  + 
Sbjct: 923 TWQISLSLSVFGIAAAFISGILGYVVAYFAQGMF----LGILNNFWFIPIGEHTFSAIG 977


>gi|257065407|ref|YP_003145079.1| ABC-type antimicrobial peptide transport system, ATPase component
           [Slackia heliotrinireducens DSM 20476]
 gi|256793060|gb|ACV23730.1| ABC-type antimicrobial peptide transport system, ATPase component
           [Slackia heliotrinireducens DSM 20476]
          Length = 888

 Score = 36.5 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 31  QILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPF-CFAMETTNVLTSMNRNTELLII 89
           Q++   ++V +   S+  ++    Y++   + +        +     ++ + R  E+ I+
Sbjct: 734 QVIHYTDIVGTLMSSVTSIVNSITYILIAFVAISLVVSSIMIGIITYISVLERTKEIGIL 793

Query: 90  DNTGTSRITLIKPV 103
            + G S+  + +  
Sbjct: 794 RSIGASKKDISRVF 807


>gi|290959822|ref|YP_003491004.1| ABC transporter transmembrane protein [Streptomyces scabiei 87.22]
 gi|260649348|emb|CBG72463.1| putative ABC transport system transmembrane subunit [Streptomyces
           scabiei 87.22]
          Length = 859

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 37  NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGT 94
            +  ++ + +   + +  Y +     +       +   N  + +   R  E+ ++   G+
Sbjct: 251 EVADANAKDVGEFMGVMKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGS 309

Query: 95  SRITLIKPVLFLAILLSIFLFIS 117
           SR  + + VL  A+LL +F  + 
Sbjct: 310 SRGQVNRSVLVEALLLGVFGSVL 332


>gi|73669871|ref|YP_305886.1| hypothetical protein Mbar_A2385 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397033|gb|AAZ71306.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 387

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 67  FCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENII 121
               + + ++L  M      R  E+ I+   G S+  ++K  +  +++L I       I+
Sbjct: 266 ISLVVASVSILNIMLMSVTERTKEIGIMKAVGASKKDIMKMFVLESLILGIIASFIGGIL 325

Query: 122 EPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKI 161
                  +  ++      ++  +    +F  +   +   I
Sbjct: 326 ---SLGVVFVITDLILKDVSSLFDR-GVFLYVVGGIVFGI 361


>gi|72162876|ref|YP_290533.1| cell division protein FtsX [Thermobifida fusca YX]
 gi|71916608|gb|AAZ56510.1| cell division protein FtsX [Thermobifida fusca YX]
          Length = 302

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 36  INLVSSSTESLNILLKISGYL----IPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDN 91
           +++VS+  + L+   ++   L    +   +  +      +  T  L++ +R  E  I+  
Sbjct: 157 VDMVSNDKDVLDRFFELFDVLKWAALTFAIVQLAAAALLIGNTIRLSAYSRRRETGIMRL 216

Query: 92  TGTSRITLIKPVLFLAILLSIFLFISENIIEPKCRSTI 129
            G S   +  P L    +  +   I  +      R  +
Sbjct: 217 VGASNFYIQLPFLLEGAICGLIGGIIASGFIVAARYVL 254


>gi|317150012|ref|XP_001823735.2| plasma membrane calcium-transporting ATPase [Aspergillus oryzae
           RIB40]
          Length = 1047

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 1   MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTV 60
           +     YI    G    +    I+FI ++  +       +   +    L  IS  ++   
Sbjct: 321 LNVLAKYI-ANFGGLAALVLFIILFIKFLTSLPHSSLTPTEKGQQFLDLFIISLTVVVIA 379

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNT 92
           +P   P    +      T M ++  L+ + + 
Sbjct: 380 VPEGLPLTVTLALAFATTRMLKDHNLVRMLSA 411


>gi|167755605|ref|ZP_02427732.1| hypothetical protein CLORAM_01119 [Clostridium ramosum DSM 1402]
 gi|167704544|gb|EDS19123.1| hypothetical protein CLORAM_01119 [Clostridium ramosum DSM 1402]
          Length = 303

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++ +     F +  T  +T   R TE+ I+   G S   +  P +   +L+ +   I  
Sbjct: 182 FIVGLAIIALFMIANTIKITITARQTEISIMRMVGASNWYIRIPFMLEGMLIGLIGSIIP 241

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            I+       +   +  A ++   +      F R   D  + I+       L G F+   
Sbjct: 242 IIVLVYGYGMVYDYANGALMSAMLALKPPMPFIR---DFSLVIAAVGAGVGLVGSFVSIR 298

Query: 179 R 179
           R
Sbjct: 299 R 299


>gi|53791398|dbj|BAD53435.1| unknown protein [Oryza sativa Japonica Group]
 gi|53793535|dbj|BAD52984.1| unknown protein [Oryza sativa Japonica Group]
          Length = 334

 Score = 36.5 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 124 KCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           K      +  ++ +  L +  ++          D DL   I K +    +      D+R 
Sbjct: 196 KGFKVFGENVSRIRERLMYDEVKNGYQSRMTHSDADL-FFIDKQSGGEVM------DTRA 248

Query: 181 TQTHKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +  +      A +  +   +    + +G   RK   ++D +++KF  Y ++  S     
Sbjct: 249 GEDEEAVEMETADNAFMAAAQSMKAMANGMRKRKDCGAEDANVVKFVKYKVEDSSVKDYF 308

Query: 238 IVLKANDQNLSFLLNPNPNNPN 259
           +       + S + NP  ++  
Sbjct: 309 LSANNGMSSGSEVENPQSDDEM 330


>gi|304316121|ref|YP_003851266.1| hypothetical protein Tthe_0621 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777623|gb|ADL68182.1| protein of unknown function DUF214 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 295

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRIT 98
           V      +  +++I G  +  +L +++     +  T  L    R  E+ I+   G +   
Sbjct: 158 VVDKLLGIIKIIRIVGLCVILILFIIS--VVIISNTIKLGVFARRREINIMKYIGATDWF 215

Query: 99  LIKPVLFLAILLSIFLFISENIIE 122
           +  P L   I+L +   I   +I 
Sbjct: 216 IRWPFLVEGIVLGLVGSILAIVIL 239


>gi|297597139|ref|NP_001043490.2| Os01g0600300 [Oryza sativa Japonica Group]
 gi|255673428|dbj|BAF05404.2| Os01g0600300 [Oryza sativa Japonica Group]
          Length = 355

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 124 KCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           K      +  ++ +  L +  ++          D DL   I K +    +      D+R 
Sbjct: 217 KGFKVFGENVSRIRERLMYDEVKNGYQSRMTHSDADL-FFIDKQSGGEVM------DTRA 269

Query: 181 TQTHKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +  +      A +  +   +    + +G   RK   ++D +++KF  Y ++  S     
Sbjct: 270 GEDEEAVEMETADNAFMAAAQSMKAMANGMRKRKDCGAEDANVVKFVKYKVEDSSVKDYF 329

Query: 238 IVLKANDQNLSFLLNPNPNNPN 259
           +       + S + NP  ++  
Sbjct: 330 LSANNGMSSGSEVENPQSDDEM 351


>gi|218188592|gb|EEC71019.1| hypothetical protein OsI_02713 [Oryza sativa Indica Group]
          Length = 334

 Score = 36.5 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 124 KCRSTIKQLSAKAQLALTFSYLEEN---LFFRLDDDLYIKISKYNPNNTLQGIFIVDSRD 180
           K      +  ++ +  L +  ++          D DL   I K +    +      D+R 
Sbjct: 196 KGFKVFGENVSRIRERLMYDEVKNGYQSRMTHSDADL-FFIDKLSGGEVM------DTRA 248

Query: 181 TQTHKIY---YAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSST 237
            +  +      A +  +   +    + +G   RK   ++D +++KF  Y ++  S     
Sbjct: 249 GEDEEAVEMETADNAFMAAAQSMKAMANGMRKRKDCGAEDANVVKFVKYKVEDSSVKDYF 308

Query: 238 IVLKANDQNLSFLLNPNPNNPN 259
           +       + S + NP  ++  
Sbjct: 309 LSANNGMSSGSEVENPQSDDEM 330


>gi|331266787|ref|YP_004326417.1| cell wall hydrolase/autolysin [Streptococcus oralis Uo5]
 gi|326683459|emb|CBZ01077.1| cell wall hydrolase/autolysin [Streptococcus oralis Uo5]
          Length = 599

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           Y A SG I  D+   I  +G  +        +S   FK Y      A +    +K  D
Sbjct: 198 YVAPSGKISQDKWEKI--NGSWYYFDKDGGMLSATTFKGYLFNQSGAMAENNWVKIKD 253


>gi|322374689|ref|ZP_08049203.1| surface protein PspA [Streptococcus sp. C300]
 gi|321280189|gb|EFX57228.1| surface protein PspA [Streptococcus sp. C300]
          Length = 599

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           Y A SG I  D+   I  +G  +        +S   FK Y      A +    +K  D
Sbjct: 198 YVAPSGKISQDKWEKI--NGSWYYFDKDGGMLSATTFKGYLFNQSGAMAENNWVKIKD 253


>gi|315612779|ref|ZP_07887690.1| surface protein PspC [Streptococcus sanguinis ATCC 49296]
 gi|315314889|gb|EFU62930.1| surface protein PspC [Streptococcus sanguinis ATCC 49296]
          Length = 599

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 187 YYAQSGSIDLDRQAIILNDGEVHRKSPISKDISIMKFKSYTLQTESANSSTIVLKAND 244
           Y A SG I  D+   I  +G  +        +S   FK Y      A +    +K  D
Sbjct: 198 YVAPSGKISQDKWEKI--NGSWYYFDKDGGMLSATTFKGYLFNQSGAMAENNWVKIKD 253


>gi|296268779|ref|YP_003651411.1| hypothetical protein Tbis_0794 [Thermobispora bispora DSM 43833]
 gi|296091566|gb|ADG87518.1| protein of unknown function DUF214 [Thermobispora bispora DSM
           43833]
          Length = 299

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 44  ESLNILL-KISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKP 102
           +SL   + K+    +   + M+      +  T  L++ NR  E  I+   G S + +  P
Sbjct: 167 QSLFGFMGKLRNMALGVAILMLIAATLLIGNTVRLSAYNRRRETAIMRLVGASNLYIQLP 226

Query: 103 VLFLAILLSIFLFISENIIE 122
            +   ++  +   +   ++ 
Sbjct: 227 FVMEGLIAGLIGGVLAAVLL 246


>gi|327441617|dbj|BAK17982.1| ABC-type antimicrobial peptide transport system, permease component
           [Solibacillus silvestris StLB046]
          Length = 442

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVL 104
           L +   ++   L  V      + +  +  +M      R  E+ ++   G S   + +  L
Sbjct: 293 LNVFFLVLKAGLVFVGTIAVLIASIGIFNTMTMAVTERTREIGVLKAIGASPKLIQRLFL 352

Query: 105 ----FLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIK 160
               F+ ++ ++       ++     + +  +   A     F+ ++   F  +   L + 
Sbjct: 353 MESTFIGVIGTVLAIAISYVVSFAANALLPLILKAATGEDGFNNVQ---FSAIPWQLVVI 409

Query: 161 ISKYN 165
               +
Sbjct: 410 AGAIS 414


>gi|325571385|ref|ZP_08146885.1| cell division protein FtsX [Enterococcus casseliflavus ATCC 12755]
 gi|325155861|gb|EGC68057.1| cell division protein FtsX [Enterococcus casseliflavus ATCC 12755]
          Length = 294

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 42  STESLNILLKISG----YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
             +S + + ++S     + +   + ++    F +  T  +T ++R  E+ I+   G    
Sbjct: 152 GGDSSDRIFELSAAVRTWGLAAAVLLIFVAMFLISNTIRITILSRQREIQIMRLVGAKNG 211

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
            +  P       + +   I    +       +  +   + L   +S +  N+F      +
Sbjct: 212 YIRWPFFLEGGWIGLLGSIVPIALMYFGYHQVYAMVNPSLLRSNYSLIAPNMFLIQVCGV 271

Query: 158 YIKIS 162
              I 
Sbjct: 272 MALIG 276


>gi|257867490|ref|ZP_05647143.1| cell division protein [Enterococcus casseliflavus EC30]
 gi|257873819|ref|ZP_05653472.1| cell division protein [Enterococcus casseliflavus EC10]
 gi|257877569|ref|ZP_05657222.1| cell division protein [Enterococcus casseliflavus EC20]
 gi|257801546|gb|EEV30476.1| cell division protein [Enterococcus casseliflavus EC30]
 gi|257807983|gb|EEV36805.1| cell division protein [Enterococcus casseliflavus EC10]
 gi|257811735|gb|EEV40555.1| cell division protein [Enterococcus casseliflavus EC20]
          Length = 309

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 42  STESLNILLKISG----YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
             +S + + ++S     + +   + ++    F +  T  +T ++R  E+ I+   G    
Sbjct: 167 GGDSSDRIFELSAAVRTWGLAAAVLLIFVAMFLISNTIRITILSRQREIQIMRLVGAKNG 226

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
            +  P       + +   I    +       +  +   + L   +S +  N+F      +
Sbjct: 227 YIRWPFFLEGGWIGLLGSIVPIALMYFGYHQVYAMVNPSLLRSNYSLIAPNMFLLQVCGV 286

Query: 158 YIKIS 162
              I 
Sbjct: 287 MALIG 291


>gi|162449381|ref|YP_001611748.1| lipoprotein releasing system transmembrane protein lolC [Sorangium
           cellulosum 'So ce 56']
 gi|161159963|emb|CAN91268.1| Lipoprotein releasing system transmembrane protein lolC [Sorangium
           cellulosum 'So ce 56']
          Length = 409

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 27/61 (44%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
             +V      + +  +++ + ++ E+ ++   GTSR  +++  L    +L +      + 
Sbjct: 285 FFVVLAVALGIASVLIVSVVQKSREIGVLRAVGTSRGRVLRIFLIQGAVLGLLGSFVGSA 344

Query: 121 I 121
           +
Sbjct: 345 L 345


>gi|134076937|emb|CAK45346.1| unnamed protein product [Aspergillus niger]
          Length = 1433

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS---STESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L ++  +       ++   +  ++  +I   +P  
Sbjct: 512 VLAEYIAKLGLASGLLLFVVLFIKFLAQLKDMGGASEKGQAFLQIFIVAVTVIVVAVPEG 571

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M ++  L+
Sbjct: 572 LPLAVTLALAFATTRMLKDNNLV 594


>gi|254585749|ref|XP_002498442.1| ZYRO0G10362p [Zygosaccharomyces rouxii]
 gi|238941336|emb|CAR29509.1| ZYRO0G10362p [Zygosaccharomyces rouxii]
          Length = 1130

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQIL-------QRINL-VSSSTESLNILLKISGYLIPTV 60
           L      F  +   I+F+   IQ L       +  +L  +        +L  S  +I   
Sbjct: 303 LSDSISVFGCASAIILFLVLFIQFLFDIREGGRLADLPAAKRGSQFMSILITSITVIVVA 362

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELL-IIDNT 92
           +P   P    +      T M ++  L+ ++   
Sbjct: 363 VPEGLPLAVTLSLAFATTRMTKDGNLVRVLSAC 395


>gi|237734353|ref|ZP_04564834.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382583|gb|EEO32674.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 296

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 59  TVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
            ++ +     F +  T  +T   R TE+ I+   G S   +  P +   +L+ +   I  
Sbjct: 175 FIVGLAIIALFMIANTIKITITARQTEISIMRMVGASNWYIRIPFMLEGMLIGLIGSIIP 234

Query: 119 NIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKISKYNPNNTLQGIFIVDS 178
            I+       +   +  A ++   +      F R   D  + I+       L G F+   
Sbjct: 235 IIVLVYGYGMVYDYANGALMSAMLALKPPMPFIR---DFSLVIAAVGAGVGLVGSFVSIR 291

Query: 179 R 179
           R
Sbjct: 292 R 292


>gi|297200205|ref|ZP_06917602.1| ABC transporter integral membrane protein [Streptomyces sviceus
           ATCC 29083]
 gi|197713342|gb|EDY57376.1| ABC transporter integral membrane protein [Streptomyces sviceus
           ATCC 29083]
          Length = 842

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 61  LPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLF 115
           L +       + T  +  +       R  EL ++   G SR  + + VL  A ++ +   
Sbjct: 267 LLVFAGIALFVGTFIIANTFTMLVAQRTKELALLRAVGASRRQVTRSVLVEAFVVGLIAA 326

Query: 116 ISENI 120
           ++  +
Sbjct: 327 VTGLV 331


>gi|322376935|ref|ZP_08051428.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. M334]
 gi|321282742|gb|EFX59749.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           sp. M334]
          Length = 329

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 197 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 254

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +      +++       + Q   K+ +    S +   +F  L   L   I 
Sbjct: 255 EGAFIGLLGATLPSVLVFVVYQMVYQSVNKSLVGQNLSMISPEVFSPLMIALLFMIG 311


>gi|317030897|ref|XP_001392426.2| P-type calcium ATPase [Aspergillus niger CBS 513.88]
          Length = 1421

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSS---STESLNILLKISGYLIPTVLPMV 64
           +L        ++   ++F+   I+ L ++  +       ++   +  ++  +I   +P  
Sbjct: 500 VLAEYIAKLGLASGLLLFVVLFIKFLAQLKDMGGASEKGQAFLQIFIVAVTVIVVAVPEG 559

Query: 65  TPFCFAMETTNVLTSMNRNTELL 87
            P    +      T M ++  L+
Sbjct: 560 LPLAVTLALAFATTRMLKDNNLV 582


>gi|290975119|ref|XP_002670291.1| predicted protein [Naegleria gruberi]
 gi|284083848|gb|EFC37547.1| predicted protein [Naegleria gruberi]
          Length = 375

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 1  MKSFELYILRCIGRSFLMSCLFIVFIAWVIQILQRI---NLVSSSTESLNILLKISGYLI 57
          M     Y       SF ++ L + FI W    L        V     +L    K+ G +I
Sbjct: 1  MAIVNRYGFFKAL-SFGVAFLSVTFIVWGTVSLGLWYGGYNVVDGLTTLGDYFKVCGLMI 59

Query: 58 PTVLPMVTPFCFA 70
           TV+ ++  F   
Sbjct: 60 MTVMSLIQTFAIF 72


>gi|258651045|ref|YP_003200201.1| hypothetical protein Namu_0800 [Nakamurella multipartita DSM 44233]
 gi|258554270|gb|ACV77212.1| protein of unknown function DUF214 [Nakamurella multipartita DSM
           44233]
          Length = 848

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVL 104
           L+     I T L +       + T  +L + +     R  EL ++   G SR  + + VL
Sbjct: 267 LEQGLSFITTFLLVFAAVALVVGTFLILNTFSIIVAQRTRELALLRALGASRRQVTRSVL 326

Query: 105 FLAILLSIFLFISENII 121
             A+++ +        +
Sbjct: 327 IEALVVGLVGSTIGLAL 343


>gi|269955836|ref|YP_003325625.1| cell division protein FtsX [Xylanimonas cellulosilytica DSM 15894]
 gi|269304517|gb|ACZ30067.1| cell division protein FtsX [Xylanimonas cellulosilytica DSM 15894]
          Length = 304

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 51  KISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILL 110
           ++S       + M+      + TT  L++++R  E  I+   G S + +  P L    + 
Sbjct: 177 RLSMLAAGLAVVMLLTAALLITTTIRLSAVSRRRETGIMRLVGASNLFIQLPFLLEGAIA 236

Query: 111 SIFLFISE 118
           ++   +  
Sbjct: 237 AVVGSLLA 244


>gi|225055349|gb|ACN80636.1| Sio5 [Streptomyces sioyaensis]
          Length = 866

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 56  LIPTVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVLFLAILL 110
            +  +L         +    +  +       R+ E+ ++   G SR  +++ VL  A L+
Sbjct: 276 FLTKLLLAFAGIALFVGVFIIANTFTMLVAQRSREIALMRAVGASRRQVVRSVLIEAALV 335

Query: 111 SIFL 114
            +  
Sbjct: 336 GLGA 339


>gi|255953167|ref|XP_002567336.1| Pc21g02720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589047|emb|CAP95169.1| Pc21g02720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1054

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 29/79 (36%)

Query: 9   LRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFC 68
           +   G    +    I+FI + + +       S   +S   +  ++  ++   +P   P  
Sbjct: 353 IARFGALAALVLFVILFIEFCVGLRNSTQSASEKGQSFLNVFILALTVVVIAVPEGLPLA 412

Query: 69  FAMETTNVLTSMNRNTELL 87
             +  +   T M R+  L+
Sbjct: 413 VTLALSFATTRMMRDNNLV 431


>gi|293365067|ref|ZP_06611784.1| cell division protein FtsX [Streptococcus oralis ATCC 35037]
 gi|291316517|gb|EFE56953.1| cell division protein FtsX [Streptococcus oralis ATCC 35037]
          Length = 311

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 179 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 236

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
               + +      +++     + + Q   K+ +    S +  ++F  L
Sbjct: 237 EGAFIGLLGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPL 284


>gi|328882976|emb|CCA56215.1| putative ABC transporter integral membrane protein [Streptomyces
           venezuelae ATCC 10712]
          Length = 857

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            L +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + VL  
Sbjct: 262 FLDVMKYAMLGFAGIAFLVGIFL-IVNTFSMLVAQRTREIGLMRAIGSSRKQVNRSVLIE 320

Query: 107 AILLSIFLFI 116
           A+LL  F  +
Sbjct: 321 ALLLGFFGSV 330


>gi|167761004|ref|ZP_02433131.1| hypothetical protein CLOSCI_03402 [Clostridium scindens ATCC 35704]
 gi|167661383|gb|EDS05513.1| hypothetical protein CLOSCI_03402 [Clostridium scindens ATCC 35704]
          Length = 479

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 60  VLPMVTPFCFAMETTNVLTSM-NRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISE 118
           +L +V+   + +     L  M NR  E+ I+   G S+  +    L  A+L+    F+  
Sbjct: 328 LLLLVSSASYIILVLIFLFWMKNRTQEIGILMALGESKKRIWMQFLVEALLVGCIGFVLS 387

Query: 119 NIIEPKCRSTIKQLSAK 135
               P          A+
Sbjct: 388 MGASPLLSKATASYLAR 404


>gi|307702224|ref|ZP_07639184.1| putative cell-division protein [Streptococcus oralis ATCC 35037]
 gi|307624237|gb|EFO03214.1| putative cell-division protein [Streptococcus oralis ATCC 35037]
          Length = 287

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 2/108 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 155 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNGYIRGPFLL 212

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
               + +      +++     + + Q   K+ +    S +  ++F  L
Sbjct: 213 EGAFIGLLGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPL 260


>gi|302560240|ref|ZP_07312582.1| ABC lipoprotein transporter, permease component [Streptomyces
           griseoflavus Tu4000]
 gi|302477858|gb|EFL40951.1| ABC lipoprotein transporter, permease component [Streptomyces
           griseoflavus Tu4000]
          Length = 856

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 49  LLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFL 106
            + +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + VL  
Sbjct: 260 FMNVMKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGSSRKQVNRSVLVE 318

Query: 107 AILLSIFLFIS 117
           A+LL I   + 
Sbjct: 319 ALLLGIIGSVL 329


>gi|212634683|ref|YP_002311208.1| hypothetical protein swp_1859 [Shewanella piezotolerans WP3]
 gi|212556167|gb|ACJ28621.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 289

 Score = 36.5 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 245 QNLSFLLNPNPNNPNYRPELLETYRSEFHKRLTQWLFPVIFGL----ISIVAADKRALVR 300
           + L  +L+P  ++   + E  E +  EFH R    L P             AA  R    
Sbjct: 168 RYLQGMLDPTADHDALQQEFTEVHAREFHLRFRVALAPFYCLAKEDEAGFEAAMLRGSNM 227

Query: 301 QRKKIHPI 308
            R  +  +
Sbjct: 228 HRAYVRKL 235


>gi|331266733|ref|YP_004326363.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           oralis Uo5]
 gi|326683405|emb|CBZ01023.1| cell division ABC transporter, permease protein FtsX [Streptococcus
           oralis Uo5]
          Length = 308

 Score = 36.1 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 2/108 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G +I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 176 LASFIRVWGLVIAGLLIFIAVF--LISNTIRITIISRSREIQIMRLVGARNGYIRGPFLL 233

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRL 153
               + +F     +++     + + Q   K+ +    S +  ++F  L
Sbjct: 234 EGAFIGLFGAAIPSVLVFFVYNMVYQSVNKSLVGQNLSMITPDVFIPL 281


>gi|160894881|ref|ZP_02075655.1| hypothetical protein CLOL250_02431 [Clostridium sp. L2-50]
 gi|156863312|gb|EDO56743.1| hypothetical protein CLOL250_02431 [Clostridium sp. L2-50]
          Length = 302

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 45  SLNILLKISGYLIPTVLPMVTPFCFA-METTNVLTSMNRNTELLIIDNTGTSRITLIKPV 103
           S++ L  + GY    ++ ++       +  T  +    R  E+ I+   G +   +  P 
Sbjct: 164 SISTLSSLVGYASIGIVVILMLVSIFLISNTITIGITVRKEEIAIMKLIGATNFFVRAPF 223

Query: 104 LFLAILLSIFLFISENIIEPKCRSTIKQLSA---KAQLALTFSYLEENLFFRLDD 155
           +   I++     +    +       I +  A       ++     +E LF  +  
Sbjct: 224 IIEGIIIGAVGSVIPLYLLYVMYQKILEYVAGRFAVITSVFAFVSKEELFKTMIP 278


>gi|194397096|ref|YP_002037403.1| Cell division protein FtsX [Streptococcus pneumoniae G54]
 gi|194356763|gb|ACF55211.1| Cell division protein FtsX [Streptococcus pneumoniae G54]
          Length = 308

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLF 105
           L   +++ G  I  +L  +  F   +  T  +T ++R+ E+ I+   G     +  P L 
Sbjct: 176 LASFIRVWGLGIAALLIFIAVF--LISNTIRITIISRSREIQIMRLVGAKNSYIRGPFLL 233

Query: 106 LAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
               + +   I+ +++       + Q   K+ +    S +  +LF  L   L   I 
Sbjct: 234 EGAFIGLLGAIAPSVLVFIVYQIVYQSVNKSLVGQNLSMISPDLFSPLMIALXFVIG 290


>gi|311113860|ref|YP_003985082.1| ABC transporter permease [Rothia dentocariosa ATCC 17931]
 gi|310945354|gb|ADP41648.1| ABC superfamily ATP binding cassette transporter permease protein
           [Rothia dentocariosa ATCC 17931]
          Length = 938

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 39  VSSSTESLNILLKISGYLIPTVLPMVTPFCFA-METTNVLTSMNRNTELLIIDNTGTSRI 97
           +     ++ I L +  Y I  ++ ++       +  T VL++  R+ E  ++   G SR 
Sbjct: 793 ILEMRAAVEISLIVIMYTILAIIALMVLISVLGVSNTLVLSAHERSRENALLRTLGLSRQ 852

Query: 98  TLIKPVLFLAILLSIFLFISENI 120
            L   ++  AIL+++   +   I
Sbjct: 853 QLRSVIMIEAILITLSALLVALI 875


>gi|186682491|ref|YP_001865687.1| glycolipid ABC exporter inner membrane subunit [Nostoc punctiforme
           PCC 73102]
 gi|186464943|gb|ACC80744.1| ABC exporter, inner membrane subunit, DevC family [Nostoc
           punctiforme PCC 73102]
          Length = 386

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 51  KISGYLIPTVLPMVTPFCFAMETTNVLTSMNRN-----TELLIIDNTGTSRITLIKPVLF 105
            ++   I  +        F + T  V   +  +     +E   +   G S   L K VL 
Sbjct: 257 WLTSTSIGIIFGTGAIMAFIVGTVIVYQVLYSDITEHLSEYATLKAIGYSNFRLSKVVLQ 316

Query: 106 LAILLSIFLFISENII 121
            A++L+   FI    I
Sbjct: 317 EAVILAFLGFIPGFFI 332


>gi|269126534|ref|YP_003299904.1| hypothetical protein Tcur_2300 [Thermomonospora curvata DSM 43183]
 gi|268311492|gb|ACY97866.1| protein of unknown function DUF214 [Thermomonospora curvata DSM
           43183]
          Length = 834

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 59  TVLPMVTPFCFAMETTNVLTSMN-----RNTELLIIDNTGTSRITLIKPVLFLAILLSIF 113
           T L +       +    +  + +     R  EL ++   G SR  + + V+  A+ + + 
Sbjct: 261 TFLLVFALISIFVGAFIIFNTFSMLVAQRTRELALLRAIGASRRQITRAVIGEAVAVGVV 320


>gi|294658111|ref|XP_460432.2| DEHA2F01584p [Debaryomyces hansenii CBS767]
 gi|202952881|emb|CAG88739.2| DEHA2F01584p [Debaryomyces hansenii]
          Length = 563

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 25/127 (19%)

Query: 151 FRLDDDLYIKISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQAIILNDGEVHR 210
            +    L I     N N  L   F+ D+ + +      A++  +       I+N G + R
Sbjct: 258 SKRRPGLIIH----NENGELDDDFLYDNSNPEDETNIRAENNRVYSPP---IINGGVILR 310

Query: 211 KS------------------PISKDISIMKFKSYTLQTESANSSTIVLKANDQNLSFLLN 252
           K                     ++   +    S  +++ +  +     +   + LS L +
Sbjct: 311 KELKEKQKLSKEEARSWDVFDEARKCKVDSESSNAVKSIAQKTEEPRARRRRKKLSDLPH 370

Query: 253 PNPNNPN 259
           PNPN   
Sbjct: 371 PNPNPEL 377


>gi|330447180|ref|ZP_08310830.1| permease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491371|dbj|GAA05327.1| permease family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 310

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 53  SGYLIPTVLPMVTPFCFAMETTNVL--TSMNRNTELLIIDNTGTSRITLIKPVLFLAILL 110
               +  ++  +  F   +   N L    ++   E+ ++   G +   +++P L++ +  
Sbjct: 178 LAITLAMLMSGLMLFAVFLIVGNTLRLQVLSHKDEIQVMKMVGATDSYILRPYLYVGVWY 237

Query: 111 SIFLFISENIIEPKCRSTIKQLSAKAQLALTFSY 144
            +   +   I+       + +  AK       ++
Sbjct: 238 GLIAAVIAWILTAVVTLLLDEAVAKLANLYGSNF 271


>gi|116178982|ref|XP_001219340.1| hypothetical protein CHGG_00119 [Chaetomium globosum CBS 148.51]
 gi|88184416|gb|EAQ91884.1| hypothetical protein CHGG_00119 [Chaetomium globosum CBS 148.51]
          Length = 1236

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRI----NLVSSSTESLNILLKISGYLIPTVLPM 63
           +L      F      ++F+   I+ L ++    +      ++   L   S  ++   +P 
Sbjct: 398 VLADWIAKFGGGAALLLFVVLFIKFLAQLPNNTDTPDQKGQTFLRLFITSVTVVVVAVPE 457

Query: 64  VTPFCFAMETTNVLTSMNRNTELL-IIDNT 92
             P    +      T M ++  L+ ++   
Sbjct: 458 GLPLAVTLALAFATTRMLKDNNLVRVLKAC 487


>gi|257870247|ref|ZP_05649900.1| cell division protein [Enterococcus gallinarum EG2]
 gi|257804411|gb|EEV33233.1| cell division protein [Enterococcus gallinarum EG2]
          Length = 294

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 4/125 (3%)

Query: 42  STESLNILLKISG----YLIPTVLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRI 97
             +S + +  +S     + +   + ++    F +  T  +T ++R  E+ I+   G    
Sbjct: 152 GGDSSDKIFALSAAVRTWGLGAAILLIFVAMFLISNTIRITILSRQREIQIMRLVGAKNG 211

Query: 98  TLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDL 157
            +  P       + +   I    I       +  L   A L   +S +  N F      +
Sbjct: 212 YIRWPFFLEGGWIGLLGSIVPIAIMYFGYHQVYLLVNPALLRSNYSLIAPNQFLLQVCGV 271

Query: 158 YIKIS 162
              I 
Sbjct: 272 MALIG 276


>gi|239981783|ref|ZP_04704307.1| putative ABC transporter permease protein [Streptomyces albus
           J1074]
 gi|291453644|ref|ZP_06593034.1| ABC transporter integral membrane protein [Streptomyces albus
           J1074]
 gi|291356593|gb|EFE83495.1| ABC transporter integral membrane protein [Streptomyces albus
           J1074]
          Length = 841

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 59  TVLPMVTPFCFAMETTNVLTSM-----NRNTELLIIDNTGTSRITLIKPVL----FLAIL 109
           T+L         +    +  +       R  EL ++   G SR  + + VL     + ++
Sbjct: 262 TMLLAFAGIALFVGVFLIANTFTMLIAQRTRELALMRAVGASRRQVKRSVLAEAALVGLV 321

Query: 110 LSIFLFISENIIEPKCRSTIKQLSAK 135
            S   F     +    RS +    A+
Sbjct: 322 ASAVGFGLGLGLAVALRSAMDAFGAE 347


>gi|227543280|ref|ZP_03973329.1| ABC superfamily ATP binding cassette transporter permease protein
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227180893|gb|EEI61865.1| ABC superfamily ATP binding cassette transporter permease protein
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 848

 Score = 36.1 bits (82), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFLA 107
           L    Y +     +       +  TN  + +   R  E  ++   GTSR  + + V+  A
Sbjct: 250 LSFVNYFLWAFAGIALVVGTFI-ITNTFSMIVAQRTREFALLRALGTSRRQITRSVIVEA 308

Query: 108 ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           I++ +       +I            A  +     + L    F 
Sbjct: 309 IIVGLIGSALG-VIAGWGLVQALMAIAAGRG----AVLSPGTFM 347


>gi|297741520|emb|CBI32652.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 23/124 (18%)

Query: 3   SFELYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLP 62
               Y+   +   ++      VF+ W          +S    +L   L +S         
Sbjct: 777 ILFRYL---VIGLYVGIATVGVFVIWYTHSSFLGIDLSGDGHTLATTLSLSVL------- 826

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIE 122
                  A+E  N L +++ +  LL++          + P L +A+ +S  L      + 
Sbjct: 827 ------VAIEMFNSLNALSEDGSLLVM-----PPW--VNPWLLVAMSVSFGLHFLILYVP 873

Query: 123 PKCR 126
              +
Sbjct: 874 VLAQ 877


>gi|16804544|ref|NP_466029.1| hypothetical protein lmo2506 [Listeria monocytogenes EGD-e]
 gi|224503254|ref|ZP_03671561.1| hypothetical protein LmonFR_12188 [Listeria monocytogenes FSL
           R2-561]
 gi|254828081|ref|ZP_05232768.1| ftsX [Listeria monocytogenes FSL N3-165]
 gi|254831071|ref|ZP_05235726.1| hypothetical protein Lmon1_06913 [Listeria monocytogenes 10403S]
 gi|255025540|ref|ZP_05297526.1| hypothetical protein LmonocytFSL_02933 [Listeria monocytogenes FSL
           J2-003]
 gi|255028769|ref|ZP_05300720.1| hypothetical protein LmonL_05501 [Listeria monocytogenes LO28]
 gi|284802944|ref|YP_003414809.1| hypothetical protein LM5578_2701 [Listeria monocytogenes 08-5578]
 gi|284996085|ref|YP_003417853.1| hypothetical protein LM5923_2650 [Listeria monocytogenes 08-5923]
 gi|16411994|emb|CAD00584.1| ftsX [Listeria monocytogenes EGD-e]
 gi|258600465|gb|EEW13790.1| ftsX [Listeria monocytogenes FSL N3-165]
 gi|284058506|gb|ADB69447.1| hypothetical protein LM5578_2701 [Listeria monocytogenes 08-5578]
 gi|284061552|gb|ADB72491.1| hypothetical protein LM5923_2650 [Listeria monocytogenes 08-5923]
          Length = 294

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%)

Query: 61  LPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENI 120
           + ++    F +  T  +   +R  E+ I+   G +   +  P +     L +   I   +
Sbjct: 175 IGLLLTAMFLISNTIKIAIFSRRREIEIMKLVGATNWFIRWPFVLEGAWLGLIGSILPVV 234

Query: 121 IEPKCRSTIKQLSAKAQLALTFSYLEENLFFRLDDDLYIKIS 162
           +       I  L     +  + S L    F      L I I 
Sbjct: 235 LTFIGYVNIYNLVNPKLVTSSLSLLPPTPFAYQISGLIIAIG 276


>gi|83594081|ref|YP_427833.1| hypothetical protein Rru_A2749 [Rhodospirillum rubrum ATCC 11170]
 gi|83576995|gb|ABC23546.1| Protein of unknown function DUF214 [Rhodospirillum rubrum ATCC
           11170]
          Length = 409

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 11  CIGRSFLMSCLFIVFIAWVIQILQRINLVSSSTESLNILLKISGYLIPTVLPMVTPFCFA 70
            +  S L +   +   +W+ +  +    ++S  ++  ++         +++ +V     A
Sbjct: 247 EVVASHLGAATGLTATSWIAKNRRLYQALASQAQTGRLIQGF------SLITIVIGVSSA 300

Query: 71  METTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFIS 117
           +    +L++  R +E+ I+ + G S+  +    L   + + +   + 
Sbjct: 301 L----LLSTYRRRSEIGIMRSFGVSKRFVALVFLAQGLFVGLIGALL 343


>gi|239930799|ref|ZP_04687752.1| ABC transport system integral membrane protein [Streptomyces
           ghanaensis ATCC 14672]
 gi|291439164|ref|ZP_06578554.1| ABC transport system integral membrane protein [Streptomyces
           ghanaensis ATCC 14672]
 gi|291342059|gb|EFE69015.1| ABC transport system integral membrane protein [Streptomyces
           ghanaensis ATCC 14672]
          Length = 859

 Score = 36.1 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 46  LNILLKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPV 103
           +   + +  Y +     +       +   N  + +   R  E+ ++   G+SR  + + V
Sbjct: 260 VESFMSVMKYAMLGFAGIAFLVGIFL-IINTFSMLVAQRTREIGLMRAIGSSRGQVNRSV 318

Query: 104 LFLAILLSIFLFIS 117
           L  A+LL +   + 
Sbjct: 319 LIEALLLGVVGSVL 332


>gi|326201718|ref|ZP_08191589.1| protein of unknown function DUF214 [Clostridium papyrosolvens DSM
           2782]
 gi|325988318|gb|EGD49143.1| protein of unknown function DUF214 [Clostridium papyrosolvens DSM
           2782]
          Length = 482

 Score = 36.1 bits (82), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 9/106 (8%)

Query: 24  VFIAWVIQILQRINLVSSST------ESLNILLKISGYLIPTVLPMVTPFCFAMETTNVL 77
             +  +    +R +L+  +        + N L KIS  LI           F +    V 
Sbjct: 293 TAVEKINMDWERYDLIDRNGNMSTVSSNFNDLAKISTLLIVITFVAGLVILFLIFVFWVK 352

Query: 78  TSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISENIIEP 123
                N E+ ++   G  ++ ++  +   A++++   F       P
Sbjct: 353 NR---NHEIGVLLALGCKKVNILGQLFVEALIITFLSFAISFACAP 395


>gi|320095991|ref|ZP_08027604.1| cell division protein FtsX [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977062|gb|EFW08792.1| cell division protein FtsX [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 304

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 63  MVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           MV      + TT  L++M+R  E  I+   G S + +  P +    L ++       
Sbjct: 189 MVVAAVLLISTTIRLSAMSREQETQIMRYVGASNLFIQAPFMIEGALAALVGAGLAI 245


>gi|171679271|ref|XP_001904582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939261|emb|CAP64489.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1177

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 16  FLMSCLFIVFIAWVIQILQRI----NLVSSSTESLNILLKISGYLIPTVLPMVTPFCFAM 71
           F      ++F+   I+ L  +    +      ++   L   +  ++   +P   P    +
Sbjct: 366 FGGGAALLLFVVLFIKFLASLPGSQDTPDQKGQTFLRLFITAVTVVVVAVPEGLPLAVTL 425

Query: 72  ETTNVLTSMNRNTELL-IIDNT 92
                 T M R+  L+ ++   
Sbjct: 426 ALAFATTRMMRDNNLVRVLKAC 447


>gi|116619158|ref|YP_821314.1| hypothetical protein Acid_0013 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222320|gb|ABJ81029.1| protein of unknown function DUF214 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 809

 Score = 36.1 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTS-MNRNTELLIIDNTGTSRITLIKPVLFLAI 108
            K +   +   + ++     A     +L     R+ E+ I    G SR  +++ +L  ++
Sbjct: 264 FKKTLLTLSAAVALLLFIACANVANMLLARSTARDREMAIRSALGASRWRVVRQLLVESV 323

Query: 109 LLSIFLFISENIIEPKCRSTIKQLSAK 135
           LL I   +    +       +  L  +
Sbjct: 324 LLGIGGAVLGCALAYGGIKALVALIPE 350


>gi|332244047|ref|XP_003271182.1| PREDICTED: myosin-VI [Nomascus leucogenys]
          Length = 1285

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 161  ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISK 216
              +    +  Q +   + RD +           +  D      A+  NDG   + +P   
Sbjct: 990  ARQREEESQQQAVLEQERRDRELALRIAQSEAELISDEAQADLALRRNDGTRPKMTPEQM 1049

Query: 217  DISIMKFKS--YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
               + +F S    +Q   A + T     +    + L   +  N +   ELL   R EFH+
Sbjct: 1050 AKEMSEFLSRGPAVQATKAAAGTKKYDLSKWKYAEL--RDTINTSCDIELLAACREEFHR 1107

Query: 275  RL 276
            RL
Sbjct: 1108 RL 1109


>gi|114608173|ref|XP_001145254.1| PREDICTED: myosin VI [Pan troglodytes]
 gi|114608175|ref|XP_001144940.1| PREDICTED: myosin-VI [Pan troglodytes]
          Length = 1285

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 161  ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISK 216
              +    +  Q +   + RD +           +  D      A+  NDG   + +P   
Sbjct: 990  ARQREEESQQQAVLEQERRDRELALRIAQSEAELISDEAQADLALRRNDGTRPKMTPEQM 1049

Query: 217  DISIMKFKS--YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
               + +F S    +Q   A + T     +    + L   +  N +   ELL   R EFH+
Sbjct: 1050 AKEMSEFLSRGPAVQATKAAAGTKKYDLSKWKYAEL--RDTINTSCDIELLAACREEFHR 1107

Query: 275  RL 276
            RL
Sbjct: 1108 RL 1109


>gi|114608177|ref|XP_001145412.1| PREDICTED: myosin VI [Pan troglodytes]
          Length = 1276

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 161  ISKYNPNNTLQGIFIVDSRDTQTHKIYYAQSGSIDLDRQ----AIILNDGEVHRKSPISK 216
              +    +  Q +   + RD +           +  D      A+  NDG   + +P   
Sbjct: 990  ARQREEESQQQAVLEQERRDRELALRIAQSEAELISDEAQADLALRRNDGTRPKMTPEQM 1049

Query: 217  DISIMKFKS--YTLQTESANSSTIVLKANDQNLSFLLNPNPNNPNYRPELLETYRSEFHK 274
               + +F S    +Q   A + T     +    + L   +  N +   ELL   R EFH+
Sbjct: 1050 AKEMSEFLSRGPAVQATKAAAGTKKYDLSKWKYAEL--RDTINTSCDIELLAACREEFHR 1107

Query: 275  RL 276
            RL
Sbjct: 1108 RL 1109


>gi|302413345|ref|XP_003004505.1| calcium-transporting ATPase [Verticillium albo-atrum VaMs.102]
 gi|261357081|gb|EEY19509.1| calcium-transporting ATPase [Verticillium albo-atrum VaMs.102]
          Length = 1307

 Score = 36.1 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 8   ILRCIGRSFLMSCLFIVFIAWVIQILQRI----NLVSSSTESLNILLKISGYLIPTVLPM 63
           IL         +   I+     IQ L R+    +      ++   +L  S  ++   +P 
Sbjct: 486 ILAGYIAKLGSAAGLILLGVLTIQFLARLPGNDDSPDEKGQTFLQILITSITIVVVAVPE 545

Query: 64  VTPFCFAMETTNVLTSMNRNTELL 87
             P    +        M +   L+
Sbjct: 546 GLPLAVTLSLAYATKRMTKENNLV 569


>gi|323342410|ref|ZP_08082642.1| cell division protein FtsX [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463522|gb|EFY08716.1| cell division protein FtsX [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 301

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 28/72 (38%)

Query: 60  VLPMVTPFCFAMETTNVLTSMNRNTELLIIDNTGTSRITLIKPVLFLAILLSIFLFISEN 119
           V+ +     F +  T  ++  +R  E+ I+   G +   +  P +   +++ +   I   
Sbjct: 179 VVTLAVIAVFLISNTIRVSIHSRRREISIMRTVGATNWYIRWPFIIEGMVIGLLGAIIPI 238

Query: 120 IIEPKCRSTIKQ 131
           +I       + Q
Sbjct: 239 VISIFGYQYLYQ 250


>gi|186475542|ref|YP_001857012.1| Ste24 endopeptidase [Burkholderia phymatum STM815]
 gi|184192001|gb|ACC69966.1| Ste24 endopeptidase [Burkholderia phymatum STM815]
          Length = 419

 Score = 36.1 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 6   LYILRCIGRSFLMSCLFIVFIAWVIQILQRINLVSSS----TESLNILLKISGYLIPTVL 61
            ++++ +  +FL+S   +  + W+ Q       +         +  + L +    +P  L
Sbjct: 287 RHVIKRMIVTFLISLAMLALLGWLTQRTWFFEGLGVRPSMTGSNDGLALVLFFLAVPVFL 346

Query: 62  PMVTPFCFAME 72
             VTP      
Sbjct: 347 FFVTPLGSLAS 357


>gi|254411820|ref|ZP_05025596.1| hypothetical protein MC7420_4786 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181542|gb|EDX76530.1| hypothetical protein MC7420_4786 [Microcoleus chthonoplastes PCC
           7420]
          Length = 817

 Score = 36.1 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 86  LLIIDNTGTSR---ITLIKPVLFLAILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTF 142
           + I+  +G S      L     +L ++ S+        I    +S   Q  A+ +    F
Sbjct: 362 IYIVLASGCSLIGTYLLFLAGWWLPVIPSLLALTGSAFITADYQSRRLQQEAQQKYRRIF 421

Query: 143 SYLEENLFFRLDDDLY---------IKISKYNPNNTLQGI------FIVDSRDTQTHKIY 187
               E +F    D  Y         I     +P   +  I        VD +        
Sbjct: 422 ENALEGIFQTTLDGRYRSANPALAKIY-GYKSPEELITSITNIKTQLYVDPKRRDYFIQL 480

Query: 188 YAQSGSIDLDRQAIILNDGEV-----HRKSPISKDISIMKFKSYTLQTESANSSTIVLKA 242
             Q G +      +   +G +     H +S      +++ ++ +         + +  +A
Sbjct: 481 MEQQGEVVGFESQVYRRNGSIIWICEHARSVCDDQGNVLYYQGFIEDISERKQAQVEREA 540

Query: 243 NDQNLSFL 250
             + L  L
Sbjct: 541 FTRELFQL 548


>gi|227489027|ref|ZP_03919343.1| ABC superfamily ATP binding cassette transporter permease protein
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227090972|gb|EEI26284.1| ABC superfamily ATP binding cassette transporter permease protein
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 850

 Score = 35.7 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 50  LKISGYLIPTVLPMVTPFCFAMETTNVLTSM--NRNTELLIIDNTGTSRITLIKPVLFLA 107
           L    Y +     +       +  TN  + +   R  E  ++   GTSR  + + V+  A
Sbjct: 252 LSFVNYFLWAFAGIALVVGTFI-ITNTFSMIVAQRTREFALLRALGTSRRQITRSVIVEA 310

Query: 108 ILLSIFLFISENIIEPKCRSTIKQLSAKAQLALTFSYLEENLFF 151
           I++ +       +I            A  +     + L    F 
Sbjct: 311 IIVGLIGSALG-VIAGWGLVQALMAIAAGRG----AVLSPGTFM 349


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.144    0.373 

Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,178,027,495
Number of Sequences: 14124377
Number of extensions: 235800084
Number of successful extensions: 1444259
Number of sequences better than 10.0: 5006
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 2632
Number of HSP's that attempted gapping in prelim test: 1433856
Number of HSP's gapped (non-prelim): 7875
length of query: 361
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 221
effective length of database: 2,865,380,850
effective search space: 633249167850
effective search space used: 633249167850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.1 bits)